Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0201070 | Msa1094790 | 0.803817 | 2.908817e-49 | -8.615850e-47 |
| Msa1001180 | Msa1094790 | 0.809399 | 1.929208e-50 | -8.615850e-47 |
| Msa1094790 | Msa1094800 | 0.921182 | 4.965734e-88 | -8.615850e-47 |
| Msa1094790 | Msa1121180 | 0.809284 | 2.042068e-50 | -8.615850e-47 |
| Msa0363540 | Msa1094790 | 0.844807 | 6.015510e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGTTAGTCCTCTAAATT+TGG | 0.134263 | 7_3:-16874067 | Msa1094800:CDS |
| TTTGTTAGTCCTCTAAATTT+GGG | 0.282434 | 7_3:-16874066 | Msa1094800:CDS |
| ATGTAATATAATAGGATATT+AGG | 0.290868 | 7_3:+16873965 | Msa1094790:intron |
| GGTAATGTTCTTGCAATTAC+AGG | 0.337969 | 7_3:-16874015 | Msa1094800:CDS |
| CAGCGAGGAGACAAGAATTC+TGG | 0.392278 | 7_3:-16872925 | None:intergenic |
| GTGAGGAGGCGTTGAAGTTG+AGG | 0.408802 | 7_3:-16872819 | None:intergenic |
| TGTCTCCTCGCTGCTGCATC+AGG | 0.413179 | 7_3:+16872935 | Msa1094790:CDS |
| CGTGGTGGTGATGGCCTGAT+GGG | 0.446663 | 7_3:-16872785 | None:intergenic |
| TGAGGAGGCGTTGAAGTTGA+GGG | 0.463952 | 7_3:-16872818 | None:intergenic |
| TCGTGGTGGTGATGGCCTGA+TGG | 0.469529 | 7_3:-16872786 | None:intergenic |
| TTGTTAGTCCTCTAAATTTG+GGG | 0.498289 | 7_3:-16874065 | Msa1094800:CDS |
| TGTTTGCATCGTGGTGGTGA+TGG | 0.503881 | 7_3:-16872794 | None:intergenic |
| TCTTGAGTGAGGTCGAGGAC+GGG | 0.511170 | 7_3:-16872869 | None:intergenic |
| TGTTAGTCCTCTAAATTTGG+GGG | 0.539960 | 7_3:-16874064 | Msa1094800:CDS |
| AGATAAAACTGCGAAGGTGA+AGG | 0.546316 | 7_3:-16872757 | None:intergenic |
| GTCTTGAGTGAGGTCGAGGA+CGG | 0.554306 | 7_3:-16872870 | None:intergenic |
| GTTAGTCCTCTAAATTTGGG+GGG | 0.569600 | 7_3:-16874063 | Msa1094800:CDS |
| TAGAGTCTTGAGTGAGGTCG+AGG | 0.573990 | 7_3:-16872874 | None:intergenic |
| GATAAAACTGCGAAGGTGAA+GGG | 0.581329 | 7_3:-16872756 | None:intergenic |
| GGTGGTGATGGCCTGATGGG+TGG | 0.585835 | 7_3:-16872782 | None:intergenic |
| GTGAGACTTGAGAGGTGAGG+AGG | 0.596775 | 7_3:-16872833 | None:intergenic |
| GTTCAACACGACAACACCGT+TGG | 0.598147 | 7_3:+16872901 | Msa1094790:CDS |
| AACTTCACAACTGATGATGT+TGG | 0.608623 | 7_3:-16874036 | Msa1094800:CDS |
| GAGGTGAGACTTGAGAGGTG+AGG | 0.614705 | 7_3:-16872836 | None:intergenic |
| TGAGTGAGGTCGAGGACGGG+AGG | 0.616793 | 7_3:-16872866 | None:intergenic |
| CTCAGCGTGAGAGAAGACTG+AGG | 0.637541 | 7_3:-16872722 | None:intergenic |
| AGACAAGAATTCTGGTCCAA+CGG | 0.648325 | 7_3:-16872917 | None:intergenic |
| GAGGACGGGAGGCAGAGATG+AGG | 0.656818 | 7_3:-16872855 | None:intergenic |
| GTGGCGAGATAAAACTGCGA+AGG | 0.658711 | 7_3:-16872763 | None:intergenic |
| TCAGCGTGAGAGAAGACTGA+GGG | 0.661402 | 7_3:-16872721 | None:intergenic |
| GAGATGAGGTGAGACTTGAG+AGG | 0.683375 | 7_3:-16872841 | None:intergenic |
| GAGGGATGTTTGCATCGTGG+TGG | 0.687588 | 7_3:-16872800 | None:intergenic |
| GTTGAGGGATGTTTGCATCG+TGG | 0.719384 | 7_3:-16872803 | None:intergenic |
| ACATGATAGAGTCTTGAGTG+AGG | 0.730214 | 7_3:-16872880 | None:intergenic |
| GCTTACCTGATGCAGCAGCG+AGG | 0.748574 | 7_3:-16872940 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCTATTATGTAATATAAT+AGG | + | chr7_3:16873957-16873976 | Msa1094790:intron | 10.0% |
| !! | TATCTATTATGTAATATAAT+AGG | + | chr7_3:16873957-16873976 | Msa1094790:intron | 10.0% |
| !! | ATAAAACAAACAAATTAATC+TGG | + | chr7_3:16873139-16873158 | Msa1094790:intron | 15.0% |
| !! | TAAAACAAACAAATTAATCT+GGG | + | chr7_3:16873140-16873159 | Msa1094790:intron | 15.0% |
| !!! | ATTTTGATGGATATTATTTT+TGG | - | chr7_3:16873669-16873688 | Msa1094800:intron | 15.0% |
| !! | ATGTAATATAATAGGATATT+AGG | + | chr7_3:16873965-16873984 | Msa1094790:intron | 15.0% |
| !! | ATAAAACAAACAAATTAATC+TGG | + | chr7_3:16873139-16873158 | Msa1094790:intron | 15.0% |
| !! | TAAAACAAACAAATTAATCT+GGG | + | chr7_3:16873140-16873159 | Msa1094790:intron | 15.0% |
| !!! | ATTTTGATGGATATTATTTT+TGG | - | chr7_3:16873669-16873688 | Msa1094800:intron | 15.0% |
| !! | ATGTAATATAATAGGATATT+AGG | + | chr7_3:16873965-16873984 | Msa1094790:intron | 15.0% |
| !! | TGTGTTTCTTTGTAAAAAAA+GGG | - | chr7_3:16872696-16872715 | None:intergenic | 20.0% |
| !! | ATGTGTTTCTTTGTAAAAAA+AGG | - | chr7_3:16872697-16872716 | None:intergenic | 20.0% |
| !! | TAAAACAAGCATAATAAACT+GGG | - | chr7_3:16873023-16873042 | None:intergenic | 20.0% |
| !! | ATAAAACAAGCATAATAAAC+TGG | - | chr7_3:16873024-16873043 | None:intergenic | 20.0% |
| !! | AATAACAAGCATATCAAATT+GGG | - | chr7_3:16873098-16873117 | None:intergenic | 20.0% |
| !! | AAATAACAAGCATATCAAAT+TGG | - | chr7_3:16873099-16873118 | None:intergenic | 20.0% |
| !!! | TTTTATTATACCTAACTTGT+GGG | - | chr7_3:16873125-16873144 | None:intergenic | 20.0% |
| !! | TAACTTTCTTCTTATGATAT+TGG | - | chr7_3:16873217-16873236 | None:intergenic | 20.0% |
| !! | TATCATAAGAAGAAAGTTAA+AGG | + | chr7_3:16873218-16873237 | Msa1094790:intron | 20.0% |
| !!! | CTGAATGTAAATTTCTAAAA+GGG | - | chr7_3:16873508-16873527 | None:intergenic | 20.0% |
| !! | TCTGAATGTAAATTTCTAAA+AGG | - | chr7_3:16873509-16873528 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTCTTACAAAGTT+TGG | - | chr7_3:16873698-16873717 | Msa1094800:intron | 20.0% |
| !! | TGTGTTTCTTTGTAAAAAAA+GGG | - | chr7_3:16872696-16872715 | None:intergenic | 20.0% |
| !! | ATGTGTTTCTTTGTAAAAAA+AGG | - | chr7_3:16872697-16872716 | None:intergenic | 20.0% |
| !! | TAAAACAAGCATAATAAACT+GGG | - | chr7_3:16873023-16873042 | None:intergenic | 20.0% |
| !! | ATAAAACAAGCATAATAAAC+TGG | - | chr7_3:16873024-16873043 | None:intergenic | 20.0% |
| !! | AATAACAAGCATATCAAATT+GGG | - | chr7_3:16873098-16873117 | None:intergenic | 20.0% |
| !! | AAATAACAAGCATATCAAAT+TGG | - | chr7_3:16873099-16873118 | None:intergenic | 20.0% |
| !!! | TTTTATTATACCTAACTTGT+GGG | - | chr7_3:16873125-16873144 | None:intergenic | 20.0% |
| !! | TAACTTTCTTCTTATGATAT+TGG | - | chr7_3:16873217-16873236 | None:intergenic | 20.0% |
| !! | TATCATAAGAAGAAAGTTAA+AGG | + | chr7_3:16873218-16873237 | Msa1094790:intron | 20.0% |
| !!! | CTGAATGTAAATTTCTAAAA+GGG | - | chr7_3:16873508-16873527 | None:intergenic | 20.0% |
| !! | TCTGAATGTAAATTTCTAAA+AGG | - | chr7_3:16873509-16873528 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTCTTACAAAGTT+TGG | - | chr7_3:16873698-16873717 | Msa1094800:intron | 20.0% |
| ! | AAAACAAGCATAATAAACTG+GGG | - | chr7_3:16873022-16873041 | None:intergenic | 25.0% |
| ! | ATAACAAGCATATCAAATTG+GGG | - | chr7_3:16873097-16873116 | None:intergenic | 25.0% |
| !!! | GTTTTATTATACCTAACTTG+TGG | - | chr7_3:16873126-16873145 | None:intergenic | 25.0% |
| ! | AAAAACTTGTCAATTGCAAA+TGG | + | chr7_3:16873301-16873320 | Msa1094790:intron | 25.0% |
| ! | GACTATATCATAAAGAAGAT+TGG | + | chr7_3:16873407-16873426 | Msa1094790:intron | 25.0% |
| !!! | TTATTTTTGGCATGTTGATT+TGG | - | chr7_3:16873656-16873675 | Msa1094800:intron | 25.0% |
| !! | AGTTTGGTATTAGATTTTGA+TGG | - | chr7_3:16873682-16873701 | Msa1094800:intron | 25.0% |
| ! | ACTTACAATATACCAGTATA+TGG | - | chr7_3:16873882-16873901 | Msa1094800:intron | 25.0% |
| ! | TATACTGGTATATTGTAAGT+TGG | + | chr7_3:16873882-16873901 | Msa1094790:intron | 25.0% |
| ! | TTTGTTAGTCCTCTAAATTT+GGG | - | chr7_3:16874069-16874088 | Msa1094800:CDS | 25.0% |
| ! | AAAACAAGCATAATAAACTG+GGG | - | chr7_3:16873022-16873041 | None:intergenic | 25.0% |
| ! | ATAACAAGCATATCAAATTG+GGG | - | chr7_3:16873097-16873116 | None:intergenic | 25.0% |
| !!! | GTTTTATTATACCTAACTTG+TGG | - | chr7_3:16873126-16873145 | None:intergenic | 25.0% |
| ! | AAAAACTTGTCAATTGCAAA+TGG | + | chr7_3:16873301-16873320 | Msa1094790:intron | 25.0% |
| ! | GACTATATCATAAAGAAGAT+TGG | + | chr7_3:16873407-16873426 | Msa1094790:intron | 25.0% |
| !!! | TTATTTTTGGCATGTTGATT+TGG | - | chr7_3:16873656-16873675 | Msa1094800:intron | 25.0% |
| !! | AGTTTGGTATTAGATTTTGA+TGG | - | chr7_3:16873682-16873701 | Msa1094800:intron | 25.0% |
| ! | ACTTACAATATACCAGTATA+TGG | - | chr7_3:16873882-16873901 | Msa1094800:intron | 25.0% |
| ! | TATACTGGTATATTGTAAGT+TGG | + | chr7_3:16873882-16873901 | Msa1094790:intron | 25.0% |
| ! | TTTGTTAGTCCTCTAAATTT+GGG | - | chr7_3:16874069-16874088 | Msa1094800:CDS | 25.0% |
| ! | TCTTTGTAAAAAAAGGGTAC+TGG | - | chr7_3:16872690-16872709 | None:intergenic | 30.0% |
| ACAACAACAAGCATCAAAAT+TGG | - | chr7_3:16872981-16873000 | None:intergenic | 30.0% | |
| GTTATTTAATCCCACAAGTT+AGG | + | chr7_3:16873112-16873131 | Msa1094790:intron | 30.0% | |
| AACAAACAAATTAATCTGGG+TGG | + | chr7_3:16873143-16873162 | Msa1094790:intron | 30.0% | |
| GTCATCAATACAGATTAACT+TGG | - | chr7_3:16873195-16873214 | None:intergenic | 30.0% | |
| CAATTGCAAATGGATCAAAA+AGG | + | chr7_3:16873311-16873330 | Msa1094790:intron | 30.0% | |
| AACAAACAATCAAGTTTCAG+AGG | + | chr7_3:16873385-16873404 | Msa1094790:intron | 30.0% | |
| AAACTTGCACATTAATGTAC+AGG | - | chr7_3:16873458-16873477 | None:intergenic | 30.0% | |
| ATGTCTCTATTCAAAGCTAT+TGG | - | chr7_3:16873581-16873600 | Msa1094800:CDS | 30.0% | |
| AAGGAATAAACCTGTTGTAA+TGG | + | chr7_3:16873810-16873829 | Msa1094790:intron | 30.0% | |
| ! | GTATTCTTTTCTATGGACTT+AGG | - | chr7_3:16873839-16873858 | Msa1094800:intron | 30.0% |
| ! | ACTGACTGTATTCTTTTCTA+TGG | - | chr7_3:16873846-16873865 | Msa1094800:intron | 30.0% |
| !! | AACAAGCTTTTTCCATATAC+TGG | + | chr7_3:16873867-16873886 | Msa1094790:intron | 30.0% |
| !! | TACTAGCTTGTGAAATTTTC+AGG | - | chr7_3:16873926-16873945 | Msa1094800:intron | 30.0% |
| TTGTTAGTCCTCTAAATTTG+GGG | - | chr7_3:16874068-16874087 | Msa1094800:CDS | 30.0% | |
| ! | GTTTGTTAGTCCTCTAAATT+TGG | - | chr7_3:16874070-16874089 | Msa1094800:CDS | 30.0% |
| ! | TCTTTGTAAAAAAAGGGTAC+TGG | - | chr7_3:16872690-16872709 | None:intergenic | 30.0% |
| ACAACAACAAGCATCAAAAT+TGG | - | chr7_3:16872981-16873000 | None:intergenic | 30.0% | |
| GTTATTTAATCCCACAAGTT+AGG | + | chr7_3:16873112-16873131 | Msa1094790:intron | 30.0% | |
| AACAAACAAATTAATCTGGG+TGG | + | chr7_3:16873143-16873162 | Msa1094790:intron | 30.0% | |
| GTCATCAATACAGATTAACT+TGG | - | chr7_3:16873195-16873214 | None:intergenic | 30.0% | |
| CAATTGCAAATGGATCAAAA+AGG | + | chr7_3:16873311-16873330 | Msa1094790:intron | 30.0% | |
| AACAAACAATCAAGTTTCAG+AGG | + | chr7_3:16873385-16873404 | Msa1094790:intron | 30.0% | |
| AAACTTGCACATTAATGTAC+AGG | - | chr7_3:16873458-16873477 | None:intergenic | 30.0% | |
| ATGTCTCTATTCAAAGCTAT+TGG | - | chr7_3:16873581-16873600 | Msa1094800:CDS | 30.0% | |
| AAGGAATAAACCTGTTGTAA+TGG | + | chr7_3:16873810-16873829 | Msa1094790:intron | 30.0% | |
| ! | GTATTCTTTTCTATGGACTT+AGG | - | chr7_3:16873839-16873858 | Msa1094800:intron | 30.0% |
| ! | ACTGACTGTATTCTTTTCTA+TGG | - | chr7_3:16873846-16873865 | Msa1094800:intron | 30.0% |
| !! | AACAAGCTTTTTCCATATAC+TGG | + | chr7_3:16873867-16873886 | Msa1094790:intron | 30.0% |
| !! | TACTAGCTTGTGAAATTTTC+AGG | - | chr7_3:16873926-16873945 | Msa1094800:intron | 30.0% |
| TTGTTAGTCCTCTAAATTTG+GGG | - | chr7_3:16874068-16874087 | Msa1094800:CDS | 30.0% | |
| ! | GTTTGTTAGTCCTCTAAATT+TGG | - | chr7_3:16874070-16874089 | Msa1094800:CDS | 30.0% |
| !! | TTGTAAAAAAAGGGTACTGG+CGG | - | chr7_3:16872687-16872706 | None:intergenic | 35.0% |
| AAATTGGAGAAGGAATCGAA+AGG | - | chr7_3:16872965-16872984 | None:intergenic | 35.0% | |
| ACAAGCATCAAAATTGGAGA+AGG | - | chr7_3:16872975-16872994 | None:intergenic | 35.0% | |
| TCCCTTGCAAAATCGATATT+GGG | - | chr7_3:16873048-16873067 | None:intergenic | 35.0% | |
| ATCCCTTGCAAAATCGATAT+TGG | - | chr7_3:16873049-16873068 | None:intergenic | 35.0% | |
| GGTAATGTTCTTGCAATTAC+AGG | - | chr7_3:16874018-16874037 | Msa1094800:CDS | 35.0% | |
| ! | AACTTCACAACTGATGATGT+TGG | - | chr7_3:16874039-16874058 | Msa1094800:CDS | 35.0% |
| TGTTAGTCCTCTAAATTTGG+GGG | - | chr7_3:16874067-16874086 | Msa1094800:CDS | 35.0% | |
| !! | TTGTAAAAAAAGGGTACTGG+CGG | - | chr7_3:16872687-16872706 | None:intergenic | 35.0% |
| AAATTGGAGAAGGAATCGAA+AGG | - | chr7_3:16872965-16872984 | None:intergenic | 35.0% | |
| ACAAGCATCAAAATTGGAGA+AGG | - | chr7_3:16872975-16872994 | None:intergenic | 35.0% | |
| TCCCTTGCAAAATCGATATT+GGG | - | chr7_3:16873048-16873067 | None:intergenic | 35.0% | |
| ATCCCTTGCAAAATCGATAT+TGG | - | chr7_3:16873049-16873068 | None:intergenic | 35.0% | |
| GGTAATGTTCTTGCAATTAC+AGG | - | chr7_3:16874018-16874037 | Msa1094800:CDS | 35.0% | |
| ! | AACTTCACAACTGATGATGT+TGG | - | chr7_3:16874039-16874058 | Msa1094800:CDS | 35.0% |
| TGTTAGTCCTCTAAATTTGG+GGG | - | chr7_3:16874067-16874086 | Msa1094800:CDS | 35.0% | |
| GATAAAACTGCGAAGGTGAA+GGG | - | chr7_3:16872759-16872778 | None:intergenic | 40.0% | |
| AGATAAAACTGCGAAGGTGA+AGG | - | chr7_3:16872760-16872779 | None:intergenic | 40.0% | |
| ACATGATAGAGTCTTGAGTG+AGG | - | chr7_3:16872883-16872902 | None:intergenic | 40.0% | |
| AGACAAGAATTCTGGTCCAA+CGG | - | chr7_3:16872920-16872939 | None:intergenic | 40.0% | |
| !!! | TCCCCAATATCGATTTTGCA+AGG | + | chr7_3:16873043-16873062 | Msa1094790:intron | 40.0% |
| CCCTTGCAAAATCGATATTG+GGG | - | chr7_3:16873047-16873066 | None:intergenic | 40.0% | |
| !!! | CCCCAATATCGATTTTGCAA+GGG | + | chr7_3:16873044-16873063 | Msa1094790:intron | 40.0% |
| ! | AACTTGGTCACAAAAGCGTA+TGG | - | chr7_3:16873179-16873198 | None:intergenic | 40.0% |
| AACAGGAACAACACCAAAGA+GGG | - | chr7_3:16873631-16873650 | Msa1094800:intron | 40.0% | |
| AAACAGGAACAACACCAAAG+AGG | - | chr7_3:16873632-16873651 | Msa1094800:intron | 40.0% | |
| !! | GGCATGTTGATTTGGAAAAC+AGG | - | chr7_3:16873648-16873667 | Msa1094800:intron | 40.0% |
| TGAATACACTTACCACTGCT+CGG | + | chr7_3:16873779-16873798 | Msa1094790:intron | 40.0% | |
| ACTTAGGTGACCATTACAAC+AGG | - | chr7_3:16873823-16873842 | Msa1094800:intron | 40.0% | |
| TTCAATCCCCCCAAATTTAG+AGG | + | chr7_3:16874057-16874076 | Msa1094790:CDS | 40.0% | |
| GTTAGTCCTCTAAATTTGGG+GGG | - | chr7_3:16874066-16874085 | Msa1094800:CDS | 40.0% | |
| GATAAAACTGCGAAGGTGAA+GGG | - | chr7_3:16872759-16872778 | None:intergenic | 40.0% | |
| AGATAAAACTGCGAAGGTGA+AGG | - | chr7_3:16872760-16872779 | None:intergenic | 40.0% | |
| ACATGATAGAGTCTTGAGTG+AGG | - | chr7_3:16872883-16872902 | None:intergenic | 40.0% | |
| AGACAAGAATTCTGGTCCAA+CGG | - | chr7_3:16872920-16872939 | None:intergenic | 40.0% | |
| !!! | TCCCCAATATCGATTTTGCA+AGG | + | chr7_3:16873043-16873062 | Msa1094790:intron | 40.0% |
| CCCTTGCAAAATCGATATTG+GGG | - | chr7_3:16873047-16873066 | None:intergenic | 40.0% | |
| !!! | CCCCAATATCGATTTTGCAA+GGG | + | chr7_3:16873044-16873063 | Msa1094790:intron | 40.0% |
| ! | AACTTGGTCACAAAAGCGTA+TGG | - | chr7_3:16873179-16873198 | None:intergenic | 40.0% |
| AACAGGAACAACACCAAAGA+GGG | - | chr7_3:16873631-16873650 | Msa1094800:intron | 40.0% | |
| AAACAGGAACAACACCAAAG+AGG | - | chr7_3:16873632-16873651 | Msa1094800:intron | 40.0% | |
| !! | GGCATGTTGATTTGGAAAAC+AGG | - | chr7_3:16873648-16873667 | Msa1094800:intron | 40.0% |
| TGAATACACTTACCACTGCT+CGG | + | chr7_3:16873779-16873798 | Msa1094790:intron | 40.0% | |
| ACTTAGGTGACCATTACAAC+AGG | - | chr7_3:16873823-16873842 | Msa1094800:intron | 40.0% | |
| TTCAATCCCCCCAAATTTAG+AGG | + | chr7_3:16874057-16874076 | Msa1094790:CDS | 40.0% | |
| GTTAGTCCTCTAAATTTGGG+GGG | - | chr7_3:16874066-16874085 | Msa1094800:CDS | 40.0% | |
| ACAGGAACAACACCAAAGAG+GGG | - | chr7_3:16873630-16873649 | Msa1094800:intron | 45.0% | |
| ACAGGAACAACACCAAAGAG+GGG | - | chr7_3:16873630-16873649 | Msa1094800:intron | 45.0% | |
| TCAGCGTGAGAGAAGACTGA+GGG | - | chr7_3:16872724-16872743 | None:intergenic | 50.0% | |
| GTGGCGAGATAAAACTGCGA+AGG | - | chr7_3:16872766-16872785 | None:intergenic | 50.0% | |
| ! | GTTTTATCTCGCCACCCATC+AGG | + | chr7_3:16872771-16872790 | Msa1094790:five_prime_UTR | 50.0% |
| ! | TGTTTGCATCGTGGTGGTGA+TGG | - | chr7_3:16872797-16872816 | None:intergenic | 50.0% |
| GTTGAGGGATGTTTGCATCG+TGG | - | chr7_3:16872806-16872825 | None:intergenic | 50.0% | |
| !! | TGAGGAGGCGTTGAAGTTGA+GGG | - | chr7_3:16872821-16872840 | None:intergenic | 50.0% |
| GAGATGAGGTGAGACTTGAG+AGG | - | chr7_3:16872844-16872863 | None:intergenic | 50.0% | |
| TAGAGTCTTGAGTGAGGTCG+AGG | - | chr7_3:16872877-16872896 | None:intergenic | 50.0% | |
| GTTCAACACGACAACACCGT+TGG | + | chr7_3:16872901-16872920 | Msa1094790:CDS | 50.0% | |
| CAGCGAGGAGACAAGAATTC+TGG | - | chr7_3:16872928-16872947 | None:intergenic | 50.0% | |
| AAAGCTATTGGACCTGCTGC+AGG | - | chr7_3:16873569-16873588 | Msa1094800:CDS | 50.0% | |
| TTCCATTAGCTGCCCCTCTT+TGG | + | chr7_3:16873615-16873634 | Msa1094790:intron | 50.0% | |
| CCTTATACAGAACCGAGCAG+TGG | - | chr7_3:16873794-16873813 | Msa1094800:CDS | 50.0% | |
| CCACTGCTCGGTTCTGTATA+AGG | + | chr7_3:16873791-16873810 | Msa1094790:intron | 50.0% | |
| TCAGCGTGAGAGAAGACTGA+GGG | - | chr7_3:16872724-16872743 | None:intergenic | 50.0% | |
| GTGGCGAGATAAAACTGCGA+AGG | - | chr7_3:16872766-16872785 | None:intergenic | 50.0% | |
| ! | GTTTTATCTCGCCACCCATC+AGG | + | chr7_3:16872771-16872790 | Msa1094790:five_prime_UTR | 50.0% |
| ! | TGTTTGCATCGTGGTGGTGA+TGG | - | chr7_3:16872797-16872816 | None:intergenic | 50.0% |
| GTTGAGGGATGTTTGCATCG+TGG | - | chr7_3:16872806-16872825 | None:intergenic | 50.0% | |
| !! | TGAGGAGGCGTTGAAGTTGA+GGG | - | chr7_3:16872821-16872840 | None:intergenic | 50.0% |
| GAGATGAGGTGAGACTTGAG+AGG | - | chr7_3:16872844-16872863 | None:intergenic | 50.0% | |
| TAGAGTCTTGAGTGAGGTCG+AGG | - | chr7_3:16872877-16872896 | None:intergenic | 50.0% | |
| GTTCAACACGACAACACCGT+TGG | + | chr7_3:16872901-16872920 | Msa1094790:CDS | 50.0% | |
| CAGCGAGGAGACAAGAATTC+TGG | - | chr7_3:16872928-16872947 | None:intergenic | 50.0% | |
| AAAGCTATTGGACCTGCTGC+AGG | - | chr7_3:16873569-16873588 | Msa1094800:CDS | 50.0% | |
| TTCCATTAGCTGCCCCTCTT+TGG | + | chr7_3:16873615-16873634 | Msa1094790:intron | 50.0% | |
| CCTTATACAGAACCGAGCAG+TGG | - | chr7_3:16873794-16873813 | Msa1094800:CDS | 50.0% | |
| CCACTGCTCGGTTCTGTATA+AGG | + | chr7_3:16873791-16873810 | Msa1094790:intron | 50.0% | |
| CTCAGCGTGAGAGAAGACTG+AGG | - | chr7_3:16872725-16872744 | None:intergenic | 55.0% | |
| GAGGGATGTTTGCATCGTGG+TGG | - | chr7_3:16872803-16872822 | None:intergenic | 55.0% | |
| !! | GTGAGGAGGCGTTGAAGTTG+AGG | - | chr7_3:16872822-16872841 | None:intergenic | 55.0% |
| GTGAGACTTGAGAGGTGAGG+AGG | - | chr7_3:16872836-16872855 | None:intergenic | 55.0% | |
| GAGGTGAGACTTGAGAGGTG+AGG | - | chr7_3:16872839-16872858 | None:intergenic | 55.0% | |
| TCTTGAGTGAGGTCGAGGAC+GGG | - | chr7_3:16872872-16872891 | None:intergenic | 55.0% | |
| GTCTTGAGTGAGGTCGAGGA+CGG | - | chr7_3:16872873-16872892 | None:intergenic | 55.0% | |
| CACATTGTACCACCTGCAGC+AGG | + | chr7_3:16873554-16873573 | Msa1094790:intron | 55.0% | |
| CACCAAAGAGGGGCAGCTAA+TGG | - | chr7_3:16873620-16873639 | Msa1094800:CDS | 55.0% | |
| CTCAGCGTGAGAGAAGACTG+AGG | - | chr7_3:16872725-16872744 | None:intergenic | 55.0% | |
| GAGGGATGTTTGCATCGTGG+TGG | - | chr7_3:16872803-16872822 | None:intergenic | 55.0% | |
| !! | GTGAGGAGGCGTTGAAGTTG+AGG | - | chr7_3:16872822-16872841 | None:intergenic | 55.0% |
| GTGAGACTTGAGAGGTGAGG+AGG | - | chr7_3:16872836-16872855 | None:intergenic | 55.0% | |
| GAGGTGAGACTTGAGAGGTG+AGG | - | chr7_3:16872839-16872858 | None:intergenic | 55.0% | |
| TCTTGAGTGAGGTCGAGGAC+GGG | - | chr7_3:16872872-16872891 | None:intergenic | 55.0% | |
| GTCTTGAGTGAGGTCGAGGA+CGG | - | chr7_3:16872873-16872892 | None:intergenic | 55.0% | |
| CACATTGTACCACCTGCAGC+AGG | + | chr7_3:16873554-16873573 | Msa1094790:intron | 55.0% | |
| CACCAAAGAGGGGCAGCTAA+TGG | - | chr7_3:16873620-16873639 | Msa1094800:CDS | 55.0% | |
| !! | CGTGGTGGTGATGGCCTGAT+GGG | - | chr7_3:16872788-16872807 | None:intergenic | 60.0% |
| !! | TCGTGGTGGTGATGGCCTGA+TGG | - | chr7_3:16872789-16872808 | None:intergenic | 60.0% |
| TGTCTCCTCGCTGCTGCATC+AGG | + | chr7_3:16872935-16872954 | Msa1094790:CDS | 60.0% | |
| GCTTACCTGATGCAGCAGCG+AGG | - | chr7_3:16872943-16872962 | None:intergenic | 60.0% | |
| GCTATTGGACCTGCTGCAGG+TGG | - | chr7_3:16873566-16873585 | Msa1094800:CDS | 60.0% | |
| !! | CGTGGTGGTGATGGCCTGAT+GGG | - | chr7_3:16872788-16872807 | None:intergenic | 60.0% |
| !! | TCGTGGTGGTGATGGCCTGA+TGG | - | chr7_3:16872789-16872808 | None:intergenic | 60.0% |
| TGTCTCCTCGCTGCTGCATC+AGG | + | chr7_3:16872935-16872954 | Msa1094790:CDS | 60.0% | |
| GCTTACCTGATGCAGCAGCG+AGG | - | chr7_3:16872943-16872962 | None:intergenic | 60.0% | |
| GCTATTGGACCTGCTGCAGG+TGG | - | chr7_3:16873566-16873585 | Msa1094800:CDS | 60.0% | |
| !! | GGTGGTGATGGCCTGATGGG+TGG | - | chr7_3:16872785-16872804 | None:intergenic | 65.0% |
| GAGGACGGGAGGCAGAGATG+AGG | - | chr7_3:16872858-16872877 | None:intergenic | 65.0% | |
| TGAGTGAGGTCGAGGACGGG+AGG | - | chr7_3:16872869-16872888 | None:intergenic | 65.0% | |
| !! | GGTGGTGATGGCCTGATGGG+TGG | - | chr7_3:16872785-16872804 | None:intergenic | 65.0% |
| GAGGACGGGAGGCAGAGATG+AGG | - | chr7_3:16872858-16872877 | None:intergenic | 65.0% | |
| TGAGTGAGGTCGAGGACGGG+AGG | - | chr7_3:16872869-16872888 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 16872677 | 16874107 | 16872677 | ID=Msa1094790;Name=Msa1094790 |
| chr7_3 | mRNA | 16872677 | 16874107 | 16872677 | ID=Msa1094790-mRNA-1;Parent=Msa1094790;Name=Msa1094790-mRNA-1;_AED=0.43;_eAED=0.62;_QI=131|0|0.33|1|0|0|3|0|94 |
| chr7_3 | exon | 16872677 | 16872956 | 16872677 | ID=Msa1094790-mRNA-1:exon:3763;Parent=Msa1094790-mRNA-1 |
| chr7_3 | exon | 16873271 | 16873277 | 16873271 | ID=Msa1094790-mRNA-1:exon:3764;Parent=Msa1094790-mRNA-1 |
| chr7_3 | exon | 16873979 | 16874107 | 16873979 | ID=Msa1094790-mRNA-1:exon:3765;Parent=Msa1094790-mRNA-1 |
| chr7_3 | five_prime_UTR | 16872677 | 16872807 | 16872677 | ID=Msa1094790-mRNA-1:five_prime_utr;Parent=Msa1094790-mRNA-1 |
| chr7_3 | CDS | 16872808 | 16872956 | 16872808 | ID=Msa1094790-mRNA-1:cds;Parent=Msa1094790-mRNA-1 |
| chr7_3 | CDS | 16873271 | 16873277 | 16873271 | ID=Msa1094790-mRNA-1:cds;Parent=Msa1094790-mRNA-1 |
| chr7_3 | CDS | 16873979 | 16874107 | 16873979 | ID=Msa1094790-mRNA-1:cds;Parent=Msa1094790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
