Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1094800 | XP_013445183.1 | 53.744 | 227 | 16 | 3 | 49 | 186 | 210 | 436 | 2.91e-58 | 200 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1094800 | sp|Q94BZ1|ZIFL1_ARATH | 37.281 | 228 | 52 | 5 | 49 | 186 | 208 | 434 | 1.44e-33 | 127 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1094800 | A0A072TNX0 | 53.744 | 227 | 16 | 3 | 49 | 186 | 210 | 436 | 1.39e-58 | 200 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1001180 | Msa1094800 | 0.802131 | 6.490177e-49 | -8.615850e-47 |
Msa1094790 | Msa1094800 | 0.921182 | 4.965734e-88 | -8.615850e-47 |
Msa1094800 | Msa1121180 | 0.804740 | 1.868430e-49 | -8.615850e-47 |
Msa0363540 | Msa1094800 | 0.874496 | 6.454956e-68 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1094800 | MtrunA17_Chr8g0354831 | 53.744 | 227 | 16 | 3 | 49 | 186 | 210 | 436 | 2.68e-62 | 200 |
Msa1094800 | MtrunA17_Chr8g0354841 | 47.768 | 224 | 31 | 3 | 49 | 186 | 206 | 429 | 3.44e-55 | 181 |
Msa1094800 | MtrunA17_Chr8g0354861 | 46.429 | 224 | 34 | 4 | 49 | 186 | 65 | 288 | 1.67e-52 | 170 |
Msa1094800 | MtrunA17_Chr8g0354891 | 46.429 | 224 | 34 | 4 | 49 | 186 | 210 | 433 | 1.13e-51 | 172 |
Msa1094800 | MtrunA17_Chr8g0354851 | 45.982 | 224 | 35 | 4 | 49 | 186 | 206 | 429 | 1.95e-49 | 167 |
Msa1094800 | MtrunA17_Chr8g0364441 | 43.158 | 190 | 56 | 3 | 49 | 186 | 248 | 437 | 1.57e-40 | 142 |
Msa1094800 | MtrunA17_Chr3g0080421 | 39.474 | 228 | 48 | 5 | 49 | 186 | 209 | 436 | 2.06e-38 | 137 |
Msa1094800 | MtrunA17_Chr3g0080431 | 36.607 | 224 | 56 | 3 | 49 | 186 | 208 | 431 | 3.51e-38 | 136 |
Msa1094800 | MtrunA17_Chr3g0123441 | 60.000 | 70 | 24 | 2 | 121 | 186 | 27 | 96 | 2.72e-17 | 74.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1094800 | AT5G13750.2 | 37.281 | 228 | 52 | 5 | 49 | 186 | 122 | 348 | 1.40e-35 | 128 |
Msa1094800 | AT5G13750.1 | 37.281 | 228 | 52 | 5 | 49 | 186 | 208 | 434 | 1.46e-34 | 127 |
Msa1094800 | AT5G13740.2 | 33.333 | 234 | 60 | 6 | 49 | 186 | 209 | 442 | 2.43e-27 | 107 |
Msa1094800 | AT5G13740.1 | 33.333 | 234 | 60 | 6 | 49 | 186 | 209 | 442 | 3.23e-27 | 107 |
Msa1094800 | AT3G43790.1 | 32.174 | 230 | 63 | 4 | 49 | 186 | 207 | 435 | 2.18e-26 | 105 |
Msa1094800 | AT3G43790.4 | 32.174 | 230 | 63 | 4 | 49 | 186 | 207 | 435 | 2.18e-26 | 105 |
Msa1094800 | AT3G43790.2 | 32.174 | 230 | 63 | 4 | 49 | 186 | 207 | 435 | 2.72e-26 | 104 |
Msa1094800 | AT3G43790.3 | 32.174 | 230 | 63 | 4 | 49 | 186 | 207 | 435 | 2.72e-26 | 104 |
Msa1094800 | AT5G13750.3 | 40.000 | 125 | 42 | 3 | 49 | 141 | 208 | 331 | 1.18e-19 | 85.9 |
Msa1094800 | AT5G13750.4 | 40.000 | 125 | 42 | 3 | 49 | 141 | 208 | 331 | 1.18e-19 | 85.9 |
Msa1094800 | AT3G43790.5 | 38.017 | 121 | 39 | 2 | 49 | 134 | 207 | 326 | 5.01e-16 | 75.5 |
Find 39 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTTGTTAGTCCTCTAAATT+TGG | 0.134263 | 7_3:-16874067 | Msa1094800:CDS |
TTTGTTAGTCCTCTAAATTT+GGG | 0.282434 | 7_3:-16874066 | Msa1094800:CDS |
CCACTGCTCGGTTCTGTATA+AGG | 0.292660 | 7_3:+16873791 | Msa1094790:intron |
TTCCATTAGCTGCCCCTCTT+TGG | 0.304002 | 7_3:+16873615 | Msa1094790:intron |
TTGCCCTGCTTCATAATATC+AGG | 0.334714 | 7_3:-16874323 | Msa1094800:CDS |
GGTAATGTTCTTGCAATTAC+AGG | 0.337969 | 7_3:-16874015 | Msa1094800:CDS |
AGCAATGATAGATGACATAA+AGG | 0.379944 | 7_3:+16874229 | None:intergenic |
TGGAGGCAAGGGCGTTTGTT+TGG | 0.398500 | 7_3:-16875915 | Msa1094800:CDS |
TCATGATCACTACATACATA+TGG | 0.400619 | 7_3:-16875942 | Msa1094800:CDS |
CACCAAAGAGGGGCAGCTAA+TGG | 0.408771 | 7_3:-16873617 | Msa1094800:CDS |
ATGTCTCTATTCAAAGCTAT+TGG | 0.422437 | 7_3:-16873578 | Msa1094800:CDS |
CAAGGGCGTTTGTTTGGTTG+CGG | 0.428706 | 7_3:-16875909 | Msa1094800:CDS |
TGATCTCCAGACATCTTCAT+TGG | 0.431417 | 7_3:+16875991 | None:intergenic |
GTCTCGCCAATGAAGATGTC+TGG | 0.437826 | 7_3:-16875997 | Msa1094800:CDS |
AACAGGAACAACACCAAAGA+GGG | 0.450572 | 7_3:-16873628 | Msa1094800:intron |
AACTCCTGATATTATGAAGC+AGG | 0.459270 | 7_3:+16874319 | None:intergenic |
AAGGAATAAACCTGTTGTAA+TGG | 0.468522 | 7_3:+16873810 | Msa1094790:intron |
ATGAAGCAGGGCAAGAAGTA+AGG | 0.481618 | 7_3:+16874332 | None:intergenic |
TTGTTAGTCCTCTAAATTTG+GGG | 0.498289 | 7_3:-16874065 | Msa1094800:CDS |
AAAGCTATTGGACCTGCTGC+AGG | 0.503328 | 7_3:-16873566 | Msa1094800:CDS |
ACTTAGGTGACCATTACAAC+AGG | 0.504930 | 7_3:-16873820 | Msa1094800:intron |
GCAATGATAGATGACATAAA+GGG | 0.513552 | 7_3:+16874230 | None:intergenic |
CATGATCACTACATACATAT+GGG | 0.532266 | 7_3:-16875941 | Msa1094800:CDS |
CACTACATACATATGGGAGC+TGG | 0.535748 | 7_3:-16875935 | Msa1094800:CDS |
TGTTAGTCCTCTAAATTTGG+GGG | 0.539960 | 7_3:-16874064 | Msa1094800:CDS |
ACATATGGGAGCTGGAGGCA+AGG | 0.553146 | 7_3:-16875927 | Msa1094800:CDS |
TAAAGGGCAAATTCATGAAG+AGG | 0.558684 | 7_3:+16874246 | None:intergenic |
CATATGGGAGCTGGAGGCAA+GGG | 0.559229 | 7_3:-16875926 | Msa1094800:CDS |
GTTAGTCCTCTAAATTTGGG+GGG | 0.569600 | 7_3:-16874063 | Msa1094800:CDS |
CACATTGTACCACCTGCAGC+AGG | 0.570958 | 7_3:+16873554 | Msa1094790:intron |
AAACAGGAACAACACCAAAG+AGG | 0.593747 | 7_3:-16873629 | Msa1094800:intron |
TGAATACACTTACCACTGCT+CGG | 0.594002 | 7_3:+16873779 | Msa1094790:intron |
ACTCCTGATATTATGAAGCA+GGG | 0.598947 | 7_3:+16874320 | None:intergenic |
AACTTCACAACTGATGATGT+TGG | 0.608623 | 7_3:-16874036 | Msa1094800:CDS |
GAAGATGTCTGGAGATCACA+AGG | 0.629415 | 7_3:-16875986 | Msa1094800:CDS |
TACATACATATGGGAGCTGG+AGG | 0.629564 | 7_3:-16875932 | Msa1094800:CDS |
GCTATTGGACCTGCTGCAGG+TGG | 0.654083 | 7_3:-16873563 | Msa1094800:CDS |
CCTTATACAGAACCGAGCAG+TGG | 0.682906 | 7_3:-16873791 | Msa1094800:intron |
ACAGGAACAACACCAAAGAG+GGG | 0.717818 | 7_3:-16873627 | Msa1094800:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAACTAAAAAAAATGAAT+CGG | - | chr7_3:16873811-16873830 | Msa1094800:CDS | 10.0% |
!!! | AGGTAAATTTTTAAATAATA+AGG | - | chr7_3:16875403-16875422 | Msa1094800:intron | 10.0% |
!! | TATCTATTATGTAATATAAT+AGG | + | chr7_3:16875618-16875637 | None:intergenic | 10.0% |
!! | AAGTTATACTAAATGTTATT+TGG | + | chr7_3:16874068-16874087 | Msa1094790:CDS | 15.0% |
!! | AGATATCATAGAAAATAATT+CGG | - | chr7_3:16874608-16874627 | Msa1094800:intron | 15.0% |
!! | TTTCAAATTTATAAAACTCA+AGG | - | chr7_3:16874963-16874982 | Msa1094800:intron | 15.0% |
!! | TTCAAATTTATAAAACTCAA+GGG | - | chr7_3:16874964-16874983 | Msa1094800:intron | 15.0% |
!! | ATGTAATATAATAGGATATT+AGG | + | chr7_3:16875610-16875629 | None:intergenic | 15.0% |
!!! | ATTTTGATGGATATTATTTT+TGG | - | chr7_3:16875906-16875925 | Msa1094800:CDS | 15.0% |
!!! | TACTAAATGTTATTTGGAAT+TGG | + | chr7_3:16874062-16874081 | Msa1094790:CDS | 20.0% |
!!! | CAGTTTTTATTTTTCTGATT+TGG | + | chr7_3:16874098-16874117 | None:intergenic | 20.0% |
!! | AAGAAATAAAAGAAAAGTTG+TGG | + | chr7_3:16874387-16874406 | None:intergenic | 20.0% |
!! | TACTATTTCAATTAATCAAG+TGG | - | chr7_3:16874483-16874502 | Msa1094800:intron | 20.0% |
!!! | TAAAGTATTAGAGATATTAG+AGG | + | chr7_3:16874855-16874874 | None:intergenic | 20.0% |
!! | TCTAATATCTCTAATACTTT+AGG | - | chr7_3:16874854-16874873 | Msa1094800:intron | 20.0% |
!!! | GTTTTATAAATTTGAAAAGC+AGG | + | chr7_3:16874960-16874979 | None:intergenic | 20.0% |
!!! | AAATGATTTGTTGTGAATAA+TGG | + | chr7_3:16875211-16875230 | None:intergenic | 20.0% |
!!! | TGCTTTATATATATGCTTTT+TGG | - | chr7_3:16875441-16875460 | Msa1094800:intron | 20.0% |
!!! | TTTTGTTTTCTTACAAAGTT+TGG | - | chr7_3:16875877-16875896 | Msa1094800:intron | 20.0% |
!!! | AAAAATGAATCGGTTTTAAG+AGG | - | chr7_3:16873821-16873840 | Msa1094800:intron | 25.0% |
! | ATAATAGAAAGAAATGCTTC+AGG | - | chr7_3:16873892-16873911 | Msa1094800:intron | 25.0% |
! | TCAGAAAAATAAAAACTGAC+AGG | - | chr7_3:16874100-16874119 | Msa1094800:intron | 25.0% |
! | CAGAAAAATAAAAACTGACA+GGG | - | chr7_3:16874101-16874120 | Msa1094800:intron | 25.0% |
! | TTCACGTAGACAAATATATT+AGG | + | chr7_3:16874536-16874555 | None:intergenic | 25.0% |
! | AATATATTTGTCTACGTGAA+TGG | - | chr7_3:16874536-16874555 | Msa1094800:intron | 25.0% |
!! | AATTTTTCATCTATTGCACT+AGG | - | chr7_3:16874741-16874760 | Msa1094800:intron | 25.0% |
!! | GAACTCTTTGGAAATATATT+TGG | + | chr7_3:16874911-16874930 | None:intergenic | 25.0% |
!!! | ATATCACCTTGTTTTCATTT+TGG | - | chr7_3:16875047-16875066 | Msa1094800:intron | 25.0% |
! | ACTGATAGAAAAAACAAGAT+GGG | + | chr7_3:16875163-16875182 | None:intergenic | 25.0% |
! | ATCCACATATGATTAAATGA+TGG | + | chr7_3:16875186-16875205 | None:intergenic | 25.0% |
! | TTTGTTAGTCCTCTAAATTT+GGG | - | chr7_3:16875506-16875525 | Msa1094800:intron | 25.0% |
! | TATACTGGTATATTGTAAGT+TGG | + | chr7_3:16875693-16875712 | None:intergenic | 25.0% |
! | ACTTACAATATACCAGTATA+TGG | - | chr7_3:16875693-16875712 | Msa1094800:intron | 25.0% |
!! | AGTTTGGTATTAGATTTTGA+TGG | - | chr7_3:16875893-16875912 | Msa1094800:intron | 25.0% |
!!! | TTATTTTTGGCATGTTGATT+TGG | - | chr7_3:16875919-16875938 | Msa1094800:CDS | 25.0% |
AAATCAGCACGATTAAAAAC+AGG | - | chr7_3:16873553-16873572 | Msa1094800:CDS | 30.0% | |
TCATGATCACTACATACATA+TGG | - | chr7_3:16873630-16873649 | Msa1094800:intron | 30.0% | |
CATGATCACTACATACATAT+GGG | - | chr7_3:16873631-16873650 | Msa1094800:intron | 30.0% | |
ATTTAATACCTGTGACAACA+AGG | - | chr7_3:16874138-16874157 | Msa1094800:intron | 30.0% | |
TCTAAACAAATCTGCATAAC+AGG | - | chr7_3:16874186-16874205 | Msa1094800:intron | 30.0% | |
!! | TTTTATCGTTTGAGACACTT+TGG | + | chr7_3:16874226-16874245 | None:intergenic | 30.0% |
! | CTTGTTATGGATAAAGCTAA+GGG | + | chr7_3:16874297-16874316 | None:intergenic | 30.0% |
! | TCTTGTTATGGATAAAGCTA+AGG | + | chr7_3:16874298-16874317 | None:intergenic | 30.0% |
TAATGGTTATGCTCTTGTTA+TGG | + | chr7_3:16874310-16874329 | None:intergenic | 30.0% | |
AAGAAAAGTTGTGGTAATCA+AGG | + | chr7_3:16874378-16874397 | None:intergenic | 30.0% | |
! | TATGGGAAAATAGTGGAAAA+AGG | + | chr7_3:16874410-16874429 | None:intergenic | 30.0% |
ATATTTGGATATTTCTCTGC+TGG | + | chr7_3:16874896-16874915 | None:intergenic | 30.0% | |
! | TATTTCCAAAGAGTTCCTTT+TGG | - | chr7_3:16874915-16874934 | Msa1094800:intron | 30.0% |
! | ATTTCCAAAGAGTTCCTTTT+GGG | - | chr7_3:16874916-16874935 | Msa1094800:intron | 30.0% |
! | ATAAAACTCAAGGGTTTGTT+TGG | - | chr7_3:16874973-16874992 | Msa1094800:intron | 30.0% |
GAGTAACCAAAATGAAAACA+AGG | + | chr7_3:16875056-16875075 | None:intergenic | 30.0% | |
GACTGATAGAAAAAACAAGA+TGG | + | chr7_3:16875164-16875183 | None:intergenic | 30.0% | |
GTCCATCATTTAATCATATG+TGG | - | chr7_3:16875181-16875200 | Msa1094800:intron | 30.0% | |
! | TTCACAACAAATCATTTTGC+AGG | - | chr7_3:16875214-16875233 | Msa1094800:intron | 30.0% |
GCAATGATAGATGACATAAA+GGG | + | chr7_3:16875345-16875364 | None:intergenic | 30.0% | |
AGCAATGATAGATGACATAA+AGG | + | chr7_3:16875346-16875365 | None:intergenic | 30.0% | |
! | TCATGATTTTGCTTATCAAG+AGG | - | chr7_3:16875383-16875402 | Msa1094800:intron | 30.0% |
ACAAACAGAAAACCTAAAGA+AGG | + | chr7_3:16875484-16875503 | None:intergenic | 30.0% | |
!! | TTCTTTAGGTTTTCTGTTTG+TGG | - | chr7_3:16875483-16875502 | Msa1094800:intron | 30.0% |
! | GTTTGTTAGTCCTCTAAATT+TGG | - | chr7_3:16875505-16875524 | Msa1094800:intron | 30.0% |
TTGTTAGTCCTCTAAATTTG+GGG | - | chr7_3:16875507-16875526 | Msa1094800:intron | 30.0% | |
!! | TACTAGCTTGTGAAATTTTC+AGG | - | chr7_3:16875649-16875668 | Msa1094800:intron | 30.0% |
!! | AACAAGCTTTTTCCATATAC+TGG | + | chr7_3:16875708-16875727 | None:intergenic | 30.0% |
! | ACTGACTGTATTCTTTTCTA+TGG | - | chr7_3:16875729-16875748 | Msa1094800:intron | 30.0% |
! | GTATTCTTTTCTATGGACTT+AGG | - | chr7_3:16875736-16875755 | Msa1094800:intron | 30.0% |
AAGGAATAAACCTGTTGTAA+TGG | + | chr7_3:16875765-16875784 | None:intergenic | 30.0% | |
ATGTCTCTATTCAAAGCTAT+TGG | - | chr7_3:16875994-16876013 | Msa1094800:CDS | 30.0% | |
! | GGTGTTATCTCATGATCATA+TGG | - | chr7_3:16873842-16873861 | Msa1094800:intron | 35.0% |
AGAAAGAAATGCTTCAGGAA+AGG | - | chr7_3:16873897-16873916 | Msa1094800:intron | 35.0% | |
GAAAGAAATGCTTCAGGAAA+GGG | - | chr7_3:16873898-16873917 | Msa1094800:intron | 35.0% | |
AAAGAAATGCTTCAGGAAAG+GGG | - | chr7_3:16873899-16873918 | Msa1094800:intron | 35.0% | |
GGATCTGATGTCAATTCTAA+TGG | + | chr7_3:16874327-16874346 | None:intergenic | 35.0% | |
GAAAAGGAAATGACTGAGAA+GGG | + | chr7_3:16874348-16874367 | None:intergenic | 35.0% | |
AGAAAAGGAAATGACTGAGA+AGG | + | chr7_3:16874349-16874368 | None:intergenic | 35.0% | |
CTGTTGATATGGGAAAATAG+TGG | + | chr7_3:16874417-16874436 | None:intergenic | 35.0% | |
TCATGTGATGCTGTTGATAT+GGG | + | chr7_3:16874427-16874446 | None:intergenic | 35.0% | |
TTCATGTGATGCTGTTGATA+TGG | + | chr7_3:16874428-16874447 | None:intergenic | 35.0% | |
AATCAAGTGGTGAAGAACTT+TGG | - | chr7_3:16874496-16874515 | Msa1094800:intron | 35.0% | |
! | GTCATTCTCAACACACTTTT+CGG | - | chr7_3:16874669-16874688 | Msa1094800:intron | 35.0% |
ATTGAACCAGTTATGTATCC+AGG | + | chr7_3:16874784-16874803 | None:intergenic | 35.0% | |
TTATCCCAAAAGGAACTCTT+TGG | + | chr7_3:16874923-16874942 | None:intergenic | 35.0% | |
!!! | TTCCTTTTGGGATAAGTAAG+TGG | - | chr7_3:16874928-16874947 | Msa1094800:intron | 35.0% |
TTCCACTTACTTATCCCAAA+AGG | + | chr7_3:16874933-16874952 | None:intergenic | 35.0% | |
ACTCCTGATATTATGAAGCA+GGG | + | chr7_3:16875255-16875274 | None:intergenic | 35.0% | |
AACTCCTGATATTATGAAGC+AGG | + | chr7_3:16875256-16875275 | None:intergenic | 35.0% | |
TAAAGGGCAAATTCATGAAG+AGG | + | chr7_3:16875329-16875348 | None:intergenic | 35.0% | |
CATGCTTGTTTACCTTCTTT+AGG | - | chr7_3:16875469-16875488 | Msa1094800:intron | 35.0% | |
TGTTAGTCCTCTAAATTTGG+GGG | - | chr7_3:16875508-16875527 | Msa1094800:intron | 35.0% | |
! | AACTTCACAACTGATGATGT+TGG | - | chr7_3:16875536-16875555 | Msa1094800:intron | 35.0% |
GGTAATGTTCTTGCAATTAC+AGG | - | chr7_3:16875557-16875576 | Msa1094800:intron | 35.0% | |
TGATCTCCAGACATCTTCAT+TGG | + | chr7_3:16873584-16873603 | Msa1094790:intron | 40.0% | |
TCGAAGTCAGCTGTGATAAT+AGG | - | chr7_3:16873703-16873722 | Msa1094800:intron | 40.0% | |
CTGGACATTCAATATTGCTG+TGG | - | chr7_3:16873924-16873943 | Msa1094800:intron | 40.0% | |
AATATTGCTGTGGCTGACAT+AGG | - | chr7_3:16873934-16873953 | Msa1094800:intron | 40.0% | |
TAATCAAGGAGTGGGAGAAA+AGG | + | chr7_3:16874364-16874383 | None:intergenic | 40.0% | |
AGTTGTGGTAATCAAGGAGT+GGG | + | chr7_3:16874372-16874391 | None:intergenic | 40.0% | |
AAGTTGTGGTAATCAAGGAG+TGG | + | chr7_3:16874373-16874392 | None:intergenic | 40.0% | |
CCATCCAAAAACTCGTACTA+AGG | + | chr7_3:16874695-16874714 | None:intergenic | 40.0% | |
!! | CCTTAGTACGAGTTTTTGGA+TGG | - | chr7_3:16874692-16874711 | Msa1094800:intron | 40.0% |
! | GACTTTTGAATGTGTACACC+TGG | - | chr7_3:16874763-16874782 | Msa1094800:intron | 40.0% |
TGTACACCTGGATACATAAC+TGG | - | chr7_3:16874775-16874794 | Msa1094800:intron | 40.0% | |
TCTGATACCAAACAGACACT+AGG | - | chr7_3:16875122-16875141 | Msa1094800:intron | 40.0% | |
CTGATACCAAACAGACACTA+GGG | - | chr7_3:16875123-16875142 | Msa1094800:intron | 40.0% | |
TTGAATCCCTAGTGTCTGTT+TGG | + | chr7_3:16875132-16875151 | None:intergenic | 40.0% | |
AGACACTAGGGATTCAACTA+TGG | - | chr7_3:16875135-16875154 | Msa1094800:intron | 40.0% | |
TTGCCCTGCTTCATAATATC+AGG | - | chr7_3:16875249-16875268 | Msa1094800:intron | 40.0% | |
GTTAGTCCTCTAAATTTGGG+GGG | - | chr7_3:16875509-16875528 | Msa1094800:intron | 40.0% | |
TTCAATCCCCCCAAATTTAG+AGG | + | chr7_3:16875518-16875537 | None:intergenic | 40.0% | |
ACTTAGGTGACCATTACAAC+AGG | - | chr7_3:16875752-16875771 | Msa1094800:intron | 40.0% | |
TGAATACACTTACCACTGCT+CGG | + | chr7_3:16875796-16875815 | None:intergenic | 40.0% | |
!! | GGCATGTTGATTTGGAAAAC+AGG | - | chr7_3:16875927-16875946 | Msa1094800:CDS | 40.0% |
AAACAGGAACAACACCAAAG+AGG | - | chr7_3:16875943-16875962 | Msa1094800:CDS | 40.0% | |
AACAGGAACAACACCAAAGA+GGG | - | chr7_3:16875944-16875963 | Msa1094800:CDS | 40.0% | |
GAAGATGTCTGGAGATCACA+AGG | - | chr7_3:16873586-16873605 | Msa1094800:CDS | 45.0% | |
CACTACATACATATGGGAGC+TGG | - | chr7_3:16873637-16873656 | Msa1094800:intron | 45.0% | |
TACATACATATGGGAGCTGG+AGG | - | chr7_3:16873640-16873659 | Msa1094800:intron | 45.0% | |
ATACCTGTGACAACAAGGAG+TGG | - | chr7_3:16874143-16874162 | Msa1094800:intron | 45.0% | |
TGACAACAAGGAGTGGTACT+TGG | - | chr7_3:16874150-16874169 | Msa1094800:intron | 45.0% | |
! | TCGGCCTTAGTACGAGTTTT+TGG | - | chr7_3:16874688-16874707 | Msa1094800:intron | 45.0% |
ATGAAGCAGGGCAAGAAGTA+AGG | + | chr7_3:16875243-16875262 | None:intergenic | 45.0% | |
ACAGGAACAACACCAAAGAG+GGG | - | chr7_3:16875945-16875964 | Msa1094800:CDS | 45.0% | |
GTCTCGCCAATGAAGATGTC+TGG | - | chr7_3:16873575-16873594 | Msa1094800:CDS | 50.0% | |
!! | CAAGGGCGTTTGTTTGGTTG+CGG | - | chr7_3:16873663-16873682 | Msa1094800:intron | 50.0% |
ATGCTTCAGGAAAGGGGATC+TGG | - | chr7_3:16873905-16873924 | Msa1094800:intron | 50.0% | |
! | GTACCACTCCTTGTTGTCAC+AGG | + | chr7_3:16874149-16874168 | None:intergenic | 50.0% |
CCACTGCTCGGTTCTGTATA+AGG | + | chr7_3:16875784-16875803 | None:intergenic | 50.0% | |
CCTTATACAGAACCGAGCAG+TGG | - | chr7_3:16875781-16875800 | Msa1094800:intron | 50.0% | |
TTCCATTAGCTGCCCCTCTT+TGG | + | chr7_3:16875960-16875979 | None:intergenic | 50.0% | |
AAAGCTATTGGACCTGCTGC+AGG | - | chr7_3:16876006-16876025 | Msa1094800:CDS | 50.0% | |
ACATATGGGAGCTGGAGGCA+AGG | - | chr7_3:16873645-16873664 | Msa1094800:intron | 55.0% | |
CATATGGGAGCTGGAGGCAA+GGG | - | chr7_3:16873646-16873665 | Msa1094800:intron | 55.0% | |
!! | TGGAGGCAAGGGCGTTTGTT+TGG | - | chr7_3:16873657-16873676 | Msa1094800:intron | 55.0% |
CACCAAAGAGGGGCAGCTAA+TGG | - | chr7_3:16875955-16875974 | Msa1094800:CDS | 55.0% | |
CACATTGTACCACCTGCAGC+AGG | + | chr7_3:16876021-16876040 | None:intergenic | 55.0% | |
GCTATTGGACCTGCTGCAGG+TGG | - | chr7_3:16876009-16876028 | Msa1094800:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 16873547 | 16876047 | 16873547 | ID=Msa1094800;Name=Msa1094800 |
chr7_3 | mRNA | 16873547 | 16876047 | 16873547 | ID=Msa1094800-mRNA-1;Parent=Msa1094800;Name=Msa1094800-mRNA-1;_AED=0.36;_eAED=0.40;_QI=0|0|0|0.8|1|1|5|0|188 |
chr7_3 | exon | 16875905 | 16876047 | 16875905 | ID=Msa1094800-mRNA-1:exon:3770;Parent=Msa1094800-mRNA-1 |
chr7_3 | exon | 16874190 | 16874358 | 16874190 | ID=Msa1094800-mRNA-1:exon:3769;Parent=Msa1094800-mRNA-1 |
chr7_3 | exon | 16873993 | 16874103 | 16873993 | ID=Msa1094800-mRNA-1:exon:3768;Parent=Msa1094800-mRNA-1 |
chr7_3 | exon | 16873792 | 16873836 | 16873792 | ID=Msa1094800-mRNA-1:exon:3767;Parent=Msa1094800-mRNA-1 |
chr7_3 | exon | 16873547 | 16873645 | 16873547 | ID=Msa1094800-mRNA-1:exon:3766;Parent=Msa1094800-mRNA-1 |
chr7_3 | CDS | 16875905 | 16876047 | 16875905 | ID=Msa1094800-mRNA-1:cds;Parent=Msa1094800-mRNA-1 |
chr7_3 | CDS | 16874190 | 16874358 | 16874190 | ID=Msa1094800-mRNA-1:cds;Parent=Msa1094800-mRNA-1 |
chr7_3 | CDS | 16873993 | 16874103 | 16873993 | ID=Msa1094800-mRNA-1:cds;Parent=Msa1094800-mRNA-1 |
chr7_3 | CDS | 16873792 | 16873836 | 16873792 | ID=Msa1094800-mRNA-1:cds;Parent=Msa1094800-mRNA-1 |
chr7_3 | CDS | 16873547 | 16873645 | 16873547 | ID=Msa1094800-mRNA-1:cds;Parent=Msa1094800-mRNA-1 |
Gene Sequence |
Protein sequence |