AlfalfaGEDB | Msa1122170

M. sativa cultivar zhongmu-4 / Msa1122170

KEGG: -
GO: -
PFAM: PF01055.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122170	XP_003624991.1	77.486	533	19	4	1	432	1	533	0.0	781

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122170	sp\|P32138\|SQASE_ECOLI	29.572	257	126	4	224	432	115	364	5.36e-28	120

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122170	G7KQR9	77.486	533	19	4	1	432	1	533	0.0	781

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0388710	Msa1122170	0.855407	6.439694e-62	-8.615850e-47
Msa1122170	Msa1160580	0.873582	1.315364e-67	-8.615850e-47
Msa1122170	Msa1419860	0.830447	2.922433e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122170	MtrunA17_Chr7g0256191	77.486	533	19	4	1	432	1	533	0.0	781

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 195 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAAAGAGTTCAATA+GGG	0.442082	7_3:-72490938	Msa1122170:CDS
AAAATCATTGCCAATTGAAA+AGG	0.409045	7_3:+72491617	None:intergenic
AAAATGCCCTCCATTGATTG+TGG	0.594023	7_3:+72491581	None:intergenic
AAACAGGAAGCAGCACAGAG+AGG	0.715491	7_3:-72487435	Msa1122170:intron
AAACTCTGTCACACTTTGCG+CGG	0.598621	7_3:-72487605	Msa1122170:three_prime_UTR
AAACTGTGCAGGATTGGGTA+GGG	0.594862	7_3:-72489761	Msa1122170:intron
AAATATAAGGATTGACTATT+CGG	0.331743	7_3:-72487812	Msa1122170:three_prime_UTR
AAATGTTCAATTAGGTCACA+AGG	0.629845	7_3:+72490014	None:intergenic
AAGAAAATATGTCATATTGC+AGG	0.429741	7_3:+72487949	None:intergenic
AAGCACTGGTAGCCTTCCAA+TGG	0.592511	7_3:+72489983	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCTTGTGAAGATAAAGCTT+TGG	+	chr7_3:72486953-72486972	None:intergenic	30.0%
GGAATATGAAGTTGAAGATT+TGG	-	chr7_3:72487236-72487255	Msa1122170:three_prime_UTR	30.0%
CAATACCTTGCATAAACAAA+TGG	+	chr7_3:72487399-72487418	None:intergenic	30.0%
CATTTGTTTATGCAAGGTAT+TGG	-	chr7_3:72487397-72487416	Msa1122170:three_prime_UTR	30.0%
GGTTAAGTAGTAGAAAAAAG+AGG	-	chr7_3:72487547-72487566	Msa1122170:intron	30.0%
AGTAGTAGAAAAAAGAGGAT+AGG	-	chr7_3:72487552-72487571	Msa1122170:intron	30.0%
CAAAACCAAAAGAGTTCAAT+AGG	-	chr7_3:72487655-72487674	Msa1122170:three_prime_UTR	30.0%
ATATGAATTTCAAGGGGAAA+AGG	-	chr7_3:72487742-72487761	Msa1122170:three_prime_UTR	30.0%
TATGAATTTCAAGGGGAAAA+GGG	-	chr7_3:72487743-72487762	Msa1122170:three_prime_UTR	30.0%
CCTTGTTCTTGAACTAAAAT+AGG	+	chr7_3:72487771-72487790	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	72486844	72491772	72486844	ID=Msa1122170;Name=Msa1122170
chr7_3	mRNA	72486844	72491772	72486844	ID=Msa1122170-mRNA-1;Parent=Msa1122170;Name=Msa1122170-mRNA-1;_AED=0.10;_eAED=0.11;_QI=0\|0.44\|0.4\|1\|0.44\|0.3\|10\|1575\|440
chr7_3	exon	72486844	72487451	72486844	ID=Msa1122170-mRNA-1:exon:18889;Parent=Msa1122170-mRNA-1
chr7_3	exon	72487554	72488385	72487554	ID=Msa1122170-mRNA-1:exon:18888;Parent=Msa1122170-mRNA-1
chr7_3	exon	72489157	72489411	72489157	ID=Msa1122170-mRNA-1:exon:18887;Parent=Msa1122170-mRNA-1
chr7_3	exon	72489617	72489772	72489617	ID=Msa1122170-mRNA-1:exon:18886;Parent=Msa1122170-mRNA-1
chr7_3	exon	72489866	72490081	72489866	ID=Msa1122170-mRNA-1:exon:18885;Parent=Msa1122170-mRNA-1
chr7_3	exon	72490783	72490991	72490783	ID=Msa1122170-mRNA-1:exon:18884;Parent=Msa1122170-mRNA-1
chr7_3	exon	72491043	72491203	72491043	ID=Msa1122170-mRNA-1:exon:18883;Parent=Msa1122170-mRNA-1
chr7_3	exon	72491270	72491492	72491270	ID=Msa1122170-mRNA-1:exon:18882;Parent=Msa1122170-mRNA-1
chr7_3	exon	72491503	72491510	72491503	ID=Msa1122170-mRNA-1:exon:18881;Parent=Msa1122170-mRNA-1
chr7_3	exon	72491543	72491772	72491543	ID=Msa1122170-mRNA-1:exon:18880;Parent=Msa1122170-mRNA-1
chr7_3	CDS	72491543	72491772	72491543	ID=Msa1122170-mRNA-1:cds;Parent=Msa1122170-mRNA-1
chr7_3	CDS	72491503	72491510	72491503	ID=Msa1122170-mRNA-1:cds;Parent=Msa1122170-mRNA-1
chr7_3	CDS	72491270	72491492	72491270	ID=Msa1122170-mRNA-1:cds;Parent=Msa1122170-mRNA-1
chr7_3	CDS	72491043	72491203	72491043	ID=Msa1122170-mRNA-1:cds;Parent=Msa1122170-mRNA-1
chr7_3	CDS	72490783	72490991	72490783	ID=Msa1122170-mRNA-1:cds;Parent=Msa1122170-mRNA-1
chr7_3	CDS	72489866	72490081	72489866	ID=Msa1122170-mRNA-1:cds;Parent=Msa1122170-mRNA-1
chr7_3	CDS	72489617	72489772	72489617	ID=Msa1122170-mRNA-1:cds;Parent=Msa1122170-mRNA-1
chr7_3	CDS	72489292	72489411	72489292	ID=Msa1122170-mRNA-1:cds;Parent=Msa1122170-mRNA-1
chr7_3	three_prime_UTR	72489157	72489291	72489157	ID=Msa1122170-mRNA-1:three_prime_utr;Parent=Msa1122170-mRNA-1
chr7_3	three_prime_UTR	72487554	72488385	72487554	ID=Msa1122170-mRNA-1:three_prime_utr;Parent=Msa1122170-mRNA-1
chr7_3	three_prime_UTR	72486844	72487451	72486844	ID=Msa1122170-mRNA-1:three_prime_utr;Parent=Msa1122170-mRNA-1

Gene Sequence

>Msa1122170

ATGGCAATCCTTAAAATAACCAAAAAACATCACAAACGTTTCAACAATCCTTTCCCTTCTGCACCAACCACCATTCCTAATGTCCAAGGCTCTCTATTCATCAATTCCAAAGCTTTATCTTCACAAGATCAAACCTTTTCAATTGGCAATGATTTTCAGCTTTCTTGGTCCACAATCAATGGAGGGCATTTTTCAATCTCACACCTTTCTCAGAAAACTAGACCAATTTGCTGCAGTGAGATTGAAGAAAGTAGAGGAGCTTTTGTTGTTAAAGATAAAGATGTTCATTTGATATGTAATCATCAAACCATTGATGATATTAGGATTATCAATGAATTTGGTGATCATTTGGAATATGAAGTTGAAGATTTGGATCAGAAAAGTTATGCAGAAGAGACAAAGTTTCCTCCTACTTTGTTGATCACAGGAAGGCTTTTCAATATGAGTAAGAAGAAGAAAAGGTATTGGGTTTTGTTCAATCAGAAAAACAAGCATGAGATTGGTTTTCAAGTGAAGATTGAGAAACTTAATTTTAGTTCGAGTAATAAGGTGGTGTCTCCAGAAGCTTCTGGAATTTACAAGGGTTTCAAGAAGAGGTTAAGTAGTAGAAAAAAGAGGATAGTGGAGGATGAAAATGGAGTGATGGAAATACCAAAACCAAAAGAGTTCAATAGGGTTTGGTTGACATATGCAAGTGATGAGAATGAGAGGTTTTATGGTTTTGGGGAGCAATTTTCTCATATGAATTTCAAGGGGAAAAGGGTACCTATTTTAGTTCAAGAACAAGGTATCGGAAGAGGTGATCAACCTATCACTTTAGCTGCTAACTTGATATACGGAAACTCAATTGAAGGGCGGATATTGCATGGGAACACTCCTTGTGACCTAATTGAACATTTCACAGAAACCATTGGAAGGCTACCAGTGCTTCCAGAGTGGATAATATCTGGGGCTATAGTTGGAATGCAGGGTGGCACCGATGCTGTACGCCGTGTTTGGGATGAATTAAGAACTTATGACGTTCCTGTCTCAGGATTTTGGTTACAGGATTGGGTAGGGCAGAGAGAAACCATGATTGGCTCACAACTTTGGTGGAATTGGGAAGTGGATGAACAAAGATATTGGGGTTGGAAGGAACTTATCAAAGATCTCAGCACTCAAAACATAAAAGTTATGACGTATTGCAATCCCTGTCTAGCTCCGGTTGATGAGAAGAATAACAAAAAGAGAAACCTTTTTGAGGAGGCAAAACAGTTGGACATATTGGTGAAAGACAATAATGGGAATGCATATATATGGTTCCAAATACTGCCTTCGATGTAG

Protein sequence

>Msa1122170

MAILKITKKHHKRFNNPFPSAPTTIPNVQGSLFINSKALSSQDQTFSIGNDFQLSWSTINGGHFSISHLSQKTRPICCSEIEESRGAFVVKDKDVHLICNHQTIDDIRIINEFGDHLEYEVEDLDQKSYAEETKFPPTLLITGRLFNMSKKKKRYWVLFNQKNKHEIGFQVKIEKLNFSSSNKVVSPEASGIYKGFKKRLSSRKKRIVEDENGVMEIPKPKEFNRVWLTYASDENERFYGFGEQFSHMNFKGKRVPILVQEQGIGRGDQPITLAANLIYGNSIEGRILHGNTPCDLIEHFTETIGRLPVLPEWIISGAIVGMQGGTDAVRRVWDELRTYDVPVSGFWLQDWVGQRETMIGSQLWWNWEVDEQRYWGWKELIKDLSTQNIKVMTYCNPCLAPVDEKNNKKRNLFEEAKQLDILVKDNNGNAYIWFQILPSM*