AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1123580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123580 MtrunA17_Chr7g0262991 99.563 458 2 0 1 458 1 458 0.0 949
Msa1123580 MtrunA17_Chr7g0254441 85.153 458 62 2 1 458 1 452 0.0 794
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123580 AT4G11420.1 83.696 460 75 0 1 460 1 460 0.0 813

Find 96 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAATAAAATTTCGAAATT+AGG 0.044115 7_3:+74536694 Msa1123580:CDS
TCAAGTTGACAGAAATATTT+TGG 0.125020 7_3:+74535753 Msa1123580:CDS
TAAATAAAATTTCGAAATTA+GGG 0.174166 7_3:+74536695 Msa1123580:CDS
TGGCTAATCTTAACAAATAT+CGG 0.236726 7_3:+74535452 Msa1123580:CDS
AATTTCTCTGGGAAACTTAC+AGG 0.251310 7_3:+74534730 Msa1123580:CDS
AGATACAATTGCAAGCTTTC+AGG 0.258059 7_3:-74535505 None:intergenic
GCTTATACTGCTTACAAAAC+TGG 0.261310 7_3:-74535384 None:intergenic
ATTGCGGAACAATTCGAAAT+TGG 0.282749 7_3:+74534767 Msa1123580:CDS
CCCCATGGTTTAAATTTCTC+TGG 0.287477 7_3:+74534718 Msa1123580:CDS
AGATCTGTTGAAGATATTCA+TGG 0.321278 7_3:+74535674 Msa1123580:CDS
TGAAATTATCAGAAATCATT+TGG 0.347794 7_3:+74535432 Msa1123580:CDS
ATCTGAACGTACTTTGTAAC+GGG 0.356356 7_3:-74533293 None:intergenic
AATACCACTTCTCTGCTATC+AGG 0.360887 7_3:-74536016 None:intergenic
AAAGCTCAGCGGCTGCTTAT+CGG 0.378013 7_3:-74533149 None:intergenic
GAAAGACATTTACTATCTCT+TGG 0.380647 7_3:+74536624 Msa1123580:CDS
CACTTCTCTGCTATCAGGCT+TGG 0.385807 7_3:-74536011 None:intergenic
TTGAGGATGGCTAATCTCAT+AGG 0.394508 7_3:+74535974 Msa1123580:CDS
TACCTTGAGGTTGCTACAAC+AGG 0.401938 7_3:+74536792 Msa1123580:CDS
GCCGTCACTTCTTGCTGAAC+TGG 0.403998 7_3:+74536139 Msa1123580:CDS
ATGACTTGGAGGCTGATAAA+AGG 0.425719 7_3:+74534625 Msa1123580:CDS
ACAGTCATCAAGGATGGTTT+TGG 0.428141 7_3:-74535722 None:intergenic
TACTGAGAAAATTGCACCTC+TGG 0.434824 7_3:-74536745 None:intergenic
TTGTCTTTCCCCAGCTCTCA+AGG 0.435752 7_3:+74536117 Msa1123580:intron
CCCAGAGAAATTTAAACCAT+GGG 0.444000 7_3:-74534719 None:intergenic
GGCTAATCTTAACAAATATC+GGG 0.445404 7_3:+74535453 Msa1123580:CDS
GGAATGCTTGCAGGCTTCAA+AGG 0.447638 7_3:+74536573 Msa1123580:intron
AGCTGAACAAGCACGTAGTC+AGG 0.448632 7_3:+74534572 Msa1123580:CDS
CGTACTTTGTAACGGGTTTG+TGG 0.453793 7_3:-74533286 None:intergenic
CCTTGATGTGGATGACTTGG+AGG 0.468408 7_3:+74534614 Msa1123580:CDS
CACTGAACTTGAACTCTGGC+AGG 0.470180 7_3:+74535558 Msa1123580:CDS
CCCATGGTTTAAATTTCTCT+GGG 0.476609 7_3:+74534719 Msa1123580:CDS
GATCAATGTCGGGCAGAAGC+AGG 0.485742 7_3:+74534326 Msa1123580:CDS
GGAAAATGAATTTCTACCCT+CGG 0.491238 7_3:+74536645 Msa1123580:CDS
TGAGGCCATCCTTAGCAAAC+CGG 0.492540 7_3:-74534464 None:intergenic
TGTCCCAGCACTTGAAAAGT+TGG 0.493339 7_3:+74536768 Msa1123580:CDS
AGGAAAGGATAGATCTGATC+GGG 0.499212 7_3:+74534686 Msa1123580:CDS
GAATGCTTGCAGGCTTCAAA+GGG 0.501670 7_3:+74536574 Msa1123580:intron
AGTTATGTTAGTGGCGAGAA+AGG 0.506859 7_3:+74534666 Msa1123580:CDS
GAATGTTAGTTCACTGGAGG+AGG 0.507826 7_3:+74534515 Msa1123580:CDS
GCAAGTGAATGTTAGTTCAC+TGG 0.510294 7_3:+74534509 Msa1123580:CDS
TTACAGAGTTGATCAATGTC+GGG 0.511765 7_3:+74534316 Msa1123580:intron
ATCGGGAGCTTGTTACCCCA+TGG 0.512764 7_3:+74534703 Msa1123580:CDS
TTGCCACTGAACTTGAACTC+TGG 0.514941 7_3:+74535554 Msa1123580:CDS
TTTACAGAGTTGATCAATGT+CGG 0.516692 7_3:+74534315 Msa1123580:intron
TACAAAACTGGAAAGCTCGA+TGG 0.518952 7_3:-74535372 None:intergenic
GTTCGCAACAAAGCAAAAGC+TGG 0.526707 7_3:+74533231 Msa1123580:five_prime_UTR
CCTCCAAGTCATCCACATCA+AGG 0.528214 7_3:-74534614 None:intergenic
GAGGAAAGGCCGGTTTGCTA+AGG 0.536219 7_3:+74534455 Msa1123580:CDS
CTTTCAGGAGCAGAAAGGTC+AGG 0.536301 7_3:-74535490 None:intergenic
AGCCCTTGATGTGGATGACT+TGG 0.538804 7_3:+74534611 Msa1123580:CDS
CACATCAAGGGCTTCTTCCA+AGG 0.539139 7_3:-74534601 None:intergenic
TCCCAGAGAAATTTAAACCA+TGG 0.540858 7_3:-74534720 None:intergenic
ATTTATATCATGCTTATGCA+TGG 0.541184 7_3:+74535789 Msa1123580:CDS
TCGCGCATGGCAGAAAACAC+TGG 0.542348 7_3:+74534392 Msa1123580:CDS
ACAAAACTGGAAAGCTCGAT+GGG 0.544319 7_3:-74535371 None:intergenic
AAAGGTCAGGTCGGTCTCGT+TGG 0.544555 7_3:-74535477 None:intergenic
TAACTCAGCATCAAGTCCTC+TGG 0.547400 7_3:-74534648 None:intergenic
ACAAGCACGTAGTCAGGCTC+AGG 0.550900 7_3:+74534578 Msa1123580:CDS
AATCTGAACGTACTTTGTAA+CGG 0.551731 7_3:-74533294 None:intergenic
AATATCTTCAACAGATCTGA+AGG 0.553619 7_3:-74535669 None:intergenic
AATAAAATTTCGAAATTAGG+GGG 0.554003 7_3:+74536697 Msa1123580:CDS
CCTCCTCATGATCGCACTCA+CGG 0.557679 7_3:+74535911 Msa1123580:CDS
GCAAGCTTTCAGGAGCAGAA+AGG 0.561168 7_3:-74535495 None:intergenic
GACATAGTAAACAGTCATCA+AGG 0.561692 7_3:-74535732 None:intergenic
CTTCGCTTCATCTGTTCCAG+AGG 0.566768 7_3:+74536729 Msa1123580:CDS
GTGTTGACATGAGGAAAGGC+CGG 0.572499 7_3:+74534445 Msa1123580:CDS
TTGATGCTGAGTTATGTTAG+TGG 0.572965 7_3:+74534657 Msa1123580:CDS
AAATAAAATTTCGAAATTAG+GGG 0.583549 7_3:+74536696 Msa1123580:CDS
CTCCAAGTCATCCACATCAA+GGG 0.586487 7_3:-74534613 None:intergenic
AAGGAAAGGATAGATCTGAT+CGG 0.586809 7_3:+74534685 Msa1123580:CDS
ATATTATACGATACTGAATG+AGG 0.586986 7_3:-74534482 None:intergenic
CTTTGTGTTGACATGAGGAA+AGG 0.590890 7_3:+74534441 Msa1123580:CDS
AAAGGCCGGTTTGCTAAGGA+TGG 0.591699 7_3:+74534459 Msa1123580:CDS
AATGCTCTCAAAAGAGCAGA+AGG 0.596365 7_3:+74534192 Msa1123580:CDS
ACCAGTTCAGCAAGAAGTGA+CGG 0.599796 7_3:-74536140 None:intergenic
GCACCGTGAGTGCGATCATG+AGG 0.600087 7_3:-74535914 None:intergenic
CACCTGTTGTAGCAACCTCA+AGG 0.603518 7_3:-74536794 None:intergenic
CTCTGGAACAGATGAAGCGA+AGG 0.604213 7_3:-74536728 None:intergenic
TATTCATGGATTAATGTGCA+TGG 0.604460 7_3:+74535688 Msa1123580:CDS
CAAGCCTGATAGCAGAGAAG+TGG 0.606240 7_3:+74536012 Msa1123580:CDS
CCAGAGAAATTTAAACCATG+GGG 0.611745 7_3:-74534718 None:intergenic
TTGAAAAGTTGGCTACCTTG+AGG 0.612827 7_3:+74536779 Msa1123580:CDS
CTGCCAGAGTTCAAGTTCAG+TGG 0.619555 7_3:-74535557 None:intergenic
TGTTAGTGGCGAGAAAGGAA+AGG 0.620416 7_3:+74534671 Msa1123580:CDS
CTTCGAAAAGATATCGCGCA+TGG 0.628020 7_3:+74534379 Msa1123580:CDS
AAAAGAGCGAAATTTGAGGA+TGG 0.632531 7_3:+74535961 Msa1123580:CDS
TAGTAAACAGTCATCAAGGA+TGG 0.633737 7_3:-74535728 None:intergenic
CCGTGAGTGCGATCATGAGG+AGG 0.635048 7_3:-74535911 None:intergenic
GGACAGTGCTTGAGATATTG+CGG 0.635062 7_3:+74534751 Msa1123580:CDS
GCAACAAAGCAAAAGCTGGA+CGG 0.658554 7_3:+74533235 Msa1123580:five_prime_UTR
TCGAGCTTTGTGTTGACATG+AGG 0.663686 7_3:+74534436 Msa1123580:CDS
GCAAGTGCGCAAAAGCTCAG+CGG 0.665186 7_3:-74533160 None:intergenic
AGTGAATGTTAGTTCACTGG+AGG 0.672817 7_3:+74534512 Msa1123580:CDS
CAGGAGCAGAAAGGTCAGGT+CGG 0.674789 7_3:-74535486 None:intergenic
CTTGGAAGAAGCCCTTGATG+TGG 0.684167 7_3:+74534602 Msa1123580:CDS
GGAGGCTGATAAAAGGCCAG+AGG 0.691381 7_3:+74534632 Msa1123580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGAATCAAAAAATAA+CGG - chr7_3:74533655-74533674 None:intergenic 10.0%
!!! GAATTATTTTAATTTTAACA+TGG + chr7_3:74535039-74535058 Msa1123580:intron 10.0%
!! TAGTTAAAAAACAATAATAT+AGG + chr7_3:74535289-74535308 Msa1123580:intron 10.0%
!! TAAATAAAATTTCGAAATTA+GGG + chr7_3:74536695-74536714 Msa1123580:CDS 10.0%
!! ATACAAAAAAATTAAAAATC+TGG + chr7_3:74536978-74536997 Msa1123580:intron 10.0%
!! TAAAAAATTGTAAAAAAGTT+CGG + chr7_3:74537232-74537251 Msa1123580:intron 10.0%
!!! TTTAATTTTCATATTGTAAT+TGG - chr7_3:74537397-74537416 None:intergenic 10.0%
!! TAATGGTAAAAACTTATTAT+GGG - chr7_3:74533110-74533129 None:intergenic 15.0%
!! TTAATGGTAAAAACTTATTA+TGG - chr7_3:74533111-74533130 None:intergenic 15.0%
!!! AATATCAGTTTTATTGTTAA+TGG + chr7_3:74533486-74533505 Msa1123580:intron 15.0%
!! AATTTACAATTTGCAAAATT+TGG + chr7_3:74533832-74533851 Msa1123580:intron 15.0%
!! TTAGAATTATCTAGAAAAAA+TGG - chr7_3:74534038-74534057 None:intergenic 15.0%
!! AAACATAAATATCATCAAAT+TGG - chr7_3:74535013-74535032 None:intergenic 15.0%
!! TTAAAAAACAATAATATAGG+AGG + chr7_3:74535292-74535311 Msa1123580:intron 15.0%
!!! TTTTAATTTTTGCATTTCAT+GGG + chr7_3:74536317-74536336 Msa1123580:intron 15.0%
!!! TTTCGAAATTTTATTTAGAA+GGG - chr7_3:74536692-74536711 None:intergenic 15.0%
!!! ATTTCGAAATTTTATTTAGA+AGG - chr7_3:74536693-74536712 None:intergenic 15.0%
!! CTAAATAAAATTTCGAAATT+AGG + chr7_3:74536694-74536713 Msa1123580:CDS 15.0%
!! AAATAAAATTTCGAAATTAG+GGG + chr7_3:74536696-74536715 Msa1123580:CDS 15.0%
!! ATTAAAATGATTTAATGATG+TGG - chr7_3:74537039-74537058 None:intergenic 15.0%
!!! TTTTTGCAAAATAAAAAAAC+TGG + chr7_3:74537325-74537344 Msa1123580:intron 15.0%
!! AAAATCGAAGGAAAAAAAAA+GGG - chr7_3:74533322-74533341 None:intergenic 20.0%
!! TTTCAGTTTATGATTATCAT+CGG + chr7_3:74533551-74533570 Msa1123580:intron 20.0%
!!! TTGTGTTTTACTATTGTTTT+TGG + chr7_3:74534065-74534084 Msa1123580:intron 20.0%
!! AAGAAAAATTACAGCATATA+AGG - chr7_3:74534796-74534815 None:intergenic 20.0%
!! TGAAATTATCAGAAATCATT+TGG + chr7_3:74535432-74535451 Msa1123580:CDS 20.0%
!! TCAGATATTTATATACTACT+GGG - chr7_3:74536063-74536082 None:intergenic 20.0%
!! ATCAGATATTTATATACTAC+TGG - chr7_3:74536064-74536083 None:intergenic 20.0%
!!! TATTTTGTCCTTCAAATATT+TGG + chr7_3:74536243-74536262 Msa1123580:intron 20.0%
!!! CTTTTAATTTTTGCATTTCA+TGG + chr7_3:74536316-74536335 Msa1123580:intron 20.0%
!!! TTCGAAATTTTATTTAGAAG+GGG - chr7_3:74536691-74536710 None:intergenic 20.0%
!! AATAAAATTTCGAAATTAGG+GGG + chr7_3:74536697-74536716 Msa1123580:CDS 20.0%
! GAAAATCGAAGGAAAAAAAA+AGG - chr7_3:74533323-74533342 None:intergenic 25.0%
!! CTTTCATTATCACTATCTTT+TGG + chr7_3:74533902-74533921 Msa1123580:intron 25.0%
! ACAGCTAATTACATTACAAT+TGG + chr7_3:74533934-74533953 Msa1123580:intron 25.0%
! TCTTAGTTCATGAATAACAT+CGG + chr7_3:74533975-74533994 Msa1123580:intron 25.0%
! TTGATTATCACTCTATTTAC+AGG + chr7_3:74534120-74534139 Msa1123580:intron 25.0%
! TGATTATCACTCTATTTACA+GGG + chr7_3:74534121-74534140 Msa1123580:intron 25.0%
! ATATTATACGATACTGAATG+AGG - chr7_3:74534485-74534504 None:intergenic 25.0%
! AGATTAATTGCTTGTCATTA+GGG + chr7_3:74535223-74535242 Msa1123580:intron 25.0%
! TGGCTAATCTTAACAAATAT+CGG + chr7_3:74535452-74535471 Msa1123580:CDS 25.0%
!!! TCAAGTTGACAGAAATATTT+TGG + chr7_3:74535753-74535772 Msa1123580:CDS 25.0%
! ATTTATATCATGCTTATGCA+TGG + chr7_3:74535789-74535808 Msa1123580:CDS 25.0%
! CAACAAAAATCTTAGTCAAA+AGG + chr7_3:74535841-74535860 Msa1123580:CDS 25.0%
! AAAACAGAAACAAAAGCAAA+TGG - chr7_3:74536099-74536118 None:intergenic 25.0%
AATCTGAACGTACTTTGTAA+CGG - chr7_3:74533297-74533316 None:intergenic 30.0%
GAGAATGAAAAGAAAATCGA+AGG - chr7_3:74533334-74533353 None:intergenic 30.0%
!! TATGATTATCATCGGTTTAG+TGG + chr7_3:74533559-74533578 Msa1123580:intron 30.0%
!! ATGATTATCATCGGTTTAGT+GGG + chr7_3:74533560-74533579 Msa1123580:intron 30.0%
GCTAATTACATTACAATTGG+TGG + chr7_3:74533937-74533956 Msa1123580:intron 30.0%
! TTTACAGAGTTGATCAATGT+CGG + chr7_3:74534315-74534334 Msa1123580:intron 30.0%
TAACATTTGCCATATTGATG+TGG + chr7_3:74534921-74534940 Msa1123580:intron 30.0%
GAGATTAATTGCTTGTCATT+AGG + chr7_3:74535222-74535241 Msa1123580:intron 30.0%
GGCTAATCTTAACAAATATC+GGG + chr7_3:74535453-74535472 Msa1123580:CDS 30.0%
TCTTTCCTTAAATCTTCACA+AGG + chr7_3:74535595-74535614 Msa1123580:intron 30.0%
AAACACCTTGTGAAGATTTA+AGG - chr7_3:74535603-74535622 None:intergenic 30.0%
AATATCTTCAACAGATCTGA+AGG - chr7_3:74535672-74535691 None:intergenic 30.0%
AGATCTGTTGAAGATATTCA+TGG + chr7_3:74535674-74535693 Msa1123580:CDS 30.0%
! TATTCATGGATTAATGTGCA+TGG + chr7_3:74535688-74535707 Msa1123580:CDS 30.0%
ATGAAAAAGAGCGAAATTTG+AGG + chr7_3:74535957-74535976 Msa1123580:CDS 30.0%
CAACAACACCAAATATTTGA+AGG - chr7_3:74536254-74536273 None:intergenic 30.0%
!! CTTCAAATATTTGGTGTTGT+TGG + chr7_3:74536252-74536271 Msa1123580:intron 30.0%
! AATTTTTGCATTTCATGGGT+TGG + chr7_3:74536321-74536340 Msa1123580:intron 30.0%
TACATTATTTCCTGAACCTT+TGG + chr7_3:74536385-74536404 Msa1123580:intron 30.0%
ATAACCAATTGCTTTAGTCT+CGG + chr7_3:74536535-74536554 Msa1123580:intron 30.0%
GAAAGACATTTACTATCTCT+TGG + chr7_3:74536624-74536643 Msa1123580:CDS 30.0%
!! TTGTTGCGTTAGGGTTTTAA+TGG - chr7_3:74533127-74533146 None:intergenic 35.0%
!!! TTATCGGTTTTGTTGCGTTA+GGG - chr7_3:74533136-74533155 None:intergenic 35.0%
TCTTCTTCTTCTTCTCAAAC+TGG - chr7_3:74533188-74533207 None:intergenic 35.0%
ATCTGAACGTACTTTGTAAC+GGG - chr7_3:74533296-74533315 None:intergenic 35.0%
! ATCACTATCTTTTGGTCATC+TGG + chr7_3:74533910-74533929 Msa1123580:intron 35.0%
! TTACAGAGTTGATCAATGTC+GGG + chr7_3:74534316-74534335 Msa1123580:intron 35.0%
! GATATCTTTTCGAAGTGATC+AGG - chr7_3:74534374-74534393 None:intergenic 35.0%
TTGATGCTGAGTTATGTTAG+TGG + chr7_3:74534657-74534676 Msa1123580:CDS 35.0%
AAGGAAAGGATAGATCTGAT+CGG + chr7_3:74534685-74534704 Msa1123580:CDS 35.0%
CCAGAGAAATTTAAACCATG+GGG - chr7_3:74534721-74534740 None:intergenic 35.0%
CCCAGAGAAATTTAAACCAT+GGG - chr7_3:74534722-74534741 None:intergenic 35.0%
CCCATGGTTTAAATTTCTCT+GGG + chr7_3:74534719-74534738 Msa1123580:CDS 35.0%
TCCCAGAGAAATTTAAACCA+TGG - chr7_3:74534723-74534742 None:intergenic 35.0%
! AATTTCTCTGGGAAACTTAC+AGG + chr7_3:74534730-74534749 Msa1123580:CDS 35.0%
ATTGCGGAACAATTCGAAAT+TGG + chr7_3:74534767-74534786 Msa1123580:CDS 35.0%
GGCCCAAAATTCTTCAATTT+CGG + chr7_3:74534869-74534888 Msa1123580:intron 35.0%
! GGCCGAAATTGAAGAATTTT+GGG - chr7_3:74534874-74534893 None:intergenic 35.0%
! AGGCCGAAATTGAAGAATTT+TGG - chr7_3:74534875-74534894 None:intergenic 35.0%
! GTGTTACTGAATGGCAATTA+TGG - chr7_3:74534970-74534989 None:intergenic 35.0%
TAATTGCCATTCAGTAACAC+TGG + chr7_3:74534970-74534989 Msa1123580:intron 35.0%
!! ACTGTTTTACCTTTGTTGTC+TGG + chr7_3:74535063-74535082 Msa1123580:intron 35.0%
!! CTGTTTTACCTTTGTTGTCT+GGG + chr7_3:74535064-74535083 Msa1123580:intron 35.0%
AAAATCTCACACTGCAATGA+TGG - chr7_3:74535121-74535140 None:intergenic 35.0%
CAGTGTTAGACATTTAGAAG+TGG + chr7_3:74535176-74535195 Msa1123580:intron 35.0%
GCTTATACTGCTTACAAAAC+TGG - chr7_3:74535387-74535406 None:intergenic 35.0%
AGATACAATTGCAAGCTTTC+AGG - chr7_3:74535508-74535527 None:intergenic 35.0%
GGTGTTTGTTTCATTGATGT+TGG + chr7_3:74535616-74535635 Msa1123580:intron 35.0%
TAGTAAACAGTCATCAAGGA+TGG - chr7_3:74535731-74535750 None:intergenic 35.0%
GACATAGTAAACAGTCATCA+AGG - chr7_3:74535735-74535754 None:intergenic 35.0%
AAAAGAGCGAAATTTGAGGA+TGG + chr7_3:74535961-74535980 Msa1123580:CDS 35.0%
AAGCATTCCAAACATAACGT+GGG - chr7_3:74536562-74536581 None:intergenic 35.0%
GGAAAATGAATTTCTACCCT+CGG + chr7_3:74536645-74536664 Msa1123580:CDS 35.0%
CTGAGAAGCTTGAATTACAT+AGG + chr7_3:74537485-74537504 Msa1123580:intron 35.0%
!!! CTTATCGGTTTTGTTGCGTT+AGG - chr7_3:74533137-74533156 None:intergenic 40.0%
!! CTTTTGCTTTGTTGCGAACA+GGG - chr7_3:74533230-74533249 None:intergenic 40.0%
TGGTTGTCGATGAAAAACAG+CGG - chr7_3:74533269-74533288 None:intergenic 40.0%
CATTCTCGATTATGCGATTC+CGG + chr7_3:74533347-74533366 Msa1123580:intron 40.0%
TCTTCTCCGATGAAGTTATC+CGG - chr7_3:74533405-74533424 None:intergenic 40.0%
CAAATTGAATCGCGCAATCT+CGG - chr7_3:74533449-74533468 None:intergenic 40.0%
AATGCTCTCAAAAGAGCAGA+AGG + chr7_3:74534192-74534211 Msa1123580:CDS 40.0%
! CTTTGTGTTGACATGAGGAA+AGG + chr7_3:74534441-74534460 Msa1123580:CDS 40.0%
GCAAGTGAATGTTAGTTCAC+TGG + chr7_3:74534509-74534528 Msa1123580:CDS 40.0%
AGTGAATGTTAGTTCACTGG+AGG + chr7_3:74534512-74534531 Msa1123580:CDS 40.0%
! ATGACTTGGAGGCTGATAAA+AGG + chr7_3:74534625-74534644 Msa1123580:CDS 40.0%
AGTTATGTTAGTGGCGAGAA+AGG + chr7_3:74534666-74534685 Msa1123580:CDS 40.0%
AGGAAAGGATAGATCTGATC+GGG + chr7_3:74534686-74534705 Msa1123580:CDS 40.0%
CCCCATGGTTTAAATTTCTC+TGG + chr7_3:74534718-74534737 Msa1123580:CDS 40.0%
!! GTTGCTTGCAGTGTTGTTTA+TGG + chr7_3:74534842-74534861 Msa1123580:intron 40.0%
!! GAGCATTGACCACATCAATA+TGG - chr7_3:74534933-74534952 None:intergenic 40.0%
GAATGGCAATTATGGCAGTA+TGG - chr7_3:74534962-74534981 None:intergenic 40.0%
! ACCTTTGTTGTCTGGGAATA+TGG + chr7_3:74535071-74535090 Msa1123580:intron 40.0%
ACCATATTCCCAGACAACAA+AGG - chr7_3:74535075-74535094 None:intergenic 40.0%
TTGTCTGGGAATATGGTCTT+GGG + chr7_3:74535078-74535097 Msa1123580:intron 40.0%
GTTAGACATTTAGAAGTGGC+AGG + chr7_3:74535180-74535199 Msa1123580:intron 40.0%
ACAAAACTGGAAAGCTCGAT+GGG - chr7_3:74535374-74535393 None:intergenic 40.0%
TACAAAACTGGAAAGCTCGA+TGG - chr7_3:74535375-74535394 None:intergenic 40.0%
CCTGCATGCAACAAAAAATC+AGG - chr7_3:74535646-74535665 None:intergenic 40.0%
!!! CCTGATTTTTTGTTGCATGC+AGG + chr7_3:74535643-74535662 Msa1123580:intron 40.0%
! ACAGTCATCAAGGATGGTTT+TGG - chr7_3:74535725-74535744 None:intergenic 40.0%
TTGAGGATGGCTAATCTCAT+AGG + chr7_3:74535974-74535993 Msa1123580:CDS 40.0%
AATACCACTTCTCTGCTATC+AGG - chr7_3:74536019-74536038 None:intergenic 40.0%
TATTTCCTGAACCTTTGGTG+TGG + chr7_3:74536390-74536409 Msa1123580:intron 40.0%
CAAGCATTCCAAACATAACG+TGG - chr7_3:74536563-74536582 None:intergenic 40.0%
! GTTATGTTTGGAATGCTTGC+AGG + chr7_3:74536564-74536583 Msa1123580:intron 40.0%
! ACTTTTAGTGCAAGATCCGA+GGG - chr7_3:74536664-74536683 None:intergenic 40.0%
! TACTTTTAGTGCAAGATCCG+AGG - chr7_3:74536665-74536684 None:intergenic 40.0%
TACTGAGAAAATTGCACCTC+TGG - chr7_3:74536748-74536767 None:intergenic 40.0%
!!! TAGCCAACTTTTCAAGTGCT+GGG - chr7_3:74536774-74536793 None:intergenic 40.0%
TTGAAAAGTTGGCTACCTTG+AGG + chr7_3:74536779-74536798 Msa1123580:CDS 40.0%
!! GCTTTTGCTTTGTTGCGAAC+AGG - chr7_3:74533231-74533250 None:intergenic 45.0%
GTTCGCAACAAAGCAAAAGC+TGG + chr7_3:74533231-74533250 Msa1123580:five_prime_UTR 45.0%
GCAACAAAGCAAAAGCTGGA+CGG + chr7_3:74533235-74533254 Msa1123580:five_prime_UTR 45.0%
!! CGTACTTTGTAACGGGTTTG+TGG - chr7_3:74533289-74533308 None:intergenic 45.0%
!!! GCTCTTTTGAGAGCATTCTC+AGG - chr7_3:74534189-74534208 None:intergenic 45.0%
CTTCGAAAAGATATCGCGCA+TGG + chr7_3:74534379-74534398 Msa1123580:CDS 45.0%
! TCGAGCTTTGTGTTGACATG+AGG + chr7_3:74534436-74534455 Msa1123580:CDS 45.0%
GAATGTTAGTTCACTGGAGG+AGG + chr7_3:74534515-74534534 Msa1123580:CDS 45.0%
CTCCAAGTCATCCACATCAA+GGG - chr7_3:74534616-74534635 None:intergenic 45.0%
TAACTCAGCATCAAGTCCTC+TGG - chr7_3:74534651-74534670 None:intergenic 45.0%
TGTTAGTGGCGAGAAAGGAA+AGG + chr7_3:74534671-74534690 Msa1123580:CDS 45.0%
GGACAGTGCTTGAGATATTG+CGG + chr7_3:74534751-74534770 Msa1123580:CDS 45.0%
!! GCTTGCAGTGTTGTTTATGG+CGG + chr7_3:74534845-74534864 Msa1123580:intron 45.0%
CTTCAATTTCGGCCTCCTTA+TGG + chr7_3:74534880-74534899 Msa1123580:intron 45.0%
GCAATTATGGCAGTATGGTG+TGG - chr7_3:74534957-74534976 None:intergenic 45.0%
! GAGCAACCAGTGTTACTGAA+TGG - chr7_3:74534979-74534998 None:intergenic 45.0%
GTTGTCTGGGAATATGGTCT+TGG + chr7_3:74535077-74535096 Msa1123580:intron 45.0%
TTGCCACTGAACTTGAACTC+TGG + chr7_3:74535554-74535573 Msa1123580:CDS 45.0%
! ACTACTGGGAGTGCAAATGA+GGG - chr7_3:74536049-74536068 None:intergenic 45.0%
! TACTACTGGGAGTGCAAATG+AGG - chr7_3:74536050-74536069 None:intergenic 45.0%
ACCAGTTCAGCAAGAAGTGA+CGG - chr7_3:74536143-74536162 None:intergenic 45.0%
!! CATTTCATGGGTTGGTTGTG+TGG + chr7_3:74536329-74536348 Msa1123580:intron 45.0%
TTCAGGGGTTGGATAACATC+TGG + chr7_3:74536489-74536508 Msa1123580:intron 45.0%
TCAGGGGTTGGATAACATCT+GGG + chr7_3:74536490-74536509 Msa1123580:intron 45.0%
GAATGCTTGCAGGCTTCAAA+GGG + chr7_3:74536574-74536593 Msa1123580:intron 45.0%
TGTCCCAGCACTTGAAAAGT+TGG + chr7_3:74536768-74536787 Msa1123580:CDS 45.0%
!!! GTAGCCAACTTTTCAAGTGC+TGG - chr7_3:74536775-74536794 None:intergenic 45.0%
TACCTTGAGGTTGCTACAAC+AGG + chr7_3:74536792-74536811 Msa1123580:CDS 45.0%
!! AAAAGTGTCCGCTTACACTC+AGG + chr7_3:74537550-74537569 Msa1123580:intron 45.0%
TCGATGAACCTGAGTGTAAG+CGG - chr7_3:74537561-74537580 None:intergenic 45.0%
!! CAAAAATAAAAAATTTATAT+AGG - chr7_3:74536208-74536227 None:intergenic 5.0%
!!! TATTTTAAATTTTAAAAATC+TGG + chr7_3:74537352-74537371 Msa1123580:intron 5.0%
AAAGCTCAGCGGCTGCTTAT+CGG - chr7_3:74533152-74533171 None:intergenic 50.0%
! GTGTTGACATGAGGAAAGGC+CGG + chr7_3:74534445-74534464 Msa1123580:CDS 50.0%
!! AAAGGCCGGTTTGCTAAGGA+TGG + chr7_3:74534459-74534478 Msa1123580:CDS 50.0%
TGAGGCCATCCTTAGCAAAC+CGG - chr7_3:74534467-74534486 None:intergenic 50.0%
AGCTGAACAAGCACGTAGTC+AGG + chr7_3:74534572-74534591 Msa1123580:CDS 50.0%
CACATCAAGGGCTTCTTCCA+AGG - chr7_3:74534604-74534623 None:intergenic 50.0%
CTTGGAAGAAGCCCTTGATG+TGG + chr7_3:74534602-74534621 Msa1123580:CDS 50.0%
AGCCCTTGATGTGGATGACT+TGG + chr7_3:74534611-74534630 Msa1123580:CDS 50.0%
CCTCCAAGTCATCCACATCA+AGG - chr7_3:74534617-74534636 None:intergenic 50.0%
! CCTTGATGTGGATGACTTGG+AGG + chr7_3:74534614-74534633 Msa1123580:CDS 50.0%
!! TGCAGTGTTGTTTATGGCGG+AGG + chr7_3:74534848-74534867 Msa1123580:intron 50.0%
!! GATGGGCTGTCATCTGCATA+TGG - chr7_3:74535357-74535376 None:intergenic 50.0%
CTTTCAGGAGCAGAAAGGTC+AGG - chr7_3:74535493-74535512 None:intergenic 50.0%
GCAAGCTTTCAGGAGCAGAA+AGG - chr7_3:74535498-74535517 None:intergenic 50.0%
! CTGCCAGAGTTCAAGTTCAG+TGG - chr7_3:74535560-74535579 None:intergenic 50.0%
CACTGAACTTGAACTCTGGC+AGG + chr7_3:74535558-74535577 Msa1123580:CDS 50.0%
GAACTTGAACTCTGGCAGGT+TGG + chr7_3:74535562-74535581 Msa1123580:intron 50.0%
CACTTCTCTGCTATCAGGCT+TGG - chr7_3:74536014-74536033 None:intergenic 50.0%
CAAGCCTGATAGCAGAGAAG+TGG + chr7_3:74536012-74536031 Msa1123580:CDS 50.0%
TTGTCTTTCCCCAGCTCTCA+AGG + chr7_3:74536117-74536136 Msa1123580:intron 50.0%
! TCCTGAACCTTTGGTGTGGT+TGG + chr7_3:74536394-74536413 Msa1123580:intron 50.0%
! CCTGAACCTTTGGTGTGGTT+GGG + chr7_3:74536395-74536414 Msa1123580:intron 50.0%
GGGACCGAGACTAAAGCAAT+TGG - chr7_3:74536542-74536561 None:intergenic 50.0%
TCTCGGTCCCACGTTATGTT+TGG + chr7_3:74536552-74536571 Msa1123580:intron 50.0%
GGAATGCTTGCAGGCTTCAA+AGG + chr7_3:74536573-74536592 Msa1123580:intron 50.0%
!! CTCTGGAACAGATGAAGCGA+AGG - chr7_3:74536731-74536750 None:intergenic 50.0%
CTTCGCTTCATCTGTTCCAG+AGG + chr7_3:74536729-74536748 Msa1123580:CDS 50.0%
CACCTGTTGTAGCAACCTCA+AGG - chr7_3:74536797-74536816 None:intergenic 50.0%
GCAAGTGCGCAAAAGCTCAG+CGG - chr7_3:74533163-74533182 None:intergenic 55.0%
CGTTTCCCGGCCGTTGTAAA+AGG + chr7_3:74533372-74533391 Msa1123580:intron 55.0%
TTCCCGGCCGTTGTAAAAGG+CGG + chr7_3:74533375-74533394 Msa1123580:intron 55.0%
GGTGCGCCGGATAACTTCAT+CGG + chr7_3:74533396-74533415 Msa1123580:intron 55.0%
GCAATCTCGGAATTGCGTCG+CGG - chr7_3:74533436-74533455 None:intergenic 55.0%
GATCAATGTCGGGCAGAAGC+AGG + chr7_3:74534326-74534345 Msa1123580:CDS 55.0%
TCGCGCATGGCAGAAAACAC+TGG + chr7_3:74534392-74534411 Msa1123580:CDS 55.0%
!! GAGGAAAGGCCGGTTTGCTA+AGG + chr7_3:74534455-74534474 Msa1123580:CDS 55.0%
ACAAGCACGTAGTCAGGCTC+AGG + chr7_3:74534578-74534597 Msa1123580:CDS 55.0%
GGAGGCTGATAAAAGGCCAG+AGG + chr7_3:74534632-74534651 Msa1123580:CDS 55.0%
!! ATCGGGAGCTTGTTACCCCA+TGG + chr7_3:74534703-74534722 Msa1123580:CDS 55.0%
ATTTCGGCCTCCTTATGGCG+CGG + chr7_3:74534885-74534904 Msa1123580:intron 55.0%
AAAGGTCAGGTCGGTCTCGT+TGG - chr7_3:74535480-74535499 None:intergenic 55.0%
CAGGAGCAGAAAGGTCAGGT+CGG - chr7_3:74535489-74535508 None:intergenic 55.0%
CCTCCTCATGATCGCACTCA+CGG + chr7_3:74535911-74535930 Msa1123580:CDS 55.0%
AAGTGACGGCCTTGAGAGCT+GGG - chr7_3:74536129-74536148 None:intergenic 55.0%
GCCGTCACTTCTTGCTGAAC+TGG + chr7_3:74536139-74536158 Msa1123580:CDS 55.0%
CCCAACCACACCAAAGGTTC+AGG - chr7_3:74536398-74536417 None:intergenic 55.0%
TGTGTGCCCAACCACACCAA+AGG - chr7_3:74536404-74536423 None:intergenic 55.0%
GCTCTGTAAGGTTCAGGGGT+TGG + chr7_3:74536478-74536497 Msa1123580:intron 55.0%
TGCGATTCCGGTGCGTTTCC+CGG + chr7_3:74533359-74533378 Msa1123580:intron 60.0%
! CACCGCCTTTTACAACGGCC+GGG - chr7_3:74533380-74533399 None:intergenic 60.0%
! GCACCGCCTTTTACAACGGC+CGG - chr7_3:74533381-74533400 None:intergenic 60.0%
! CGGCGCACCGCCTTTTACAA+CGG - chr7_3:74533385-74533404 None:intergenic 60.0%
CGTTGTAAAAGGCGGTGCGC+CGG + chr7_3:74533383-74533402 Msa1123580:intron 60.0%
ACGTAGTCAGGCTCAGGCCT+TGG + chr7_3:74534584-74534603 Msa1123580:CDS 60.0%
GCCTCCTTATGGCGCGGTTA+CGG + chr7_3:74534891-74534910 Msa1123580:intron 60.0%
TCCTTATGGCGCGGTTACGG+CGG + chr7_3:74534894-74534913 Msa1123580:intron 60.0%
CCGTGAGTGCGATCATGAGG+AGG - chr7_3:74535914-74535933 None:intergenic 60.0%
GCACCGTGAGTGCGATCATG+AGG - chr7_3:74535917-74535936 None:intergenic 60.0%
AGTGACGGCCTTGAGAGCTG+GGG - chr7_3:74536128-74536147 None:intergenic 60.0%
GAAGTGACGGCCTTGAGAGC+TGG - chr7_3:74536130-74536149 None:intergenic 60.0%
CGCGCGCTCTGTAAGGTTCA+GGG + chr7_3:74536473-74536492 Msa1123580:intron 60.0%
GCGCGCTCTGTAAGGTTCAG+GGG + chr7_3:74536474-74536493 Msa1123580:intron 60.0%
ACAACGGCCGGGAAACGCAC+CGG - chr7_3:74533369-74533388 None:intergenic 65.0%
CTCGGAATTGCGTCGCGGAG+TGG - chr7_3:74533431-74533450 None:intergenic 65.0%
GCCGTAACCGCGCCATAAGG+AGG - chr7_3:74534895-74534914 None:intergenic 65.0%
CCTTATGGCGCGGTTACGGC+GGG + chr7_3:74534895-74534914 Msa1123580:intron 65.0%
GCGCGCGCTCTGTAAGGTTC+AGG + chr7_3:74536472-74536491 Msa1123580:intron 65.0%
CCCGCCGTAACCGCGCCATA+AGG - chr7_3:74534898-74534917 None:intergenic 70.0%
GTGTGCGCGCGCGCTCTGTA+AGG + chr7_3:74536466-74536485 Msa1123580:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 74533092 74537610 74533092 ID=Msa1123580;Name=Msa1123580
chr7_3 mRNA 74533092 74537610 74533092 ID=Msa1123580-mRNA-1;Parent=Msa1123580;Name=Msa1123580-mRNA-1;_AED=0.03;_eAED=0.03;_QI=238|0.85|0.75|0.87|0.85|0.75|8|0|469
chr7_3 exon 74533092 74533303 74533092 ID=Msa1123580-mRNA-1:exon:19810;Parent=Msa1123580-mRNA-1
chr7_3 exon 74534142 74534213 74534142 ID=Msa1123580-mRNA-1:exon:19811;Parent=Msa1123580-mRNA-1
chr7_3 exon 74534322 74534803 74534322 ID=Msa1123580-mRNA-1:exon:19812;Parent=Msa1123580-mRNA-1
chr7_3 exon 74535364 74535579 74535364 ID=Msa1123580-mRNA-1:exon:19813;Parent=Msa1123580-mRNA-1
chr7_3 exon 74535665 74536033 74535665 ID=Msa1123580-mRNA-1:exon:19814;Parent=Msa1123580-mRNA-1
chr7_3 exon 74536131 74536160 74536131 ID=Msa1123580-mRNA-1:exon:19815;Parent=Msa1123580-mRNA-1
chr7_3 exon 74536586 74536813 74536586 ID=Msa1123580-mRNA-1:exon:19816;Parent=Msa1123580-mRNA-1
chr7_3 exon 74537572 74537610 74537572 ID=Msa1123580-mRNA-1:exon:19817;Parent=Msa1123580-mRNA-1
chr7_3 five_prime_UTR 74533092 74533303 74533092 ID=Msa1123580-mRNA-1:five_prime_utr;Parent=Msa1123580-mRNA-1
chr7_3 five_prime_UTR 74534142 74534167 74534142 ID=Msa1123580-mRNA-1:five_prime_utr;Parent=Msa1123580-mRNA-1
chr7_3 CDS 74534168 74534213 74534168 ID=Msa1123580-mRNA-1:cds;Parent=Msa1123580-mRNA-1
chr7_3 CDS 74534322 74534803 74534322 ID=Msa1123580-mRNA-1:cds;Parent=Msa1123580-mRNA-1
chr7_3 CDS 74535364 74535579 74535364 ID=Msa1123580-mRNA-1:cds;Parent=Msa1123580-mRNA-1
chr7_3 CDS 74535665 74536033 74535665 ID=Msa1123580-mRNA-1:cds;Parent=Msa1123580-mRNA-1
chr7_3 CDS 74536131 74536160 74536131 ID=Msa1123580-mRNA-1:cds;Parent=Msa1123580-mRNA-1
chr7_3 CDS 74536586 74536813 74536586 ID=Msa1123580-mRNA-1:cds;Parent=Msa1123580-mRNA-1
chr7_3 CDS 74537572 74537610 74537572 ID=Msa1123580-mRNA-1:cds;Parent=Msa1123580-mRNA-1
Gene Sequence

>Msa1123580

ATGACGTCATTTTTGAAGCCTGAGAATGCTCTCAAAAGAGCAGAAGAGTTGATCAATGTCGGGCAGAAGCAGGATGCTCTTCAGACTCTGCACGACCTGATCACTTCGAAAAGATATCGCGCATGGCAGAAAACACTGGAGAGAATTATGTTTAAGTATGTCGAGCTTTGTGTTGACATGAGGAAAGGCCGGTTTGCTAAGGATGGCCTCATTCAGTATCGTATAATATGTCAGCAAGTGAATGTTAGTTCACTGGAGGAGGTGATCAAGCACTTCATGCATCTGTCAACAGAGAAAGCTGAACAAGCACGTAGTCAGGCTCAGGCCTTGGAAGAAGCCCTTGATGTGGATGACTTGGAGGCTGATAAAAGGCCAGAGGACTTGATGCTGAGTTATGTTAGTGGCGAGAAAGGAAAGGATAGATCTGATCGGGAGCTTGTTACCCCATGGTTTAAATTTCTCTGGGAAACTTACAGGACAGTGCTTGAGATATTGCGGAACAATTCGAAATTGGAAGCCTTATATGCTATGACAGCCCATCGAGCTTTCCAGTTTTGTAAGCAGTATAAGCGAACAACAGAATTTCGCAGACTCTGTGAAATTATCAGAAATCATTTGGCTAATCTTAACAAATATCGGGACCAACGAGACCGACCTGACCTTTCTGCTCCTGAAAGCTTGCAATTGTATCTTGATACACGATTTGAGCAGCTGAAAATTGCCACTGAACTTGAACTCTGGCAGGAAGCCTTCAGATCTGTTGAAGATATTCATGGATTAATGTGCATGGTCAAGAAAACACCAAAACCATCCTTGATGACTGTTTACTATGTCAAGTTGACAGAAATATTTTGGAAATCTTCAAGTCATTTATATCATGCTTATGCATGGTTTAAGCTCTTTTTGTTACAGAAAAGCTTCAACAAAAATCTTAGTCAAAAGGATTTACAATTAATAGCTTCATCTGTTGTTCTAGCTGCACTCTCAGTGCCTCCTCATGATCGCACTCACGGTGCATCTCATTTAGAACTAGAGCATGAAAAAGAGCGAAATTTGAGGATGGCTAATCTCATAGGCTTTAATCTTGAAACCAAGCCTGATAGCAGAGAAGTGCTCTCAAGGCCGTCACTTCTTGCTGAACTGGCTTCAAAGGGTGTAATGTCTTGTGTTTCACAAGAAGTGAAAGACATTTACTATCTCTTGGAAAATGAATTTCTACCCTCGGATCTTGCACTAAAAGTACTACCCCTTCTAAATAAAATTTCGAAATTAGGGGGTAAGTTTACCTTCGCTTCATCTGTTCCAGAGGTGCAATTTTCTCAGTATGTCCCAGCACTTGAAAAGTTGGCTACCTTGAGGTTGCTACAACAGGTTCATCGAGCTCGAAAGCGCTTTATGCTTGCTGCTTGA

Protein sequence

>Msa1123580

MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKIATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMTVYYVKLTEIFWKSSSHLYHAYAWFKLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHEKERNLRMANLIGFNLETKPDSREVLSRPSLLAELASKGVMSCVSQEVKDIYYLLENEFLPSDLALKVLPLLNKISKLGGKFTFASSVPEVQFSQYVPALEKLATLRLLQQVHRARKRFMLAA*