AlfalfaGEDB | Msa1439750

M. sativa cultivar zhongmu-4 / Msa1439750

KEGG: K03253
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0032991 GO:0044424 GO:0044444 GO:0044464
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1439750	XP_003603240.2	97.633	169	3	1	1	169	1	168	6.49e-109	336

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1439750	sp\|P56821\|EIF3B_TOBAC	76.923	169	39	0	1	169	1	169	5.23e-88	275

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1439750	G7J950	97.633	169	3	1	1	169	1	168	3.10e-109	336

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0035320	Msa1439750	0.825976	3.494521e-54	-8.615850e-47
Msa0763840	Msa1439750	0.821048	4.967645e-53	-8.615850e-47
Msa1123580	Msa1439750	0.849120	3.965149e-60	-8.615850e-47
Msa1336030	Msa1439750	0.810597	1.065240e-50	-8.615850e-47
Msa1401510	Msa1439750	0.801947	7.080729e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1439750	MtrunA17_Chr3g0136501	97.633	169	3	1	1	169	1	168	5.97e-113	336

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1439750	AT5G27640.3	65.455	165	57	0	5	169	1	165	3.97e-73	233
Msa1439750	AT5G27640.1	65.455	165	57	0	5	169	1	165	3.97e-73	233
Msa1439750	AT5G25780.1	67.974	153	49	0	17	169	14	166	4.96e-70	224
Msa1439750	AT5G27640.2	56.545	191	57	1	5	169	1	191	1.60e-67	218

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Find 66 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGGAATATGCTCCAG+GGG	0.658157	tig0028837:+52461	Msa1439750:CDS
AAATGGATATGTCTGTGGAT+TGG	0.503467	tig0028837:-51496	None:intergenic
AAGCTTCTCGAATTTCTCCT+TGG	0.445814	tig0028837:-52103	None:intergenic
AATCCACAGACATATCCATT+TGG	0.506225	tig0028837:+51498	Msa1439750:five_prime_UTR
AATGGAATCGAGATCGATAG+AGG	0.542175	tig0028837:-51870	None:intergenic
AATGGATATGTCTGTGGATT+GGG	0.412928	tig0028837:-51495	None:intergenic
AATTTCTCCTTGGGAACAAC+AGG	0.441899	tig0028837:-52093	None:intergenic
ACATACTCACAGAAAATATA+TGG	0.231895	tig0028837:-52386	None:intergenic
ACTAAACCTGGCTGTGCCGT+CGG	0.578062	tig0028837:+51608	Msa1439750:five_prime_UTR
ACTCACCACCGCAATCATGG+CGG	0.744529	tig0028837:+51790	Msa1439750:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGATGAGGTTAAATTGCAA+TGG	+	tig0028837:52304-52323	Msa1439750:intron	30.0%
TTGATGAGGTTAAATTGCAA+TGG	+	tig0028837:52304-52323	Msa1439750:intron	30.0%
AATGGATATGTCTGTGGATT+GGG	-	tig0028837:51498-51517	None:intergenic	35.0%
AAATGGATATGTCTGTGGAT+TGG	-	tig0028837:51499-51518	None:intergenic	35.0%
AATCCACAGACATATCCATT+TGG	+	tig0028837:51498-51517	Msa1439750:five_prime_UTR	35.0%
GATGAAGAGAAGAGAATCTA+GGG	-	tig0028837:51648-51667	None:intergenic	35.0%
AGATGAAGAGAAGAGAATCT+AGG	-	tig0028837:51649-51668	None:intergenic	35.0%
TGACGATGATGTTATTCAAG+AGG	+	tig0028837:52017-52036	Msa1439750:CDS	35.0%
TGTTATTCAAGAGGAGAATC+TGG	+	tig0028837:52026-52045	Msa1439750:CDS	35.0%
ATTTAACCTCATCAAACCGA+TGG	-	tig0028837:52299-52318	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0028837	gene	51490	52482	51490	ID=Msa1439750;Name=Msa1439750
tig0028837	mRNA	51490	52482	51490	ID=Msa1439750-mRNA-1;Parent=Msa1439750;Name=Msa1439750-mRNA-1;_AED=0.00;_eAED=0.00;_QI=209\|1\|1\|1\|0.66\|0.5\|4\|0\|169
tig0028837	exon	51490	51636	51490	ID=Msa1439750-mRNA-1:exon:11897;Parent=Msa1439750-mRNA-1
tig0028837	exon	51744	51927	51744	ID=Msa1439750-mRNA-1:exon:11898;Parent=Msa1439750-mRNA-1
tig0028837	exon	52014	52251	52014	ID=Msa1439750-mRNA-1:exon:11899;Parent=Msa1439750-mRNA-1
tig0028837	exon	52336	52482	52336	ID=Msa1439750-mRNA-1:exon:11900;Parent=Msa1439750-mRNA-1
tig0028837	five_prime_UTR	51490	51636	51490	ID=Msa1439750-mRNA-1:five_prime_utr;Parent=Msa1439750-mRNA-1
tig0028837	five_prime_UTR	51744	51805	51744	ID=Msa1439750-mRNA-1:five_prime_utr;Parent=Msa1439750-mRNA-1
tig0028837	CDS	51806	51927	51806	ID=Msa1439750-mRNA-1:cds;Parent=Msa1439750-mRNA-1
tig0028837	CDS	52014	52251	52014	ID=Msa1439750-mRNA-1:cds;Parent=Msa1439750-mRNA-1
tig0028837	CDS	52336	52482	52336	ID=Msa1439750-mRNA-1:cds;Parent=Msa1439750-mRNA-1

Gene Sequence

>Msa1439750

ATGGCGGATGTAATGCTAATGAAAGAAATTGAAGACAAAGCTTTGCTTCTCGGAATTGATCTATCCTCTATCGATCTCGATTCCATTCACCTTCCTCCAGGTGACAACTGCGGAATCCTCAGTGATGACGATGATGTTATTCAAGAGGAGAATCTGGAGTTTGATTCTGGATTTGGCAATATTATTGTAGTGGATAATCTACCTGTTGTTCCCAAGGAGAAATTCGAGAAGCTTGTAACAGTTGTTAGAAAAATTTATAGTCAGATTGGTGCTATTAAAGAGGATGGTCTCTGGATGCCTGTTGATCCTTCTACTGAAAAGTCCTTGGGTTACTGCTTCATTGAGTACAATACTCCTCAGGAAGCTGAGCTTGCTAAAGAGAAGACTCAAGGATACAAACTGGATCGTTCCCATATATTTTCTGTGAGTATGTTTGATGATTTCGATCGCTTCATGAAAGTGCCAGACGAGTGGGCTCCTCCTCCAAACAAGGAATATGCTCCAGGG

Protein sequence

>Msa1439750

MADVMLMKEIEDKALLLGIDLSSIDLDSIHLPPGDNCGILSDDDDVIQEENLEFDSGFGNIIVVDNLPVVPKEKFEKLVTVVRKIYSQIGAIKEDGLWMPVDPSTEKSLGYCFIEYNTPQEAELAKEKTQGYKLDRSHIFSVSMFDDFDRFMKVPDEWAPPPNKEYAPG