Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439750 | XP_003603240.2 | 97.633 | 169 | 3 | 1 | 1 | 169 | 1 | 168 | 6.49e-109 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439750 | sp|P56821|EIF3B_TOBAC | 76.923 | 169 | 39 | 0 | 1 | 169 | 1 | 169 | 5.23e-88 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439750 | G7J950 | 97.633 | 169 | 3 | 1 | 1 | 169 | 1 | 168 | 3.10e-109 | 336 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035320 | Msa1439750 | 0.825976 | 3.494521e-54 | -8.615850e-47 |
| Msa1401510 | Msa1439750 | 0.801947 | 7.080729e-49 | -8.615850e-47 |
| Msa0763840 | Msa1439750 | 0.821048 | 4.967645e-53 | -8.615850e-47 |
| Msa1336030 | Msa1439750 | 0.810597 | 1.065240e-50 | -8.615850e-47 |
| Msa1123580 | Msa1439750 | 0.849120 | 3.965149e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439750 | MtrunA17_Chr3g0136501 | 97.633 | 169 | 3 | 1 | 1 | 169 | 1 | 168 | 5.97e-113 | 336 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439750 | AT5G27640.3 | 65.455 | 165 | 57 | 0 | 5 | 169 | 1 | 165 | 3.97e-73 | 233 |
| Msa1439750 | AT5G27640.1 | 65.455 | 165 | 57 | 0 | 5 | 169 | 1 | 165 | 3.97e-73 | 233 |
| Msa1439750 | AT5G25780.1 | 67.974 | 153 | 49 | 0 | 17 | 169 | 14 | 166 | 4.96e-70 | 224 |
| Msa1439750 | AT5G27640.2 | 56.545 | 191 | 57 | 1 | 5 | 169 | 1 | 191 | 1.60e-67 | 218 |
Find 66 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGAGTTTGATTCTGGATT+TGG | 0.226852 | tig0028837:+52045 | Msa1439750:CDS |
| ACATACTCACAGAAAATATA+TGG | 0.231895 | tig0028837:-52386 | None:intergenic |
| GAGAATCTGGAGTTTGATTC+TGG | 0.241775 | tig0028837:+52039 | Msa1439750:CDS |
| GAAGACAAAGCTTTGCTTCT+CGG | 0.279856 | tig0028837:+51836 | Msa1439750:CDS |
| CCTGGAGCATATTCCTTGTT+TGG | 0.282373 | tig0028837:-52459 | None:intergenic |
| ATTGCGGTGGTGAGTGATTA+TGG | 0.348784 | tig0028837:-51782 | None:intergenic |
| GCGACAACGCTAAAGCTTTA+CGG | 0.354532 | tig0028837:+51757 | Msa1439750:five_prime_UTR |
| TCCTTCTACTGAAAAGTCCT+TGG | 0.402875 | tig0028837:+52197 | Msa1439750:CDS |
| AATGGATATGTCTGTGGATT+GGG | 0.412928 | tig0028837:-51495 | None:intergenic |
| TTAGCGTTGTCGCAGTGAAA+TGG | 0.428140 | tig0028837:-51747 | None:intergenic |
| TGTTATTCAAGAGGAGAATC+TGG | 0.430382 | tig0028837:+52026 | Msa1439750:CDS |
| GGAGGAGGAGCCCACTCGTC+TGG | 0.438943 | tig0028837:-52438 | None:intergenic |
| AATTTCTCCTTGGGAACAAC+AGG | 0.441899 | tig0028837:-52093 | None:intergenic |
| CTGGCTGTGCCGTCGGTAAA+CGG | 0.442377 | tig0028837:+51615 | Msa1439750:five_prime_UTR |
| ATATGTCTGTGGATTGGGCT+CGG | 0.444679 | tig0028837:-51490 | None:intergenic |
| AAGCTTCTCGAATTTCTCCT+TGG | 0.445814 | tig0028837:-52103 | None:intergenic |
| TAGTTGTTGACGGCGGCAAT+CGG | 0.449280 | tig0028837:-51589 | None:intergenic |
| CTATTAAAGAGGATGGTCTC+TGG | 0.450216 | tig0028837:+52163 | Msa1439750:CDS |
| GGAGCATATTCCTTGTTTGG+AGG | 0.451980 | tig0028837:-52456 | None:intergenic |
| AGCTTCTCGAATTTCTCCTT+GGG | 0.454211 | tig0028837:-52102 | None:intergenic |
| GAAGACTCAAGGATACAAAC+TGG | 0.456776 | tig0028837:+52356 | Msa1439750:CDS |
| CCTTCTACTGAAAAGTCCTT+GGG | 0.460856 | tig0028837:+52198 | Msa1439750:CDS |
| TTTGTTGATTTAGGGTTTGG+AGG | 0.461123 | tig0028837:-51526 | None:intergenic |
| CCAAACAAGGAATATGCTCC+AGG | 0.464666 | tig0028837:+52459 | Msa1439750:CDS |
| CAGCCAGGTTTAGTTGTTGA+CGG | 0.479174 | tig0028837:-51599 | None:intergenic |
| GGTTTGGAGGCTCTTCCAAA+TGG | 0.481121 | tig0028837:-51513 | None:intergenic |
| GCATATTCCTTGTTTGGAGG+AGG | 0.495988 | tig0028837:-52453 | None:intergenic |
| AGGATTCCGCAGTTGTCACC+TGG | 0.502357 | tig0028837:-51902 | None:intergenic |
| AAATGGATATGTCTGTGGAT+TGG | 0.503467 | tig0028837:-51496 | None:intergenic |
| AATCCACAGACATATCCATT+TGG | 0.506225 | tig0028837:+51498 | Msa1439750:five_prime_UTR |
| TATGTCTGTGGATTGGGCTC+GGG | 0.511737 | tig0028837:-51489 | None:intergenic |
| GATTCCATTCACCTTCCTCC+AGG | 0.514429 | tig0028837:+51884 | Msa1439750:CDS |
| CCGCCGTCAACAACTAAACC+TGG | 0.522577 | tig0028837:+51596 | Msa1439750:five_prime_UTR |
| CATACTCACAGAAAATATAT+GGG | 0.522843 | tig0028837:-52385 | None:intergenic |
| GTCACCTGGAGGAAGGTGAA+TGG | 0.523301 | tig0028837:-51888 | None:intergenic |
| GTGACAACTGCGGAATCCTC+AGG | 0.526265 | tig0028837:+51906 | Msa1439750:CDS |
| ATTTGGCAATATTATTGTAG+TGG | 0.528989 | tig0028837:+52062 | Msa1439750:CDS |
| ATCACTCACCACCGCAATCA+TGG | 0.534565 | tig0028837:+51787 | Msa1439750:exon |
| CGCAGTTGTCACCTGGAGGA+AGG | 0.540787 | tig0028837:-51895 | None:intergenic |
| AATGGAATCGAGATCGATAG+AGG | 0.542175 | tig0028837:-51870 | None:intergenic |
| CATTGAGTACAATACTCCTC+AGG | 0.551994 | tig0028837:+52230 | Msa1439750:CDS |
| TAATCTACCTGTTGTTCCCA+AGG | 0.563226 | tig0028837:+52086 | Msa1439750:CDS |
| TTCAGTGCAACGGAAGCGCA+AGG | 0.564465 | tig0028837:-51561 | None:intergenic |
| TCAGATTGGTGCTATTAAAG+AGG | 0.572204 | tig0028837:+52152 | Msa1439750:CDS |
| CGTTTACCGACGGCACAGCC+AGG | 0.574861 | tig0028837:-51614 | None:intergenic |
| ACTAAACCTGGCTGTGCCGT+CGG | 0.578062 | tig0028837:+51608 | Msa1439750:five_prime_UTR |
| CAGTGCAACGGAAGCGCAAG+GGG | 0.578270 | tig0028837:-51559 | None:intergenic |
| ATTGGTGCTATTAAAGAGGA+TGG | 0.581702 | tig0028837:+52156 | Msa1439750:CDS |
| CATGAAAGTGCCAGACGAGT+GGG | 0.584342 | tig0028837:+52428 | Msa1439750:CDS |
| GTGGGCTCCTCCTCCAAACA+AGG | 0.584356 | tig0028837:+52446 | Msa1439750:CDS |
| CATTACATCCGCCATGATTG+CGG | 0.586421 | tig0028837:-51798 | None:intergenic |
| TGACGATGATGTTATTCAAG+AGG | 0.592706 | tig0028837:+52017 | Msa1439750:CDS |
| ATCGGTAGAGTTCAGTGCAA+CGG | 0.593909 | tig0028837:-51571 | None:intergenic |
| CTTCCAAATGGATATGTCTG+TGG | 0.597999 | tig0028837:-51501 | None:intergenic |
| TCATGAAAGTGCCAGACGAG+TGG | 0.602382 | tig0028837:+52427 | Msa1439750:CDS |
| CTTGCTAAAGAGAAGACTCA+AGG | 0.612535 | tig0028837:+52345 | Msa1439750:CDS |
| CAAACAAGGAATATGCTCCA+GGG | 0.614249 | tig0028837:+52460 | Msa1439750:CDS |
| TCAGTGCAACGGAAGCGCAA+GGG | 0.616804 | tig0028837:-51560 | None:intergenic |
| CTCAATGAAGCAGTAACCCA+AGG | 0.644342 | tig0028837:-52214 | None:intergenic |
| TACATCCGCCATGATTGCGG+TGG | 0.656957 | tig0028837:-51795 | None:intergenic |
| AAACAAGGAATATGCTCCAG+GGG | 0.658157 | tig0028837:+52461 | Msa1439750:CDS |
| CTTCCTCCAGGTGACAACTG+CGG | 0.689197 | tig0028837:+51896 | Msa1439750:CDS |
| ATTCCGCAGTTGTCACCTGG+AGG | 0.690949 | tig0028837:-51899 | None:intergenic |
| GGATTCTTACCGTTTACCGA+CGG | 0.695877 | tig0028837:-51624 | None:intergenic |
| CCAGGTTTAGTTGTTGACGG+CGG | 0.714336 | tig0028837:-51596 | None:intergenic |
| ACTCACCACCGCAATCATGG+CGG | 0.744529 | tig0028837:+51790 | Msa1439750:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATAAAATCTGAAAGTA+TGG | - | tig0028837:51966-51985 | None:intergenic | 20.0% |
| !! | AGAAAAATTTATAGTCAGAT+TGG | + | tig0028837:52138-52157 | Msa1439750:CDS | 20.0% |
| !!! | GTAAATAGATACTCTTTTTT+AGG | + | tig0028837:52252-52271 | Msa1439750:intron | 20.0% |
| !! | AATCATAAAATCTGAAAGTA+TGG | - | tig0028837:51966-51985 | None:intergenic | 20.0% |
| !! | AGAAAAATTTATAGTCAGAT+TGG | + | tig0028837:52138-52157 | Msa1439750:CDS | 20.0% |
| !!! | GTAAATAGATACTCTTTTTT+AGG | + | tig0028837:52252-52271 | Msa1439750:intron | 20.0% |
| !!! | AACGATGTTTTGTTGATTTA+GGG | - | tig0028837:51537-51556 | None:intergenic | 25.0% |
| ! | AAGAGTAAATTAATGTGGAA+AGG | - | tig0028837:51702-51721 | None:intergenic | 25.0% |
| ! | GATAGAAGAGTAAATTAATG+TGG | - | tig0028837:51707-51726 | None:intergenic | 25.0% |
| ! | ATTTGGCAATATTATTGTAG+TGG | + | tig0028837:52062-52081 | Msa1439750:CDS | 25.0% |
| !!! | TTCAATGTTTGTTTTACCAT+CGG | + | tig0028837:52280-52299 | Msa1439750:intron | 25.0% |
| !!! | TAAATTGCAATGGCTATTTT+AGG | + | tig0028837:52314-52333 | Msa1439750:intron | 25.0% |
| ! | CATACTCACAGAAAATATAT+GGG | - | tig0028837:52388-52407 | None:intergenic | 25.0% |
| ! | ACATACTCACAGAAAATATA+TGG | - | tig0028837:52389-52408 | None:intergenic | 25.0% |
| !!! | AACGATGTTTTGTTGATTTA+GGG | - | tig0028837:51537-51556 | None:intergenic | 25.0% |
| ! | AAGAGTAAATTAATGTGGAA+AGG | - | tig0028837:51702-51721 | None:intergenic | 25.0% |
| ! | GATAGAAGAGTAAATTAATG+TGG | - | tig0028837:51707-51726 | None:intergenic | 25.0% |
| ! | ATTTGGCAATATTATTGTAG+TGG | + | tig0028837:52062-52081 | Msa1439750:CDS | 25.0% |
| !!! | TTCAATGTTTGTTTTACCAT+CGG | + | tig0028837:52280-52299 | Msa1439750:intron | 25.0% |
| !!! | TAAATTGCAATGGCTATTTT+AGG | + | tig0028837:52314-52333 | Msa1439750:intron | 25.0% |
| ! | CATACTCACAGAAAATATAT+GGG | - | tig0028837:52388-52407 | None:intergenic | 25.0% |
| ! | ACATACTCACAGAAAATATA+TGG | - | tig0028837:52389-52408 | None:intergenic | 25.0% |
| !!! | TGTTTTGTTGATTTAGGGTT+TGG | - | tig0028837:51532-51551 | None:intergenic | 30.0% |
| !!! | GAACGATGTTTTGTTGATTT+AGG | - | tig0028837:51538-51557 | None:intergenic | 30.0% |
| !! | AGCATTGATTAATATACCTG+AGG | - | tig0028837:51925-51944 | None:intergenic | 30.0% |
| !! | AAAGAGTATCTATTTACCTG+AGG | - | tig0028837:52249-52268 | None:intergenic | 30.0% |
| TTGATGAGGTTAAATTGCAA+TGG | + | tig0028837:52304-52323 | Msa1439750:intron | 30.0% | |
| !!! | TGTTTTGTTGATTTAGGGTT+TGG | - | tig0028837:51532-51551 | None:intergenic | 30.0% |
| !!! | GAACGATGTTTTGTTGATTT+AGG | - | tig0028837:51538-51557 | None:intergenic | 30.0% |
| !! | AGCATTGATTAATATACCTG+AGG | - | tig0028837:51925-51944 | None:intergenic | 30.0% |
| !! | AAAGAGTATCTATTTACCTG+AGG | - | tig0028837:52249-52268 | None:intergenic | 30.0% |
| TTGATGAGGTTAAATTGCAA+TGG | + | tig0028837:52304-52323 | Msa1439750:intron | 30.0% | |
| AATGGATATGTCTGTGGATT+GGG | - | tig0028837:51498-51517 | None:intergenic | 35.0% | |
| AAATGGATATGTCTGTGGAT+TGG | - | tig0028837:51499-51518 | None:intergenic | 35.0% | |
| AATCCACAGACATATCCATT+TGG | + | tig0028837:51498-51517 | Msa1439750:five_prime_UTR | 35.0% | |
| !! | TTTGTTGATTTAGGGTTTGG+AGG | - | tig0028837:51529-51548 | None:intergenic | 35.0% |
| GATGAAGAGAAGAGAATCTA+GGG | - | tig0028837:51648-51667 | None:intergenic | 35.0% | |
| AGATGAAGAGAAGAGAATCT+AGG | - | tig0028837:51649-51668 | None:intergenic | 35.0% | |
| TGACGATGATGTTATTCAAG+AGG | + | tig0028837:52017-52036 | Msa1439750:CDS | 35.0% | |
| TGTTATTCAAGAGGAGAATC+TGG | + | tig0028837:52026-52045 | Msa1439750:CDS | 35.0% | |
| !! | TCAGATTGGTGCTATTAAAG+AGG | + | tig0028837:52152-52171 | Msa1439750:CDS | 35.0% |
| !! | ATTGGTGCTATTAAAGAGGA+TGG | + | tig0028837:52156-52175 | Msa1439750:CDS | 35.0% |
| ! | TTTTCAGTAGAAGGATCAAC+AGG | - | tig0028837:52192-52211 | None:intergenic | 35.0% |
| ATTTAACCTCATCAAACCGA+TGG | - | tig0028837:52299-52318 | None:intergenic | 35.0% | |
| AATGGATATGTCTGTGGATT+GGG | - | tig0028837:51498-51517 | None:intergenic | 35.0% | |
| AAATGGATATGTCTGTGGAT+TGG | - | tig0028837:51499-51518 | None:intergenic | 35.0% | |
| AATCCACAGACATATCCATT+TGG | + | tig0028837:51498-51517 | Msa1439750:five_prime_UTR | 35.0% | |
| !! | TTTGTTGATTTAGGGTTTGG+AGG | - | tig0028837:51529-51548 | None:intergenic | 35.0% |
| GATGAAGAGAAGAGAATCTA+GGG | - | tig0028837:51648-51667 | None:intergenic | 35.0% | |
| AGATGAAGAGAAGAGAATCT+AGG | - | tig0028837:51649-51668 | None:intergenic | 35.0% | |
| TGACGATGATGTTATTCAAG+AGG | + | tig0028837:52017-52036 | Msa1439750:CDS | 35.0% | |
| TGTTATTCAAGAGGAGAATC+TGG | + | tig0028837:52026-52045 | Msa1439750:CDS | 35.0% | |
| !! | TCAGATTGGTGCTATTAAAG+AGG | + | tig0028837:52152-52171 | Msa1439750:CDS | 35.0% |
| !! | ATTGGTGCTATTAAAGAGGA+TGG | + | tig0028837:52156-52175 | Msa1439750:CDS | 35.0% |
| ! | TTTTCAGTAGAAGGATCAAC+AGG | - | tig0028837:52192-52211 | None:intergenic | 35.0% |
| ATTTAACCTCATCAAACCGA+TGG | - | tig0028837:52299-52318 | None:intergenic | 35.0% | |
| CTTCCAAATGGATATGTCTG+TGG | - | tig0028837:51504-51523 | None:intergenic | 40.0% | |
| GAAGACAAAGCTTTGCTTCT+CGG | + | tig0028837:51836-51855 | Msa1439750:CDS | 40.0% | |
| AATGGAATCGAGATCGATAG+AGG | - | tig0028837:51873-51892 | None:intergenic | 40.0% | |
| ! | GAGAATCTGGAGTTTGATTC+TGG | + | tig0028837:52039-52058 | Msa1439750:CDS | 40.0% |
| CTGGAGTTTGATTCTGGATT+TGG | + | tig0028837:52045-52064 | Msa1439750:CDS | 40.0% | |
| TAATCTACCTGTTGTTCCCA+AGG | + | tig0028837:52086-52105 | Msa1439750:CDS | 40.0% | |
| AATTTCTCCTTGGGAACAAC+AGG | - | tig0028837:52096-52115 | None:intergenic | 40.0% | |
| AGCTTCTCGAATTTCTCCTT+GGG | - | tig0028837:52105-52124 | None:intergenic | 40.0% | |
| AAGCTTCTCGAATTTCTCCT+TGG | - | tig0028837:52106-52125 | None:intergenic | 40.0% | |
| CTATTAAAGAGGATGGTCTC+TGG | + | tig0028837:52163-52182 | Msa1439750:CDS | 40.0% | |
| TCCTTCTACTGAAAAGTCCT+TGG | + | tig0028837:52197-52216 | Msa1439750:CDS | 40.0% | |
| CCTTCTACTGAAAAGTCCTT+GGG | + | tig0028837:52198-52217 | Msa1439750:CDS | 40.0% | |
| CATTGAGTACAATACTCCTC+AGG | + | tig0028837:52230-52249 | Msa1439750:CDS | 40.0% | |
| !!! | GTTTTACCATCGGTTTGATG+AGG | + | tig0028837:52290-52309 | Msa1439750:intron | 40.0% |
| CTTGCTAAAGAGAAGACTCA+AGG | + | tig0028837:52345-52364 | Msa1439750:CDS | 40.0% | |
| GAAGACTCAAGGATACAAAC+TGG | + | tig0028837:52356-52375 | Msa1439750:CDS | 40.0% | |
| CAAACAAGGAATATGCTCCA+GGG | + | tig0028837:52460-52479 | Msa1439750:CDS | 40.0% | |
| CTTCCAAATGGATATGTCTG+TGG | - | tig0028837:51504-51523 | None:intergenic | 40.0% | |
| GAAGACAAAGCTTTGCTTCT+CGG | + | tig0028837:51836-51855 | Msa1439750:CDS | 40.0% | |
| AATGGAATCGAGATCGATAG+AGG | - | tig0028837:51873-51892 | None:intergenic | 40.0% | |
| ! | GAGAATCTGGAGTTTGATTC+TGG | + | tig0028837:52039-52058 | Msa1439750:CDS | 40.0% |
| CTGGAGTTTGATTCTGGATT+TGG | + | tig0028837:52045-52064 | Msa1439750:CDS | 40.0% | |
| TAATCTACCTGTTGTTCCCA+AGG | + | tig0028837:52086-52105 | Msa1439750:CDS | 40.0% | |
| AATTTCTCCTTGGGAACAAC+AGG | - | tig0028837:52096-52115 | None:intergenic | 40.0% | |
| AGCTTCTCGAATTTCTCCTT+GGG | - | tig0028837:52105-52124 | None:intergenic | 40.0% | |
| AAGCTTCTCGAATTTCTCCT+TGG | - | tig0028837:52106-52125 | None:intergenic | 40.0% | |
| CTATTAAAGAGGATGGTCTC+TGG | + | tig0028837:52163-52182 | Msa1439750:CDS | 40.0% | |
| TCCTTCTACTGAAAAGTCCT+TGG | + | tig0028837:52197-52216 | Msa1439750:CDS | 40.0% | |
| CCTTCTACTGAAAAGTCCTT+GGG | + | tig0028837:52198-52217 | Msa1439750:CDS | 40.0% | |
| CATTGAGTACAATACTCCTC+AGG | + | tig0028837:52230-52249 | Msa1439750:CDS | 40.0% | |
| !!! | GTTTTACCATCGGTTTGATG+AGG | + | tig0028837:52290-52309 | Msa1439750:intron | 40.0% |
| CTTGCTAAAGAGAAGACTCA+AGG | + | tig0028837:52345-52364 | Msa1439750:CDS | 40.0% | |
| GAAGACTCAAGGATACAAAC+TGG | + | tig0028837:52356-52375 | Msa1439750:CDS | 40.0% | |
| !! | ATATGTCTGTGGATTGGGCT+CGG | - | tig0028837:51493-51512 | None:intergenic | 45.0% |
| ATCGGTAGAGTTCAGTGCAA+CGG | - | tig0028837:51574-51593 | None:intergenic | 45.0% | |
| CAGCCAGGTTTAGTTGTTGA+CGG | - | tig0028837:51602-51621 | None:intergenic | 45.0% | |
| GGATTCTTACCGTTTACCGA+CGG | - | tig0028837:51627-51646 | None:intergenic | 45.0% | |
| TTAGCGTTGTCGCAGTGAAA+TGG | - | tig0028837:51750-51769 | None:intergenic | 45.0% | |
| GCGACAACGCTAAAGCTTTA+CGG | + | tig0028837:51757-51776 | Msa1439750:five_prime_UTR | 45.0% | |
| ATTGCGGTGGTGAGTGATTA+TGG | - | tig0028837:51785-51804 | None:intergenic | 45.0% | |
| CATTACATCCGCCATGATTG+CGG | - | tig0028837:51801-51820 | None:intergenic | 45.0% | |
| ! | CCCAAGGACTTTTCAGTAGA+AGG | - | tig0028837:52201-52220 | None:intergenic | 45.0% |
| CTCAATGAAGCAGTAACCCA+AGG | - | tig0028837:52217-52236 | None:intergenic | 45.0% | |
| ! | GCATATTCCTTGTTTGGAGG+AGG | - | tig0028837:52456-52475 | None:intergenic | 45.0% |
| ! | GGAGCATATTCCTTGTTTGG+AGG | - | tig0028837:52459-52478 | None:intergenic | 45.0% |
| CCTGGAGCATATTCCTTGTT+TGG | - | tig0028837:52462-52481 | None:intergenic | 45.0% | |
| CCAAACAAGGAATATGCTCC+AGG | + | tig0028837:52459-52478 | Msa1439750:CDS | 45.0% | |
| !! | ATATGTCTGTGGATTGGGCT+CGG | - | tig0028837:51493-51512 | None:intergenic | 45.0% |
| ATCGGTAGAGTTCAGTGCAA+CGG | - | tig0028837:51574-51593 | None:intergenic | 45.0% | |
| CAGCCAGGTTTAGTTGTTGA+CGG | - | tig0028837:51602-51621 | None:intergenic | 45.0% | |
| GGATTCTTACCGTTTACCGA+CGG | - | tig0028837:51627-51646 | None:intergenic | 45.0% | |
| TTAGCGTTGTCGCAGTGAAA+TGG | - | tig0028837:51750-51769 | None:intergenic | 45.0% | |
| GCGACAACGCTAAAGCTTTA+CGG | + | tig0028837:51757-51776 | Msa1439750:five_prime_UTR | 45.0% | |
| ATTGCGGTGGTGAGTGATTA+TGG | - | tig0028837:51785-51804 | None:intergenic | 45.0% | |
| CATTACATCCGCCATGATTG+CGG | - | tig0028837:51801-51820 | None:intergenic | 45.0% | |
| ! | CCCAAGGACTTTTCAGTAGA+AGG | - | tig0028837:52201-52220 | None:intergenic | 45.0% |
| CTCAATGAAGCAGTAACCCA+AGG | - | tig0028837:52217-52236 | None:intergenic | 45.0% | |
| ! | GCATATTCCTTGTTTGGAGG+AGG | - | tig0028837:52456-52475 | None:intergenic | 45.0% |
| ! | GGAGCATATTCCTTGTTTGG+AGG | - | tig0028837:52459-52478 | None:intergenic | 45.0% |
| CCTGGAGCATATTCCTTGTT+TGG | - | tig0028837:52462-52481 | None:intergenic | 45.0% | |
| CCAAACAAGGAATATGCTCC+AGG | + | tig0028837:52459-52478 | Msa1439750:CDS | 45.0% | |
| GGTTTGGAGGCTCTTCCAAA+TGG | - | tig0028837:51516-51535 | None:intergenic | 50.0% | |
| TAGTTGTTGACGGCGGCAAT+CGG | - | tig0028837:51592-51611 | None:intergenic | 50.0% | |
| CCAGGTTTAGTTGTTGACGG+CGG | - | tig0028837:51599-51618 | None:intergenic | 50.0% | |
| ATCACTCACCACCGCAATCA+TGG | + | tig0028837:51787-51806 | Msa1439750:exon | 50.0% | |
| GATTCCATTCACCTTCCTCC+AGG | + | tig0028837:51884-51903 | Msa1439750:CDS | 50.0% | |
| !! | TCATGAAAGTGCCAGACGAG+TGG | + | tig0028837:52427-52446 | Msa1439750:CDS | 50.0% |
| !! | CATGAAAGTGCCAGACGAGT+GGG | + | tig0028837:52428-52447 | Msa1439750:CDS | 50.0% |
| GGTTTGGAGGCTCTTCCAAA+TGG | - | tig0028837:51516-51535 | None:intergenic | 50.0% | |
| TAGTTGTTGACGGCGGCAAT+CGG | - | tig0028837:51592-51611 | None:intergenic | 50.0% | |
| CCAGGTTTAGTTGTTGACGG+CGG | - | tig0028837:51599-51618 | None:intergenic | 50.0% | |
| ATCACTCACCACCGCAATCA+TGG | + | tig0028837:51787-51806 | Msa1439750:exon | 50.0% | |
| GATTCCATTCACCTTCCTCC+AGG | + | tig0028837:51884-51903 | Msa1439750:CDS | 50.0% | |
| !! | TCATGAAAGTGCCAGACGAG+TGG | + | tig0028837:52427-52446 | Msa1439750:CDS | 50.0% |
| !! | CATGAAAGTGCCAGACGAGT+GGG | + | tig0028837:52428-52447 | Msa1439750:CDS | 50.0% |
| ! | TCAGTGCAACGGAAGCGCAA+GGG | - | tig0028837:51563-51582 | None:intergenic | 55.0% |
| ! | TTCAGTGCAACGGAAGCGCA+AGG | - | tig0028837:51564-51583 | None:intergenic | 55.0% |
| CCGCCGTCAACAACTAAACC+TGG | + | tig0028837:51596-51615 | Msa1439750:five_prime_UTR | 55.0% | |
| ACTAAACCTGGCTGTGCCGT+CGG | + | tig0028837:51608-51627 | Msa1439750:five_prime_UTR | 55.0% | |
| ACTCACCACCGCAATCATGG+CGG | + | tig0028837:51790-51809 | Msa1439750:exon | 55.0% | |
| TACATCCGCCATGATTGCGG+TGG | - | tig0028837:51798-51817 | None:intergenic | 55.0% | |
| GTCACCTGGAGGAAGGTGAA+TGG | - | tig0028837:51891-51910 | None:intergenic | 55.0% | |
| CTTCCTCCAGGTGACAACTG+CGG | + | tig0028837:51896-51915 | Msa1439750:CDS | 55.0% | |
| ATTCCGCAGTTGTCACCTGG+AGG | - | tig0028837:51902-51921 | None:intergenic | 55.0% | |
| AGGATTCCGCAGTTGTCACC+TGG | - | tig0028837:51905-51924 | None:intergenic | 55.0% | |
| GTGACAACTGCGGAATCCTC+AGG | + | tig0028837:51906-51925 | Msa1439750:CDS | 55.0% | |
| ! | TCAGTGCAACGGAAGCGCAA+GGG | - | tig0028837:51563-51582 | None:intergenic | 55.0% |
| ! | TTCAGTGCAACGGAAGCGCA+AGG | - | tig0028837:51564-51583 | None:intergenic | 55.0% |
| CCGCCGTCAACAACTAAACC+TGG | + | tig0028837:51596-51615 | Msa1439750:five_prime_UTR | 55.0% | |
| ACTAAACCTGGCTGTGCCGT+CGG | + | tig0028837:51608-51627 | Msa1439750:five_prime_UTR | 55.0% | |
| ACTCACCACCGCAATCATGG+CGG | + | tig0028837:51790-51809 | Msa1439750:exon | 55.0% | |
| TACATCCGCCATGATTGCGG+TGG | - | tig0028837:51798-51817 | None:intergenic | 55.0% | |
| GTCACCTGGAGGAAGGTGAA+TGG | - | tig0028837:51891-51910 | None:intergenic | 55.0% | |
| CTTCCTCCAGGTGACAACTG+CGG | + | tig0028837:51896-51915 | Msa1439750:CDS | 55.0% | |
| ATTCCGCAGTTGTCACCTGG+AGG | - | tig0028837:51902-51921 | None:intergenic | 55.0% | |
| AGGATTCCGCAGTTGTCACC+TGG | - | tig0028837:51905-51924 | None:intergenic | 55.0% | |
| GTGACAACTGCGGAATCCTC+AGG | + | tig0028837:51906-51925 | Msa1439750:CDS | 55.0% | |
| ! | CAGTGCAACGGAAGCGCAAG+GGG | - | tig0028837:51562-51581 | None:intergenic | 60.0% |
| CTGGCTGTGCCGTCGGTAAA+CGG | + | tig0028837:51615-51634 | Msa1439750:five_prime_UTR | 60.0% | |
| CGCAGTTGTCACCTGGAGGA+AGG | - | tig0028837:51898-51917 | None:intergenic | 60.0% | |
| GTGGGCTCCTCCTCCAAACA+AGG | + | tig0028837:52446-52465 | Msa1439750:CDS | 60.0% | |
| ! | CAGTGCAACGGAAGCGCAAG+GGG | - | tig0028837:51562-51581 | None:intergenic | 60.0% |
| CTGGCTGTGCCGTCGGTAAA+CGG | + | tig0028837:51615-51634 | Msa1439750:five_prime_UTR | 60.0% | |
| CGCAGTTGTCACCTGGAGGA+AGG | - | tig0028837:51898-51917 | None:intergenic | 60.0% | |
| GTGGGCTCCTCCTCCAAACA+AGG | + | tig0028837:52446-52465 | Msa1439750:CDS | 60.0% | |
| CGTTTACCGACGGCACAGCC+AGG | - | tig0028837:51617-51636 | None:intergenic | 65.0% | |
| CGTTTACCGACGGCACAGCC+AGG | - | tig0028837:51617-51636 | None:intergenic | 65.0% | |
| GGAGGAGGAGCCCACTCGTC+TGG | - | tig0028837:52441-52460 | None:intergenic | 70.0% | |
| GGAGGAGGAGCCCACTCGTC+TGG | - | tig0028837:52441-52460 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028837 | gene | 51490 | 52482 | 51490 | ID=Msa1439750;Name=Msa1439750 |
| tig0028837 | mRNA | 51490 | 52482 | 51490 | ID=Msa1439750-mRNA-1;Parent=Msa1439750;Name=Msa1439750-mRNA-1;_AED=0.00;_eAED=0.00;_QI=209|1|1|1|0.66|0.5|4|0|169 |
| tig0028837 | exon | 51490 | 51636 | 51490 | ID=Msa1439750-mRNA-1:exon:11897;Parent=Msa1439750-mRNA-1 |
| tig0028837 | exon | 51744 | 51927 | 51744 | ID=Msa1439750-mRNA-1:exon:11898;Parent=Msa1439750-mRNA-1 |
| tig0028837 | exon | 52014 | 52251 | 52014 | ID=Msa1439750-mRNA-1:exon:11899;Parent=Msa1439750-mRNA-1 |
| tig0028837 | exon | 52336 | 52482 | 52336 | ID=Msa1439750-mRNA-1:exon:11900;Parent=Msa1439750-mRNA-1 |
| tig0028837 | five_prime_UTR | 51490 | 51636 | 51490 | ID=Msa1439750-mRNA-1:five_prime_utr;Parent=Msa1439750-mRNA-1 |
| tig0028837 | five_prime_UTR | 51744 | 51805 | 51744 | ID=Msa1439750-mRNA-1:five_prime_utr;Parent=Msa1439750-mRNA-1 |
| tig0028837 | CDS | 51806 | 51927 | 51806 | ID=Msa1439750-mRNA-1:cds;Parent=Msa1439750-mRNA-1 |
| tig0028837 | CDS | 52014 | 52251 | 52014 | ID=Msa1439750-mRNA-1:cds;Parent=Msa1439750-mRNA-1 |
| tig0028837 | CDS | 52336 | 52482 | 52336 | ID=Msa1439750-mRNA-1:cds;Parent=Msa1439750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
