AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1123640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123640 MtrunA17_Chr7g0263281 98.108 370 7 0 1 370 1 370 0.0 753
Msa1123640 MtrunA17_Chr1g0181901 70.720 403 84 3 1 369 1 403 0.0 565
Msa1123640 MtrunA17_Chr1g0213351 66.954 348 111 2 5 348 13 360 4.01e-174 489
Msa1123640 MtrunA17_Chr7g0250061 64.754 366 125 2 4 365 6 371 1.03e-168 476
Msa1123640 MtrunA17_Chr1g0211251 63.115 366 131 2 4 365 11 376 1.12e-166 471
Msa1123640 MtrunA17_Chr8g0371321 62.931 348 128 1 17 363 25 372 1.45e-164 466
Msa1123640 MtrunA17_Chr2g0294291 56.438 365 145 3 5 363 12 368 1.29e-149 427
Msa1123640 MtrunA17_Chr1g0175381 54.268 328 141 3 22 349 38 356 2.78e-127 370
Msa1123640 MtrunA17_Chr1g0207571 54.079 331 142 2 18 346 16 338 1.26e-123 361
Msa1123640 MtrunA17_Chr3g0089711 46.154 325 158 6 29 346 33 347 1.07e-96 292
Msa1123640 MtrunA17_Chr3g0089721 46.154 325 158 6 29 346 33 347 2.20e-96 291
Msa1123640 MtrunA17_Chr7g0256751 46.462 325 157 6 29 346 34 348 5.96e-91 280
Msa1123640 MtrunA17_Chr7g0256771 45.221 272 138 4 29 298 35 297 1.77e-75 236
Msa1123640 MtrunA17_Chr3g0089691 45.318 267 126 5 86 346 9 261 1.76e-72 228
Msa1123640 MtrunA17_Chr4g0063111 35.952 331 193 6 22 348 34 349 1.17e-61 206
Msa1123640 MtrunA17_Chr4g0063051 33.618 351 188 12 3 348 1 311 8.61e-47 162
Msa1123640 MtrunA17_Chr2g0295991 31.962 316 169 7 71 345 166 476 2.75e-43 156
Msa1123640 MtrunA17_Chr7g0238501 29.530 298 181 6 71 349 263 550 2.07e-39 147
Msa1123640 MtrunA17_Chr4g0067301 29.483 329 173 7 71 345 164 487 1.05e-38 144
Msa1123640 MtrunA17_Chr4g0039061 30.435 299 176 7 70 349 201 486 2.20e-37 140
Msa1123640 MtrunA17_Chr7g0256761 41.117 197 93 5 159 350 7 185 4.71e-36 130
Msa1123640 MtrunA17_Chr4g0031521 30.466 279 152 6 108 349 426 699 1.83e-34 134
Msa1123640 MtrunA17_Chr1g0193691 29.236 301 148 5 109 349 592 887 2.09e-33 131
Msa1123640 MtrunA17_Chr4g0054811 29.450 309 159 6 102 356 475 778 1.39e-32 129
Msa1123640 MtrunA17_Chr3g0105371 30.686 277 136 7 70 345 117 338 5.70e-32 123
Msa1123640 MtrunA17_Chr5g0430481 34.529 223 104 6 70 291 153 334 1.10e-31 123
Msa1123640 MtrunA17_Chr3g0105351 29.964 277 138 7 70 345 93 314 1.77e-30 118
Msa1123640 MtrunA17_Chr1g0212961 28.710 310 148 9 47 353 106 345 1.32e-26 108
Msa1123640 MtrunA17_Chr1g0150451 30.627 271 138 9 47 313 88 312 4.07e-24 101
Msa1123640 MtrunA17_Chr4g0050381 30.877 285 144 12 35 314 30 266 4.90e-24 100
Msa1123640 MtrunA17_Chr2g0317021 30.576 278 128 10 71 345 117 332 5.49e-24 100
Msa1123640 MtrunA17_Chr3g0126511 30.870 230 112 6 66 291 120 306 7.36e-24 101
Msa1123640 MtrunA17_Chr5g0426141 31.034 319 144 13 31 343 31 279 7.72e-24 99.8
Msa1123640 MtrunA17_Chr3g0136711 29.000 300 144 11 47 343 45 278 1.66e-23 99.0
Msa1123640 MtrunA17_Chr5g0407161 29.371 286 129 9 71 346 124 346 1.89e-23 100
Msa1123640 MtrunA17_Chr4g0070871 29.297 256 122 7 54 291 231 445 9.13e-22 96.7
Msa1123640 MtrunA17_Chr2g0279151 29.078 282 137 9 64 343 58 278 1.54e-21 93.2
Msa1123640 MtrunA17_Chr4g0062951 32.065 184 115 6 105 279 1 183 1.95e-21 90.5
Msa1123640 MtrunA17_Chr3g0115851 28.797 316 155 13 31 343 31 279 1.21e-20 90.9
Msa1123640 MtrunA17_Chr8g0360351 27.187 320 164 12 30 346 29 282 1.33e-20 90.5
Msa1123640 MtrunA17_Chr2g0293811 29.825 285 141 9 70 346 99 332 2.31e-20 91.3
Msa1123640 MtrunA17_Chr1g0171571 29.537 281 140 10 72 347 419 646 4.17e-20 92.0
Msa1123640 MtrunA17_Chr3g0144111 28.223 287 116 9 69 347 25 229 4.39e-20 88.6
Msa1123640 MtrunA17_Chr3g0138281 28.421 285 143 11 66 345 117 345 2.32e-19 88.6
Msa1123640 MtrunA17_Chr4g0065141 28.777 278 142 9 70 343 123 348 3.17e-19 88.2
Msa1123640 MtrunA17_Chr3g0135961 28.197 305 160 12 60 345 275 539 3.74e-19 89.0
Msa1123640 MtrunA17_Chr1g0158781 27.726 321 176 11 35 349 113 383 1.27e-18 86.7
Msa1123640 MtrunA17_Chr5g0435721 27.586 232 129 5 68 292 220 419 8.33e-18 84.7
Msa1123640 MtrunA17_Chr3g0112291 25.000 296 158 10 71 345 123 375 9.24e-18 84.0
Msa1123640 MtrunA17_Chr4g0051661 28.926 242 125 10 71 308 183 381 1.60e-17 83.2
Msa1123640 MtrunA17_Chr1g0150781 27.419 310 149 12 67 348 285 546 2.03e-17 83.6
Msa1123640 MtrunA17_Chr7g0223641 30.493 223 110 7 135 345 7 196 3.00e-17 79.7
Msa1123640 MtrunA17_Chr1g0194191 26.573 286 149 11 70 346 117 350 1.28e-16 80.5
Msa1123640 MtrunA17_Chr3g0136811 25.614 285 138 10 52 292 33 287 2.13e-16 79.7
Msa1123640 MtrunA17_Chr1g0150071 26.592 267 122 10 70 292 51 287 8.89e-16 77.8
Msa1123640 MtrunA17_Chr2g0295401 28.873 284 148 11 71 326 92 349 1.34e-15 77.4
Msa1123640 MtrunA17_Chr7g0221691 32.075 159 90 5 152 309 245 386 8.28e-15 75.5
Msa1123640 MtrunA17_Chr4g0004971 26.154 325 160 14 63 351 69 349 1.18e-13 71.6
Msa1123640 MtrunA17_Chr8g0342431 31.928 166 83 5 152 310 210 352 2.47e-13 70.9
Msa1123640 MtrunA17_Chr3g0127091 26.482 253 138 10 70 297 88 317 9.87e-13 68.9
Msa1123640 MtrunA17_Chr5g0396731 24.399 291 165 7 71 349 107 354 1.00e-12 68.6
Msa1123640 MtrunA17_Chr1g0151781 27.170 265 136 10 56 292 53 288 3.03e-12 67.0
Msa1123640 MtrunA17_Chr1g0192421 27.465 284 152 13 71 326 89 346 6.77e-12 66.2
Msa1123640 MtrunA17_Chr4g0067711 30.000 200 104 8 138 326 174 348 7.50e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123640 AT3G12620.2 66.304 368 121 1 1 365 10 377 0.0 511
Msa1123640 AT3G12620.1 66.304 368 121 1 1 365 10 377 0.0 511
Msa1123640 AT3G55050.1 64.481 366 121 2 5 365 13 374 7.25e-177 497
Msa1123640 AT3G55050.2 64.481 366 121 2 5 365 13 374 7.25e-177 497
Msa1123640 AT3G51370.1 65.994 347 116 1 19 365 27 371 6.11e-174 489
Msa1123640 AT3G51370.3 65.994 347 116 1 19 365 27 371 6.11e-174 489
Msa1123640 AT5G66080.1 64.857 350 121 2 18 365 28 377 1.49e-168 476
Msa1123640 AT4G38520.2 62.178 349 131 1 16 363 26 374 1.48e-165 469
Msa1123640 AT4G38520.1 62.178 349 131 1 16 363 26 374 1.48e-165 469
Msa1123640 AT5G02760.1 62.264 371 136 3 1 370 1 368 8.96e-162 458
Msa1123640 AT3G17090.1 57.270 337 132 4 24 358 45 371 1.23e-135 392
Msa1123640 AT3G51370.2 64.130 276 97 1 90 365 13 286 2.30e-131 378
Msa1123640 AT5G66080.2 65.428 269 92 1 98 365 5 273 1.18e-127 368
Msa1123640 AT4G33920.1 51.862 349 149 3 22 359 20 360 1.51e-124 364
Msa1123640 AT5G06750.3 49.856 347 163 2 24 367 43 381 1.22e-119 352
Msa1123640 AT5G06750.1 49.856 347 163 2 24 367 43 381 1.22e-119 352
Msa1123640 AT3G17090.2 55.797 276 110 4 24 297 45 310 1.50e-106 316
Msa1123640 AT4G33920.2 53.480 273 116 2 98 359 5 277 1.65e-98 295
Msa1123640 AT5G06750.2 51.852 270 127 1 101 367 30 299 7.76e-94 283
Msa1123640 AT4G33920.3 54.656 247 101 2 124 359 1 247 3.65e-91 275
Msa1123640 AT3G16560.1 31.310 313 170 7 71 345 175 480 2.00e-42 154
Msa1123640 AT3G16560.4 31.310 313 170 7 71 345 175 480 2.00e-42 154
Msa1123640 AT3G16560.2 31.310 313 170 7 71 345 175 480 2.00e-42 154
Msa1123640 AT1G07160.1 34.520 281 129 7 67 345 149 376 7.19e-38 140
Msa1123640 AT5G02400.1 31.884 276 149 5 108 349 399 669 3.93e-37 142
Msa1123640 AT2G46920.3 28.713 303 150 5 108 349 542 839 2.35e-35 137
Msa1123640 AT2G46920.1 28.713 303 150 5 108 349 542 839 2.35e-35 137
Msa1123640 AT2G46920.2 28.713 303 150 5 108 349 542 839 2.35e-35 137
Msa1123640 AT2G46920.4 28.713 303 150 5 108 349 542 839 2.35e-35 137
Msa1123640 AT3G09400.1 30.037 273 151 6 108 349 382 645 8.67e-35 135
Msa1123640 AT1G07630.1 29.032 279 156 5 108 349 384 657 1.38e-34 135
Msa1123640 AT2G28890.1 29.391 279 155 5 108 349 376 649 1.88e-34 134
Msa1123640 AT2G40180.1 31.683 303 136 10 58 345 139 385 7.09e-34 129
Msa1123640 AT3G16560.3 30.742 283 151 7 71 315 175 450 2.33e-33 129
Msa1123640 AT2G35350.1 28.383 303 161 6 102 358 486 778 4.06e-33 131
Msa1123640 AT2G30020.1 32.975 279 129 9 70 345 169 392 4.02e-30 119
Msa1123640 AT1G67820.2 34.222 225 105 5 70 292 114 297 1.19e-28 115
Msa1123640 AT1G67820.1 34.222 225 105 5 70 292 150 333 1.63e-28 115
Msa1123640 AT2G33700.1 32.877 292 117 12 69 347 121 346 1.54e-25 106
Msa1123640 AT3G09400.2 28.870 239 130 6 108 315 382 611 1.57e-25 108
Msa1123640 AT4G31750.2 30.147 272 139 9 47 313 44 269 8.40e-25 103
Msa1123640 AT4G31750.1 30.147 272 139 9 47 313 44 269 1.02e-24 103
Msa1123640 AT4G31750.3 30.147 272 139 9 47 313 44 269 1.02e-24 103
Msa1123640 AT3G51470.2 28.763 299 137 11 62 348 52 286 3.04e-24 102
Msa1123640 AT3G51470.1 28.763 299 137 11 62 348 96 330 6.10e-24 101
Msa1123640 AT1G43900.1 32.526 289 121 11 62 343 145 366 1.12e-23 101
Msa1123640 AT5G10740.1 30.556 288 146 11 31 313 30 268 1.42e-23 100
Msa1123640 AT5G10740.2 30.556 288 146 11 31 313 30 268 1.42e-23 100
Msa1123640 AT1G78200.1 29.393 313 152 12 35 343 33 280 7.25e-23 97.4
Msa1123640 AT1G78200.3 29.393 313 152 12 35 343 33 280 7.25e-23 97.4
Msa1123640 AT1G78200.2 29.393 313 152 12 35 343 33 280 7.25e-23 97.4
Msa1123640 AT5G53140.1 26.756 299 146 9 71 359 132 367 4.07e-22 97.4
Msa1123640 AT5G53140.2 26.756 299 146 9 71 359 132 367 4.07e-22 97.4
Msa1123640 AT1G78200.5 29.021 286 139 10 62 343 10 235 5.66e-22 94.0
Msa1123640 AT1G78200.4 29.021 286 139 10 62 343 10 235 5.66e-22 94.0
Msa1123640 AT2G25620.1 28.165 316 165 13 43 348 96 359 7.41e-22 96.3
Msa1123640 AT2G25620.2 28.165 316 165 13 43 348 96 359 7.41e-22 96.3
Msa1123640 AT4G28400.3 30.315 254 129 9 66 314 40 250 1.84e-21 92.8
Msa1123640 AT5G24940.1 29.825 285 146 11 31 310 30 265 2.98e-21 95.1
Msa1123640 AT4G28400.1 29.371 286 133 10 66 346 62 283 3.36e-21 92.8
Msa1123640 AT2G20630.1 29.242 277 129 10 71 343 63 276 8.70e-21 91.7
Msa1123640 AT2G20630.2 28.986 276 129 10 71 342 63 275 4.81e-20 89.7
Msa1123640 AT1G07430.1 28.696 230 124 5 71 292 157 354 7.36e-20 90.9
Msa1123640 AT1G34750.2 28.526 312 152 12 38 345 37 281 2.23e-19 87.4
Msa1123640 AT1G34750.1 28.526 312 152 12 38 345 37 281 2.23e-19 87.4
Msa1123640 AT1G34750.3 28.526 312 152 12 38 345 37 281 2.23e-19 87.4
Msa1123640 AT2G29380.1 28.571 301 162 10 57 345 101 360 2.61e-19 88.6
Msa1123640 AT1G48040.1 30.088 339 156 14 39 359 81 356 2.65e-19 89.0
Msa1123640 AT3G17250.1 28.571 273 140 10 62 314 142 379 3.84e-19 88.6
Msa1123640 AT1G22280.3 28.349 321 160 13 29 343 28 284 5.20e-19 86.7
Msa1123640 AT4G08260.1 27.698 278 112 10 70 345 18 208 6.65e-19 84.7
Msa1123640 AT4G26080.1 26.087 322 184 10 54 361 153 434 1.66e-18 87.0
Msa1123640 AT1G22280.1 28.481 316 160 12 29 343 28 278 1.92e-18 84.7
Msa1123640 AT3G62260.3 30.242 248 134 9 71 309 27 244 2.00e-18 85.1
Msa1123640 AT3G15260.2 29.603 277 128 11 71 343 73 286 2.94e-18 84.3
Msa1123640 AT3G15260.1 29.603 277 128 11 71 343 73 286 2.94e-18 84.3
Msa1123640 AT2G40860.1 28.470 281 144 8 71 347 423 650 3.27e-18 86.7
Msa1123640 AT2G40860.4 28.470 281 144 8 71 347 325 552 3.62e-18 86.3
Msa1123640 AT5G51760.2 27.083 240 124 8 71 291 114 321 4.82e-18 85.1
Msa1123640 AT5G51760.1 27.083 240 124 8 71 291 144 351 6.12e-18 85.1
Msa1123640 AT3G62260.1 30.242 248 134 9 71 309 116 333 7.20e-18 84.7
Msa1123640 AT3G62260.2 30.242 248 134 9 71 309 117 334 7.26e-18 84.7
Msa1123640 AT2G34740.1 28.938 273 148 10 44 314 96 324 1.11e-17 83.6
Msa1123640 AT2G25070.1 25.887 282 141 8 52 292 33 287 2.20e-17 82.8
Msa1123640 AT2G25070.2 25.887 282 141 8 52 292 33 287 2.20e-17 82.8
Msa1123640 AT3G16800.2 28.428 299 153 12 70 347 92 350 2.34e-17 82.8
Msa1123640 AT3G16800.1 28.428 299 153 12 70 347 92 350 2.34e-17 82.8
Msa1123640 AT3G16800.3 28.428 299 153 12 70 347 92 350 2.34e-17 82.8
Msa1123640 AT5G59220.1 28.384 229 123 6 71 292 148 342 6.42e-17 82.0
Msa1123640 AT3G16800.4 29.832 238 117 9 122 347 56 255 8.71e-17 79.7
Msa1123640 AT3G16800.6 29.832 238 117 9 122 347 56 255 8.71e-17 79.7
Msa1123640 AT2G40860.2 28.226 248 137 7 71 311 423 636 2.12e-16 81.3
Msa1123640 AT1G72770.4 27.308 260 121 5 60 291 227 446 2.46e-16 80.9
Msa1123640 AT1G72770.1 27.308 260 121 5 60 291 227 446 2.46e-16 80.9
Msa1123640 AT1G72770.3 27.308 260 121 5 60 291 227 446 2.46e-16 80.9
Msa1123640 AT2G34740.2 29.289 239 124 9 44 281 110 304 4.30e-16 79.0
Msa1123640 AT1G17550.1 26.603 312 151 12 71 348 237 504 4.41e-16 80.1
Msa1123640 AT1G17550.2 26.603 312 151 12 71 348 237 504 4.41e-16 80.1
Msa1123640 AT2G34740.3 29.289 239 124 9 44 281 92 286 4.41e-16 78.6
Msa1123640 AT1G18030.1 28.736 261 129 9 72 311 110 334 2.08e-15 77.0
Msa1123640 AT5G27930.1 28.000 300 152 14 71 344 92 353 4.85e-15 76.3
Msa1123640 AT5G27930.2 28.000 300 152 14 71 344 92 353 4.85e-15 76.3
Msa1123640 AT3G11410.1 24.314 255 134 7 71 308 137 349 5.42e-15 76.3
Msa1123640 AT1G34750.4 27.823 248 128 9 38 281 37 237 5.08e-14 71.6
Msa1123640 AT3G05640.2 27.957 279 152 13 71 326 93 345 5.14e-14 72.8
Msa1123640 AT3G05640.1 27.957 279 152 13 71 326 93 345 5.14e-14 72.8
Msa1123640 AT3G05640.3 27.957 279 152 13 71 326 93 345 5.14e-14 72.8
Msa1123640 AT5G26010.1 26.629 353 200 13 11 348 19 327 6.31e-14 72.4
Msa1123640 AT4G32950.1 26.014 296 167 12 64 348 65 319 1.44e-12 68.6

Find 116 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTATGAGTTCTGATTATT+TGG 0.094977 7_3:+74611775 Msa1123640:CDS
TGCTATTGTTCTTGTCTTCT+TGG 0.118706 7_3:-74611537 None:intergenic
TCTTTGCTTCTGATGGTTTA+TGG 0.141459 7_3:+74613398 Msa1123640:CDS
TCACTCCTTGTTCAATCTTT+TGG 0.144007 7_3:-74613636 None:intergenic
CAGTCTCCCACAGTAGTTTA+TGG 0.181885 7_3:+74613874 Msa1123640:three_prime_UTR
GATTTGGGAAACCATCTTTA+TGG 0.196034 7_3:+74611686 Msa1123640:CDS
GGTCCTCAAGGAACCTTTAT+AGG 0.223798 7_3:+74611797 Msa1123640:CDS
CTTTGCTTCTGATGGTTTAT+GGG 0.228766 7_3:+74613399 Msa1123640:CDS
CCCACAGTAGTTTATGGTTA+TGG 0.252793 7_3:+74613880 Msa1123640:three_prime_UTR
TGAGAGCATACTCTTGAAAT+TGG 0.253266 7_3:-74611879 None:intergenic
AGGTTTCTTTCATTCTTTCT+AGG 0.264590 7_3:-74613776 None:intergenic
ACTGAGAATTGGCTTGAAAA+AGG 0.264897 7_3:-74613323 None:intergenic
GAGCTATTATCAATCAGTTT+TGG 0.288253 7_3:-74613706 None:intergenic
ATTGTTATGGTACAAGGATT+TGG 0.289189 7_3:+74611670 Msa1123640:CDS
TGAAGAAAGCAGAATTTAAC+AGG 0.297447 7_3:+74613266 Msa1123640:CDS
CTGAGCATCCATTCAATACT+TGG 0.302446 7_3:+74613801 Msa1123640:three_prime_UTR
TTGTTATGGTACAAGGATTT+GGG 0.311993 7_3:+74611671 Msa1123640:CDS
AAGATGAGAAATTGATCTTC+AGG 0.326898 7_3:-74613379 None:intergenic
TATAGGTATATATATAGATT+TGG 0.334918 7_3:+74611490 Msa1123640:five_prime_UTR
ACCATCATAAACACCTATAA+AGG 0.367844 7_3:-74611810 None:intergenic
AACCACAATCTGTGAATCAT+AGG 0.369310 7_3:-74612621 None:intergenic
CCTATGAGTTCTGATTATTT+GGG 0.385684 7_3:+74611776 Msa1123640:CDS
CTAATCATGTCTATTTCTAT+AGG 0.386202 7_3:+74611473 Msa1123640:five_prime_UTR
CAACATAAATTTGTGATTGT+GGG 0.387941 7_3:-74613951 None:intergenic
GATGGCTCACTACTGAGAAT+TGG 0.390286 7_3:-74613334 None:intergenic
TTTCTCATCTTTGCTTCTGA+TGG 0.394754 7_3:+74613391 Msa1123640:CDS
ATCTGCTGGTACATGTTGTT+TGG 0.408579 7_3:+74612433 Msa1123640:CDS
TTGAAAATTCACCATAAAGA+TGG 0.408650 7_3:-74611697 None:intergenic
AATTCAAGCAAATAGTTCAT+TGG 0.412793 7_3:+74611727 Msa1123640:CDS
TCTTGTTGTATAAAGAAGAT+AGG 0.421011 7_3:+74613833 Msa1123640:three_prime_UTR
GAAGAGTGAGGAAGGGAACA+AGG 0.421093 7_3:+74612519 Msa1123640:CDS
CCGGTATAATTGACCTACTT+TGG 0.426163 7_3:-74611353 None:intergenic
TTTCAGAAAAGGTTATCAAA+AGG 0.431288 7_3:+74612339 Msa1123640:CDS
TGATTGATAATAGCTCTCTA+TGG 0.431364 7_3:+74613713 Msa1123640:CDS
GGAGACTCAAGGGCTGTGTT+AGG 0.432476 7_3:+74612497 Msa1123640:CDS
GGAAAGTTGATGGATTGTTA+TGG 0.432672 7_3:+74611657 Msa1123640:CDS
GATCGTAGCCAACTTGAATC+AGG 0.435753 7_3:+74611752 Msa1123640:CDS
TAACGATATTCACAGCTACT+TGG 0.443990 7_3:-74613435 None:intergenic
CTTCAGATATGCATCACCTA+TGG 0.450543 7_3:-74613248 None:intergenic
AAAAGTGGAATATATTGTAT+TGG 0.452819 7_3:-74611292 None:intergenic
TCAACATAAATTTGTGATTG+TGG 0.453642 7_3:-74613952 None:intergenic
CCAAAGTAGGTCAATTATAC+CGG 0.454663 7_3:+74611353 Msa1123640:five_prime_UTR
TGATGGATTGTTATGGTACA+AGG 0.456025 7_3:+74611664 Msa1123640:CDS
GCTGGTACATGTTGTTTGGC+AGG 0.456613 7_3:+74612437 Msa1123640:CDS
TAAGAAAAGTGTATAAATGA+AGG 0.465471 7_3:-74611316 None:intergenic
TTCAGAAAAGGTTATCAAAA+GGG 0.466769 7_3:+74612340 Msa1123640:CDS
TGTATAAATGAAGGGAAAAG+TGG 0.468804 7_3:-74611307 None:intergenic
AGATCAAGGGATTTCAGAAA+AGG 0.471446 7_3:+74612328 Msa1123640:CDS
CACTCTGTTTGGCGTGTGAA+AGG 0.474473 7_3:+74612650 Msa1123640:CDS
CCCAAATAATCAGAACTCAT+AGG 0.475948 7_3:-74611776 None:intergenic
TGTGTTAGGAAGAGTGAGGA+AGG 0.477652 7_3:+74612511 Msa1123640:CDS
AGCTAATAAGCTAAAATATG+AGG 0.478377 7_3:-74614087 None:intergenic
TGCTAAAACCAAGTATTGAA+TGG 0.481415 7_3:-74613809 None:intergenic
TGGTTATGAAACACTCTGTT+TGG 0.490832 7_3:+74612639 Msa1123640:CDS
AAGAGTGAGGAAGGGAACAA+GGG 0.493346 7_3:+74612520 Msa1123640:CDS
TGAGAAATTGATCTTCAGGT+TGG 0.496104 7_3:-74613375 None:intergenic
ATGTGCATTTAAAATTTGCT+TGG 0.501597 7_3:-74613999 None:intergenic
GATGTGAAAGGGAAAGTTGA+TGG 0.502197 7_3:+74611647 Msa1123640:CDS
ACCTTTATAGGTGTTTATGA+TGG 0.502488 7_3:+74611809 Msa1123640:CDS
TTGCAGGTTTCAAGATCCAT+AGG 0.507189 7_3:+74613232 Msa1123640:intron
GGTGGTGATGGAGATGTGAA+AGG 0.507401 7_3:+74611635 Msa1123640:CDS
AACTAGTACTCCCTCCGTCC+CGG 0.517064 7_3:-74611372 None:intergenic
CTGCCATCTCTGATTGAAAG+AGG 0.518398 7_3:-74613742 None:intergenic
GAAACGAAGCTTACATTGCG+TGG 0.519390 7_3:-74613466 None:intergenic
CTCTTTCAATCAGAGATGGC+AGG 0.520547 7_3:+74613743 Msa1123640:CDS
TCAACTGTGGAGGGTGGTGA+TGG 0.527360 7_3:+74611623 Msa1123640:CDS
TCCCTATGATTCACAGATTG+TGG 0.527683 7_3:+74612619 Msa1123640:CDS
ATAGGTGTTTATGATGGTCA+TGG 0.527745 7_3:+74611815 Msa1123640:CDS
AAACTGAGAGAGATGATGTT+CGG 0.531123 7_3:+74612588 Msa1123640:CDS
CTGGTACATGTTGTTTGGCA+GGG 0.535327 7_3:+74612438 Msa1123640:CDS
TCAAGCAAATAGTTCATTGG+AGG 0.537174 7_3:+74611730 Msa1123640:CDS
TATCTATGACTATATCATGC+TGG 0.539611 7_3:+74611597 Msa1123640:exon
GTCAATTATACCGGGACGGA+GGG 0.540820 7_3:+74611362 Msa1123640:five_prime_UTR
TTGAAACTTGAAGAGTCTCA+TGG 0.548045 7_3:+74613908 Msa1123640:three_prime_UTR
TCTGATTATTTGGGTCCTCA+AGG 0.548992 7_3:+74611785 Msa1123640:CDS
GCGTGTGAAAGGCATCATAC+AGG 0.551663 7_3:+74612661 Msa1123640:CDS
TGTCTCTTGTGAAGAAGCAA+TGG 0.558482 7_3:+74612390 Msa1123640:CDS
AGTCTAAACTTCTGTGGCAG+AGG 0.558697 7_3:-74613292 None:intergenic
GTGGTGATGGAGATGTGAAA+GGG 0.558872 7_3:+74611636 Msa1123640:CDS
AAGAAAAGTGTATAAATGAA+GGG 0.563436 7_3:-74611315 None:intergenic
TTGCAAATGCAGGAGACTCA+AGG 0.563487 7_3:+74612486 Msa1123640:CDS
TCTCCTCTTTCAATCAGAGA+TGG 0.566031 7_3:+74613739 Msa1123640:CDS
TCATAGGTCCTGATTCAAGT+TGG 0.579655 7_3:-74611760 None:intergenic
CAATTACTGTAATATCATCA+TGG 0.580958 7_3:-74613669 None:intergenic
ACCACAATCTGTGAATCATA+GGG 0.581742 7_3:-74612620 None:intergenic
TGCAAATGCAGGAGACTCAA+GGG 0.586962 7_3:+74612487 Msa1123640:CDS
TATTAGCTCAAACTCAAGCA+AGG 0.587242 7_3:+74614102 Msa1123640:three_prime_UTR
CCATAACCATAAACTACTGT+GGG 0.588499 7_3:-74613880 None:intergenic
TGCTGGAAATCAACTGTGGA+GGG 0.596448 7_3:+74611614 Msa1123640:CDS
TCAGGTAGTCTAAACTTCTG+TGG 0.603011 7_3:-74613298 None:intergenic
ACATTGTGATCTGATTATGA+AGG 0.605518 7_3:+74614018 Msa1123640:three_prime_UTR
CTAAAATATGAGGCCAATGG+TGG 0.609733 7_3:-74614077 None:intergenic
ATGCTGTATATTGCAAATGC+AGG 0.610667 7_3:+74612476 Msa1123640:CDS
AAGCTAAAATATGAGGCCAA+TGG 0.612731 7_3:-74614080 None:intergenic
AAACCACAGATAGCATCTGC+TGG 0.614223 7_3:+74612419 Msa1123640:CDS
ACCATAACCATAAACTACTG+TGG 0.618055 7_3:-74613881 None:intergenic
AGTACTAGTTTCTCATCCCA+AGG 0.618311 7_3:+74611385 Msa1123640:five_prime_UTR
CAAAGTAGGTCAATTATACC+GGG 0.619620 7_3:+74611354 Msa1123640:five_prime_UTR
GACCTCCAAAAGATTGAACA+AGG 0.625989 7_3:+74613631 Msa1123640:CDS
TTGGCAGGGATAATTTGCAA+TGG 0.628153 7_3:+74612452 Msa1123640:CDS
AAAAGATTGAACAAGGAGTG+AGG 0.629700 7_3:+74613638 Msa1123640:CDS
ATTAGCTCAAACTCAAGCAA+GGG 0.643945 7_3:+74614103 Msa1123640:three_prime_UTR
GGTCAATTATACCGGGACGG+AGG 0.644261 7_3:+74611361 Msa1123640:five_prime_UTR
GTAGGTCAATTATACCGGGA+CGG 0.655110 7_3:+74611358 Msa1123640:five_prime_UTR
ATGCTGGAAATCAACTGTGG+AGG 0.664898 7_3:+74611613 Msa1123640:CDS
ATCATGCTGGAAATCAACTG+TGG 0.668033 7_3:+74611610 Msa1123640:CDS
TCATGTAACAGGGAATAGCA+AGG 0.668087 7_3:+74613551 Msa1123640:intron
GTGTTAGGAAGAGTGAGGAA+GGG 0.687678 7_3:+74612512 Msa1123640:CDS
GTACCAGCAGATGCTATCTG+TGG 0.690814 7_3:-74612422 None:intergenic
TATTGAATGGATGCTCAGAG+AGG 0.694968 7_3:-74613796 None:intergenic
ACACCTATAAAGGTTCCTTG+AGG 0.699526 7_3:-74611800 None:intergenic
GGTGTTTATGATGGTCATGG+TGG 0.701467 7_3:+74611818 Msa1123640:CDS
TGGAAATCAACTGTGGAGGG+TGG 0.718714 7_3:+74611617 Msa1123640:CDS
GGGCTGTGTTAGGAAGAGTG+AGG 0.729065 7_3:+74612507 Msa1123640:CDS
GAAGAAAGCAGAATTTAACA+GGG 0.732756 7_3:+74613267 Msa1123640:CDS
TGTAACAGGGAATAGCAAGG+AGG 0.777684 7_3:+74613554 Msa1123640:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTATTAAGTATGATTT+TGG + chr7_3:74612713-74612732 Msa1123640:intron 10.0%
!! TTAAAAAAAATAAGATTTCT+AGG - chr7_3:74613151-74613170 None:intergenic 10.0%
!!! ATTTTTTTTAAGTTTCTATA+TGG + chr7_3:74613160-74613179 Msa1123640:intron 10.0%
!! TATAGGTATATATATAGATT+TGG + chr7_3:74611490-74611509 Msa1123640:five_prime_UTR 15.0%
!!! TATAGTCATAGATAATTTTT+TGG - chr7_3:74611591-74611610 None:intergenic 15.0%
!!! CTTTTATTACAAACATATAT+TGG + chr7_3:74611903-74611922 Msa1123640:intron 15.0%
!! AAATCAATATATAAGAATAC+CGG - chr7_3:74612276-74612295 None:intergenic 15.0%
!!! ATTTTATGAATTGATATTGA+TGG - chr7_3:74613355-74613374 None:intergenic 15.0%
!! AAAAGTGGAATATATTGTAT+TGG - chr7_3:74611295-74611314 None:intergenic 20.0%
!!! AAGAAAAGTGTATAAATGAA+GGG - chr7_3:74611318-74611337 None:intergenic 20.0%
!!! TAAGAAAAGTGTATAAATGA+AGG - chr7_3:74611319-74611338 None:intergenic 20.0%
!!! ATTTTAGCTAAAAAACAAGT+TGG - chr7_3:74611443-74611462 None:intergenic 20.0%
!! ACAAACATATATTGGAAATA+TGG + chr7_3:74611911-74611930 Msa1123640:intron 20.0%
!!! TTTCTGAAATAGTTGTAAAT+TGG + chr7_3:74612214-74612233 Msa1123640:intron 20.0%
!! TTATATACCAATAATTACAG+CGG - chr7_3:74612249-74612268 None:intergenic 20.0%
!! ATTATTGGTATATAAAACAC+CGG + chr7_3:74612254-74612273 Msa1123640:intron 20.0%
!!! TTTTTTTTTGTGTGTAAATC+AGG + chr7_3:74612293-74612312 Msa1123640:intron 20.0%
!! ACAAATCATAACAAGTAAAT+TGG - chr7_3:74612754-74612773 None:intergenic 20.0%
!! TATGATTGAAATTATAGAGT+AGG + chr7_3:74612788-74612807 Msa1123640:intron 20.0%
!!! AGATTTCTAGGTAATATTAA+CGG - chr7_3:74613139-74613158 None:intergenic 20.0%
!!! CTAATCATGTCTATTTCTAT+AGG + chr7_3:74611473-74611492 Msa1123640:five_prime_UTR 25.0%
! TTGAAAATTCACCATAAAGA+TGG - chr7_3:74611700-74611719 None:intergenic 25.0%
!! TCTTTATGGTGAATTTTCAA+TGG + chr7_3:74611700-74611719 Msa1123640:CDS 25.0%
! AATTCAAGCAAATAGTTCAT+TGG + chr7_3:74611727-74611746 Msa1123640:CDS 25.0%
!!! ATAAGTTACTTGGTTTTTCT+AGG - chr7_3:74611971-74611990 None:intergenic 25.0%
! ATAGTTGGATATAAGTTACT+TGG - chr7_3:74611981-74612000 None:intergenic 25.0%
! ACTTATATCCAACTATTAAG+TGG + chr7_3:74611985-74612004 Msa1123640:intron 25.0%
! CTTATATCCAACTATTAAGT+GGG + chr7_3:74611986-74612005 Msa1123640:intron 25.0%
!! CGTAGTTTTTGTCAAAATTA+CGG - chr7_3:74612053-74612072 None:intergenic 25.0%
! CAAATCTTTCAGTATATGTT+CGG - chr7_3:74612119-74612138 None:intergenic 25.0%
! TTTCAGAAAAGGTTATCAAA+AGG + chr7_3:74612339-74612358 Msa1123640:CDS 25.0%
! TTCAGAAAAGGTTATCAAAA+GGG + chr7_3:74612340-74612359 Msa1123640:CDS 25.0%
! CTATAATTTCAATCATACAG+TGG - chr7_3:74612785-74612804 None:intergenic 25.0%
! ACAAACTAATTGGTAAACTA+AGG + chr7_3:74612823-74612842 Msa1123640:intron 25.0%
!! CATATGTTTTTCTTATGCAA+CGG + chr7_3:74612920-74612939 Msa1123640:intron 25.0%
! AAGTTCTGTTAACACAAAAT+TGG - chr7_3:74613208-74613227 None:intergenic 25.0%
! TTCGTTTCTGTCAAAATTAA+AGG + chr7_3:74613481-74613500 Msa1123640:intron 25.0%
! CAATTACTGTAATATCATCA+TGG - chr7_3:74613672-74613691 None:intergenic 25.0%
!! TCTTGTTGTATAAAGAAGAT+AGG + chr7_3:74613833-74613852 Msa1123640:three_prime_UTR 25.0%
! CAACATAAATTTGTGATTGT+GGG - chr7_3:74613954-74613973 None:intergenic 25.0%
! TCAACATAAATTTGTGATTG+TGG - chr7_3:74613955-74613974 None:intergenic 25.0%
!! ATGTGCATTTAAAATTTGCT+TGG - chr7_3:74614002-74614021 None:intergenic 25.0%
! AGCTAATAAGCTAAAATATG+AGG - chr7_3:74614090-74614109 None:intergenic 25.0%
TGTATAAATGAAGGGAAAAG+TGG - chr7_3:74611310-74611329 None:intergenic 30.0%
AGAACAGAAAAAGTTACCTT+GGG - chr7_3:74611404-74611423 None:intergenic 30.0%
!! CTAAAAAACAAGTTGGTATG+GGG - chr7_3:74611436-74611455 None:intergenic 30.0%
!! GCTAAAAAACAAGTTGGTAT+GGG - chr7_3:74611437-74611456 None:intergenic 30.0%
!! AGCTAAAAAACAAGTTGGTA+TGG - chr7_3:74611438-74611457 None:intergenic 30.0%
TATCTATGACTATATCATGC+TGG + chr7_3:74611597-74611616 Msa1123640:exon 30.0%
ATTGTTATGGTACAAGGATT+TGG + chr7_3:74611670-74611689 Msa1123640:CDS 30.0%
TTGTTATGGTACAAGGATTT+GGG + chr7_3:74611671-74611690 Msa1123640:CDS 30.0%
! ACCTATGAGTTCTGATTATT+TGG + chr7_3:74611775-74611794 Msa1123640:CDS 30.0%
! CCTATGAGTTCTGATTATTT+GGG + chr7_3:74611776-74611795 Msa1123640:CDS 30.0%
ACCTTTATAGGTGTTTATGA+TGG + chr7_3:74611809-74611828 Msa1123640:CDS 30.0%
ACCATCATAAACACCTATAA+AGG - chr7_3:74611813-74611832 None:intergenic 30.0%
ACTCTTGTGATTATGGAAAA+AGG - chr7_3:74612028-74612047 None:intergenic 30.0%
AGTTTGATCTTATAACCTCA+AGG + chr7_3:74612175-74612194 Msa1123640:intron 30.0%
GTTTGATCTTATAACCTCAA+GGG + chr7_3:74612176-74612195 Msa1123640:intron 30.0%
ATTAGCTGCAACAAACTAAT+TGG + chr7_3:74612813-74612832 Msa1123640:intron 30.0%
GCATAAGAAAAACATATGCT+GGG - chr7_3:74612918-74612937 None:intergenic 30.0%
TGCATAAGAAAAACATATGC+TGG - chr7_3:74612919-74612938 None:intergenic 30.0%
AACCTTCAACCAAATGATTA+CGG + chr7_3:74612953-74612972 Msa1123640:intron 30.0%
GAATCGTAGTTAAATGTAGT+TGG + chr7_3:74613028-74613047 Msa1123640:intron 30.0%
CACAAAATTGGAGTAACATA+TGG - chr7_3:74613196-74613215 None:intergenic 30.0%
!!! TTAACAGAACTTGTTTTTGC+AGG + chr7_3:74613216-74613235 Msa1123640:intron 30.0%
TGAAGAAAGCAGAATTTAAC+AGG + chr7_3:74613266-74613285 Msa1123640:CDS 30.0%
GAAGAAAGCAGAATTTAACA+GGG + chr7_3:74613267-74613286 Msa1123640:CDS 30.0%
AAGATGAGAAATTGATCTTC+AGG - chr7_3:74613382-74613401 None:intergenic 30.0%
ACAACTATGATTCATGTAAC+AGG + chr7_3:74613540-74613559 Msa1123640:intron 30.0%
CAACTATGATTCATGTAACA+GGG + chr7_3:74613541-74613560 Msa1123640:intron 30.0%
! GAGCTATTATCAATCAGTTT+TGG - chr7_3:74613709-74613728 None:intergenic 30.0%
! TGATTGATAATAGCTCTCTA+TGG + chr7_3:74613713-74613732 Msa1123640:CDS 30.0%
AGGTTTCTTTCATTCTTTCT+AGG - chr7_3:74613779-74613798 None:intergenic 30.0%
!! TGCTAAAACCAAGTATTGAA+TGG - chr7_3:74613812-74613831 None:intergenic 30.0%
ACATTGTGATCTGATTATGA+AGG + chr7_3:74614018-74614037 Msa1123640:three_prime_UTR 30.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr7_3:74611340-74611359 Msa1123640:five_prime_UTR 35.0%
CCAAAGTAGGTCAATTATAC+CGG + chr7_3:74611353-74611372 Msa1123640:five_prime_UTR 35.0%
CAAAGTAGGTCAATTATACC+GGG + chr7_3:74611354-74611373 Msa1123640:five_prime_UTR 35.0%
CAGAACAGAAAAAGTTACCT+TGG - chr7_3:74611405-74611424 None:intergenic 35.0%
TGCTATTGTTCTTGTCTTCT+TGG - chr7_3:74611540-74611559 None:intergenic 35.0%
!! GGAAAGTTGATGGATTGTTA+TGG + chr7_3:74611657-74611676 Msa1123640:CDS 35.0%
!! TGATGGATTGTTATGGTACA+AGG + chr7_3:74611664-74611683 Msa1123640:CDS 35.0%
GATTTGGGAAACCATCTTTA+TGG + chr7_3:74611686-74611705 Msa1123640:CDS 35.0%
TCAAGCAAATAGTTCATTGG+AGG + chr7_3:74611730-74611749 Msa1123640:CDS 35.0%
CCCAAATAATCAGAACTCAT+AGG - chr7_3:74611779-74611798 None:intergenic 35.0%
ATAGGTGTTTATGATGGTCA+TGG + chr7_3:74611815-74611834 Msa1123640:CDS 35.0%
! TGAGAGCATACTCTTGAAAT+TGG - chr7_3:74611882-74611901 None:intergenic 35.0%
ATCAAACTATTGCCAACTCT+AGG - chr7_3:74612163-74612182 None:intergenic 35.0%
GTTAGTACCGCTGTAATTAT+TGG + chr7_3:74612239-74612258 Msa1123640:intron 35.0%
! GTTTTACAGCTGAAGATCAA+GGG + chr7_3:74612315-74612334 Msa1123640:CDS 35.0%
AGATCAAGGGATTTCAGAAA+AGG + chr7_3:74612328-74612347 Msa1123640:CDS 35.0%
ATGCTGTATATTGCAAATGC+AGG + chr7_3:74612476-74612495 Msa1123640:CDS 35.0%
AAACTGAGAGAGATGATGTT+CGG + chr7_3:74612588-74612607 Msa1123640:CDS 35.0%
ACCACAATCTGTGAATCATA+GGG - chr7_3:74612623-74612642 None:intergenic 35.0%
AACCACAATCTGTGAATCAT+AGG - chr7_3:74612624-74612643 None:intergenic 35.0%
TGGTTATGAAACACTCTGTT+TGG + chr7_3:74612639-74612658 Msa1123640:CDS 35.0%
CATCATACAGGTACAAACTT+GGG + chr7_3:74612673-74612692 Msa1123640:intron 35.0%
AGAAAAACATATGCTGGGAA+AGG - chr7_3:74612913-74612932 None:intergenic 35.0%
! TTTTTCTTATGCAACGGTCA+AGG + chr7_3:74612926-74612945 Msa1123640:intron 35.0%
ACCTTCAACCAAATGATTAC+GGG + chr7_3:74612954-74612973 Msa1123640:intron 35.0%
!! AGTTGGTAGCCTTATAATTG+CGG + chr7_3:74613045-74613064 Msa1123640:intron 35.0%
! GAAAACTCTGATAGTGTTTC+AGG + chr7_3:74613086-74613105 Msa1123640:intron 35.0%
!! ATTGGCTTGAAAAAGGTTTC+AGG - chr7_3:74613319-74613338 None:intergenic 35.0%
!! ACTGAGAATTGGCTTGAAAA+AGG - chr7_3:74613326-74613345 None:intergenic 35.0%
TGAGAAATTGATCTTCAGGT+TGG - chr7_3:74613378-74613397 None:intergenic 35.0%
TTTCTCATCTTTGCTTCTGA+TGG + chr7_3:74613391-74613410 Msa1123640:CDS 35.0%
TCTTTGCTTCTGATGGTTTA+TGG + chr7_3:74613398-74613417 Msa1123640:CDS 35.0%
CTTTGCTTCTGATGGTTTAT+GGG + chr7_3:74613399-74613418 Msa1123640:CDS 35.0%
TAACGATATTCACAGCTACT+TGG - chr7_3:74613438-74613457 None:intergenic 35.0%
! TCACTCCTTGTTCAATCTTT+TGG - chr7_3:74613639-74613658 None:intergenic 35.0%
AAAAGATTGAACAAGGAGTG+AGG + chr7_3:74613638-74613657 Msa1123640:CDS 35.0%
CCATAACCATAAACTACTGT+GGG - chr7_3:74613883-74613902 None:intergenic 35.0%
ACCATAACCATAAACTACTG+TGG - chr7_3:74613884-74613903 None:intergenic 35.0%
TTGAAACTTGAAGAGTCTCA+TGG + chr7_3:74613908-74613927 Msa1123640:three_prime_UTR 35.0%
! CTTGTATTTTCTACCACCAT+TGG + chr7_3:74614064-74614083 Msa1123640:three_prime_UTR 35.0%
AAGCTAAAATATGAGGCCAA+TGG - chr7_3:74614083-74614102 None:intergenic 35.0%
TATTAGCTCAAACTCAAGCA+AGG + chr7_3:74614102-74614121 Msa1123640:three_prime_UTR 35.0%
ATTAGCTCAAACTCAAGCAA+GGG + chr7_3:74614103-74614122 Msa1123640:three_prime_UTR 35.0%
CCGGTATAATTGACCTACTT+TGG - chr7_3:74611356-74611375 None:intergenic 40.0%
! AGTACTAGTTTCTCATCCCA+AGG + chr7_3:74611385-74611404 Msa1123640:five_prime_UTR 40.0%
!! AAAAACAAGTTGGTATGGGG+TGG - chr7_3:74611433-74611452 None:intergenic 40.0%
ATCATGCTGGAAATCAACTG+TGG + chr7_3:74611610-74611629 Msa1123640:CDS 40.0%
GATGTGAAAGGGAAAGTTGA+TGG + chr7_3:74611647-74611666 Msa1123640:CDS 40.0%
TCATAGGTCCTGATTCAAGT+TGG - chr7_3:74611763-74611782 None:intergenic 40.0%
TCTGATTATTTGGGTCCTCA+AGG + chr7_3:74611785-74611804 Msa1123640:CDS 40.0%
ACACCTATAAAGGTTCCTTG+AGG - chr7_3:74611803-74611822 None:intergenic 40.0%
CCAAACACCCACTTAATAGT+TGG - chr7_3:74611996-74612015 None:intergenic 40.0%
CCAACTATTAAGTGGGTGTT+TGG + chr7_3:74611993-74612012 Msa1123640:intron 40.0%
! AGATTTGTTTCCTGTCCATG+AGG + chr7_3:74612132-74612151 Msa1123640:intron 40.0%
GATCTTATAACCTCAAGGGA+CGG + chr7_3:74612180-74612199 Msa1123640:intron 40.0%
ATCTTATAACCTCAAGGGAC+GGG + chr7_3:74612181-74612200 Msa1123640:intron 40.0%
! GGTTTTACAGCTGAAGATCA+AGG + chr7_3:74612314-74612333 Msa1123640:intron 40.0%
! GCATTTTCTGCAACAGATGA+TGG + chr7_3:74612362-74612381 Msa1123640:CDS 40.0%
TGTCTCTTGTGAAGAAGCAA+TGG + chr7_3:74612390-74612409 Msa1123640:CDS 40.0%
ATCTGCTGGTACATGTTGTT+TGG + chr7_3:74612433-74612452 Msa1123640:CDS 40.0%
! TTGGCAGGGATAATTTGCAA+TGG + chr7_3:74612452-74612471 Msa1123640:CDS 40.0%
TCCCTATGATTCACAGATTG+TGG + chr7_3:74612619-74612638 Msa1123640:CDS 40.0%
GCATCATACAGGTACAAACT+TGG + chr7_3:74612672-74612691 Msa1123640:intron 40.0%
TCCCGTAATCATTTGGTTGA+AGG - chr7_3:74612958-74612977 None:intergenic 40.0%
TTTCTGCGACCGCAATTATA+AGG - chr7_3:74613057-74613076 None:intergenic 40.0%
TTGCAGGTTTCAAGATCCAT+AGG + chr7_3:74613232-74613251 Msa1123640:intron 40.0%
CTTCAGATATGCATCACCTA+TGG - chr7_3:74613251-74613270 None:intergenic 40.0%
TCAGGTAGTCTAAACTTCTG+TGG - chr7_3:74613301-74613320 None:intergenic 40.0%
TCATGTAACAGGGAATAGCA+AGG + chr7_3:74613551-74613570 Msa1123640:intron 40.0%
GACCTCCAAAAGATTGAACA+AGG + chr7_3:74613631-74613650 Msa1123640:CDS 40.0%
! CTCCTTGTTCAATCTTTTGG+AGG - chr7_3:74613636-74613655 None:intergenic 40.0%
TCTCCTCTTTCAATCAGAGA+TGG + chr7_3:74613739-74613758 Msa1123640:CDS 40.0%
TATTGAATGGATGCTCAGAG+AGG - chr7_3:74613799-74613818 None:intergenic 40.0%
CTGAGCATCCATTCAATACT+TGG + chr7_3:74613801-74613820 Msa1123640:three_prime_UTR 40.0%
CCCACAGTAGTTTATGGTTA+TGG + chr7_3:74613880-74613899 Msa1123640:three_prime_UTR 40.0%
CTAAAATATGAGGCCAATGG+TGG - chr7_3:74614080-74614099 None:intergenic 40.0%
GTAGGTCAATTATACCGGGA+CGG + chr7_3:74611358-74611377 Msa1123640:five_prime_UTR 45.0%
ATGCTGGAAATCAACTGTGG+AGG + chr7_3:74611613-74611632 Msa1123640:CDS 45.0%
TGCTGGAAATCAACTGTGGA+GGG + chr7_3:74611614-74611633 Msa1123640:CDS 45.0%
!! GTGGTGATGGAGATGTGAAA+GGG + chr7_3:74611636-74611655 Msa1123640:CDS 45.0%
GATCGTAGCCAACTTGAATC+AGG + chr7_3:74611752-74611771 Msa1123640:CDS 45.0%
GGTCCTCAAGGAACCTTTAT+AGG + chr7_3:74611797-74611816 Msa1123640:CDS 45.0%
GGTGTTTATGATGGTCATGG+TGG + chr7_3:74611818-74611837 Msa1123640:CDS 45.0%
TACGGCGACTCTTGTGATTA+TGG - chr7_3:74612035-74612054 None:intergenic 45.0%
AATTTGAATCCCGTCCCTTG+AGG - chr7_3:74612193-74612212 None:intergenic 45.0%
AAACCACAGATAGCATCTGC+TGG + chr7_3:74612419-74612438 Msa1123640:CDS 45.0%
! CTGGTACATGTTGTTTGGCA+GGG + chr7_3:74612438-74612457 Msa1123640:CDS 45.0%
TTGCAAATGCAGGAGACTCA+AGG + chr7_3:74612486-74612505 Msa1123640:CDS 45.0%
TGCAAATGCAGGAGACTCAA+GGG + chr7_3:74612487-74612506 Msa1123640:CDS 45.0%
TGTGTTAGGAAGAGTGAGGA+AGG + chr7_3:74612511-74612530 Msa1123640:CDS 45.0%
GTGTTAGGAAGAGTGAGGAA+GGG + chr7_3:74612512-74612531 Msa1123640:CDS 45.0%
AAGAGTGAGGAAGGGAACAA+GGG + chr7_3:74612520-74612539 Msa1123640:CDS 45.0%
AACCAAATGATTACGGGACG+CGG + chr7_3:74612960-74612979 Msa1123640:intron 45.0%
ACGCGGCAAGGTTTAAATTG+TGG + chr7_3:74612977-74612996 Msa1123640:intron 45.0%
AGTCTAAACTTCTGTGGCAG+AGG - chr7_3:74613295-74613314 None:intergenic 45.0%
GATGGCTCACTACTGAGAAT+TGG - chr7_3:74613337-74613356 None:intergenic 45.0%
GAAACGAAGCTTACATTGCG+TGG - chr7_3:74613469-74613488 None:intergenic 45.0%
TGTAACAGGGAATAGCAAGG+AGG + chr7_3:74613554-74613573 Msa1123640:intron 45.0%
CTGCCATCTCTGATTGAAAG+AGG - chr7_3:74613745-74613764 None:intergenic 45.0%
CTCTTTCAATCAGAGATGGC+AGG + chr7_3:74613743-74613762 Msa1123640:CDS 45.0%
CAGTCTCCCACAGTAGTTTA+TGG + chr7_3:74613874-74613893 Msa1123640:three_prime_UTR 45.0%
GTCAATTATACCGGGACGGA+GGG + chr7_3:74611362-74611381 Msa1123640:five_prime_UTR 50.0%
TGGAAATCAACTGTGGAGGG+TGG + chr7_3:74611617-74611636 Msa1123640:CDS 50.0%
!! GGTGGTGATGGAGATGTGAA+AGG + chr7_3:74611635-74611654 Msa1123640:CDS 50.0%
CAACTCTAGGCAACACCTCA+TGG - chr7_3:74612150-74612169 None:intergenic 50.0%
!! CATGAGGTGTTGCCTAGAGT+TGG + chr7_3:74612148-74612167 Msa1123640:intron 50.0%
GTACCAGCAGATGCTATCTG+TGG - chr7_3:74612425-74612444 None:intergenic 50.0%
! GCTGGTACATGTTGTTTGGC+AGG + chr7_3:74612437-74612456 Msa1123640:CDS 50.0%
GAAGAGTGAGGAAGGGAACA+AGG + chr7_3:74612519-74612538 Msa1123640:CDS 50.0%
CACTCTGTTTGGCGTGTGAA+AGG + chr7_3:74612650-74612669 Msa1123640:CDS 50.0%
!! GCGTGTGAAAGGCATCATAC+AGG + chr7_3:74612661-74612680 Msa1123640:CDS 50.0%
GGTCAATTATACCGGGACGG+AGG + chr7_3:74611361-74611380 Msa1123640:five_prime_UTR 55.0%
AACTAGTACTCCCTCCGTCC+CGG - chr7_3:74611375-74611394 None:intergenic 55.0%
TCAACTGTGGAGGGTGGTGA+TGG + chr7_3:74611623-74611642 Msa1123640:CDS 55.0%
CTAGGCAACACCTCATGGAC+AGG - chr7_3:74612145-74612164 None:intergenic 55.0%
GGAGACTCAAGGGCTGTGTT+AGG + chr7_3:74612497-74612516 Msa1123640:CDS 55.0%
GGGCTGTGTTAGGAAGAGTG+AGG + chr7_3:74612507-74612526 Msa1123640:CDS 55.0%
TGCCGCGTCCCGTAATCATT+TGG - chr7_3:74612965-74612984 None:intergenic 55.0%
AATGATTACGGGACGCGGCA+AGG + chr7_3:74612965-74612984 Msa1123640:intron 55.0%
TAGTCTTCGCAGCTGCGTGC+AGG - chr7_3:74612853-74612872 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 74611271 74614167 74611271 ID=Msa1123640;Name=Msa1123640
chr7_3 mRNA 74611271 74614167 74611271 ID=Msa1123640-mRNA-1;Parent=Msa1123640;Name=Msa1123640-mRNA-1;_AED=0.03;_eAED=0.03;_QI=331|1|1|1|1|1|4|387|370
chr7_3 exon 74611271 74611890 74611271 ID=Msa1123640-mRNA-1:exon:19851;Parent=Msa1123640-mRNA-1
chr7_3 exon 74612315 74612682 74612315 ID=Msa1123640-mRNA-1:exon:19852;Parent=Msa1123640-mRNA-1
chr7_3 exon 74613238 74613474 74613238 ID=Msa1123640-mRNA-1:exon:19853;Parent=Msa1123640-mRNA-1
chr7_3 exon 74613562 74614167 74613562 ID=Msa1123640-mRNA-1:exon:19854;Parent=Msa1123640-mRNA-1
chr7_3 five_prime_UTR 74611271 74611601 74611271 ID=Msa1123640-mRNA-1:five_prime_utr;Parent=Msa1123640-mRNA-1
chr7_3 CDS 74611602 74611890 74611602 ID=Msa1123640-mRNA-1:cds;Parent=Msa1123640-mRNA-1
chr7_3 CDS 74612315 74612682 74612315 ID=Msa1123640-mRNA-1:cds;Parent=Msa1123640-mRNA-1
chr7_3 CDS 74613238 74613474 74613238 ID=Msa1123640-mRNA-1:cds;Parent=Msa1123640-mRNA-1
chr7_3 CDS 74613562 74613780 74613562 ID=Msa1123640-mRNA-1:cds;Parent=Msa1123640-mRNA-1
chr7_3 three_prime_UTR 74613781 74614167 74613781 ID=Msa1123640-mRNA-1:three_prime_utr;Parent=Msa1123640-mRNA-1
Gene Sequence

>Msa1123640

ATGACTATATCATGCTGGAAATCAACTGTGGAGGGTGGTGATGGAGATGTGAAAGGGAAAGTTGATGGATTGTTATGGTACAAGGATTTGGGAAACCATCTTTATGGTGAATTTTCAATGGCTGTAATTCAAGCAAATAGTTCATTGGAGGATCGTAGCCAACTTGAATCAGGACCTATGAGTTCTGATTATTTGGGTCCTCAAGGAACCTTTATAGGTGTTTATGATGGTCATGGTGGAACTGCAGCTGCTCAGTTTGTTAATGACAATCTATTCTCCAATTTCAAGAGTTTTACAGCTGAAGATCAAGGGATTTCAGAAAAGGTTATCAAAAGGGCATTTTCTGCAACAGATGATGGTTTTCTGTCTCTTGTGAAGAAGCAATGGCAAAGCAAACCACAGATAGCATCTGCTGGTACATGTTGTTTGGCAGGGATAATTTGCAATGGTATGCTGTATATTGCAAATGCAGGAGACTCAAGGGCTGTGTTAGGAAGAGTGAGGAAGGGAACAAGGGAAACATTAGCTGTTCAGTTATCTACTGAACACAATGTTAATATAGAAACTGAGAGAGATGATGTTCGGTCAAAGCATCCCTATGATTCACAGATTGTGGTTATGAAACACTCTGTTTGGCGTGTGAAAGGCATCATACAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAAGCAGAATTTAACAGGGAGCCTCTGCCACAGAAGTTTAGACTACCTGAAACCTTTTTCAAGCCAATTCTCAGTAGTGAGCCATCAATATCAATTCATAAAATCCAACCTGAAGATCAATTTCTCATCTTTGCTTCTGATGGTTTATGGGAGCATCTTAGCAACCAAGTAGCTGTGAATATCGTTAGCAACAATCCACGCAATGGAATAGCAAGGAGGCTTGTGAAAGCAGCACTTAAAGAAGCAGCGAAGAAGCGAGAAATAAGATTATCAGACCTCCAAAAGATTGAACAAGGAGTGAGGAGACACTTCCATGATGATATTACAGTAATTGTTGTATATCTAAATCCAAAACTGATTGATAATAGCTCTCTATGGAGTTCTCCTCTTTCAATCAGAGATGGCAGGCATGTCAATTCCTAG
Protein sequence

>Msa1123640

MTISCWKSTVEGGDGDVKGKVDGLLWYKDLGNHLYGEFSMAVIQANSSLEDRSQLESGPMSSDYLGPQGTFIGVYDGHGGTAAAQFVNDNLFSNFKSFTAEDQGISEKVIKRAFSATDDGFLSLVKKQWQSKPQIASAGTCCLAGIICNGMLYIANAGDSRAVLGRVRKGTRETLAVQLSTEHNVNIETERDDVRSKHPYDSQIVVMKHSVWRVKGIIQVSRSIGDAYLKKAEFNREPLPQKFRLPETFFKPILSSEPSISIHKIQPEDQFLIFASDGLWEHLSNQVAVNIVSNNPRNGIARRLVKAALKEAAKKREIRLSDLQKIEQGVRRHFHDDITVIVVYLNPKLIDNSSLWSSPLSIRDGRHVNS*