AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1078410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078410 MtrunA17_Chr7g0263281 97.568 370 9 0 1 370 1 370 0.0 750
Msa1078410 MtrunA17_Chr1g0181901 70.720 403 84 3 1 369 1 403 0.0 564
Msa1078410 MtrunA17_Chr1g0213351 66.954 348 111 2 5 348 13 360 8.71e-174 488
Msa1078410 MtrunA17_Chr7g0250061 64.754 366 125 2 4 365 6 371 2.12e-168 475
Msa1078410 MtrunA17_Chr1g0211251 62.842 366 132 2 4 365 11 376 8.19e-166 469
Msa1078410 MtrunA17_Chr8g0371321 62.931 348 128 1 17 363 25 372 3.33e-164 464
Msa1078410 MtrunA17_Chr2g0294291 56.438 365 145 3 5 363 12 368 3.20e-149 426
Msa1078410 MtrunA17_Chr1g0175381 54.268 328 141 3 22 349 38 356 4.16e-127 370
Msa1078410 MtrunA17_Chr1g0207571 54.079 331 142 2 18 346 16 338 1.46e-123 361
Msa1078410 MtrunA17_Chr3g0089711 46.154 325 158 6 29 346 33 347 1.80e-96 291
Msa1078410 MtrunA17_Chr3g0089721 46.154 325 158 6 29 346 33 347 3.22e-96 291
Msa1078410 MtrunA17_Chr7g0256751 46.462 325 157 6 29 346 34 348 6.50e-91 280
Msa1078410 MtrunA17_Chr7g0256771 45.221 272 138 4 29 298 35 297 1.93e-75 236
Msa1078410 MtrunA17_Chr3g0089691 45.318 267 126 5 86 346 9 261 2.23e-72 228
Msa1078410 MtrunA17_Chr4g0063111 35.952 331 193 6 22 348 34 349 1.61e-61 206
Msa1078410 MtrunA17_Chr4g0063051 33.618 351 188 12 3 348 1 311 1.40e-46 162
Msa1078410 MtrunA17_Chr2g0295991 31.962 316 169 7 71 345 166 476 2.67e-43 156
Msa1078410 MtrunA17_Chr7g0238501 29.530 298 181 6 71 349 263 550 2.14e-39 147
Msa1078410 MtrunA17_Chr4g0067301 29.483 329 173 7 71 345 164 487 1.13e-38 144
Msa1078410 MtrunA17_Chr4g0039061 30.435 299 176 7 70 349 201 486 2.18e-37 140
Msa1078410 MtrunA17_Chr7g0256761 41.117 197 93 5 159 350 7 185 5.29e-36 130
Msa1078410 MtrunA17_Chr4g0031521 30.466 279 152 6 108 349 426 699 2.07e-34 134
Msa1078410 MtrunA17_Chr1g0193691 29.236 301 148 5 109 349 592 887 1.92e-33 131
Msa1078410 MtrunA17_Chr4g0054811 29.739 306 156 6 102 353 475 775 1.85e-32 129
Msa1078410 MtrunA17_Chr3g0105371 30.686 277 136 7 70 345 117 338 5.94e-32 123
Msa1078410 MtrunA17_Chr5g0430481 34.529 223 104 6 70 291 153 334 1.26e-31 122
Msa1078410 MtrunA17_Chr3g0105351 29.964 277 138 7 70 345 93 314 1.96e-30 118
Msa1078410 MtrunA17_Chr1g0212961 28.710 310 148 9 47 353 106 345 1.35e-26 108
Msa1078410 MtrunA17_Chr1g0150451 30.627 271 138 9 47 313 88 312 3.91e-24 101
Msa1078410 MtrunA17_Chr4g0050381 30.877 285 144 12 35 314 30 266 4.13e-24 100
Msa1078410 MtrunA17_Chr2g0317021 30.576 278 128 10 71 345 117 332 5.49e-24 100
Msa1078410 MtrunA17_Chr5g0426141 31.034 319 144 13 31 343 31 279 7.80e-24 99.8
Msa1078410 MtrunA17_Chr3g0126511 30.870 230 112 6 66 291 120 306 8.69e-24 100
Msa1078410 MtrunA17_Chr3g0136711 29.000 300 144 11 47 343 45 278 1.44e-23 99.4
Msa1078410 MtrunA17_Chr5g0407161 29.371 286 129 9 71 346 124 346 2.39e-23 100
Msa1078410 MtrunA17_Chr4g0070871 29.297 256 122 7 54 291 231 445 1.01e-21 96.7
Msa1078410 MtrunA17_Chr2g0279151 29.078 282 137 9 64 343 58 278 1.25e-21 93.6
Msa1078410 MtrunA17_Chr4g0062951 32.065 184 115 6 105 279 1 183 2.05e-21 90.5
Msa1078410 MtrunA17_Chr3g0115851 28.797 316 155 13 31 343 31 279 8.81e-21 91.3
Msa1078410 MtrunA17_Chr8g0360351 27.187 320 164 12 30 346 29 282 1.47e-20 90.5
Msa1078410 MtrunA17_Chr2g0293811 29.825 285 141 9 70 346 99 332 1.89e-20 91.7
Msa1078410 MtrunA17_Chr1g0171571 29.537 281 140 10 72 347 419 646 4.66e-20 92.0
Msa1078410 MtrunA17_Chr3g0144111 28.223 287 116 9 69 347 25 229 5.79e-20 88.6
Msa1078410 MtrunA17_Chr3g0138281 28.622 283 141 11 66 343 117 343 2.68e-19 88.6
Msa1078410 MtrunA17_Chr4g0065141 28.777 278 142 9 70 343 123 348 3.23e-19 88.2
Msa1078410 MtrunA17_Chr3g0135961 28.197 305 160 12 60 345 275 539 4.21e-19 89.0
Msa1078410 MtrunA17_Chr1g0158781 27.726 321 176 11 35 349 113 383 1.37e-18 86.3
Msa1078410 MtrunA17_Chr5g0435721 27.586 232 129 5 68 292 220 419 7.81e-18 84.7
Msa1078410 MtrunA17_Chr3g0112291 24.917 301 152 11 71 345 123 375 8.41e-18 84.0
Msa1078410 MtrunA17_Chr4g0051661 29.435 248 116 11 71 308 183 381 1.51e-17 83.6
Msa1078410 MtrunA17_Chr1g0150781 27.419 310 149 12 67 348 285 546 2.47e-17 83.6
Msa1078410 MtrunA17_Chr7g0223641 30.493 223 110 7 135 345 7 196 2.91e-17 79.7
Msa1078410 MtrunA17_Chr1g0194191 26.573 286 149 11 70 346 117 350 1.15e-16 80.9
Msa1078410 MtrunA17_Chr3g0136811 25.614 285 138 10 52 292 33 287 2.40e-16 79.7
Msa1078410 MtrunA17_Chr1g0150071 26.592 267 122 10 70 292 51 287 9.14e-16 77.8
Msa1078410 MtrunA17_Chr2g0295401 28.873 284 148 11 71 326 92 349 1.30e-15 77.4
Msa1078410 MtrunA17_Chr7g0221691 32.075 159 90 5 152 309 245 386 7.99e-15 75.5
Msa1078410 MtrunA17_Chr4g0004971 26.154 325 160 14 63 351 69 349 1.30e-13 71.2
Msa1078410 MtrunA17_Chr8g0342431 31.928 166 83 5 152 310 210 352 2.34e-13 70.9
Msa1078410 MtrunA17_Chr3g0127091 26.482 253 138 10 70 297 88 317 1.07e-12 68.9
Msa1078410 MtrunA17_Chr5g0396731 24.399 291 165 7 71 349 107 354 1.25e-12 68.2
Msa1078410 MtrunA17_Chr1g0151781 27.170 265 136 10 56 292 53 288 3.03e-12 67.0
Msa1078410 MtrunA17_Chr4g0067711 30.000 200 104 8 138 326 174 348 7.50e-12 65.9
Msa1078410 MtrunA17_Chr1g0192421 27.465 284 152 13 71 326 89 346 7.83e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078410 AT3G12620.2 66.304 368 121 1 1 365 10 377 0.0 509
Msa1078410 AT3G12620.1 66.304 368 121 1 1 365 10 377 0.0 509
Msa1078410 AT3G55050.1 64.481 366 121 2 5 365 13 374 9.85e-177 496
Msa1078410 AT3G55050.2 64.481 366 121 2 5 365 13 374 9.85e-177 496
Msa1078410 AT3G51370.1 65.706 347 117 1 19 365 27 371 4.42e-173 487
Msa1078410 AT3G51370.3 65.706 347 117 1 19 365 27 371 4.42e-173 487
Msa1078410 AT5G66080.1 64.571 350 122 2 18 365 28 377 7.77e-168 474
Msa1078410 AT4G38520.2 61.891 349 132 1 16 363 26 374 1.02e-164 466
Msa1078410 AT4G38520.1 61.891 349 132 1 16 363 26 374 1.02e-164 466
Msa1078410 AT5G02760.1 61.995 371 137 3 1 370 1 368 1.50e-160 455
Msa1078410 AT3G17090.1 58.359 329 125 4 24 350 45 363 2.17e-135 392
Msa1078410 AT3G51370.2 63.768 276 98 1 90 365 13 286 1.64e-130 376
Msa1078410 AT5G66080.2 65.056 269 93 1 98 365 5 273 6.64e-127 366
Msa1078410 AT4G33920.1 51.862 349 149 3 22 359 20 360 3.62e-124 363
Msa1078410 AT5G06750.3 49.713 348 164 2 24 368 43 382 3.94e-119 350
Msa1078410 AT5G06750.1 49.713 348 164 2 24 368 43 382 3.94e-119 350
Msa1078410 AT3G17090.2 55.797 276 110 4 24 297 45 310 2.08e-106 315
Msa1078410 AT4G33920.2 53.480 273 116 2 98 359 5 277 3.07e-98 294
Msa1078410 AT5G06750.2 51.661 271 128 1 101 368 30 300 2.98e-93 281
Msa1078410 AT4G33920.3 54.656 247 101 2 124 359 1 247 6.49e-91 274
Msa1078410 AT3G16560.1 31.210 314 169 7 71 345 175 480 1.70e-42 155
Msa1078410 AT3G16560.4 31.210 314 169 7 71 345 175 480 1.70e-42 155
Msa1078410 AT3G16560.2 31.210 314 169 7 71 345 175 480 1.70e-42 155
Msa1078410 AT1G07160.1 34.520 281 129 7 67 345 149 376 5.50e-38 140
Msa1078410 AT5G02400.1 31.884 276 149 5 108 349 399 669 3.97e-37 142
Msa1078410 AT2G46920.3 28.713 303 150 5 108 349 542 839 2.84e-35 137
Msa1078410 AT2G46920.1 28.713 303 150 5 108 349 542 839 2.84e-35 137
Msa1078410 AT2G46920.2 28.713 303 150 5 108 349 542 839 2.84e-35 137
Msa1078410 AT2G46920.4 28.713 303 150 5 108 349 542 839 2.84e-35 137
Msa1078410 AT3G09400.1 30.037 273 151 6 108 349 382 645 8.84e-35 135
Msa1078410 AT1G07630.1 29.032 279 156 5 108 349 384 657 1.49e-34 135
Msa1078410 AT2G28890.1 29.474 285 158 6 108 355 376 654 1.86e-34 134
Msa1078410 AT2G40180.1 31.683 303 136 10 58 345 139 385 9.43e-34 129
Msa1078410 AT3G16560.3 30.742 283 151 7 71 315 175 450 2.15e-33 129
Msa1078410 AT2G35350.1 28.621 290 156 5 102 345 486 770 8.24e-33 130
Msa1078410 AT2G30020.1 32.975 279 129 9 70 345 169 392 6.01e-30 119
Msa1078410 AT1G67820.2 34.222 225 105 5 70 292 114 297 1.51e-28 115
Msa1078410 AT1G67820.1 34.222 225 105 5 70 292 150 333 2.17e-28 115
Msa1078410 AT3G09400.2 28.870 239 130 6 108 315 382 611 1.61e-25 108
Msa1078410 AT2G33700.1 32.877 292 117 12 69 347 121 346 1.68e-25 106
Msa1078410 AT4G31750.1 30.147 272 139 9 47 313 44 269 8.16e-25 103
Msa1078410 AT4G31750.3 30.147 272 139 9 47 313 44 269 8.16e-25 103
Msa1078410 AT4G31750.2 30.147 272 139 9 47 313 44 269 9.10e-25 103
Msa1078410 AT3G51470.2 28.763 299 137 11 62 348 52 286 3.36e-24 101
Msa1078410 AT3G51470.1 28.763 299 137 11 62 348 96 330 6.73e-24 101
Msa1078410 AT1G43900.1 32.526 289 121 11 62 343 145 366 1.15e-23 101
Msa1078410 AT5G10740.1 30.556 288 146 11 31 313 30 268 1.15e-23 100
Msa1078410 AT5G10740.2 30.556 288 146 11 31 313 30 268 1.15e-23 100
Msa1078410 AT1G78200.1 29.393 313 152 12 35 343 33 280 7.78e-23 97.4
Msa1078410 AT1G78200.3 29.393 313 152 12 35 343 33 280 7.78e-23 97.4
Msa1078410 AT1G78200.2 29.393 313 152 12 35 343 33 280 7.78e-23 97.4
Msa1078410 AT5G53140.1 26.756 299 146 9 71 359 132 367 3.56e-22 97.4
Msa1078410 AT5G53140.2 26.756 299 146 9 71 359 132 367 3.56e-22 97.4
Msa1078410 AT1G78200.5 29.021 286 139 10 62 343 10 235 5.77e-22 94.0
Msa1078410 AT1G78200.4 29.021 286 139 10 62 343 10 235 5.77e-22 94.0
Msa1078410 AT2G25620.1 28.165 316 165 13 43 348 96 359 7.56e-22 96.3
Msa1078410 AT2G25620.2 28.165 316 165 13 43 348 96 359 7.56e-22 96.3
Msa1078410 AT4G28400.3 30.315 254 129 9 66 314 40 250 1.50e-21 93.2
Msa1078410 AT5G24940.1 29.825 285 146 11 31 310 30 265 3.04e-21 95.1
Msa1078410 AT4G28400.1 29.371 286 133 10 66 346 62 283 3.23e-21 92.8
Msa1078410 AT2G20630.1 29.242 277 129 10 71 343 63 276 8.87e-21 91.7
Msa1078410 AT2G20630.2 28.986 276 129 10 71 342 63 275 4.11e-20 89.7
Msa1078410 AT1G07430.1 28.696 230 124 5 71 292 157 354 1.07e-19 90.5
Msa1078410 AT1G34750.2 28.526 312 152 12 38 345 37 281 2.00e-19 87.8
Msa1078410 AT1G34750.1 28.526 312 152 12 38 345 37 281 2.00e-19 87.8
Msa1078410 AT1G34750.3 28.526 312 152 12 38 345 37 281 2.00e-19 87.8
Msa1078410 AT2G29380.1 28.571 301 162 10 57 345 101 360 3.09e-19 88.6
Msa1078410 AT1G22280.3 28.349 321 160 13 29 343 28 284 3.77e-19 87.0
Msa1078410 AT3G17250.1 27.358 318 149 12 62 359 142 397 4.18e-19 88.6
Msa1078410 AT1G48040.1 30.034 293 150 9 39 314 81 335 4.96e-19 88.2
Msa1078410 AT4G08260.1 27.698 278 112 10 70 345 18 208 7.06e-19 84.7
Msa1078410 AT4G26080.1 25.890 309 179 9 54 348 153 425 1.79e-18 86.7
Msa1078410 AT1G22280.1 28.481 316 160 12 29 343 28 278 1.96e-18 84.7
Msa1078410 AT3G62260.3 30.242 248 134 9 71 309 27 244 2.59e-18 84.7
Msa1078410 AT3G15260.2 29.603 277 128 11 71 343 73 286 2.69e-18 84.7
Msa1078410 AT3G15260.1 29.603 277 128 11 71 343 73 286 2.69e-18 84.7
Msa1078410 AT2G40860.4 28.470 281 144 8 71 347 325 552 3.46e-18 86.7
Msa1078410 AT2G40860.1 28.470 281 144 8 71 347 423 650 4.00e-18 86.3
Msa1078410 AT5G51760.2 27.083 240 124 8 71 291 114 321 5.15e-18 85.1
Msa1078410 AT5G51760.1 27.083 240 124 8 71 291 144 351 6.85e-18 85.1
Msa1078410 AT3G62260.1 30.242 248 134 9 71 309 116 333 1.04e-17 84.3
Msa1078410 AT2G34740.1 28.938 273 148 10 44 314 96 324 1.10e-17 83.6
Msa1078410 AT3G62260.2 30.242 248 134 9 71 309 117 334 1.11e-17 84.0
Msa1078410 AT3G16800.2 28.428 299 153 12 70 347 92 350 2.23e-17 82.8
Msa1078410 AT3G16800.1 28.428 299 153 12 70 347 92 350 2.23e-17 82.8
Msa1078410 AT3G16800.3 28.428 299 153 12 70 347 92 350 2.23e-17 82.8
Msa1078410 AT2G25070.1 25.887 282 141 8 52 292 33 287 2.25e-17 82.8
Msa1078410 AT2G25070.2 25.887 282 141 8 52 292 33 287 2.25e-17 82.8
Msa1078410 AT5G59220.1 28.384 229 123 6 71 292 148 342 7.59e-17 82.0
Msa1078410 AT3G16800.4 29.832 238 117 9 122 347 56 255 9.69e-17 79.7
Msa1078410 AT3G16800.6 29.832 238 117 9 122 347 56 255 9.69e-17 79.7
Msa1078410 AT2G40860.2 28.226 248 137 7 71 311 423 636 2.12e-16 81.3
Msa1078410 AT1G72770.4 27.308 260 121 5 60 291 227 446 2.98e-16 80.5
Msa1078410 AT1G72770.1 27.308 260 121 5 60 291 227 446 2.98e-16 80.5
Msa1078410 AT1G72770.3 27.308 260 121 5 60 291 227 446 2.98e-16 80.5
Msa1078410 AT2G34740.2 29.289 239 124 9 44 281 110 304 3.56e-16 79.0
Msa1078410 AT2G34740.3 29.289 239 124 9 44 281 92 286 4.53e-16 78.6
Msa1078410 AT1G17550.1 26.603 312 151 12 71 348 237 504 5.10e-16 79.7
Msa1078410 AT1G17550.2 26.603 312 151 12 71 348 237 504 5.10e-16 79.7
Msa1078410 AT1G18030.1 28.736 261 129 9 72 311 110 334 1.90e-15 77.0
Msa1078410 AT5G27930.1 28.000 300 152 14 71 344 92 353 5.17e-15 76.3
Msa1078410 AT5G27930.2 28.000 300 152 14 71 344 92 353 5.17e-15 76.3
Msa1078410 AT3G11410.1 24.314 255 134 7 71 308 137 349 6.76e-15 75.9
Msa1078410 AT3G05640.2 27.957 279 152 13 71 326 93 345 4.35e-14 73.2
Msa1078410 AT3G05640.1 27.957 279 152 13 71 326 93 345 4.35e-14 73.2
Msa1078410 AT3G05640.3 27.957 279 152 13 71 326 93 345 4.35e-14 73.2
Msa1078410 AT1G34750.4 27.823 248 128 9 38 281 37 237 4.45e-14 71.6
Msa1078410 AT5G26010.1 26.629 353 200 13 11 348 19 327 6.86e-14 72.4
Msa1078410 AT4G32950.1 26.014 296 167 12 64 348 65 319 1.50e-12 68.2

Find 117 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTATGAGTTCTGATTATT+TGG 0.094977 7_2:-77359697 Msa1078410:CDS
TGCTATTGTTCTTGTCTTCT+TGG 0.118706 7_2:+77359935 None:intergenic
TCTTTGCTTCTGATGGTTTA+TGG 0.141459 7_2:-77358084 Msa1078410:CDS
TCACTCCTTGTTCAATCTTT+TGG 0.144007 7_2:+77357846 None:intergenic
CAGTCTCCCACAGTAGTTTA+TGG 0.181885 7_2:-77357608 Msa1078410:three_prime_UTR
AATAGATAAGAGAAGGATTT+TGG 0.185679 7_2:+77360298 None:intergenic
GATTTGGGAAACCATCTTTA+TGG 0.196034 7_2:-77359786 Msa1078410:CDS
GGTCCTCAAGGAACCTTTAT+AGG 0.223798 7_2:-77359675 Msa1078410:CDS
CTTTGCTTCTGATGGTTTAT+GGG 0.228766 7_2:-77358083 Msa1078410:CDS
CCCACAGTAGTTTATGGTTA+TGG 0.252793 7_2:-77357602 Msa1078410:three_prime_UTR
TGAGAGCATACTCTTGAAAT+TGG 0.253266 7_2:+77359593 None:intergenic
CTTTCATTCTTTCTAGGAAT+TGG 0.262494 7_2:+77357712 None:intergenic
AGGTTTCTTTCATTCTTTCT+AGG 0.264590 7_2:+77357706 None:intergenic
ACTGAGAATTGGCTTGAAAA+AGG 0.264897 7_2:+77358159 None:intergenic
CTAAGTGTGTTCCTTTAATA+TGG 0.271025 7_2:-77360209 Msa1078410:five_prime_UTR
CAGCTATTATCAATCAGTTT+TGG 0.276941 7_2:+77357776 None:intergenic
ATTGTTATGGTACAAGGATT+TGG 0.289189 7_2:-77359802 Msa1078410:CDS
TCAGAGGTGTGCCATATTAA+AGG 0.291940 7_2:+77360198 None:intergenic
TGAAGAAAGCAGAATTTAAC+AGG 0.297447 7_2:-77358216 Msa1078410:CDS
CTGAGCATCCATTCAATACT+TGG 0.302446 7_2:-77357681 Msa1078410:three_prime_UTR
TTGTTATGGTACAAGGATTT+GGG 0.311993 7_2:-77359801 Msa1078410:CDS
AAGATGAGAAATTGATCTTC+AGG 0.326898 7_2:+77358103 None:intergenic
TATAGGTATATATATAGATT+TGG 0.334918 7_2:-77359982 Msa1078410:intron
ACCATCATAAACACCTATAA+AGG 0.367844 7_2:+77359662 None:intergenic
AACCACAATCTGTGAATCAT+AGG 0.369310 7_2:+77358851 None:intergenic
CTTAGCTGTAAAAGCACATA+TGG 0.371280 7_2:+77360227 None:intergenic
CCTATGAGTTCTGATTATTT+GGG 0.385684 7_2:-77359696 Msa1078410:CDS
CAACATAAATTTGTGATTGT+GGG 0.387941 7_2:+77357531 None:intergenic
GATGGCTCACTACTGAGAAT+TGG 0.390286 7_2:+77358148 None:intergenic
TTTCTCATCTTTGCTTCTGA+TGG 0.394754 7_2:-77358091 Msa1078410:CDS
TGATTGATAATAGCTGTCTA+TGG 0.405346 7_2:-77357769 Msa1078410:CDS
ATCTGCTGGTACATGTTGTT+TGG 0.408579 7_2:-77359039 Msa1078410:CDS
TTGAAAATTCACCATAAAGA+TGG 0.408650 7_2:+77359775 None:intergenic
AATTCAAGCAAATAGTTCAT+TGG 0.412793 7_2:-77359745 Msa1078410:CDS
TCTTGTTGTATAAAGAAGAT+AGG 0.421011 7_2:-77357649 Msa1078410:three_prime_UTR
GAAGAGTGAGGAAGGGAACA+AGG 0.421093 7_2:-77358953 Msa1078410:CDS
TAACGATATTCACGGCTACT+TGG 0.428334 7_2:+77358047 None:intergenic
TTTCAGAAAAGGTTATCAAA+AGG 0.431288 7_2:-77359133 Msa1078410:CDS
GGAGACTCAAGGGCTGTGTT+AGG 0.432476 7_2:-77358975 Msa1078410:CDS
GGAAAGTTGATGGATTGTTA+TGG 0.432672 7_2:-77359815 Msa1078410:CDS
GATCGTAGCCAACTTGAATC+AGG 0.435753 7_2:-77359720 Msa1078410:CDS
AAGCACATATGGACTCAATA+TGG 0.440468 7_2:+77360238 None:intergenic
CTTCAGATATGCATCACCTA+TGG 0.450543 7_2:+77358234 None:intergenic
TCAACATAAATTTGTGATTG+TGG 0.453642 7_2:+77357530 None:intergenic
TGATGGATTGTTATGGTACA+AGG 0.456025 7_2:-77359808 Msa1078410:CDS
GCTGGTACATGTTGTTTGGC+AGG 0.456613 7_2:-77359035 Msa1078410:CDS
TTCAGAAAAGGTTATCAAAA+GGG 0.466769 7_2:-77359132 Msa1078410:CDS
AGATCAAGGGATTTCAGAAA+AGG 0.471446 7_2:-77359144 Msa1078410:CDS
CACTCTGTTTGGCGTGTGAA+AGG 0.474473 7_2:-77358822 Msa1078410:CDS
CCCAAATAATCAGAACTCAT+AGG 0.475948 7_2:+77359696 None:intergenic
TGTGTTAGGAAGAGTGAGGA+AGG 0.477652 7_2:-77358961 Msa1078410:CDS
AGCTAATAAGCTAAAATATG+AGG 0.478377 7_2:+77357386 None:intergenic
CTAAAATATGAGGCCAATAG+TGG 0.480264 7_2:+77357396 None:intergenic
TGCTAAAACCAAGTATTGAA+TGG 0.481415 7_2:+77357673 None:intergenic
AAGATACAAACTAACGTTCA+AGG 0.484502 7_2:-77360157 Msa1078410:five_prime_UTR
TGGTTATGAAACACTCTGTT+TGG 0.490832 7_2:-77358833 Msa1078410:CDS
AAGAGTGAGGAAGGGAACAA+GGG 0.493346 7_2:-77358952 Msa1078410:CDS
TGAGAAATTGATCTTCAGGT+TGG 0.496104 7_2:+77358107 None:intergenic
ATGTGCATTTAAAATTTGCT+TGG 0.501597 7_2:+77357483 None:intergenic
GATGTGAAAGGGAAAGTTGA+TGG 0.502197 7_2:-77359825 Msa1078410:CDS
ACCTTTATAGGTGTTTATGA+TGG 0.502488 7_2:-77359663 Msa1078410:CDS
TTGCAGGTTTCAAGATCCAT+AGG 0.507189 7_2:-77358250 Msa1078410:intron
GGTGGTGATGGAGATGTGAA+AGG 0.507401 7_2:-77359837 Msa1078410:CDS
TGGACTCAATATGGCAGAGT+TGG 0.517378 7_2:+77360247 None:intergenic
CTGCCATCTCTGATTGAAAG+AGG 0.518398 7_2:+77357740 None:intergenic
GAAACGAAGCTTACATTGCG+TGG 0.519390 7_2:+77358016 None:intergenic
CTCTTTCAATCAGAGATGGC+AGG 0.520547 7_2:-77357739 Msa1078410:CDS
TCAACTGTGGAGGGTGGTGA+TGG 0.527360 7_2:-77359849 Msa1078410:CDS
TCCCTATGATTCACAGATTG+TGG 0.527683 7_2:-77358853 Msa1078410:CDS
ATAGGTGTTTATGATGGTCA+TGG 0.527745 7_2:-77359657 Msa1078410:CDS
AAACTGAGAGAGATGATGTT+CGG 0.531123 7_2:-77358884 Msa1078410:CDS
CTGGTACATGTTGTTTGGCA+GGG 0.535327 7_2:-77359034 Msa1078410:CDS
ATGAAACAATAGATAAGAGA+AGG 0.535359 7_2:+77360291 None:intergenic
ATTGTTGCTAACGATATTCA+CGG 0.536647 7_2:+77358039 None:intergenic
TCAAGCAAATAGTTCATTGG+AGG 0.537174 7_2:-77359742 Msa1078410:CDS
TATCTATGACTATATCATGC+TGG 0.539611 7_2:-77359875 Msa1078410:exon
TTGAAACTTGAAGAGTCTCA+TGG 0.548045 7_2:-77357574 Msa1078410:three_prime_UTR
TCTGATTATTTGGGTCCTCA+AGG 0.548992 7_2:-77359687 Msa1078410:CDS
GCGTGTGAAAGGCATCATAC+AGG 0.551663 7_2:-77358811 Msa1078410:intron
GTTAGTTTGTATCTTGCATG+TGG 0.552758 7_2:+77360165 None:intergenic
TGTTTGTGATCTGATTATGA+AGG 0.558005 7_2:-77357455 Msa1078410:three_prime_UTR
TGTCTCTTGTGAAGAAGCAA+TGG 0.558482 7_2:-77359082 Msa1078410:CDS
AGTCTAAACTTCTGTGGCAG+AGG 0.558697 7_2:+77358190 None:intergenic
GTGGTGATGGAGATGTGAAA+GGG 0.558872 7_2:-77359836 Msa1078410:CDS
TTGCAAATGCAGGAGACTCA+AGG 0.563487 7_2:-77358986 Msa1078410:CDS
TCTCCTCTTTCAATCAGAGA+TGG 0.566031 7_2:-77357743 Msa1078410:CDS
TCATAGGTCCTGATTCAAGT+TGG 0.579655 7_2:+77359712 None:intergenic
CAGAGAAAACGAAAGCGTGT+TGG 0.579973 7_2:+77360125 None:intergenic
CAATTACTGTAATATCATCA+TGG 0.580958 7_2:+77357813 None:intergenic
ACCACAATCTGTGAATCATA+GGG 0.581742 7_2:+77358852 None:intergenic
TGCAAATGCAGGAGACTCAA+GGG 0.586962 7_2:-77358985 Msa1078410:CDS
TATTAGCTCAAACTCAAGCA+AGG 0.587242 7_2:-77357371 Msa1078410:three_prime_UTR
CCATAACCATAAACTACTGT+GGG 0.588499 7_2:+77357602 None:intergenic
TGCTGGAAATCAACTGTGGA+GGG 0.596448 7_2:-77359858 Msa1078410:CDS
GCTACTAGTTTCTCATCCCA+AGG 0.598922 7_2:-77360087 Msa1078410:intron
TCAGGTAGTCTAAACTTCTG+TGG 0.603011 7_2:+77358184 None:intergenic
TTTAATATGGCACACCTCTG+AGG 0.608672 7_2:-77360196 Msa1078410:five_prime_UTR
ATGCTGTATATTGCAAATGC+AGG 0.610667 7_2:-77358996 Msa1078410:CDS
AAACCACAGATAGCATCTGC+TGG 0.614223 7_2:-77359053 Msa1078410:CDS
ACCATAACCATAAACTACTG+TGG 0.618055 7_2:+77357601 None:intergenic
GACCTCCAAAAGATTGAACA+AGG 0.625989 7_2:-77357851 Msa1078410:CDS
TTGGCAGGGATAATTTGCAA+TGG 0.628153 7_2:-77359020 Msa1078410:CDS
AAAAGATTGAACAAGGAGTG+AGG 0.629700 7_2:-77357844 Msa1078410:CDS
ATTAGCTCAAACTCAAGCAA+GGG 0.643945 7_2:-77357370 Msa1078410:three_prime_UTR
ATGCTGGAAATCAACTGTGG+AGG 0.664898 7_2:-77359859 Msa1078410:CDS
ATCATGCTGGAAATCAACTG+TGG 0.668033 7_2:-77359862 Msa1078410:CDS
TCATGTAACAGGGAATAGCA+AGG 0.668087 7_2:-77357931 Msa1078410:intron
GTGTTAGGAAGAGTGAGGAA+GGG 0.687678 7_2:-77358960 Msa1078410:CDS
GTACCAGCAGATGCTATCTG+TGG 0.690814 7_2:+77359050 None:intergenic
TATTGAATGGATGCTCAGAG+AGG 0.694968 7_2:+77357686 None:intergenic
ATGTGGATTTAAATCCTCAG+AGG 0.698508 7_2:+77360182 None:intergenic
ACACCTATAAAGGTTCCTTG+AGG 0.699526 7_2:+77359672 None:intergenic
GGTGTTTATGATGGTCATGG+TGG 0.701467 7_2:-77359654 Msa1078410:CDS
TGGAAATCAACTGTGGAGGG+TGG 0.718714 7_2:-77359855 Msa1078410:CDS
GGGCTGTGTTAGGAAGAGTG+AGG 0.729065 7_2:-77358965 Msa1078410:CDS
GAAGAAAGCAGAATTTAACA+GGG 0.732756 7_2:-77358215 Msa1078410:CDS
TGTAACAGGGAATAGCAAGG+AGG 0.777684 7_2:-77357928 Msa1078410:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTATTAAGTATGATTT+TGG - chr7_2:77358951-77358970 Msa1078410:CDS 10.0%
!! TTAAAAAAAATAAGATTTCT+AGG + chr7_2:77359379-77359398 None:intergenic 10.0%
!!! ATTTTTTTTAAGTTTCTATA+TGG - chr7_2:77359388-77359407 Msa1078410:intron 10.0%
!! TATAGGTATATATATAGATT+TGG - chr7_2:77357728-77357747 Msa1078410:CDS 15.0%
!!! TATAGTCATAGATAATTTTT+TGG + chr7_2:77357829-77357848 None:intergenic 15.0%
!!! CTTTTATTACAAACATATAT+TGG - chr7_2:77358141-77358160 Msa1078410:CDS 15.0%
!! AAATCAATATATAAGAATAC+CGG + chr7_2:77358514-77358533 None:intergenic 15.0%
!!! ATTTTATGAATTGATATTGA+TGG + chr7_2:77359583-77359602 None:intergenic 15.0%
!!! ATTTTAGCTAAAAAACAAGT+TGG + chr7_2:77357681-77357700 None:intergenic 20.0%
!! ACAAACATATATTGGAAATA+TGG - chr7_2:77358149-77358168 Msa1078410:CDS 20.0%
!!! TTTCTGAAATAGTTGTAAAT+TGG - chr7_2:77358452-77358471 Msa1078410:intron 20.0%
!! TTATATACCAATAATTACAG+CGG + chr7_2:77358487-77358506 None:intergenic 20.0%
!! ATTATTGGTATATAAAACAC+CGG - chr7_2:77358492-77358511 Msa1078410:intron 20.0%
!!! TTTTTTTTTGTGTGTAAATC+AGG - chr7_2:77358531-77358550 Msa1078410:intron 20.0%
!! TATGATTGAAATTATAGAGT+AGG - chr7_2:77359016-77359035 Msa1078410:CDS 20.0%
!!! AGATTTCTAGGTAATATTAA+CGG + chr7_2:77359367-77359386 None:intergenic 20.0%
!! AATAGATAAGAGAAGGATTT+TGG + chr7_2:77357415-77357434 None:intergenic 25.0%
! ATGAAACAATAGATAAGAGA+AGG + chr7_2:77357422-77357441 None:intergenic 25.0%
!!! CTAATCATGTCTATTTCTAT+AGG - chr7_2:77357711-77357730 Msa1078410:exon 25.0%
! TTGAAAATTCACCATAAAGA+TGG + chr7_2:77357938-77357957 None:intergenic 25.0%
!! TCTTTATGGTGAATTTTCAA+TGG - chr7_2:77357938-77357957 Msa1078410:intron 25.0%
! AATTCAAGCAAATAGTTCAT+TGG - chr7_2:77357965-77357984 Msa1078410:intron 25.0%
!!! ATAAGTTACTTGGTTTTTCT+AGG + chr7_2:77358209-77358228 None:intergenic 25.0%
! ATAGTTGGATATAAGTTACT+TGG + chr7_2:77358219-77358238 None:intergenic 25.0%
!! CGTAGTTTTTGTCAAAATTA+CGG + chr7_2:77358291-77358310 None:intergenic 25.0%
! CAAATCTTTCAGTATATGTT+CGG + chr7_2:77358357-77358376 None:intergenic 25.0%
! TTTCAGAAAAGGTTATCAAA+AGG - chr7_2:77358577-77358596 Msa1078410:intron 25.0%
! TTCAGAAAAGGTTATCAAAA+GGG - chr7_2:77358578-77358597 Msa1078410:intron 25.0%
! CTATAATTTCAATCATACAG+TGG + chr7_2:77359013-77359032 None:intergenic 25.0%
! ACAAACTAATTGGTAAACTA+AGG - chr7_2:77359051-77359070 Msa1078410:CDS 25.0%
!! CATATGTTTTTCTTATGCAA+CGG - chr7_2:77359148-77359167 Msa1078410:CDS 25.0%
! AAGTTCTGTTAACACAAAAT+TGG + chr7_2:77359436-77359455 None:intergenic 25.0%
! TTCGTTTCTGTCAAAATTAA+AGG - chr7_2:77359709-77359728 Msa1078410:CDS 25.0%
! CAATTACTGTAATATCATCA+TGG + chr7_2:77359900-77359919 None:intergenic 25.0%
!! TCTTGTTGTATAAAGAAGAT+AGG - chr7_2:77360061-77360080 Msa1078410:intron 25.0%
! CAACATAAATTTGTGATTGT+GGG + chr7_2:77360182-77360201 None:intergenic 25.0%
! TCAACATAAATTTGTGATTG+TGG + chr7_2:77360183-77360202 None:intergenic 25.0%
!! ATGTGCATTTAAAATTTGCT+TGG + chr7_2:77360230-77360249 None:intergenic 25.0%
! AGCTAATAAGCTAAAATATG+AGG + chr7_2:77360327-77360346 None:intergenic 25.0%
CTAAGTGTGTTCCTTTAATA+TGG - chr7_2:77357501-77357520 Msa1078410:three_prime_UTR 30.0%
AAGATACAAACTAACGTTCA+AGG - chr7_2:77357553-77357572 Msa1078410:three_prime_UTR 30.0%
AGAACAGAAAAAGTTACCTT+GGG + chr7_2:77357642-77357661 None:intergenic 30.0%
!! CTAAAAAACAAGTTGGTATG+GGG + chr7_2:77357674-77357693 None:intergenic 30.0%
!! GCTAAAAAACAAGTTGGTAT+GGG + chr7_2:77357675-77357694 None:intergenic 30.0%
!! AGCTAAAAAACAAGTTGGTA+TGG + chr7_2:77357676-77357695 None:intergenic 30.0%
TATCTATGACTATATCATGC+TGG - chr7_2:77357835-77357854 Msa1078410:CDS 30.0%
ATTGTTATGGTACAAGGATT+TGG - chr7_2:77357908-77357927 Msa1078410:CDS 30.0%
TTGTTATGGTACAAGGATTT+GGG - chr7_2:77357909-77357928 Msa1078410:CDS 30.0%
! ACCTATGAGTTCTGATTATT+TGG - chr7_2:77358013-77358032 Msa1078410:intron 30.0%
! CCTATGAGTTCTGATTATTT+GGG - chr7_2:77358014-77358033 Msa1078410:intron 30.0%
ACCTTTATAGGTGTTTATGA+TGG - chr7_2:77358047-77358066 Msa1078410:CDS 30.0%
ACCATCATAAACACCTATAA+AGG + chr7_2:77358051-77358070 None:intergenic 30.0%
ACTCTTGTGATTATGGAAAA+AGG + chr7_2:77358266-77358285 None:intergenic 30.0%
AGTTTGATCTTATAACCTCA+AGG - chr7_2:77358413-77358432 Msa1078410:intron 30.0%
GTTTGATCTTATAACCTCAA+GGG - chr7_2:77358414-77358433 Msa1078410:intron 30.0%
GGAGATCATAACAAGTAAAT+TGG + chr7_2:77358992-77359011 None:intergenic 30.0%
ATTAGCTGCAACAAACTAAT+TGG - chr7_2:77359041-77359060 Msa1078410:CDS 30.0%
GCATAAGAAAAACATATGCT+GGG + chr7_2:77359146-77359165 None:intergenic 30.0%
TGCATAAGAAAAACATATGC+TGG + chr7_2:77359147-77359166 None:intergenic 30.0%
GAATCGTAGTTAAATGTAGT+TGG - chr7_2:77359256-77359275 Msa1078410:intron 30.0%
CACAAAATTGGAGTAACATA+TGG + chr7_2:77359424-77359443 None:intergenic 30.0%
!!! TTAACAGAACTTGTTTTTGC+AGG - chr7_2:77359444-77359463 Msa1078410:intron 30.0%
TGAAGAAAGCAGAATTTAAC+AGG - chr7_2:77359494-77359513 Msa1078410:intron 30.0%
GAAGAAAGCAGAATTTAACA+GGG - chr7_2:77359495-77359514 Msa1078410:intron 30.0%
AAGATGAGAAATTGATCTTC+AGG + chr7_2:77359610-77359629 None:intergenic 30.0%
ATTGTTGCTAACGATATTCA+CGG + chr7_2:77359674-77359693 None:intergenic 30.0%
ACAACTATGATTCATGTAAC+AGG - chr7_2:77359768-77359787 Msa1078410:CDS 30.0%
CAACTATGATTCATGTAACA+GGG - chr7_2:77359769-77359788 Msa1078410:CDS 30.0%
! CAGCTATTATCAATCAGTTT+TGG + chr7_2:77359937-77359956 None:intergenic 30.0%
! TGATTGATAATAGCTGTCTA+TGG - chr7_2:77359941-77359960 Msa1078410:five_prime_UTR 30.0%
! CTTTCATTCTTTCTAGGAAT+TGG + chr7_2:77360001-77360020 None:intergenic 30.0%
AGGTTTCTTTCATTCTTTCT+AGG + chr7_2:77360007-77360026 None:intergenic 30.0%
!! TGCTAAAACCAAGTATTGAA+TGG + chr7_2:77360040-77360059 None:intergenic 30.0%
TGTTTGTGATCTGATTATGA+AGG - chr7_2:77360255-77360274 Msa1078410:five_prime_UTR 30.0%
! CTTGTATTTTCTACCACTAT+TGG - chr7_2:77360301-77360320 Msa1078410:five_prime_UTR 30.0%
!!! ATTTTGGCTCTTTTTGACAG+AGG + chr7_2:77357399-77357418 None:intergenic 35.0%
AAGCACATATGGACTCAATA+TGG + chr7_2:77357475-77357494 None:intergenic 35.0%
! CTTAGCTGTAAAAGCACATA+TGG + chr7_2:77357486-77357505 None:intergenic 35.0%
ATGTGGATTTAAATCCTCAG+AGG + chr7_2:77357531-77357550 None:intergenic 35.0%
!! GTTAGTTTGTATCTTGCATG+TGG + chr7_2:77357548-77357567 None:intergenic 35.0%
CAGAACAGAAAAAGTTACCT+TGG + chr7_2:77357643-77357662 None:intergenic 35.0%
TGCTATTGTTCTTGTCTTCT+TGG + chr7_2:77357778-77357797 None:intergenic 35.0%
!! GGAAAGTTGATGGATTGTTA+TGG - chr7_2:77357895-77357914 Msa1078410:CDS 35.0%
!! TGATGGATTGTTATGGTACA+AGG - chr7_2:77357902-77357921 Msa1078410:CDS 35.0%
GATTTGGGAAACCATCTTTA+TGG - chr7_2:77357924-77357943 Msa1078410:intron 35.0%
TCAAGCAAATAGTTCATTGG+AGG - chr7_2:77357968-77357987 Msa1078410:intron 35.0%
CCCAAATAATCAGAACTCAT+AGG + chr7_2:77358017-77358036 None:intergenic 35.0%
ATAGGTGTTTATGATGGTCA+TGG - chr7_2:77358053-77358072 Msa1078410:CDS 35.0%
! TGAGAGCATACTCTTGAAAT+TGG + chr7_2:77358120-77358139 None:intergenic 35.0%
CCAAACATGCACTTAATAGT+TGG + chr7_2:77358234-77358253 None:intergenic 35.0%
CCAACTATTAAGTGCATGTT+TGG - chr7_2:77358231-77358250 Msa1078410:CDS 35.0%
ATCAAACTATTGCCAACTCT+AGG + chr7_2:77358401-77358420 None:intergenic 35.0%
GTTAGTACCGCTGTAATTAT+TGG - chr7_2:77358477-77358496 Msa1078410:intron 35.0%
! GTTTTACAGCTGAAGATCAA+GGG - chr7_2:77358553-77358572 Msa1078410:intron 35.0%
AGATCAAGGGATTTCAGAAA+AGG - chr7_2:77358566-77358585 Msa1078410:intron 35.0%
ATGCTGTATATTGCAAATGC+AGG - chr7_2:77358714-77358733 Msa1078410:intron 35.0%
AAACTGAGAGAGATGATGTT+CGG - chr7_2:77358826-77358845 Msa1078410:CDS 35.0%
ACCACAATCTGTGAATCATA+GGG + chr7_2:77358861-77358880 None:intergenic 35.0%
AACCACAATCTGTGAATCAT+AGG + chr7_2:77358862-77358881 None:intergenic 35.0%
TGGTTATGAAACACTCTGTT+TGG - chr7_2:77358877-77358896 Msa1078410:CDS 35.0%
CATCATACAGGTACAAACTT+GGG - chr7_2:77358911-77358930 Msa1078410:CDS 35.0%
AGAAAAACATATGCTGGGAA+AGG + chr7_2:77359141-77359160 None:intergenic 35.0%
! TTTTTCTTATGCAACGGTCA+AGG - chr7_2:77359154-77359173 Msa1078410:CDS 35.0%
AACCTTCAACCAAATGATTG+CGG - chr7_2:77359181-77359200 Msa1078410:intron 35.0%
!! AGTTGGTAGCCTTATAATTG+CGG - chr7_2:77359273-77359292 Msa1078410:intron 35.0%
! GAAAACTCTGATAGTGTTTC+AGG - chr7_2:77359314-77359333 Msa1078410:intron 35.0%
!! ATTGGCTTGAAAAAGGTTTC+AGG + chr7_2:77359547-77359566 None:intergenic 35.0%
!! ACTGAGAATTGGCTTGAAAA+AGG + chr7_2:77359554-77359573 None:intergenic 35.0%
TGAGAAATTGATCTTCAGGT+TGG + chr7_2:77359606-77359625 None:intergenic 35.0%
TTTCTCATCTTTGCTTCTGA+TGG - chr7_2:77359619-77359638 Msa1078410:CDS 35.0%
TCTTTGCTTCTGATGGTTTA+TGG - chr7_2:77359626-77359645 Msa1078410:CDS 35.0%
CTTTGCTTCTGATGGTTTAT+GGG - chr7_2:77359627-77359646 Msa1078410:CDS 35.0%
! TCACTCCTTGTTCAATCTTT+TGG + chr7_2:77359867-77359886 None:intergenic 35.0%
AAAAGATTGAACAAGGAGTG+AGG - chr7_2:77359866-77359885 Msa1078410:CDS 35.0%
CCATAACCATAAACTACTGT+GGG + chr7_2:77360111-77360130 None:intergenic 35.0%
ACCATAACCATAAACTACTG+TGG + chr7_2:77360112-77360131 None:intergenic 35.0%
TTGAAACTTGAAGAGTCTCA+TGG - chr7_2:77360136-77360155 Msa1078410:five_prime_UTR 35.0%
CTAAAATATGAGGCCAATAG+TGG + chr7_2:77360317-77360336 None:intergenic 35.0%
TATTAGCTCAAACTCAAGCA+AGG - chr7_2:77360339-77360358 Msa1078410:five_prime_UTR 35.0%
ATTAGCTCAAACTCAAGCAA+GGG - chr7_2:77360340-77360359 Msa1078410:five_prime_UTR 35.0%
! TCAGAGGTGTGCCATATTAA+AGG + chr7_2:77357515-77357534 None:intergenic 40.0%
TTTAATATGGCACACCTCTG+AGG - chr7_2:77357514-77357533 Msa1078410:three_prime_UTR 40.0%
!! AAAAACAAGTTGGTATGGGG+TGG + chr7_2:77357671-77357690 None:intergenic 40.0%
ATCATGCTGGAAATCAACTG+TGG - chr7_2:77357848-77357867 Msa1078410:CDS 40.0%
GATGTGAAAGGGAAAGTTGA+TGG - chr7_2:77357885-77357904 Msa1078410:CDS 40.0%
TCATAGGTCCTGATTCAAGT+TGG + chr7_2:77358001-77358020 None:intergenic 40.0%
TCTGATTATTTGGGTCCTCA+AGG - chr7_2:77358023-77358042 Msa1078410:intron 40.0%
ACACCTATAAAGGTTCCTTG+AGG + chr7_2:77358041-77358060 None:intergenic 40.0%
! AGATTTGTTTCCTGTCCATG+AGG - chr7_2:77358370-77358389 Msa1078410:intron 40.0%
GATCTTATAACCTCAAGGGA+CGG - chr7_2:77358418-77358437 Msa1078410:intron 40.0%
ATCTTATAACCTCAAGGGAC+GGG - chr7_2:77358419-77358438 Msa1078410:intron 40.0%
! GGTTTTACAGCTGAAGATCA+AGG - chr7_2:77358552-77358571 Msa1078410:intron 40.0%
! GCATTTTCTGCAACAGATGA+TGG - chr7_2:77358600-77358619 Msa1078410:intron 40.0%
TGTCTCTTGTGAAGAAGCAA+TGG - chr7_2:77358628-77358647 Msa1078410:intron 40.0%
ATCTGCTGGTACATGTTGTT+TGG - chr7_2:77358671-77358690 Msa1078410:intron 40.0%
! TTGGCAGGGATAATTTGCAA+TGG - chr7_2:77358690-77358709 Msa1078410:intron 40.0%
TCCCTATGATTCACAGATTG+TGG - chr7_2:77358857-77358876 Msa1078410:CDS 40.0%
GCATCATACAGGTACAAACT+TGG - chr7_2:77358910-77358929 Msa1078410:CDS 40.0%
ACCTTCAACCAAATGATTGC+GGG - chr7_2:77359182-77359201 Msa1078410:intron 40.0%
TTTCTGCGACCGCAATTATA+AGG + chr7_2:77359285-77359304 None:intergenic 40.0%
TTGCAGGTTTCAAGATCCAT+AGG - chr7_2:77359460-77359479 Msa1078410:intron 40.0%
CTTCAGATATGCATCACCTA+TGG + chr7_2:77359479-77359498 None:intergenic 40.0%
TCAGGTAGTCTAAACTTCTG+TGG + chr7_2:77359529-77359548 None:intergenic 40.0%
TAACGATATTCACGGCTACT+TGG + chr7_2:77359666-77359685 None:intergenic 40.0%
TCATGTAACAGGGAATAGCA+AGG - chr7_2:77359779-77359798 Msa1078410:CDS 40.0%
GACCTCCAAAAGATTGAACA+AGG - chr7_2:77359859-77359878 Msa1078410:CDS 40.0%
! CTCCTTGTTCAATCTTTTGG+AGG + chr7_2:77359864-77359883 None:intergenic 40.0%
TCTCCTCTTTCAATCAGAGA+TGG - chr7_2:77359967-77359986 Msa1078410:five_prime_UTR 40.0%
TATTGAATGGATGCTCAGAG+AGG + chr7_2:77360027-77360046 None:intergenic 40.0%
CTGAGCATCCATTCAATACT+TGG - chr7_2:77360029-77360048 Msa1078410:intron 40.0%
CCCACAGTAGTTTATGGTTA+TGG - chr7_2:77360108-77360127 Msa1078410:five_prime_UTR 40.0%
TGGACTCAATATGGCAGAGT+TGG + chr7_2:77357466-77357485 None:intergenic 45.0%
! CAGAGAAAACGAAAGCGTGT+TGG + chr7_2:77357588-77357607 None:intergenic 45.0%
! GCTACTAGTTTCTCATCCCA+AGG - chr7_2:77357623-77357642 Msa1078410:three_prime_UTR 45.0%
ATGCTGGAAATCAACTGTGG+AGG - chr7_2:77357851-77357870 Msa1078410:CDS 45.0%
TGCTGGAAATCAACTGTGGA+GGG - chr7_2:77357852-77357871 Msa1078410:CDS 45.0%
!! GTGGTGATGGAGATGTGAAA+GGG - chr7_2:77357874-77357893 Msa1078410:CDS 45.0%
GATCGTAGCCAACTTGAATC+AGG - chr7_2:77357990-77358009 Msa1078410:intron 45.0%
GGTCCTCAAGGAACCTTTAT+AGG - chr7_2:77358035-77358054 Msa1078410:CDS 45.0%
GGTGTTTATGATGGTCATGG+TGG - chr7_2:77358056-77358075 Msa1078410:CDS 45.0%
TACGGCGACTCTTGTGATTA+TGG + chr7_2:77358273-77358292 None:intergenic 45.0%
AATTTGAATCCCGTCCCTTG+AGG + chr7_2:77358431-77358450 None:intergenic 45.0%
AAACCACAGATAGCATCTGC+TGG - chr7_2:77358657-77358676 Msa1078410:intron 45.0%
! CTGGTACATGTTGTTTGGCA+GGG - chr7_2:77358676-77358695 Msa1078410:intron 45.0%
TTGCAAATGCAGGAGACTCA+AGG - chr7_2:77358724-77358743 Msa1078410:intron 45.0%
TGCAAATGCAGGAGACTCAA+GGG - chr7_2:77358725-77358744 Msa1078410:intron 45.0%
TGTGTTAGGAAGAGTGAGGA+AGG - chr7_2:77358749-77358768 Msa1078410:intron 45.0%
GTGTTAGGAAGAGTGAGGAA+GGG - chr7_2:77358750-77358769 Msa1078410:intron 45.0%
AAGAGTGAGGAAGGGAACAA+GGG - chr7_2:77358758-77358777 Msa1078410:intron 45.0%
TCCCGCAATCATTTGGTTGA+AGG + chr7_2:77359186-77359205 None:intergenic 45.0%
ACGCGGCAAGGTTTAAATTG+TGG - chr7_2:77359205-77359224 Msa1078410:intron 45.0%
AGTCTAAACTTCTGTGGCAG+AGG + chr7_2:77359523-77359542 None:intergenic 45.0%
GATGGCTCACTACTGAGAAT+TGG + chr7_2:77359565-77359584 None:intergenic 45.0%
GAAACGAAGCTTACATTGCG+TGG + chr7_2:77359697-77359716 None:intergenic 45.0%
TGTAACAGGGAATAGCAAGG+AGG - chr7_2:77359782-77359801 Msa1078410:CDS 45.0%
CTGCCATCTCTGATTGAAAG+AGG + chr7_2:77359973-77359992 None:intergenic 45.0%
CTCTTTCAATCAGAGATGGC+AGG - chr7_2:77359971-77359990 Msa1078410:five_prime_UTR 45.0%
CAGTCTCCCACAGTAGTTTA+TGG - chr7_2:77360102-77360121 Msa1078410:five_prime_UTR 45.0%
TGGAAATCAACTGTGGAGGG+TGG - chr7_2:77357855-77357874 Msa1078410:CDS 50.0%
!! GGTGGTGATGGAGATGTGAA+AGG - chr7_2:77357873-77357892 Msa1078410:CDS 50.0%
CAACTCTAGGCAACACCTCA+TGG + chr7_2:77358388-77358407 None:intergenic 50.0%
!! CATGAGGTGTTGCCTAGAGT+TGG - chr7_2:77358386-77358405 Msa1078410:intron 50.0%
GTACCAGCAGATGCTATCTG+TGG + chr7_2:77358663-77358682 None:intergenic 50.0%
! GCTGGTACATGTTGTTTGGC+AGG - chr7_2:77358675-77358694 Msa1078410:intron 50.0%
GAAGAGTGAGGAAGGGAACA+AGG - chr7_2:77358757-77358776 Msa1078410:intron 50.0%
CACTCTGTTTGGCGTGTGAA+AGG - chr7_2:77358888-77358907 Msa1078410:CDS 50.0%
!! GCGTGTGAAAGGCATCATAC+AGG - chr7_2:77358899-77358918 Msa1078410:CDS 50.0%
AACCAAATGATTGCGGGACG+CGG - chr7_2:77359188-77359207 Msa1078410:intron 50.0%
TCAACTGTGGAGGGTGGTGA+TGG - chr7_2:77357861-77357880 Msa1078410:CDS 55.0%
CTAGGCAACACCTCATGGAC+AGG + chr7_2:77358383-77358402 None:intergenic 55.0%
GGAGACTCAAGGGCTGTGTT+AGG - chr7_2:77358735-77358754 Msa1078410:intron 55.0%
GGGCTGTGTTAGGAAGAGTG+AGG - chr7_2:77358745-77358764 Msa1078410:intron 55.0%
TAGTCTTCGCAGCTGCGTGC+AGG + chr7_2:77359081-77359100 None:intergenic 60.0%
TGCCGCGTCCCGCAATCATT+TGG + chr7_2:77359193-77359212 None:intergenic 60.0%
AATGATTGCGGGACGCGGCA+AGG - chr7_2:77359193-77359212 Msa1078410:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 77357328 77360404 77357328 ID=Msa1078410;Name=Msa1078410
chr7_2 mRNA 77357328 77360404 77357328 ID=Msa1078410-mRNA-1;Parent=Msa1078410;Name=Msa1078410-mRNA-1;_AED=0.03;_eAED=0.03;_QI=424|1|1|1|0.75|0.6|5|396|370
chr7_2 exon 77357328 77357942 77357328 ID=Msa1078410-mRNA-1:exon:18940;Parent=Msa1078410-mRNA-1
chr7_2 exon 77358030 77358266 77358030 ID=Msa1078410-mRNA-1:exon:18939;Parent=Msa1078410-mRNA-1
chr7_2 exon 77358812 77359179 77358812 ID=Msa1078410-mRNA-1:exon:18938;Parent=Msa1078410-mRNA-1
chr7_2 exon 77359604 77359999 77359604 ID=Msa1078410-mRNA-1:exon:18937;Parent=Msa1078410-mRNA-1
chr7_2 exon 77360088 77360404 77360088 ID=Msa1078410-mRNA-1:exon:18936;Parent=Msa1078410-mRNA-1
chr7_2 five_prime_UTR 77360088 77360404 77360088 ID=Msa1078410-mRNA-1:five_prime_utr;Parent=Msa1078410-mRNA-1
chr7_2 five_prime_UTR 77359893 77359999 77359893 ID=Msa1078410-mRNA-1:five_prime_utr;Parent=Msa1078410-mRNA-1
chr7_2 CDS 77359604 77359892 77359604 ID=Msa1078410-mRNA-1:cds;Parent=Msa1078410-mRNA-1
chr7_2 CDS 77358812 77359179 77358812 ID=Msa1078410-mRNA-1:cds;Parent=Msa1078410-mRNA-1
chr7_2 CDS 77358030 77358266 77358030 ID=Msa1078410-mRNA-1:cds;Parent=Msa1078410-mRNA-1
chr7_2 CDS 77357724 77357942 77357724 ID=Msa1078410-mRNA-1:cds;Parent=Msa1078410-mRNA-1
chr7_2 three_prime_UTR 77357328 77357723 77357328 ID=Msa1078410-mRNA-1:three_prime_utr;Parent=Msa1078410-mRNA-1
Gene Sequence

>Msa1078410

ATGACTATATCATGCTGGAAATCAACTGTGGAGGGTGGTGATGGAGATGTGAAAGGGAAAGTTGATGGATTGTTATGGTACAAGGATTTGGGAAACCATCTTTATGGTGAATTTTCAATGGCTGTAATTCAAGCAAATAGTTCATTGGAGGATCGTAGCCAACTTGAATCAGGACCTATGAGTTCTGATTATTTGGGTCCTCAAGGAACCTTTATAGGTGTTTATGATGGTCATGGTGGAACTGCAGCTGCTCAGTTTGTTAATGACAATCTATTCTCCAATTTCAAGAGTTTTACAGCTGAAGATCAAGGGATTTCAGAAAAGGTTATCAAAAGGGCATTTTCTGCAACAGATGATGGTTTTCTGTCTCTTGTGAAGAAGCAATGGCAAAGCAAACCACAGATAGCATCTGCTGGTACATGTTGTTTGGCAGGGATAATTTGCAATGGTATGCTGTATATTGCAAATGCAGGAGACTCAAGGGCTGTGTTAGGAAGAGTGAGGAAGGGAACAAGGGAAACATTAGCTGTTCAGTTATCTACTGAACACAATGTTAATATAGAAACTGAGAGAGATGATGTTCGGTCAAAGCATCCCTATGATTCACAGATTGTGGTTATGAAACACTCTGTTTGGCGTGTGAAAGGCATCATACAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAAGCAGAATTTAACAGGGAGCCTCTGCCACAGAAGTTTAGACTACCTGAAACCTTTTTCAAGCCAATTCTCAGTAGTGAGCCATCAATATCAATTCATAAAATCCAACCTGAAGATCAATTTCTCATCTTTGCTTCTGATGGTTTATGGGAGCATCTTAGCAACCAAGTAGCCGTGAATATCGTTAGCAACAATCCACGCAATGGAATAGCAAGGAGGCTTGTGAAAGCAGCACTTAAAGAAGCAGCGAAGAAGCGAGAAATAAGATTATCAGACCTCCAAAAGATTGAACAAGGAGTGAGGAGACACTTCCATGATGATATTACAGTAATTGTTGTATATCTAAATCCAAAACTGATTGATAATAGCTGTCTATGGAGTTCTCCTCTTTCAATCAGAGATGGCAGGCATGCCAATTCCTAG
Protein sequence

>Msa1078410

MTISCWKSTVEGGDGDVKGKVDGLLWYKDLGNHLYGEFSMAVIQANSSLEDRSQLESGPMSSDYLGPQGTFIGVYDGHGGTAAAQFVNDNLFSNFKSFTAEDQGISEKVIKRAFSATDDGFLSLVKKQWQSKPQIASAGTCCLAGIICNGMLYIANAGDSRAVLGRVRKGTRETLAVQLSTEHNVNIETERDDVRSKHPYDSQIVVMKHSVWRVKGIIQVSRSIGDAYLKKAEFNREPLPQKFRLPETFFKPILSSEPSISIHKIQPEDQFLIFASDGLWEHLSNQVAVNIVSNNPRNGIARRLVKAALKEAAKKREIRLSDLQKIEQGVRRHFHDDITVIVVYLNPKLIDNSCLWSSPLSIRDGRHANS*