AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1125460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 181 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAATTGCAAAACGGAAAA+TGG 0.175870 7_3:-76990254 None:intergenic
TGATGTTACCTGTGAGATTT+TGG 0.217449 7_3:+76990672 Msa1125460:five_prime_UTR
TGCCATGACTTATAAAATTC+TGG 0.240095 7_3:+76991095 Msa1125460:five_prime_UTR
CTTTGATTAAAGGGTTGTTT+AGG 0.242123 7_3:+76990584 Msa1125460:five_prime_UTR
CTTGGTTGTCAAACTTTGTT+TGG 0.266551 7_3:+76991309 Msa1125460:five_prime_UTR
AGAAGGGTGGTGGTGGAGTT+TGG 0.266647 7_3:-76990032 None:intergenic
AGGCTCCTTATCCTTCATTT+AGG 0.276315 7_3:-76994415 None:intergenic
AGGAAGTGGGTTAGGGTTTG+TGG 0.287613 7_3:-76990004 None:intergenic
TGAGGTGGTGGTTGAGGAAA+TGG 0.300350 7_3:-76989967 None:intergenic
TCGACTTCCATCTCTTCTCT+TGG 0.302493 7_3:+76990065 Msa1125460:five_prime_UTR
TGGATTTGAGGAAGTGGGTT+AGG 0.308574 7_3:-76990012 None:intergenic
TTTGATTAAAGGGTTGTTTA+GGG 0.314956 7_3:+76990585 Msa1125460:five_prime_UTR
TGAAGGGTGGAGTGAGGTGG+TGG 0.324707 7_3:-76989979 None:intergenic
TCTTGTATTGTGATGATTGA+TGG 0.325090 7_3:+76990889 Msa1125460:five_prime_UTR
GTTTGATGAAATGAGGAAAA+TGG 0.326983 7_3:+76990531 Msa1125460:five_prime_UTR
ACTTATAAAATTCTGGTTGC+TGG 0.327645 7_3:+76991102 Msa1125460:five_prime_UTR
ATTCATGGGTTTGTTAAATC+TGG 0.329318 7_3:+76990379 Msa1125460:five_prime_UTR
AGGGTTTGTGGGGTGAAGGG+TGG 0.336086 7_3:-76989992 None:intergenic
GTTTATGAGATGATTGAATT+GGG 0.336232 7_3:+76990637 Msa1125460:five_prime_UTR
GGTGGTGGGTTGAGGATTGG+TGG 0.344340 7_3:-76989875 None:intergenic
GGTTTATGAGATGATTGAAT+TGG 0.347943 7_3:+76990636 Msa1125460:five_prime_UTR
GGTTAGGGTTTGTGGGGTGA+AGG 0.353454 7_3:-76989996 None:intergenic
CGGAAAATGGGTTCGGTTTG+TGG 0.354992 7_3:-76990241 None:intergenic
GGGTGAAGGGTGGAGTGAGG+TGG 0.357494 7_3:-76989982 None:intergenic
TGCTTCATATAATAAGTTGA+TGG 0.366068 7_3:+76991203 Msa1125460:five_prime_UTR
ACAAAATAATCATACCCTTT+AGG 0.370573 7_3:-76990772 None:intergenic
GATTGAAGAGGCAATGAGAT+TGG 0.370990 7_3:+76990930 Msa1125460:five_prime_UTR
GGATTTGAGGAAGTGGGTTA+GGG 0.375479 7_3:-76990011 None:intergenic
CGACTTCCATCTCTTCTCTT+GGG 0.377757 7_3:+76990066 Msa1125460:five_prime_UTR
GGTGGTGGTGGGTTGAGGAT+TGG 0.378579 7_3:-76989878 None:intergenic
TTGAGAGCATTGGCAGGGGT+TGG 0.379413 7_3:-76990203 None:intergenic
GTAAATGAAATGCTTGATAA+GGG 0.383726 7_3:+76991165 Msa1125460:five_prime_UTR
GGAAGTGGGTTAGGGTTTGT+GGG 0.389433 7_3:-76990003 None:intergenic
GTGATTGTTGGTGGTGGTGG+TGG 0.392677 7_3:-76989893 None:intergenic
TCTTGATTAGTGGTTATTGT+AGG 0.393307 7_3:+76990479 Msa1125460:five_prime_UTR
TTTGATGAAATGAGGAAAAT+GGG 0.394625 7_3:+76990532 Msa1125460:five_prime_UTR
GAAGTGGGTGTAGTGTTGGG+TGG 0.396216 7_3:-76989942 None:intergenic
ATTGATGGTTTGAGAGGATT+GGG 0.399046 7_3:+76990904 Msa1125460:five_prime_UTR
GGGTTGAGGATTGGTGGTGG+TGG 0.401360 7_3:-76989869 None:intergenic
GGTGGTGGAGTTTGGATTTG+AGG 0.401538 7_3:-76990024 None:intergenic
AATGCTTAAAGAGGAGGGTT+TGG 0.403436 7_3:+76990960 Msa1125460:five_prime_UTR
GGTAAATGAAATGCTTGATA+AGG 0.403566 7_3:+76991164 Msa1125460:five_prime_UTR
GTTATGCGTAGGTTAATTGA+TGG 0.404197 7_3:+76990325 Msa1125460:five_prime_UTR
GTATTAAAAGTAACAACATT+TGG 0.407276 7_3:-76990562 None:intergenic
GTGGAGTGAGGTGGTGGTTG+AGG 0.409385 7_3:-76989973 None:intergenic
TGTAGGATTGATGAAGGGAT+TGG 0.411829 7_3:+76990610 Msa1125460:five_prime_UTR
TCTCAACCTATTTGCATCTT+CGG 0.413513 7_3:-76991040 None:intergenic
GTGGGTGTAGTGTTGGGTGG+GGG 0.419805 7_3:-76989939 None:intergenic
TGATGGAAAACCGAGTGTTT+CGG 0.420401 7_3:+76990342 Msa1125460:five_prime_UTR
TATCCTTCATTTAGGAGGGT+TGG 0.421718 7_3:-76994407 None:intergenic
GTTAGGGTTTGTGGGGTGAA+GGG 0.423539 7_3:-76989995 None:intergenic
GAAGGACCGAAGATGCAAAT+AGG 0.425552 7_3:+76991034 Msa1125460:five_prime_UTR
GGGTGAAAGAAGGGTGGTGG+TGG 0.427560 7_3:-76990039 None:intergenic
TGGAGGTTATTTATGAGTTG+TGG 0.433505 7_3:+76990839 Msa1125460:five_prime_UTR
CTCCTTATCCTTCATTTAGG+AGG 0.435154 7_3:-76994412 None:intergenic
TGCAAAACGGAAAATGGGTT+CGG 0.437354 7_3:-76990248 None:intergenic
GGAGTTTGGATTTGAGGAAG+TGG 0.439753 7_3:-76990018 None:intergenic
AAGGGTTGTTTAGGGAATGT+AGG 0.439768 7_3:+76990593 Msa1125460:five_prime_UTR
GGTGGGTTGAGGATTGGTGG+TGG 0.440646 7_3:-76989872 None:intergenic
TTGGTTGTCAAACTTTGTTT+GGG 0.441770 7_3:+76991310 Msa1125460:five_prime_UTR
CCGCATCACAAAGATCTTGA+AGG 0.442050 7_3:-76991011 None:intergenic
AGGGAATGTAGGATTGATGA+AGG 0.442876 7_3:+76990604 Msa1125460:five_prime_UTR
GGAAAATGGGTTCGGTTTGT+GGG 0.443096 7_3:-76990240 None:intergenic
CGCTGCTCCTGCCTCCTCAT+CGG 0.446286 7_3:+76992546 Msa1125460:CDS
AAGTGGGTGTAGTGTTGGGT+GGG 0.446355 7_3:-76989941 None:intergenic
CTTGATTAGTGGTTATTGTA+GGG 0.448286 7_3:+76990480 Msa1125460:five_prime_UTR
TCAAGCAGAAGGAGAGTTAG+TGG 0.449600 7_3:+76991143 Msa1125460:five_prime_UTR
TGTGCTTCAATCTCCTCGAC+GGG 0.450933 7_3:+76994303 Msa1125460:CDS
CTTTGTTATACTTGCGCTTG+TGG 0.451503 7_3:-76994330 None:intergenic
GATGTGATTGTTGGTGGTGG+TGG 0.451570 7_3:-76989896 None:intergenic
AGTGGGTGTAGTGTTGGGTG+GGG 0.455293 7_3:-76989940 None:intergenic
GAGGAAGTGGGTGTAGTGTT+GGG 0.455322 7_3:-76989945 None:intergenic
TTTGTTATACTTGCGCTTGT+GGG 0.456204 7_3:-76994329 None:intergenic
ATTCTGGTTGCTGGGTATAG+AGG 0.459433 7_3:+76991111 Msa1125460:five_prime_UTR
GGAGGAAGTGGGTGTAGTGT+TGG 0.461243 7_3:-76989946 None:intergenic
TTTGGTTGACGGGCTTTGTA+AGG 0.466132 7_3:+76990690 Msa1125460:five_prime_UTR
AAGATGCTTATTCAAAAGTC+AGG 0.467910 7_3:+76994350 Msa1125460:CDS
GATTGATGGTTTGAGAGGAT+TGG 0.470434 7_3:+76990903 Msa1125460:five_prime_UTR
GGTTTGTGGGCAAGAGAAGA+TGG 0.472173 7_3:-76990227 None:intergenic
CTTGATAATGCCTACGGTGT+TGG 0.475774 7_3:-76991242 None:intergenic
TGAATTGCAAAACGGAAAAT+GGG 0.476288 7_3:-76990253 None:intergenic
TCCTTATCCTTCATTTAGGA+GGG 0.478639 7_3:-76994411 None:intergenic
CTTATAAAATTCTGGTTGCT+GGG 0.479719 7_3:+76991103 Msa1125460:five_prime_UTR
AGAGCATTGGCAGGGGTTGG+TGG 0.481929 7_3:-76990200 None:intergenic
TTGCAAGTCCACTTTGAAGA+TGG 0.483089 7_3:+76991434 Msa1125460:five_prime_UTR
CTTCAAGATCTTTGTGATGC+GGG 0.483600 7_3:+76991012 Msa1125460:five_prime_UTR
AAACAATATAAGATTTAACT+TGG 0.484989 7_3:+76991291 Msa1125460:five_prime_UTR
CATTATCAAGTGAACAAGAT+TGG 0.487154 7_3:+76991255 Msa1125460:five_prime_UTR
GATGGCTTGAGAGCATTGGC+AGG 0.489023 7_3:-76990209 None:intergenic
AGATGAAAGTGAGGAGGGTG+CGG 0.490110 7_3:-76990177 None:intergenic
AGATTACTTGCTTCAAGCAA+AGG 0.493370 7_3:+76991060 Msa1125460:five_prime_UTR
AAGTCGAAGTGGGTGAAAGA+AGG 0.494239 7_3:-76990049 None:intergenic
TGAAAGTGAGGAGGGTGCGG+AGG 0.494306 7_3:-76990174 None:intergenic
ATAATCAGATGGTTAAGGAT+AGG 0.494625 7_3:+76990428 Msa1125460:five_prime_UTR
TGCACAACCGATGAGGAGGC+AGG 0.495735 7_3:-76992553 None:intergenic
ATCAAGTGAACAAGATTGGC+AGG 0.496640 7_3:+76991259 Msa1125460:five_prime_UTR
TATTCAAAAGTCAGGCTCCA+TGG 0.497611 7_3:+76994358 Msa1125460:CDS
GCCTCCTCATCGGTTGTGCA+TGG 0.498821 7_3:+76992556 Msa1125460:CDS
GTGGGGTGAAGGGTGGAGTG+AGG 0.498911 7_3:-76989985 None:intergenic
GGTTGAGGAAATGGAGGAAG+TGG 0.501724 7_3:-76989958 None:intergenic
TGGAAGCCCAAGAGAAGAGA+TGG 0.504606 7_3:-76990072 None:intergenic
ACAGGCGTGTGATTTGTTGA+TGG 0.507777 7_3:+76990726 Msa1125460:five_prime_UTR
AGAAGATGGCTTGAGAGCAT+TGG 0.508535 7_3:-76990213 None:intergenic
GTAGGATTGATGAAGGGATT+GGG 0.509129 7_3:+76990611 Msa1125460:five_prime_UTR
TGCGCCTCCCTCTGCTGCAC+AGG 0.509166 7_3:+76992588 Msa1125460:CDS
AGTCGAAGTGGGTGAAAGAA+GGG 0.512098 7_3:-76990048 None:intergenic
GAAGAGATGGAAGTCGAAGT+GGG 0.516775 7_3:-76990059 None:intergenic
TTATTATATGAAGCAAGATC+AGG 0.525958 7_3:-76991195 None:intergenic
TAGATGTGTTCGTGGAGGAA+TGG 0.529377 7_3:+76994273 Msa1125460:CDS
AGTGATGTGATTGTTGGTGG+TGG 0.530217 7_3:-76989899 None:intergenic
GAGTTTGGATTTGAGGAAGT+GGG 0.530778 7_3:-76990017 None:intergenic
GTTGACGGGCTTTGTAAGGA+AGG 0.532301 7_3:+76990694 Msa1125460:five_prime_UTR
ATTTATGAGTTGTGGAGCAA+AGG 0.534265 7_3:+76990847 Msa1125460:five_prime_UTR
ATTCAAAAGTCAGGCTCCAT+GGG 0.536366 7_3:+76994359 Msa1125460:CDS
ATATTAAAAGTAAACACATC+AGG 0.537741 7_3:-76990457 None:intergenic
TGGAGATGTTTGATGAAATG+AGG 0.540220 7_3:+76990524 Msa1125460:five_prime_UTR
GTGAGAGAAGGTGTCAAGGG+TGG 0.540681 7_3:-76990092 None:intergenic
TCATATAATAAGTTGATGGA+TGG 0.544029 7_3:+76991207 Msa1125460:five_prime_UTR
GGAGGTGTGGTTGTGAGAGA+AGG 0.545393 7_3:-76990104 None:intergenic
GTGTGCTTCAATCTCCTCGA+CGG 0.546739 7_3:+76994302 Msa1125460:CDS
GATTGATGAAGGGATTGGGA+TGG 0.546805 7_3:+76990615 Msa1125460:five_prime_UTR
CGGGCTTTGTAAGGAAGGGA+AGG 0.547322 7_3:+76990699 Msa1125460:five_prime_UTR
GTTGAGGAAATGGAGGAAGT+GGG 0.550410 7_3:-76989957 None:intergenic
CCACACCTCCTACGAATGGA+TGG 0.551673 7_3:+76990117 Msa1125460:five_prime_UTR
AGAAGAGATGGAAGTCGAAG+TGG 0.552252 7_3:-76990060 None:intergenic
GGGAAGAGTGATGTGATTGT+TGG 0.554072 7_3:-76989905 None:intergenic
TTGCATTTAATGTTATGCGT+AGG 0.556316 7_3:+76990314 Msa1125460:five_prime_UTR
GAACCAACCCTCCTAAATGA+AGG 0.556466 7_3:+76994404 Msa1125460:CDS
AGTAAGACTGAATTGCAAAA+CGG 0.562630 7_3:-76990261 None:intergenic
GAGCAGCGAATTGTAGATGA+TGG 0.564385 7_3:-76992531 None:intergenic
TGTTCACTTGATAATGCCTA+CGG 0.566382 7_3:-76991248 None:intergenic
AAGATCTTTGTGATGCGGGA+AGG 0.568642 7_3:+76991016 Msa1125460:five_prime_UTR
CCTTCAAGATCTTTGTGATG+CGG 0.570762 7_3:+76991011 Msa1125460:five_prime_UTR
ACAATACAAGAAATCAAGCT+AGG 0.570810 7_3:-76990877 None:intergenic
GGTGGAGATGAAAGTGAGGA+GGG 0.574042 7_3:-76990182 None:intergenic
TAAATGAAATGCTTGATAAG+GGG 0.576634 7_3:+76991166 Msa1125460:five_prime_UTR
CCCGTCAACCAAAATCTCAC+AGG 0.584991 7_3:-76990680 None:intergenic
TCACAGGTAACATCAGAAAG+TGG 0.587270 7_3:-76990664 None:intergenic
GTATGTTACCTGTGCAGCAG+AGG 0.587827 7_3:-76992596 None:intergenic
AGGATTGGGGAAGATTGAAG+AGG 0.588100 7_3:+76990918 Msa1125460:five_prime_UTR
AGTGGGTGAAAGAAGGGTGG+TGG 0.589081 7_3:-76990042 None:intergenic
TGAAAGAGTATGAAGACCAC+TGG 0.589790 7_3:+76992508 Msa1125460:exon
GTTGCTGGGTATAGAGGAGA+GGG 0.590731 7_3:+76991117 Msa1125460:five_prime_UTR
GGTGGTGGTTGAGGAAATGG+AGG 0.592582 7_3:-76989964 None:intergenic
GGAGAGGGAAATCAAGCAGA+AGG 0.592690 7_3:+76991132 Msa1125460:five_prime_UTR
CCATCCATTCGTAGGAGGTG+TGG 0.592817 7_3:-76990117 None:intergenic
TGGCTTGAGAGCATTGGCAG+GGG 0.596229 7_3:-76990207 None:intergenic
GGGAATGTAGGATTGATGAA+GGG 0.597823 7_3:+76990605 Msa1125460:five_prime_UTR
AGCACCAACCATCTTCAAAG+TGG 0.599416 7_3:-76991442 None:intergenic
GAAGTGGGTTAGGGTTTGTG+GGG 0.600198 7_3:-76990002 None:intergenic
GAATGTACTAGATGTGTTCG+TGG 0.600350 7_3:+76994265 Msa1125460:CDS
TGTTTGGGATAAGATTGTTG+AGG 0.603557 7_3:+76991325 Msa1125460:five_prime_UTR
TTGACGGGCTTTGTAAGGAA+GGG 0.604933 7_3:+76990695 Msa1125460:five_prime_UTR
AAGAGTGATGTGATTGTTGG+TGG 0.605240 7_3:-76989902 None:intergenic
ACAACCACACCTCCTACGAA+TGG 0.606639 7_3:+76990113 Msa1125460:five_prime_UTR
TTTATGAGATGATTGAATTG+GGG 0.607383 7_3:+76990638 Msa1125460:five_prime_UTR
ATGGCTTGAGAGCATTGGCA+GGG 0.607636 7_3:-76990208 None:intergenic
GGTTGTGAGAGAAGGTGTCA+AGG 0.608285 7_3:-76990096 None:intergenic
GGTTGGTGGAGATGAAAGTG+AGG 0.611173 7_3:-76990186 None:intergenic
TGGTGGAGATGAAAGTGAGG+AGG 0.612345 7_3:-76990183 None:intergenic
TATATAATTGCCAACACCGT+AGG 0.612403 7_3:+76991232 Msa1125460:five_prime_UTR
ATATTACAAACCGAAACACT+CGG 0.613026 7_3:-76990352 None:intergenic
CGAAGTGGGTGAAAGAAGGG+TGG 0.618797 7_3:-76990045 None:intergenic
GTTGTGAGAGAAGGTGTCAA+GGG 0.619925 7_3:-76990095 None:intergenic
GTGATGATTGATGGTTTGAG+AGG 0.620383 7_3:+76990898 Msa1125460:five_prime_UTR
ACGTGCCATCCATTCGTAGG+AGG 0.620656 7_3:-76990122 None:intergenic
TATGTTACCTGTGCAGCAGA+GGG 0.620757 7_3:-76992595 None:intergenic
ACCATGCACAACCGATGAGG+AGG 0.621885 7_3:-76992557 None:intergenic
GTTACCTGTGCAGCAGAGGG+AGG 0.626972 7_3:-76992592 None:intergenic
AGTAACATACATAAGACCCA+TGG 0.641591 7_3:-76994375 None:intergenic
TTGATGGTTTGAGAGGATTG+GGG 0.643683 7_3:+76990905 Msa1125460:five_prime_UTR
GGTTGCTGGGTATAGAGGAG+AGG 0.647348 7_3:+76991116 Msa1125460:five_prime_UTR
CGCTTGTGGGAACCCCGTCG+AGG 0.647356 7_3:-76994316 None:intergenic
AGTACGTGCCATCCATTCGT+AGG 0.650285 7_3:-76990125 None:intergenic
AGAACCATGCACAACCGATG+AGG 0.680944 7_3:-76992560 None:intergenic
TTGATGAAATGAGGAAAATG+GGG 0.682853 7_3:+76990533 Msa1125460:five_prime_UTR
GAATTGTAGATGATGGCCAG+TGG 0.712157 7_3:-76992524 None:intergenic
GCGTGAATGGACTAGCAGAG+TGG 0.716730 7_3:-76989788 None:intergenic
GTGCTTCAATCTCCTCGACG+GGG 0.719267 7_3:+76994304 Msa1125460:CDS
TACATTCAAAGAAAGCAGTG+CGG 0.739974 7_3:-76994249 None:intergenic
TGTACTAGATGTGTTCGTGG+AGG 0.754728 7_3:+76994268 Msa1125460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAAAATTTAGAAATAT+TGG - chr7_3:76992786-76992805 None:intergenic 10.0%
!! TAACAAATATAAAGATTAAT+GGG - chr7_3:76993267-76993286 None:intergenic 10.0%
!!! TTTGTAATATTTTGATTCAT+GGG + chr7_3:76990365-76990384 Msa1125460:five_prime_UTR 15.0%
!!! ACTTTTAATACTTTGATTAA+AGG + chr7_3:76990574-76990593 Msa1125460:five_prime_UTR 15.0%
!!! CTTTTAATACTTTGATTAAA+GGG + chr7_3:76990575-76990594 Msa1125460:five_prime_UTR 15.0%
!! AAACAATATAAGATTTAACT+TGG + chr7_3:76991291-76991310 Msa1125460:five_prime_UTR 15.0%
!! AATAAACATATGAATCATTA+AGG - chr7_3:76993040-76993059 None:intergenic 15.0%
!!! ATTCATATGTTTATTCTTTT+GGG + chr7_3:76993045-76993064 Msa1125460:intron 15.0%
!! GTAACAAATATAAAGATTAA+TGG - chr7_3:76993268-76993287 None:intergenic 15.0%
!!! TTATATTTGTTACTTCATTT+TGG + chr7_3:76993275-76993294 Msa1125460:intron 15.0%
!! GAAGAAAAAAAAAATCTATT+TGG - chr7_3:76993852-76993871 None:intergenic 15.0%
!! CATAGTTAAAAATGTAATTA+TGG - chr7_3:76994043-76994062 None:intergenic 15.0%
!!! GTTTGTAATATTTTGATTCA+TGG + chr7_3:76990364-76990383 Msa1125460:five_prime_UTR 20.0%
!!! TTTTGAGTTTTATAATCAGA+TGG + chr7_3:76990417-76990436 Msa1125460:five_prime_UTR 20.0%
!! ATATTAAAAGTAAACACATC+AGG - chr7_3:76990460-76990479 None:intergenic 20.0%
!!! ACTTTTAATATCTTGATTAG+TGG + chr7_3:76990469-76990488 Msa1125460:five_prime_UTR 20.0%
!!! TTTTAAATTTAGTTGTGCAT+TGG + chr7_3:76990504-76990523 Msa1125460:five_prime_UTR 20.0%
!! GTATTAAAAGTAACAACATT+TGG - chr7_3:76990565-76990584 None:intergenic 20.0%
!! TTGTAAATATTTCCATTTCA+TGG + chr7_3:76991529-76991548 Msa1125460:intron 20.0%
!! AAACAACTAAAATCAACATA+AGG + chr7_3:76991882-76991901 Msa1125460:intron 20.0%
!! GCTATTATTTAAAAATCTGT+TGG - chr7_3:76992213-76992232 None:intergenic 20.0%
!! TATAAGCTTATAAGCAATAA+GGG + chr7_3:76992319-76992338 Msa1125460:intron 20.0%
!!! GAATTTTTGATGTATACAAT+TGG + chr7_3:76992373-76992392 Msa1125460:intron 20.0%
!! AAAATTTAGAAATATTGGTG+TGG - chr7_3:76992781-76992800 None:intergenic 20.0%
!!! TTTCTAGTTAGTACTTAAAA+AGG + chr7_3:76992804-76992823 Msa1125460:intron 20.0%
!! TATGATATTACCAAAAAGAA+TGG - chr7_3:76992917-76992936 None:intergenic 20.0%
!!! GATTCATATGTTTATTCTTT+TGG + chr7_3:76993044-76993063 Msa1125460:intron 20.0%
!!! TTCATATGTTTATTCTTTTG+GGG + chr7_3:76993046-76993065 Msa1125460:intron 20.0%
!!! ATGTCTTTTTCTCATTTTTT+TGG + chr7_3:76993796-76993815 Msa1125460:intron 20.0%
!!! TGTCTTTTTCTCATTTTTTT+GGG + chr7_3:76993797-76993816 Msa1125460:intron 20.0%
!! AAACAAAAACTATTTCAAAC+AGG + chr7_3:76993920-76993939 Msa1125460:intron 20.0%
!! TTAAAATCAACAATTTGTGT+AGG + chr7_3:76994122-76994141 Msa1125460:intron 20.0%
!! GTTTTATAATCAGATGGTTA+AGG + chr7_3:76990423-76990442 Msa1125460:five_prime_UTR 25.0%
! TTTGATGAAATGAGGAAAAT+GGG + chr7_3:76990532-76990551 Msa1125460:five_prime_UTR 25.0%
! TTTGATTAAAGGGTTGTTTA+GGG + chr7_3:76990585-76990604 Msa1125460:five_prime_UTR 25.0%
! GTTTATGAGATGATTGAATT+GGG + chr7_3:76990637-76990656 Msa1125460:five_prime_UTR 25.0%
! TTTATGAGATGATTGAATTG+GGG + chr7_3:76990638-76990657 Msa1125460:five_prime_UTR 25.0%
! ACAAAATAATCATACCCTTT+AGG - chr7_3:76990775-76990794 None:intergenic 25.0%
!!! AGGGTATGATTATTTTGTTT+TGG + chr7_3:76990777-76990796 Msa1125460:five_prime_UTR 25.0%
!!! GTATGATTATTTTGTTTTGG+TGG + chr7_3:76990780-76990799 Msa1125460:five_prime_UTR 25.0%
!! AATTTTATAAGTCATGGCAT+CGG - chr7_3:76991094-76991113 None:intergenic 25.0%
!! AACCAGAATTTTATAAGTCA+TGG - chr7_3:76991100-76991119 None:intergenic 25.0%
! GTAAATGAAATGCTTGATAA+GGG + chr7_3:76991165-76991184 Msa1125460:five_prime_UTR 25.0%
! TAAATGAAATGCTTGATAAG+GGG + chr7_3:76991166-76991185 Msa1125460:five_prime_UTR 25.0%
! TTATTATATGAAGCAAGATC+AGG - chr7_3:76991198-76991217 None:intergenic 25.0%
!! TGCTTCATATAATAAGTTGA+TGG + chr7_3:76991203-76991222 Msa1125460:five_prime_UTR 25.0%
!!! TCATATAATAAGTTGATGGA+TGG + chr7_3:76991207-76991226 Msa1125460:five_prime_UTR 25.0%
!! AAATGTTACAATGAAGGTAT+GGG - chr7_3:76991648-76991667 None:intergenic 25.0%
! AAAATGTTACAATGAAGGTA+TGG - chr7_3:76991649-76991668 None:intergenic 25.0%
! ACATGAAAATGTTACAATGA+AGG - chr7_3:76991654-76991673 None:intergenic 25.0%
! AACTAATCACATCAAATTCT+AGG - chr7_3:76991826-76991845 None:intergenic 25.0%
! TGTACATTTATAAGCAACAA+TGG - chr7_3:76991930-76991949 None:intergenic 25.0%
! TTTAAATAATAGCAGCTTCT+AGG + chr7_3:76992220-76992239 Msa1125460:intron 25.0%
! TTAAATAATAGCAGCTTCTA+GGG + chr7_3:76992221-76992240 Msa1125460:intron 25.0%
! CTTATTGCTTATAAGCTTAT+AGG - chr7_3:76992320-76992339 None:intergenic 25.0%
! CTATAAGCTTATAAGCAATA+AGG + chr7_3:76992318-76992337 Msa1125460:intron 25.0%
! ATAAGCTTATAAGCAATAAG+GGG + chr7_3:76992320-76992339 Msa1125460:intron 25.0%
!!! ACACATGTATTGTTTAGTTT+TGG + chr7_3:76992703-76992722 Msa1125460:intron 25.0%
! TGGTAATATCATATCTTCTA+TGG + chr7_3:76992924-76992943 Msa1125460:intron 25.0%
!!! AAATATTTTAGACTGAAGGA+TGG - chr7_3:76993072-76993091 None:intergenic 25.0%
!!! CTTCAAATATTTTAGACTGA+AGG - chr7_3:76993076-76993095 None:intergenic 25.0%
! TAGAATGAACACATTAAGTA+GGG - chr7_3:76993385-76993404 None:intergenic 25.0%
!! GAAAAATAAAAGCACATTGA+AGG - chr7_3:76993477-76993496 None:intergenic 25.0%
! TGCAATACAATTACTTTCTT+TGG + chr7_3:76994069-76994088 Msa1125460:intron 25.0%
!! CATGTCAATTTTCGTTTTTC+TGG - chr7_3:76989813-76989832 None:intergenic 30.0%
TGAATTGCAAAACGGAAAAT+GGG - chr7_3:76990256-76990275 None:intergenic 30.0%
AGTAAGACTGAATTGCAAAA+CGG - chr7_3:76990264-76990283 None:intergenic 30.0%
TTGCATTTAATGTTATGCGT+AGG + chr7_3:76990314-76990333 Msa1125460:five_prime_UTR 30.0%
ATATTACAAACCGAAACACT+CGG - chr7_3:76990355-76990374 None:intergenic 30.0%
!! ATTCATGGGTTTGTTAAATC+TGG + chr7_3:76990379-76990398 Msa1125460:five_prime_UTR 30.0%
ATAATCAGATGGTTAAGGAT+AGG + chr7_3:76990428-76990447 Msa1125460:five_prime_UTR 30.0%
TCTTGATTAGTGGTTATTGT+AGG + chr7_3:76990479-76990498 Msa1125460:five_prime_UTR 30.0%
CTTGATTAGTGGTTATTGTA+GGG + chr7_3:76990480-76990499 Msa1125460:five_prime_UTR 30.0%
GTTTGATGAAATGAGGAAAA+TGG + chr7_3:76990531-76990550 Msa1125460:five_prime_UTR 30.0%
TTGATGAAATGAGGAAAATG+GGG + chr7_3:76990533-76990552 Msa1125460:five_prime_UTR 30.0%
CTTTGATTAAAGGGTTGTTT+AGG + chr7_3:76990584-76990603 Msa1125460:five_prime_UTR 30.0%
GGTTTATGAGATGATTGAAT+TGG + chr7_3:76990636-76990655 Msa1125460:five_prime_UTR 30.0%
! TTTTGGTGGAAATTTTGTGT+GGG + chr7_3:76990794-76990813 Msa1125460:five_prime_UTR 30.0%
ACAATACAAGAAATCAAGCT+AGG - chr7_3:76990880-76990899 None:intergenic 30.0%
TCTTGTATTGTGATGATTGA+TGG + chr7_3:76990889-76990908 Msa1125460:five_prime_UTR 30.0%
GGTTGAAAAAATGCTTAAAG+AGG + chr7_3:76990951-76990970 Msa1125460:five_prime_UTR 30.0%
TGAAAAAATGCTTAAAGAGG+AGG + chr7_3:76990954-76990973 Msa1125460:five_prime_UTR 30.0%
GAAAAAATGCTTAAAGAGGA+GGG + chr7_3:76990955-76990974 Msa1125460:five_prime_UTR 30.0%
! ATTTTATAAGTCATGGCATC+GGG - chr7_3:76991093-76991112 None:intergenic 30.0%
TGCCATGACTTATAAAATTC+TGG + chr7_3:76991095-76991114 Msa1125460:five_prime_UTR 30.0%
! ACTTATAAAATTCTGGTTGC+TGG + chr7_3:76991102-76991121 Msa1125460:five_prime_UTR 30.0%
! CTTATAAAATTCTGGTTGCT+GGG + chr7_3:76991103-76991122 Msa1125460:five_prime_UTR 30.0%
GGTAAATGAAATGCTTGATA+AGG + chr7_3:76991164-76991183 Msa1125460:five_prime_UTR 30.0%
CATTATCAAGTGAACAAGAT+TGG + chr7_3:76991255-76991274 Msa1125460:five_prime_UTR 30.0%
! TTGGTTGTCAAACTTTGTTT+GGG + chr7_3:76991310-76991329 Msa1125460:five_prime_UTR 30.0%
TGATATCTTGTAACTCACAA+AGG - chr7_3:76991580-76991599 None:intergenic 30.0%
CTTATCCTCTACTATAGAAA+TGG + chr7_3:76992422-76992441 Msa1125460:intron 30.0%
GTGATTGATCGTTACTAAAT+AGG + chr7_3:76992475-76992494 Msa1125460:intron 30.0%
ATGAAGTATGACTATACCTT+AGG + chr7_3:76992663-76992682 Msa1125460:intron 30.0%
TGAAAAAATGCATATGCCTA+AGG - chr7_3:76992682-76992701 None:intergenic 30.0%
! CATCTCAATGCTAGTTTAAT+GGG + chr7_3:76992732-76992751 Msa1125460:intron 30.0%
ATTTAGAAATATTGGTGTGG+TGG - chr7_3:76992778-76992797 None:intergenic 30.0%
ATAAATGAGGCTACATATAC+TGG - chr7_3:76992894-76992913 None:intergenic 30.0%
CCAAAAAGAATGGATAAATG+AGG - chr7_3:76992907-76992926 None:intergenic 30.0%
! CCTCATTTATCCATTCTTTT+TGG + chr7_3:76992904-76992923 Msa1125460:intron 30.0%
AGACAAAATCTTAGAGGATA+TGG - chr7_3:76993008-76993027 None:intergenic 30.0%
!!! TCCTCTAAGATTTTGTCTAT+TGG + chr7_3:76993010-76993029 Msa1125460:intron 30.0%
GTTTCAGATATTGACACTAT+GGG - chr7_3:76993122-76993141 None:intergenic 30.0%
TGTTTCAGATATTGACACTA+TGG - chr7_3:76993123-76993142 None:intergenic 30.0%
!! TACTTCATTTTGGCATAAGT+TGG + chr7_3:76993285-76993304 Msa1125460:intron 30.0%
TTCATCATTCATTCTTGCAA+TGG + chr7_3:76993310-76993329 Msa1125460:intron 30.0%
TGATTGTTGATCCAAAGTAA+AGG - chr7_3:76993341-76993360 None:intergenic 30.0%
CTAGAATGAACACATTAAGT+AGG - chr7_3:76993386-76993405 None:intergenic 30.0%
TTACTTCCACACTGAATTAT+GGG - chr7_3:76993438-76993457 None:intergenic 30.0%
TTTACTTCCACACTGAATTA+TGG - chr7_3:76993439-76993458 None:intergenic 30.0%
TTTAGACTGAGTTTACTTTG+TGG + chr7_3:76993516-76993535 Msa1125460:intron 30.0%
GTTTCTATCGTTAGTTAGTT+TGG - chr7_3:76993623-76993642 None:intergenic 30.0%
ACTAACGATAGAAACATTTG+AGG + chr7_3:76993628-76993647 Msa1125460:intron 30.0%
!! TTAACTCATTGATTTGTCGT+TGG + chr7_3:76994164-76994183 Msa1125460:intron 30.0%
AAGATGCTTATTCAAAAGTC+AGG + chr7_3:76994350-76994369 Msa1125460:CDS 30.0%
!!! GGTGGTTTTGTTATTGGATT+TGG - chr7_3:76989854-76989873 None:intergenic 35.0%
CTGAATTGCAAAACGGAAAA+TGG - chr7_3:76990257-76990276 None:intergenic 35.0%
GTTATGCGTAGGTTAATTGA+TGG + chr7_3:76990325-76990344 Msa1125460:five_prime_UTR 35.0%
TGGAGATGTTTGATGAAATG+AGG + chr7_3:76990524-76990543 Msa1125460:five_prime_UTR 35.0%
! TGATGTTACCTGTGAGATTT+TGG + chr7_3:76990672-76990691 Msa1125460:five_prime_UTR 35.0%
!! GTTTTGGTGGAAATTTTGTG+TGG + chr7_3:76990793-76990812 Msa1125460:five_prime_UTR 35.0%
TGGAGGTTATTTATGAGTTG+TGG + chr7_3:76990839-76990858 Msa1125460:five_prime_UTR 35.0%
ATTTATGAGTTGTGGAGCAA+AGG + chr7_3:76990847-76990866 Msa1125460:five_prime_UTR 35.0%
! ATTGATGGTTTGAGAGGATT+GGG + chr7_3:76990904-76990923 Msa1125460:five_prime_UTR 35.0%
TCTCAACCTATTTGCATCTT+CGG - chr7_3:76991043-76991062 None:intergenic 35.0%
AGATTACTTGCTTCAAGCAA+AGG + chr7_3:76991060-76991079 Msa1125460:five_prime_UTR 35.0%
TATATAATTGCCAACACCGT+AGG + chr7_3:76991232-76991251 Msa1125460:five_prime_UTR 35.0%
!! TGTTCACTTGATAATGCCTA+CGG - chr7_3:76991251-76991270 None:intergenic 35.0%
CTTGGTTGTCAAACTTTGTT+TGG + chr7_3:76991309-76991328 Msa1125460:five_prime_UTR 35.0%
! TGTTTGGGATAAGATTGTTG+AGG + chr7_3:76991325-76991344 Msa1125460:five_prime_UTR 35.0%
! CTGAATTTTCAGCTGATTAC+AGG - chr7_3:76991368-76991387 None:intergenic 35.0%
TTACAATGTTCACTAGCATC+AGG - chr7_3:76991515-76991534 None:intergenic 35.0%
! TGACTGTGCAAATTTTGTGA+TGG + chr7_3:76991966-76991985 Msa1125460:intron 35.0%
TCTGACTCTACTATTGTGTT+AGG + chr7_3:76992096-76992115 Msa1125460:intron 35.0%
CTACTATTGTGTTAGGATCA+TGG + chr7_3:76992103-76992122 Msa1125460:intron 35.0%
TATTGTGTTAGGATCATGGA+AGG + chr7_3:76992107-76992126 Msa1125460:intron 35.0%
ATTGTGTTAGGATCATGGAA+GGG + chr7_3:76992108-76992127 Msa1125460:intron 35.0%
TTTCCATGGTCTGAAGAAAA+AGG + chr7_3:76992351-76992370 Msa1125460:intron 35.0%
! ATTCCTTTTTCTTCAGACCA+TGG - chr7_3:76992357-76992376 None:intergenic 35.0%
CCTTACCATTTCTATAGTAG+AGG - chr7_3:76992430-76992449 None:intergenic 35.0%
CCTCTACTATAGAAATGGTA+AGG + chr7_3:76992427-76992446 Msa1125460:intron 35.0%
! GCATCTCAATGCTAGTTTAA+TGG + chr7_3:76992731-76992750 Msa1125460:intron 35.0%
! GATCTGAGAGTATATGATGT+TGG - chr7_3:76992856-76992875 None:intergenic 35.0%
GCCAATAGACAAAATCTTAG+AGG - chr7_3:76993014-76993033 None:intergenic 35.0%
TCAGACTGAAACCACTTATT+TGG - chr7_3:76993199-76993218 None:intergenic 35.0%
! ATAAAAGCACATTGAAGGTG+CGG - chr7_3:76993472-76993491 None:intergenic 35.0%
! GAAACACAAATGCTGTGTTT+TGG + chr7_3:76993546-76993565 Msa1125460:intron 35.0%
! GTTTTATGTGAGTAGGTTTC+AGG + chr7_3:76993949-76993968 Msa1125460:intron 35.0%
! TGATTTGTCGTTGGAATTTC+AGG + chr7_3:76994173-76994192 Msa1125460:intron 35.0%
GATTTGTCGTTGGAATTTCA+GGG + chr7_3:76994174-76994193 Msa1125460:intron 35.0%
ATTTGTCGTTGGAATTTCAG+GGG + chr7_3:76994175-76994194 Msa1125460:intron 35.0%
TACATTCAAAGAAAGCAGTG+CGG - chr7_3:76994252-76994271 None:intergenic 35.0%
! TTTGTTATACTTGCGCTTGT+GGG - chr7_3:76994332-76994351 None:intergenic 35.0%
AGTAACATACATAAGACCCA+TGG - chr7_3:76994378-76994397 None:intergenic 35.0%
!! TTTCGTTTTTCTGGCGTGAA+TGG - chr7_3:76989804-76989823 None:intergenic 40.0%
AAGAGTGATGTGATTGTTGG+TGG - chr7_3:76989905-76989924 None:intergenic 40.0%
GAGTTTGGATTTGAGGAAGT+GGG - chr7_3:76990020-76990039 None:intergenic 40.0%
! TGCAAAACGGAAAATGGGTT+CGG - chr7_3:76990251-76990270 None:intergenic 40.0%
TGATGGAAAACCGAGTGTTT+CGG + chr7_3:76990342-76990361 Msa1125460:five_prime_UTR 40.0%
AAGGGTTGTTTAGGGAATGT+AGG + chr7_3:76990593-76990612 Msa1125460:five_prime_UTR 40.0%
AGGGAATGTAGGATTGATGA+AGG + chr7_3:76990604-76990623 Msa1125460:five_prime_UTR 40.0%
GGGAATGTAGGATTGATGAA+GGG + chr7_3:76990605-76990624 Msa1125460:five_prime_UTR 40.0%
TGTAGGATTGATGAAGGGAT+TGG + chr7_3:76990610-76990629 Msa1125460:five_prime_UTR 40.0%
GTAGGATTGATGAAGGGATT+GGG + chr7_3:76990611-76990630 Msa1125460:five_prime_UTR 40.0%
TCACAGGTAACATCAGAAAG+TGG - chr7_3:76990667-76990686 None:intergenic 40.0%
!!! ACCTGTGAGATTTTGGTTGA+CGG + chr7_3:76990679-76990698 Msa1125460:five_prime_UTR 40.0%
! TAAGGAAGGGAAGGTTTTAC+AGG + chr7_3:76990708-76990727 Msa1125460:five_prime_UTR 40.0%
! TTGATGGAGTTTTCGAAGAG+AGG + chr7_3:76990742-76990761 Msa1125460:five_prime_UTR 40.0%
! TGATGGAGTTTTCGAAGAGA+GGG + chr7_3:76990743-76990762 Msa1125460:five_prime_UTR 40.0%
! GTGGAAATTTTGTGTGGGAA+AGG + chr7_3:76990799-76990818 Msa1125460:five_prime_UTR 40.0%
! AATTTTGTGTGGGAAAGGAG+AGG + chr7_3:76990804-76990823 Msa1125460:five_prime_UTR 40.0%
! GTGATGATTGATGGTTTGAG+AGG + chr7_3:76990898-76990917 Msa1125460:five_prime_UTR 40.0%
! GATTGATGGTTTGAGAGGAT+TGG + chr7_3:76990903-76990922 Msa1125460:five_prime_UTR 40.0%
! TTGATGGTTTGAGAGGATTG+GGG + chr7_3:76990905-76990924 Msa1125460:five_prime_UTR 40.0%
GATTGAAGAGGCAATGAGAT+TGG + chr7_3:76990930-76990949 Msa1125460:five_prime_UTR 40.0%
AATGCTTAAAGAGGAGGGTT+TGG + chr7_3:76990960-76990979 Msa1125460:five_prime_UTR 40.0%
CCTTCAAGATCTTTGTGATG+CGG + chr7_3:76991011-76991030 Msa1125460:five_prime_UTR 40.0%
CTTCAAGATCTTTGTGATGC+GGG + chr7_3:76991012-76991031 Msa1125460:five_prime_UTR 40.0%
ATCAAGTGAACAAGATTGGC+AGG + chr7_3:76991259-76991278 Msa1125460:five_prime_UTR 40.0%
! TTTTGCGCAACGATGAAGAT+AGG + chr7_3:76991405-76991424 Msa1125460:five_prime_UTR 40.0%
! TTGCAAGTCCACTTTGAAGA+TGG + chr7_3:76991434-76991453 Msa1125460:five_prime_UTR 40.0%
! AAGTCCACTTTGAAGATGGT+TGG + chr7_3:76991438-76991457 Msa1125460:intron 40.0%
GTGTATCAGTCTCCATGAAA+TGG - chr7_3:76991544-76991563 None:intergenic 40.0%
TGTAACTCACAAAGGAGACA+CGG - chr7_3:76991572-76991591 None:intergenic 40.0%
TTATCAACGGTTTGTGGTAG+CGG - chr7_3:76991729-76991748 None:intergenic 40.0%
! CTACCACAAACCGTTGATAA+AGG + chr7_3:76991729-76991748 Msa1125460:intron 40.0%
! TCATTTTGTCGTCACCTTAC+AGG + chr7_3:76992150-76992169 Msa1125460:intron 40.0%
TAAGTACATGTTGAGCTCCA+AGG - chr7_3:76992180-76992199 None:intergenic 40.0%
!!! AAGGGGAGTTTTGATTTCCA+TGG + chr7_3:76992337-76992356 Msa1125460:intron 40.0%
! TGAAAGAGTATGAAGACCAC+TGG + chr7_3:76992508-76992527 Msa1125460:exon 40.0%
ATACCTCACTTCCACTTGAA+TGG + chr7_3:76992615-76992634 Msa1125460:intron 40.0%
TACCTCACTTCCACTTGAAT+GGG + chr7_3:76992616-76992635 Msa1125460:intron 40.0%
TCAAAGAGAACCCATTCAAG+TGG - chr7_3:76992629-76992648 None:intergenic 40.0%
AACGACTCTCACCAAATAAG+TGG + chr7_3:76993185-76993204 Msa1125460:intron 40.0%
CAATGGGAAAGAATGAACTG+TGG - chr7_3:76993231-76993250 None:intergenic 40.0%
CACAGTTCATTCTTTCCCAT+TGG + chr7_3:76993229-76993248 Msa1125460:intron 40.0%
CAATGGCTACACCTTTACTT+TGG + chr7_3:76993327-76993346 Msa1125460:intron 40.0%
GAATTATGGGAAGTTCAGTG+TGG - chr7_3:76993425-76993444 None:intergenic 40.0%
GAACTTCCCATAATTCAGTG+TGG + chr7_3:76993429-76993448 Msa1125460:intron 40.0%
TGCTTGAGAACTGAACTGTT+TGG - chr7_3:76993757-76993776 None:intergenic 40.0%
!!! GCACGTAGTTTTATGTGAGT+AGG + chr7_3:76993942-76993961 Msa1125460:intron 40.0%
TCACCTTTCATCTCTCTTTC+TGG + chr7_3:76994093-76994112 Msa1125460:intron 40.0%
TGACCAGAAAGAGAGATGAA+AGG - chr7_3:76994099-76994118 None:intergenic 40.0%
GAATGTACTAGATGTGTTCG+TGG + chr7_3:76994265-76994284 Msa1125460:CDS 40.0%
! CTTTGTTATACTTGCGCTTG+TGG - chr7_3:76994333-76994352 None:intergenic 40.0%
TATTCAAAAGTCAGGCTCCA+TGG + chr7_3:76994358-76994377 Msa1125460:CDS 40.0%
ATTCAAAAGTCAGGCTCCAT+GGG + chr7_3:76994359-76994378 Msa1125460:CDS 40.0%
!!! GGTGGTGGTGGTTTTGTTAT+TGG - chr7_3:76989860-76989879 None:intergenic 45.0%
! AGTGATGTGATTGTTGGTGG+TGG - chr7_3:76989902-76989921 None:intergenic 45.0%
GGGAAGAGTGATGTGATTGT+TGG - chr7_3:76989908-76989927 None:intergenic 45.0%
GTTGAGGAAATGGAGGAAGT+GGG - chr7_3:76989960-76989979 None:intergenic 45.0%
!! GGATTTGAGGAAGTGGGTTA+GGG - chr7_3:76990014-76990033 None:intergenic 45.0%
! TGGATTTGAGGAAGTGGGTT+AGG - chr7_3:76990015-76990034 None:intergenic 45.0%
GGAGTTTGGATTTGAGGAAG+TGG - chr7_3:76990021-76990040 None:intergenic 45.0%
AGTCGAAGTGGGTGAAAGAA+GGG - chr7_3:76990051-76990070 None:intergenic 45.0%
AAGTCGAAGTGGGTGAAAGA+AGG - chr7_3:76990052-76990071 None:intergenic 45.0%
GAAGAGATGGAAGTCGAAGT+GGG - chr7_3:76990062-76990081 None:intergenic 45.0%
AGAAGAGATGGAAGTCGAAG+TGG - chr7_3:76990063-76990082 None:intergenic 45.0%
TCGACTTCCATCTCTTCTCT+TGG + chr7_3:76990065-76990084 Msa1125460:five_prime_UTR 45.0%
CGACTTCCATCTCTTCTCTT+GGG + chr7_3:76990066-76990085 Msa1125460:five_prime_UTR 45.0%
!! GTTGTGAGAGAAGGTGTCAA+GGG - chr7_3:76990098-76990117 None:intergenic 45.0%
! AGAAGATGGCTTGAGAGCAT+TGG - chr7_3:76990216-76990235 None:intergenic 45.0%
! GGAAAATGGGTTCGGTTTGT+GGG - chr7_3:76990243-76990262 None:intergenic 45.0%
GATTGATGAAGGGATTGGGA+TGG + chr7_3:76990615-76990634 Msa1125460:five_prime_UTR 45.0%
!!! CCTGTGAGATTTTGGTTGAC+GGG + chr7_3:76990680-76990699 Msa1125460:five_prime_UTR 45.0%
!! TTTGGTTGACGGGCTTTGTA+AGG + chr7_3:76990690-76990709 Msa1125460:five_prime_UTR 45.0%
!! TTGACGGGCTTTGTAAGGAA+GGG + chr7_3:76990695-76990714 Msa1125460:five_prime_UTR 45.0%
!! ACAGGCGTGTGATTTGTTGA+TGG + chr7_3:76990726-76990745 Msa1125460:five_prime_UTR 45.0%
! GATGGAGTTTTCGAAGAGAG+GGG + chr7_3:76990744-76990763 Msa1125460:five_prime_UTR 45.0%
! AAGAGAGGGGTTTTGCCTAA+AGG + chr7_3:76990757-76990776 Msa1125460:five_prime_UTR 45.0%
! AGAGAGGGGTTTTGCCTAAA+GGG + chr7_3:76990758-76990777 Msa1125460:five_prime_UTR 45.0%
! TGGGAAAGGAGAGGCTTTTA+AGG + chr7_3:76990813-76990832 Msa1125460:five_prime_UTR 45.0%
!!! AGGAGAGGCTTTTAAGGCTT+TGG + chr7_3:76990819-76990838 Msa1125460:five_prime_UTR 45.0%
!!! AGAGGCTTTTAAGGCTTTGG+AGG + chr7_3:76990822-76990841 Msa1125460:five_prime_UTR 45.0%
AGGATTGGGGAAGATTGAAG+AGG + chr7_3:76990918-76990937 Msa1125460:five_prime_UTR 45.0%
CCGCATCACAAAGATCTTGA+AGG - chr7_3:76991014-76991033 None:intergenic 45.0%
AAGATCTTTGTGATGCGGGA+AGG + chr7_3:76991016-76991035 Msa1125460:five_prime_UTR 45.0%
GAAGGACCGAAGATGCAAAT+AGG + chr7_3:76991034-76991053 Msa1125460:five_prime_UTR 45.0%
! ATTCTGGTTGCTGGGTATAG+AGG + chr7_3:76991111-76991130 Msa1125460:five_prime_UTR 45.0%
TCAAGCAGAAGGAGAGTTAG+TGG + chr7_3:76991143-76991162 Msa1125460:five_prime_UTR 45.0%
!! CTTGATAATGCCTACGGTGT+TGG - chr7_3:76991245-76991264 None:intergenic 45.0%
AGCACCAACCATCTTCAAAG+TGG - chr7_3:76991445-76991464 None:intergenic 45.0%
! TGGTTGGTGCTCTAAACTCA+CGG + chr7_3:76991454-76991473 Msa1125460:intron 45.0%
TATCAACGGTTTGTGGTAGC+GGG - chr7_3:76991728-76991747 None:intergenic 45.0%
TGGCCTTTATCAACGGTTTG+TGG - chr7_3:76991735-76991754 None:intergenic 45.0%
! ACAAACCGTTGATAAAGGCC+AGG + chr7_3:76991734-76991753 Msa1125460:intron 45.0%
! CAAACCGTTGATAAAGGCCA+GGG + chr7_3:76991735-76991754 Msa1125460:intron 45.0%
! AAACCGTTGATAAAGGCCAG+GGG + chr7_3:76991736-76991755 Msa1125460:intron 45.0%
TAAAGGCCAGGGGTAGAATT+TGG + chr7_3:76991746-76991765 Msa1125460:intron 45.0%
TGGTGTCTCCTTAATCTCTG+CGG + chr7_3:76991766-76991785 Msa1125460:intron 45.0%
ACATGTGACCGCAGAGATTA+AGG - chr7_3:76991777-76991796 None:intergenic 45.0%
TTAATCTCTGCGGTCACATG+TGG + chr7_3:76991776-76991795 Msa1125460:intron 45.0%
! GAATTGTAGATGATGGCCAG+TGG - chr7_3:76992527-76992546 None:intergenic 45.0%
GAGCAGCGAATTGTAGATGA+TGG - chr7_3:76992534-76992553 None:intergenic 45.0%
TATGTTACCTGTGCAGCAGA+GGG - chr7_3:76992598-76992617 None:intergenic 45.0%
AACCCATTCAAGTGGAAGTG+AGG - chr7_3:76992621-76992640 None:intergenic 45.0%
GGCTACATATACTGGTGTGA+TGG - chr7_3:76992886-76992905 None:intergenic 45.0%
GGGAGTGAATGACAACCAAT+GGG - chr7_3:76993247-76993266 None:intergenic 45.0%
TGGGAGTGAATGACAACCAA+TGG - chr7_3:76993248-76993267 None:intergenic 45.0%
TGTTGCCTGTGTATCATCAC+TGG + chr7_3:76994213-76994232 Msa1125460:intron 45.0%
GTTGCCTGTGTATCATCACT+GGG + chr7_3:76994214-76994233 Msa1125460:intron 45.0%
TTGCCTGTGTATCATCACTG+GGG + chr7_3:76994215-76994234 Msa1125460:intron 45.0%
TGTACTAGATGTGTTCGTGG+AGG + chr7_3:76994268-76994287 Msa1125460:CDS 45.0%
TAGATGTGTTCGTGGAGGAA+TGG + chr7_3:76994273-76994292 Msa1125460:CDS 45.0%
!! GATGTGATTGTTGGTGGTGG+TGG - chr7_3:76989899-76989918 None:intergenic 50.0%
! AAGTGGGTGTAGTGTTGGGT+GGG - chr7_3:76989944-76989963 None:intergenic 50.0%
GAGGAAGTGGGTGTAGTGTT+GGG - chr7_3:76989948-76989967 None:intergenic 50.0%
GGTTGAGGAAATGGAGGAAG+TGG - chr7_3:76989961-76989980 None:intergenic 50.0%
! TGAGGTGGTGGTTGAGGAAA+TGG - chr7_3:76989970-76989989 None:intergenic 50.0%
GTTAGGGTTTGTGGGGTGAA+GGG - chr7_3:76989998-76990017 None:intergenic 50.0%
!! GAAGTGGGTTAGGGTTTGTG+GGG - chr7_3:76990005-76990024 None:intergenic 50.0%
!! GGAAGTGGGTTAGGGTTTGT+GGG - chr7_3:76990006-76990025 None:intergenic 50.0%
!! AGGAAGTGGGTTAGGGTTTG+TGG - chr7_3:76990007-76990026 None:intergenic 50.0%
!! GGTGGTGGAGTTTGGATTTG+AGG - chr7_3:76990027-76990046 None:intergenic 50.0%
TGGAAGCCCAAGAGAAGAGA+TGG - chr7_3:76990075-76990094 None:intergenic 50.0%
!! GGTTGTGAGAGAAGGTGTCA+AGG - chr7_3:76990099-76990118 None:intergenic 50.0%
ACAACCACACCTCCTACGAA+TGG + chr7_3:76990113-76990132 Msa1125460:five_prime_UTR 50.0%
AGTACGTGCCATCCATTCGT+AGG - chr7_3:76990128-76990147 None:intergenic 50.0%
AGATGAAAGTGAGGAGGGTG+CGG - chr7_3:76990180-76990199 None:intergenic 50.0%
GGTGGAGATGAAAGTGAGGA+GGG - chr7_3:76990185-76990204 None:intergenic 50.0%
TGGTGGAGATGAAAGTGAGG+AGG - chr7_3:76990186-76990205 None:intergenic 50.0%
!! GGTTGGTGGAGATGAAAGTG+AGG - chr7_3:76990189-76990208 None:intergenic 50.0%
!! ATGGCTTGAGAGCATTGGCA+GGG - chr7_3:76990211-76990230 None:intergenic 50.0%
GGTTTGTGGGCAAGAGAAGA+TGG - chr7_3:76990230-76990249 None:intergenic 50.0%
! CGGAAAATGGGTTCGGTTTG+TGG - chr7_3:76990244-76990263 None:intergenic 50.0%
CCCGTCAACCAAAATCTCAC+AGG - chr7_3:76990683-76990702 None:intergenic 50.0%
!! GTTGACGGGCTTTGTAAGGA+AGG + chr7_3:76990694-76990713 Msa1125460:five_prime_UTR 50.0%
GTTGCTGGGTATAGAGGAGA+GGG + chr7_3:76991117-76991136 Msa1125460:five_prime_UTR 50.0%
GGAGAGGGAAATCAAGCAGA+AGG + chr7_3:76991132-76991151 Msa1125460:five_prime_UTR 50.0%
! CTACCCCTGGCCTTTATCAA+CGG - chr7_3:76991742-76991761 None:intergenic 50.0%
GAGACACCAAATTCTACCCC+TGG - chr7_3:76991755-76991774 None:intergenic 50.0%
GTCACCTTACAGGCTAACCT+TGG + chr7_3:76992160-76992179 Msa1125460:intron 50.0%
!! AGCTCCAAGGTTAGCCTGTA+AGG - chr7_3:76992167-76992186 None:intergenic 50.0%
AGAACCATGCACAACCGATG+AGG - chr7_3:76992563-76992582 None:intergenic 50.0%
GTATGTTACCTGTGCAGCAG+AGG - chr7_3:76992599-76992618 None:intergenic 50.0%
AGAGGATATGGCTAGACTGC+AGG - chr7_3:76992996-76993015 None:intergenic 50.0%
CTACCCCAGTGATGATACAC+AGG - chr7_3:76994221-76994240 None:intergenic 50.0%
GTGTGCTTCAATCTCCTCGA+CGG + chr7_3:76994302-76994321 Msa1125460:CDS 50.0%
TGTGCTTCAATCTCCTCGAC+GGG + chr7_3:76994303-76994322 Msa1125460:CDS 50.0%
!! TTGTTGGTGGTGGTGGTGGT+GGG - chr7_3:76989892-76989911 None:intergenic 55.0%
!! ATTGTTGGTGGTGGTGGTGG+TGG - chr7_3:76989893-76989912 None:intergenic 55.0%
!! GTGATTGTTGGTGGTGGTGG+TGG - chr7_3:76989896-76989915 None:intergenic 55.0%
! TGTTGGGTGGGGGAAAGTGT+TGG - chr7_3:76989932-76989951 None:intergenic 55.0%
! AGTGGGTGTAGTGTTGGGTG+GGG - chr7_3:76989943-76989962 None:intergenic 55.0%
! GAAGTGGGTGTAGTGTTGGG+TGG - chr7_3:76989945-76989964 None:intergenic 55.0%
GGAGGAAGTGGGTGTAGTGT+TGG - chr7_3:76989949-76989968 None:intergenic 55.0%
! GGTGGTGGTTGAGGAAATGG+AGG - chr7_3:76989967-76989986 None:intergenic 55.0%
GGTTAGGGTTTGTGGGGTGA+AGG - chr7_3:76989999-76990018 None:intergenic 55.0%
!! AGAAGGGTGGTGGTGGAGTT+TGG - chr7_3:76990035-76990054 None:intergenic 55.0%
AGTGGGTGAAAGAAGGGTGG+TGG - chr7_3:76990045-76990064 None:intergenic 55.0%
CGAAGTGGGTGAAAGAAGGG+TGG - chr7_3:76990048-76990067 None:intergenic 55.0%
!! GTGAGAGAAGGTGTCAAGGG+TGG - chr7_3:76990095-76990114 None:intergenic 55.0%
! GGAGGTGTGGTTGTGAGAGA+AGG - chr7_3:76990107-76990126 None:intergenic 55.0%
CCATCCATTCGTAGGAGGTG+TGG - chr7_3:76990120-76990139 None:intergenic 55.0%
CCACACCTCCTACGAATGGA+TGG + chr7_3:76990117-76990136 Msa1125460:five_prime_UTR 55.0%
ACGTGCCATCCATTCGTAGG+AGG - chr7_3:76990125-76990144 None:intergenic 55.0%
!! TTGAGAGCATTGGCAGGGGT+TGG - chr7_3:76990206-76990225 None:intergenic 55.0%
!! TGGCTTGAGAGCATTGGCAG+GGG - chr7_3:76990210-76990229 None:intergenic 55.0%
!! GATGGCTTGAGAGCATTGGC+AGG - chr7_3:76990212-76990231 None:intergenic 55.0%
! CGGGCTTTGTAAGGAAGGGA+AGG + chr7_3:76990699-76990718 Msa1125460:five_prime_UTR 55.0%
GGTTGCTGGGTATAGAGGAG+AGG + chr7_3:76991116-76991135 Msa1125460:five_prime_UTR 55.0%
ACCATGCACAACCGATGAGG+AGG - chr7_3:76992560-76992579 None:intergenic 55.0%
GTGCTTCAATCTCCTCGACG+GGG + chr7_3:76994304-76994323 Msa1125460:CDS 55.0%
!! GGGTTGAGGATTGGTGGTGG+TGG - chr7_3:76989872-76989891 None:intergenic 60.0%
!! GGTGGGTTGAGGATTGGTGG+TGG - chr7_3:76989875-76989894 None:intergenic 60.0%
!! GGTGGTGGGTTGAGGATTGG+TGG - chr7_3:76989878-76989897 None:intergenic 60.0%
!! GGTGGTGGTGGGTTGAGGAT+TGG - chr7_3:76989881-76989900 None:intergenic 60.0%
!! GGGTGGGGGAAAGTGTTGGA+GGG - chr7_3:76989928-76989947 None:intergenic 60.0%
!! TGGGTGGGGGAAAGTGTTGG+AGG - chr7_3:76989929-76989948 None:intergenic 60.0%
! GTGGGTGTAGTGTTGGGTGG+GGG - chr7_3:76989942-76989961 None:intergenic 60.0%
! GTGGAGTGAGGTGGTGGTTG+AGG - chr7_3:76989976-76989995 None:intergenic 60.0%
TGAAGGGTGGAGTGAGGTGG+TGG - chr7_3:76989982-76990001 None:intergenic 60.0%
AGGGTTTGTGGGGTGAAGGG+TGG - chr7_3:76989995-76990014 None:intergenic 60.0%
! GGGTGAAAGAAGGGTGGTGG+TGG - chr7_3:76990042-76990061 None:intergenic 60.0%
! TGAAAGTGAGGAGGGTGCGG+AGG - chr7_3:76990177-76990196 None:intergenic 60.0%
!! AGAGCATTGGCAGGGGTTGG+TGG - chr7_3:76990203-76990222 None:intergenic 60.0%
TGCACAACCGATGAGGAGGC+AGG - chr7_3:76992556-76992575 None:intergenic 60.0%
! GCCTCCTCATCGGTTGTGCA+TGG + chr7_3:76992556-76992575 Msa1125460:CDS 60.0%
GTTACCTGTGCAGCAGAGGG+AGG - chr7_3:76992595-76992614 None:intergenic 60.0%
!! GTGGTGGTGGTGGTGGGTTG+AGG - chr7_3:76989886-76989905 None:intergenic 65.0%
GGGTGAAGGGTGGAGTGAGG+TGG - chr7_3:76989985-76990004 None:intergenic 65.0%
GTGGGGTGAAGGGTGGAGTG+AGG - chr7_3:76989988-76990007 None:intergenic 65.0%
CGCTGCTCCTGCCTCCTCAT+CGG + chr7_3:76992546-76992565 Msa1125460:CDS 65.0%
TGCGCCTCCCTCTGCTGCAC+AGG + chr7_3:76992588-76992607 Msa1125460:CDS 70.0%
CGCTTGTGGGAACCCCGTCG+AGG - chr7_3:76994319-76994338 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 76989791 76994423 76989791 ID=Msa1125460;Name=Msa1125460
chr7_3 mRNA 76989791 76994423 76989791 ID=Msa1125460-mRNA-1;Parent=Msa1125460;Name=Msa1125460-mRNA-1;_AED=0.21;_eAED=0.28;_QI=1685|0.5|0.66|1|0.5|0.33|3|0|91
chr7_3 exon 76989791 76991455 76989791 ID=Msa1125460-mRNA-1:exon:21143;Parent=Msa1125460-mRNA-1
chr7_3 exon 76992497 76992609 76992497 ID=Msa1125460-mRNA-1:exon:21144;Parent=Msa1125460-mRNA-1
chr7_3 exon 76994241 76994423 76994241 ID=Msa1125460-mRNA-1:exon:21145;Parent=Msa1125460-mRNA-1
chr7_3 five_prime_UTR 76989791 76991455 76989791 ID=Msa1125460-mRNA-1:five_prime_utr;Parent=Msa1125460-mRNA-1
chr7_3 five_prime_UTR 76992497 76992516 76992497 ID=Msa1125460-mRNA-1:five_prime_utr;Parent=Msa1125460-mRNA-1
chr7_3 CDS 76992517 76992609 76992517 ID=Msa1125460-mRNA-1:cds;Parent=Msa1125460-mRNA-1
chr7_3 CDS 76994241 76994423 76994241 ID=Msa1125460-mRNA-1:cds;Parent=Msa1125460-mRNA-1
Gene Sequence

>Msa1125460

ATGAAGACCACTGGCCATCATCTACAATTCGCTGCTCCTGCCTCCTCATCGGTTGTGCATGGTTCTGCTGATGCGCCTCCCTCTGCTGCACAGTGCAGCTTCCGCACTGCTTTCTTTGAATGTACTAGATGTGTTCGTGGAGGAATGGAGCTGAGTGTGCTTCAATCTCCTCGACGGGGTTCCCACAAGCGCAAGTATAACAAAGATGCTTATTCAAAAGTCAGGCTCCATGGGTCTTATGTATGTTACTTGATGAGAACCAACCCTCCTAAATGA
Protein sequence

>Msa1125460

MKTTGHHLQFAAPASSSVVHGSADAPPSAAQCSFRTAFFECTRCVRGGMELSVLQSPRRGSHKRKYNKDAYSKVRLHGSYVCYLMRTNPPK*