AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1125540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 184 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAATTGCAAAACGGAAAA+TGG 0.175870 7_3:-77029545 None:intergenic
TGATGTTACCTGTGAGATTT+TGG 0.217449 7_3:+77029963 Msa1125540:five_prime_UTR
TGCCATGACTTATAAAATTC+TGG 0.240095 7_3:+77030386 Msa1125540:five_prime_UTR
CTTTGATTAAAGGGTTGTTT+AGG 0.242123 7_3:+77029875 Msa1125540:five_prime_UTR
CTTGGTTGTCAAACTTTGTT+TGG 0.266551 7_3:+77030600 Msa1125540:five_prime_UTR
AGAAGGGTGGTGGTGGAGTT+TGG 0.266647 7_3:-77029323 None:intergenic
AGGCTCCTTATCCTTCATTT+AGG 0.276315 7_3:-77033709 None:intergenic
AGGAAGTGGGTTAGGGTTTG+TGG 0.287613 7_3:-77029295 None:intergenic
TGAGGTGGTGGTTGAGGAAA+TGG 0.300350 7_3:-77029258 None:intergenic
TCGACTTCCATCTCTTCTCT+TGG 0.302493 7_3:+77029356 Msa1125540:five_prime_UTR
TGGATTTGAGGAAGTGGGTT+AGG 0.308574 7_3:-77029303 None:intergenic
TTTGATTAAAGGGTTGTTTA+GGG 0.314956 7_3:+77029876 Msa1125540:five_prime_UTR
TGAAGGGTGGAGTGAGGTGG+TGG 0.324707 7_3:-77029270 None:intergenic
TCTTGTATTGTGATGATTGA+TGG 0.325090 7_3:+77030180 Msa1125540:five_prime_UTR
GTTTGATGAAATGAGGAAAA+TGG 0.326983 7_3:+77029822 Msa1125540:five_prime_UTR
ACTTATAAAATTCTGGTTGC+TGG 0.327645 7_3:+77030393 Msa1125540:five_prime_UTR
ATTCATGGGTTTGTTAAATC+TGG 0.329318 7_3:+77029670 Msa1125540:five_prime_UTR
AGGGTTTGTGGGGTGAAGGG+TGG 0.336086 7_3:-77029283 None:intergenic
GTTTATGAGATGATTGAATT+GGG 0.336232 7_3:+77029928 Msa1125540:five_prime_UTR
GGTGGTGGGTTGAGGATTGG+TGG 0.344340 7_3:-77029166 None:intergenic
GGTTTATGAGATGATTGAAT+TGG 0.347943 7_3:+77029927 Msa1125540:five_prime_UTR
GGTTAGGGTTTGTGGGGTGA+AGG 0.353454 7_3:-77029287 None:intergenic
CGGAAAATGGGTTCGGTTTG+TGG 0.354992 7_3:-77029532 None:intergenic
GGGTGAAGGGTGGAGTGAGG+TGG 0.357494 7_3:-77029273 None:intergenic
TGCTTCATATAATAAGTTGA+TGG 0.366068 7_3:+77030494 Msa1125540:five_prime_UTR
ACAAAATAATCATACCCTTT+AGG 0.370573 7_3:-77030063 None:intergenic
GATTGAAGAGGCAATGAGAT+TGG 0.370990 7_3:+77030221 Msa1125540:five_prime_UTR
GGATTTGAGGAAGTGGGTTA+GGG 0.375479 7_3:-77029302 None:intergenic
CGACTTCCATCTCTTCTCTT+GGG 0.377757 7_3:+77029357 Msa1125540:five_prime_UTR
GGTGGTGGTGGGTTGAGGAT+TGG 0.378579 7_3:-77029169 None:intergenic
TTGAGAGCATTGGCAGGGGT+TGG 0.379413 7_3:-77029494 None:intergenic
GTAAATGAAATGCTTGATAA+GGG 0.383726 7_3:+77030456 Msa1125540:five_prime_UTR
GGAAGTGGGTTAGGGTTTGT+GGG 0.389433 7_3:-77029294 None:intergenic
GTGATTGTTGGTGGTGGTGG+TGG 0.392677 7_3:-77029184 None:intergenic
TCTTGATTAGTGGTTATTGT+AGG 0.393307 7_3:+77029770 Msa1125540:five_prime_UTR
TTTGATGAAATGAGGAAAAT+GGG 0.394625 7_3:+77029823 Msa1125540:five_prime_UTR
GAAGTGGGTGTAGTGTTGGG+TGG 0.396216 7_3:-77029233 None:intergenic
ATTGATGGTTTGAGAGGATT+GGG 0.399046 7_3:+77030195 Msa1125540:five_prime_UTR
GGGTTGAGGATTGGTGGTGG+TGG 0.401360 7_3:-77029160 None:intergenic
GGTGGTGGAGTTTGGATTTG+AGG 0.401538 7_3:-77029315 None:intergenic
AATGCTTAAAGAGGAGGGTT+TGG 0.403436 7_3:+77030251 Msa1125540:five_prime_UTR
GGTAAATGAAATGCTTGATA+AGG 0.403566 7_3:+77030455 Msa1125540:five_prime_UTR
GTTATGCGTAGGTTAATTGA+TGG 0.404197 7_3:+77029616 Msa1125540:five_prime_UTR
GTATTAAAAGTAACAACATT+TGG 0.407276 7_3:-77029853 None:intergenic
GTGGAGTGAGGTGGTGGTTG+AGG 0.409385 7_3:-77029264 None:intergenic
TGTAGGATTGATGAAGGGAT+TGG 0.411829 7_3:+77029901 Msa1125540:five_prime_UTR
TCTCAACCTATTTGCATCTT+CGG 0.413513 7_3:-77030331 None:intergenic
GTGGGTGTAGTGTTGGGTGG+GGG 0.419805 7_3:-77029230 None:intergenic
TGATGGAAAACCGAGTGTTT+CGG 0.420401 7_3:+77029633 Msa1125540:five_prime_UTR
TATCCTTCATTTAGGAGGGT+TGG 0.421718 7_3:-77033701 None:intergenic
GTTAGGGTTTGTGGGGTGAA+GGG 0.423539 7_3:-77029286 None:intergenic
GAAGGACCGAAGATGCAAAT+AGG 0.425552 7_3:+77030325 Msa1125540:five_prime_UTR
GGGTGAAAGAAGGGTGGTGG+TGG 0.427560 7_3:-77029330 None:intergenic
TGGAGGTTATTTATGAGTTG+TGG 0.433505 7_3:+77030130 Msa1125540:five_prime_UTR
CTCCTTATCCTTCATTTAGG+AGG 0.435154 7_3:-77033706 None:intergenic
TGCAAAACGGAAAATGGGTT+CGG 0.437354 7_3:-77029539 None:intergenic
GGAGTTTGGATTTGAGGAAG+TGG 0.439753 7_3:-77029309 None:intergenic
AAGGGTTGTTTAGGGAATGT+AGG 0.439768 7_3:+77029884 Msa1125540:five_prime_UTR
GGTGGGTTGAGGATTGGTGG+TGG 0.440646 7_3:-77029163 None:intergenic
TTGGTTGTCAAACTTTGTTT+GGG 0.441770 7_3:+77030601 Msa1125540:five_prime_UTR
CCGCATCACAAAGATCTTGA+AGG 0.442050 7_3:-77030302 None:intergenic
AGGGAATGTAGGATTGATGA+AGG 0.442876 7_3:+77029895 Msa1125540:five_prime_UTR
GGAAAATGGGTTCGGTTTGT+GGG 0.443096 7_3:-77029531 None:intergenic
CGCTGCTCCTGCCTCCTCAT+CGG 0.446286 7_3:+77031840 Msa1125540:CDS
AAGTGGGTGTAGTGTTGGGT+GGG 0.446355 7_3:-77029232 None:intergenic
CTTGATTAGTGGTTATTGTA+GGG 0.448286 7_3:+77029771 Msa1125540:five_prime_UTR
TCAAGCAGAAGGAGAGTTAG+TGG 0.449600 7_3:+77030434 Msa1125540:five_prime_UTR
TGTGCTTCAATCTCCTCGAC+GGG 0.450933 7_3:+77033597 Msa1125540:CDS
CTTTGTTATACTTGCGCTTG+TGG 0.451503 7_3:-77033624 None:intergenic
GATGTGATTGTTGGTGGTGG+TGG 0.451570 7_3:-77029187 None:intergenic
AGTGGGTGTAGTGTTGGGTG+GGG 0.455293 7_3:-77029231 None:intergenic
GAGGAAGTGGGTGTAGTGTT+GGG 0.455322 7_3:-77029236 None:intergenic
TTTGTTATACTTGCGCTTGT+GGG 0.456204 7_3:-77033623 None:intergenic
ATTCTGGTTGCTGGGTATAG+AGG 0.459433 7_3:+77030402 Msa1125540:five_prime_UTR
GGAGGAAGTGGGTGTAGTGT+TGG 0.461243 7_3:-77029237 None:intergenic
TTTGGTTGACGGGCTTTGTA+AGG 0.466132 7_3:+77029981 Msa1125540:five_prime_UTR
AAGATGCTTATTCAAAAGTC+AGG 0.467910 7_3:+77033644 Msa1125540:CDS
GATTGATGGTTTGAGAGGAT+TGG 0.470434 7_3:+77030194 Msa1125540:five_prime_UTR
GGTTTGTGGGCAAGAGAAGA+TGG 0.472173 7_3:-77029518 None:intergenic
CTTGATAATGCCTACGGTGT+TGG 0.475774 7_3:-77030533 None:intergenic
TGAATTGCAAAACGGAAAAT+GGG 0.476288 7_3:-77029544 None:intergenic
TCCTTATCCTTCATTTAGGA+GGG 0.478639 7_3:-77033705 None:intergenic
CTTATAAAATTCTGGTTGCT+GGG 0.479719 7_3:+77030394 Msa1125540:five_prime_UTR
CGTGAATGGACTAGCAGAGC+CGG 0.479974 7_3:-77029078 None:intergenic
AGAGCATTGGCAGGGGTTGG+TGG 0.481929 7_3:-77029491 None:intergenic
TTGCAAGTCCACTTTGAAGA+TGG 0.483089 7_3:+77030725 Msa1125540:five_prime_UTR
CTTCAAGATCTTTGTGATGC+GGG 0.483600 7_3:+77030303 Msa1125540:five_prime_UTR
AAACAATATAAGATTTAACT+TGG 0.484989 7_3:+77030582 Msa1125540:five_prime_UTR
CATTATCAAGTGAACAAGAT+TGG 0.487154 7_3:+77030546 Msa1125540:five_prime_UTR
GATGGCTTGAGAGCATTGGC+AGG 0.489023 7_3:-77029500 None:intergenic
AGATGAAAGTGAGGAGGGTG+CGG 0.490110 7_3:-77029468 None:intergenic
AGATTACTTGCTTCAAGCAA+AGG 0.493370 7_3:+77030351 Msa1125540:five_prime_UTR
AAGTCGAAGTGGGTGAAAGA+AGG 0.494239 7_3:-77029340 None:intergenic
TGAAAGTGAGGAGGGTGCGG+AGG 0.494306 7_3:-77029465 None:intergenic
ATAATCAGATGGTTAAGGAT+AGG 0.494625 7_3:+77029719 Msa1125540:five_prime_UTR
TGCACAACCGATGAGGAGGC+AGG 0.495735 7_3:-77031847 None:intergenic
ATCAAGTGAACAAGATTGGC+AGG 0.496640 7_3:+77030550 Msa1125540:five_prime_UTR
TATTCAAAAGTCAGGCTCCA+TGG 0.497611 7_3:+77033652 Msa1125540:CDS
GCCTCCTCATCGGTTGTGCA+TGG 0.498821 7_3:+77031850 Msa1125540:CDS
GTGGGGTGAAGGGTGGAGTG+AGG 0.498911 7_3:-77029276 None:intergenic
GGTTGAGGAAATGGAGGAAG+TGG 0.501724 7_3:-77029249 None:intergenic
TGGAAGCCCAAGAGAAGAGA+TGG 0.504606 7_3:-77029363 None:intergenic
ACAGGCGTGTGATTTGTTGA+TGG 0.507777 7_3:+77030017 Msa1125540:five_prime_UTR
AGAAGATGGCTTGAGAGCAT+TGG 0.508535 7_3:-77029504 None:intergenic
GTAGGATTGATGAAGGGATT+GGG 0.509129 7_3:+77029902 Msa1125540:five_prime_UTR
TGCGCCTCCCTCTGCTGCAC+AGG 0.509166 7_3:+77031882 Msa1125540:CDS
AGTCGAAGTGGGTGAAAGAA+GGG 0.512098 7_3:-77029339 None:intergenic
GAAGAGATGGAAGTCGAAGT+GGG 0.516775 7_3:-77029350 None:intergenic
TTATTATATGAAGCAAGATC+AGG 0.525958 7_3:-77030486 None:intergenic
TAGATGTGTTCGTGGAGGAA+TGG 0.529377 7_3:+77033567 Msa1125540:CDS
AGTGATGTGATTGTTGGTGG+TGG 0.530217 7_3:-77029190 None:intergenic
GAGTTTGGATTTGAGGAAGT+GGG 0.530778 7_3:-77029308 None:intergenic
GTTGACGGGCTTTGTAAGGA+AGG 0.532301 7_3:+77029985 Msa1125540:five_prime_UTR
ATTTATGAGTTGTGGAGCAA+AGG 0.534265 7_3:+77030138 Msa1125540:five_prime_UTR
ATTCAAAAGTCAGGCTCCAT+GGG 0.536366 7_3:+77033653 Msa1125540:CDS
ATATTAAAAGTAAACACATC+AGG 0.537741 7_3:-77029748 None:intergenic
TGGAGATGTTTGATGAAATG+AGG 0.540220 7_3:+77029815 Msa1125540:five_prime_UTR
GTGAGAGAAGGTGTCAAGGG+TGG 0.540681 7_3:-77029383 None:intergenic
TCATATAATAAGTTGATGGA+TGG 0.544029 7_3:+77030498 Msa1125540:five_prime_UTR
GGAGGTGTGGTTGTGAGAGA+AGG 0.545393 7_3:-77029395 None:intergenic
GTGTGCTTCAATCTCCTCGA+CGG 0.546739 7_3:+77033596 Msa1125540:CDS
GATTGATGAAGGGATTGGGA+TGG 0.546805 7_3:+77029906 Msa1125540:five_prime_UTR
CGGGCTTTGTAAGGAAGGGA+AGG 0.547322 7_3:+77029990 Msa1125540:five_prime_UTR
GTTGAGGAAATGGAGGAAGT+GGG 0.550410 7_3:-77029248 None:intergenic
CCACACCTCCTACGAATGGA+TGG 0.551673 7_3:+77029408 Msa1125540:five_prime_UTR
AGAAGAGATGGAAGTCGAAG+TGG 0.552252 7_3:-77029351 None:intergenic
GGGAAGAGTGATGTGATTGT+TGG 0.554072 7_3:-77029196 None:intergenic
AATGGCACTGAAGTGCCACC+CGG 0.554795 7_3:+77029059 None:intergenic
TTGCATTTAATGTTATGCGT+AGG 0.556316 7_3:+77029605 Msa1125540:five_prime_UTR
GAACCAACCCTCCTAAATGA+AGG 0.556466 7_3:+77033698 Msa1125540:CDS
AGTAAGACTGAATTGCAAAA+CGG 0.562630 7_3:-77029552 None:intergenic
GTGAATGGACTAGCAGAGCC+GGG 0.564002 7_3:-77029077 None:intergenic
GAGCAGCGAATTGTAGATGA+TGG 0.564385 7_3:-77031825 None:intergenic
TGTTCACTTGATAATGCCTA+CGG 0.566382 7_3:-77030539 None:intergenic
AAGATCTTTGTGATGCGGGA+AGG 0.568642 7_3:+77030307 Msa1125540:five_prime_UTR
CCTTCAAGATCTTTGTGATG+CGG 0.570762 7_3:+77030302 Msa1125540:five_prime_UTR
ACAATACAAGAAATCAAGCT+AGG 0.570810 7_3:-77030168 None:intergenic
GGTGGAGATGAAAGTGAGGA+GGG 0.574042 7_3:-77029473 None:intergenic
TAAATGAAATGCTTGATAAG+GGG 0.576634 7_3:+77030457 Msa1125540:five_prime_UTR
CCCGTCAACCAAAATCTCAC+AGG 0.584991 7_3:-77029971 None:intergenic
TCACAGGTAACATCAGAAAG+TGG 0.587270 7_3:-77029955 None:intergenic
GTATGTTACCTGTGCAGCAG+AGG 0.587827 7_3:-77031890 None:intergenic
AGGATTGGGGAAGATTGAAG+AGG 0.588100 7_3:+77030209 Msa1125540:five_prime_UTR
AGTGGGTGAAAGAAGGGTGG+TGG 0.589081 7_3:-77029333 None:intergenic
TGAAAGAGTATGAAGACCAC+TGG 0.589790 7_3:+77031802 Msa1125540:exon
GTTGCTGGGTATAGAGGAGA+GGG 0.590731 7_3:+77030408 Msa1125540:five_prime_UTR
GGTGGTGGTTGAGGAAATGG+AGG 0.592582 7_3:-77029255 None:intergenic
GGAGAGGGAAATCAAGCAGA+AGG 0.592690 7_3:+77030423 Msa1125540:five_prime_UTR
CCATCCATTCGTAGGAGGTG+TGG 0.592817 7_3:-77029408 None:intergenic
TGGCTTGAGAGCATTGGCAG+GGG 0.596229 7_3:-77029498 None:intergenic
GGGAATGTAGGATTGATGAA+GGG 0.597823 7_3:+77029896 Msa1125540:five_prime_UTR
AGCACCAACCATCTTCAAAG+TGG 0.599416 7_3:-77030733 None:intergenic
GAAGTGGGTTAGGGTTTGTG+GGG 0.600198 7_3:-77029293 None:intergenic
GAATGTACTAGATGTGTTCG+TGG 0.600350 7_3:+77033559 Msa1125540:CDS
TGTTTGGGATAAGATTGTTG+AGG 0.603557 7_3:+77030616 Msa1125540:five_prime_UTR
TTGACGGGCTTTGTAAGGAA+GGG 0.604933 7_3:+77029986 Msa1125540:five_prime_UTR
AAGAGTGATGTGATTGTTGG+TGG 0.605240 7_3:-77029193 None:intergenic
ACAACCACACCTCCTACGAA+TGG 0.606639 7_3:+77029404 Msa1125540:five_prime_UTR
TTTATGAGATGATTGAATTG+GGG 0.607383 7_3:+77029929 Msa1125540:five_prime_UTR
ATGGCTTGAGAGCATTGGCA+GGG 0.607636 7_3:-77029499 None:intergenic
GGTTGTGAGAGAAGGTGTCA+AGG 0.608285 7_3:-77029387 None:intergenic
GGTTGGTGGAGATGAAAGTG+AGG 0.611173 7_3:-77029477 None:intergenic
TGGTGGAGATGAAAGTGAGG+AGG 0.612345 7_3:-77029474 None:intergenic
TATATAATTGCCAACACCGT+AGG 0.612403 7_3:+77030523 Msa1125540:five_prime_UTR
ATATTACAAACCGAAACACT+CGG 0.613026 7_3:-77029643 None:intergenic
CGAAGTGGGTGAAAGAAGGG+TGG 0.618797 7_3:-77029336 None:intergenic
GTTGTGAGAGAAGGTGTCAA+GGG 0.619925 7_3:-77029386 None:intergenic
GTGATGATTGATGGTTTGAG+AGG 0.620383 7_3:+77030189 Msa1125540:five_prime_UTR
ACGTGCCATCCATTCGTAGG+AGG 0.620656 7_3:-77029413 None:intergenic
TATGTTACCTGTGCAGCAGA+GGG 0.620757 7_3:-77031889 None:intergenic
ACCATGCACAACCGATGAGG+AGG 0.621885 7_3:-77031851 None:intergenic
GTTACCTGTGCAGCAGAGGG+AGG 0.626972 7_3:-77031886 None:intergenic
AGTAACATACATAAGACCCA+TGG 0.641591 7_3:-77033669 None:intergenic
TTGATGGTTTGAGAGGATTG+GGG 0.643683 7_3:+77030196 Msa1125540:five_prime_UTR
GGTTGCTGGGTATAGAGGAG+AGG 0.647348 7_3:+77030407 Msa1125540:five_prime_UTR
CGCTTGTGGGAACCCCGTCG+AGG 0.647356 7_3:-77033610 None:intergenic
AGTACGTGCCATCCATTCGT+AGG 0.650285 7_3:-77029416 None:intergenic
AGAACCATGCACAACCGATG+AGG 0.680944 7_3:-77031854 None:intergenic
TTGATGAAATGAGGAAAATG+GGG 0.682853 7_3:+77029824 Msa1125540:five_prime_UTR
GAATTGTAGATGATGGCCAG+TGG 0.712157 7_3:-77031818 None:intergenic
GTGCTTCAATCTCCTCGACG+GGG 0.719267 7_3:+77033598 Msa1125540:CDS
TACATTCAAAGAAAGCAGTG+CGG 0.739974 7_3:-77033543 None:intergenic
AATGGACTAGCAGAGCCGGG+TGG 0.750046 7_3:-77029074 None:intergenic
TGTACTAGATGTGTTCGTGG+AGG 0.754728 7_3:+77033562 Msa1125540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAAAATTTAGAAATAT+TGG - chr7_3:77032080-77032099 None:intergenic 10.0%
!! TAACAAATATAAAGATTAAT+GGG - chr7_3:77032561-77032580 None:intergenic 10.0%
!!! TTTGTAATATTTTGATTCAT+GGG + chr7_3:77029656-77029675 Msa1125540:five_prime_UTR 15.0%
!!! ACTTTTAATACTTTGATTAA+AGG + chr7_3:77029865-77029884 Msa1125540:five_prime_UTR 15.0%
!!! CTTTTAATACTTTGATTAAA+GGG + chr7_3:77029866-77029885 Msa1125540:five_prime_UTR 15.0%
!! AAACAATATAAGATTTAACT+TGG + chr7_3:77030582-77030601 Msa1125540:five_prime_UTR 15.0%
!! AATAAACATATGAATCATTA+AGG - chr7_3:77032334-77032353 None:intergenic 15.0%
!!! ATTCATATGTTTATTCTTTT+GGG + chr7_3:77032339-77032358 Msa1125540:intron 15.0%
!! GTAACAAATATAAAGATTAA+TGG - chr7_3:77032562-77032581 None:intergenic 15.0%
!!! TTATATTTGTTACTTCATTT+TGG + chr7_3:77032569-77032588 Msa1125540:intron 15.0%
!! GAAGAAAAAAAAAATCTATT+TGG - chr7_3:77033146-77033165 None:intergenic 15.0%
!! CATAGTTAAAAATGTAATTA+TGG - chr7_3:77033337-77033356 None:intergenic 15.0%
!!! GTTTGTAATATTTTGATTCA+TGG + chr7_3:77029655-77029674 Msa1125540:five_prime_UTR 20.0%
!!! TTTTGAGTTTTATAATCAGA+TGG + chr7_3:77029708-77029727 Msa1125540:five_prime_UTR 20.0%
!! ATATTAAAAGTAAACACATC+AGG - chr7_3:77029751-77029770 None:intergenic 20.0%
!!! ACTTTTAATATCTTGATTAG+TGG + chr7_3:77029760-77029779 Msa1125540:five_prime_UTR 20.0%
!!! TTTTAAATTTAGTTGTGCAT+TGG + chr7_3:77029795-77029814 Msa1125540:five_prime_UTR 20.0%
!! GTATTAAAAGTAACAACATT+TGG - chr7_3:77029856-77029875 None:intergenic 20.0%
!! TTGTAAATATTTCCATTTCA+TGG + chr7_3:77030820-77030839 Msa1125540:intron 20.0%
!! AAACAACTAAAATCAACATA+AGG + chr7_3:77031173-77031192 Msa1125540:intron 20.0%
!! GCTATTATTTAAAAATCTGT+TGG - chr7_3:77031507-77031526 None:intergenic 20.0%
!! TATAAGCTTATAAGCAATAA+GGG + chr7_3:77031613-77031632 Msa1125540:intron 20.0%
!!! GAATTTTTGATGTATACAAT+TGG + chr7_3:77031667-77031686 Msa1125540:intron 20.0%
!! AAAATTTAGAAATATTGGTG+TGG - chr7_3:77032075-77032094 None:intergenic 20.0%
!!! TTTCTAGTTAGTACTTAAAA+AGG + chr7_3:77032098-77032117 Msa1125540:intron 20.0%
!! TATGATATTACCAAAAAGAA+TGG - chr7_3:77032211-77032230 None:intergenic 20.0%
!!! GATTCATATGTTTATTCTTT+TGG + chr7_3:77032338-77032357 Msa1125540:intron 20.0%
!!! TTCATATGTTTATTCTTTTG+GGG + chr7_3:77032340-77032359 Msa1125540:intron 20.0%
!!! ATGTCTTTTTCTCATTTTTT+TGG + chr7_3:77033090-77033109 Msa1125540:intron 20.0%
!!! TGTCTTTTTCTCATTTTTTT+GGG + chr7_3:77033091-77033110 Msa1125540:intron 20.0%
!! AAACAAAAACTATTTCAAAC+AGG + chr7_3:77033214-77033233 Msa1125540:intron 20.0%
!! TTAAAATCAACAATTTGTGT+AGG + chr7_3:77033416-77033435 Msa1125540:intron 20.0%
!! GTTTTATAATCAGATGGTTA+AGG + chr7_3:77029714-77029733 Msa1125540:five_prime_UTR 25.0%
! TTTGATGAAATGAGGAAAAT+GGG + chr7_3:77029823-77029842 Msa1125540:five_prime_UTR 25.0%
! TTTGATTAAAGGGTTGTTTA+GGG + chr7_3:77029876-77029895 Msa1125540:five_prime_UTR 25.0%
! GTTTATGAGATGATTGAATT+GGG + chr7_3:77029928-77029947 Msa1125540:five_prime_UTR 25.0%
! TTTATGAGATGATTGAATTG+GGG + chr7_3:77029929-77029948 Msa1125540:five_prime_UTR 25.0%
! ACAAAATAATCATACCCTTT+AGG - chr7_3:77030066-77030085 None:intergenic 25.0%
!!! AGGGTATGATTATTTTGTTT+TGG + chr7_3:77030068-77030087 Msa1125540:five_prime_UTR 25.0%
!!! GTATGATTATTTTGTTTTGG+TGG + chr7_3:77030071-77030090 Msa1125540:five_prime_UTR 25.0%
!! AATTTTATAAGTCATGGCAT+CGG - chr7_3:77030385-77030404 None:intergenic 25.0%
!! AACCAGAATTTTATAAGTCA+TGG - chr7_3:77030391-77030410 None:intergenic 25.0%
! GTAAATGAAATGCTTGATAA+GGG + chr7_3:77030456-77030475 Msa1125540:five_prime_UTR 25.0%
! TAAATGAAATGCTTGATAAG+GGG + chr7_3:77030457-77030476 Msa1125540:five_prime_UTR 25.0%
! TTATTATATGAAGCAAGATC+AGG - chr7_3:77030489-77030508 None:intergenic 25.0%
!! TGCTTCATATAATAAGTTGA+TGG + chr7_3:77030494-77030513 Msa1125540:five_prime_UTR 25.0%
!!! TCATATAATAAGTTGATGGA+TGG + chr7_3:77030498-77030517 Msa1125540:five_prime_UTR 25.0%
!! AAATGTTACAATGAAGGTAT+GGG - chr7_3:77030939-77030958 None:intergenic 25.0%
! AAAATGTTACAATGAAGGTA+TGG - chr7_3:77030940-77030959 None:intergenic 25.0%
! ACATGAAAATGTTACAATGA+AGG - chr7_3:77030945-77030964 None:intergenic 25.0%
! AACTAATCACATCAAATTCT+AGG - chr7_3:77031117-77031136 None:intergenic 25.0%
! TGTACATTTATAAGCAACAA+TGG - chr7_3:77031221-77031240 None:intergenic 25.0%
! TTTAAATAATAGCAGCTTCT+AGG + chr7_3:77031514-77031533 Msa1125540:intron 25.0%
! TTAAATAATAGCAGCTTCTA+GGG + chr7_3:77031515-77031534 Msa1125540:intron 25.0%
! CTTATTGCTTATAAGCTTAT+AGG - chr7_3:77031614-77031633 None:intergenic 25.0%
! CTATAAGCTTATAAGCAATA+AGG + chr7_3:77031612-77031631 Msa1125540:intron 25.0%
! ATAAGCTTATAAGCAATAAG+GGG + chr7_3:77031614-77031633 Msa1125540:intron 25.0%
!!! ACACATGTATTGTTTAGTTT+TGG + chr7_3:77031997-77032016 Msa1125540:intron 25.0%
! TGGTAATATCATATCTTCTA+TGG + chr7_3:77032218-77032237 Msa1125540:intron 25.0%
!!! AAATATTTTAGACTGAAGGA+TGG - chr7_3:77032366-77032385 None:intergenic 25.0%
!!! CTTCAAATATTTTAGACTGA+AGG - chr7_3:77032370-77032389 None:intergenic 25.0%
! TAGAATGAACACATTAAGTA+GGG - chr7_3:77032679-77032698 None:intergenic 25.0%
!! GAAAAATAAAAGCACATTGA+AGG - chr7_3:77032771-77032790 None:intergenic 25.0%
! TGCAATACAATTACTTTCTT+TGG + chr7_3:77033363-77033382 Msa1125540:intron 25.0%
!! CATGTCAATTTTCGTTTTTC+TGG - chr7_3:77029104-77029123 None:intergenic 30.0%
TGAATTGCAAAACGGAAAAT+GGG - chr7_3:77029547-77029566 None:intergenic 30.0%
AGTAAGACTGAATTGCAAAA+CGG - chr7_3:77029555-77029574 None:intergenic 30.0%
TTGCATTTAATGTTATGCGT+AGG + chr7_3:77029605-77029624 Msa1125540:five_prime_UTR 30.0%
ATATTACAAACCGAAACACT+CGG - chr7_3:77029646-77029665 None:intergenic 30.0%
!! ATTCATGGGTTTGTTAAATC+TGG + chr7_3:77029670-77029689 Msa1125540:five_prime_UTR 30.0%
ATAATCAGATGGTTAAGGAT+AGG + chr7_3:77029719-77029738 Msa1125540:five_prime_UTR 30.0%
TCTTGATTAGTGGTTATTGT+AGG + chr7_3:77029770-77029789 Msa1125540:five_prime_UTR 30.0%
CTTGATTAGTGGTTATTGTA+GGG + chr7_3:77029771-77029790 Msa1125540:five_prime_UTR 30.0%
GTTTGATGAAATGAGGAAAA+TGG + chr7_3:77029822-77029841 Msa1125540:five_prime_UTR 30.0%
TTGATGAAATGAGGAAAATG+GGG + chr7_3:77029824-77029843 Msa1125540:five_prime_UTR 30.0%
CTTTGATTAAAGGGTTGTTT+AGG + chr7_3:77029875-77029894 Msa1125540:five_prime_UTR 30.0%
GGTTTATGAGATGATTGAAT+TGG + chr7_3:77029927-77029946 Msa1125540:five_prime_UTR 30.0%
! TTTTGGTGGAAATTTTGTGT+GGG + chr7_3:77030085-77030104 Msa1125540:five_prime_UTR 30.0%
ACAATACAAGAAATCAAGCT+AGG - chr7_3:77030171-77030190 None:intergenic 30.0%
TCTTGTATTGTGATGATTGA+TGG + chr7_3:77030180-77030199 Msa1125540:five_prime_UTR 30.0%
GGTTGAAAAAATGCTTAAAG+AGG + chr7_3:77030242-77030261 Msa1125540:five_prime_UTR 30.0%
TGAAAAAATGCTTAAAGAGG+AGG + chr7_3:77030245-77030264 Msa1125540:five_prime_UTR 30.0%
GAAAAAATGCTTAAAGAGGA+GGG + chr7_3:77030246-77030265 Msa1125540:five_prime_UTR 30.0%
! ATTTTATAAGTCATGGCATC+GGG - chr7_3:77030384-77030403 None:intergenic 30.0%
TGCCATGACTTATAAAATTC+TGG + chr7_3:77030386-77030405 Msa1125540:five_prime_UTR 30.0%
! ACTTATAAAATTCTGGTTGC+TGG + chr7_3:77030393-77030412 Msa1125540:five_prime_UTR 30.0%
! CTTATAAAATTCTGGTTGCT+GGG + chr7_3:77030394-77030413 Msa1125540:five_prime_UTR 30.0%
GGTAAATGAAATGCTTGATA+AGG + chr7_3:77030455-77030474 Msa1125540:five_prime_UTR 30.0%
CATTATCAAGTGAACAAGAT+TGG + chr7_3:77030546-77030565 Msa1125540:five_prime_UTR 30.0%
! TTGGTTGTCAAACTTTGTTT+GGG + chr7_3:77030601-77030620 Msa1125540:five_prime_UTR 30.0%
TGATATCTTGTAACTCACAA+AGG - chr7_3:77030871-77030890 None:intergenic 30.0%
CTTATCCTCTACTATAGAAA+TGG + chr7_3:77031716-77031735 Msa1125540:intron 30.0%
GTGATTGATCGTTACTAAAT+AGG + chr7_3:77031769-77031788 Msa1125540:intron 30.0%
ATGAAGTATGACTATACCTT+AGG + chr7_3:77031957-77031976 Msa1125540:intron 30.0%
TGAAAAAATGCATATGCCTA+AGG - chr7_3:77031976-77031995 None:intergenic 30.0%
! CATCTCAATGCTAGTTTAAT+GGG + chr7_3:77032026-77032045 Msa1125540:intron 30.0%
ATTTAGAAATATTGGTGTGG+TGG - chr7_3:77032072-77032091 None:intergenic 30.0%
ATAAATGAGGCTACATATAC+TGG - chr7_3:77032188-77032207 None:intergenic 30.0%
CCAAAAAGAATGGATAAATG+AGG - chr7_3:77032201-77032220 None:intergenic 30.0%
! CCTCATTTATCCATTCTTTT+TGG + chr7_3:77032198-77032217 Msa1125540:intron 30.0%
AGACAAAATCTTAGAGGATA+TGG - chr7_3:77032302-77032321 None:intergenic 30.0%
!!! TCCTCTAAGATTTTGTCTAT+TGG + chr7_3:77032304-77032323 Msa1125540:intron 30.0%
GTTTCAGATATTGACACTAT+GGG - chr7_3:77032416-77032435 None:intergenic 30.0%
TGTTTCAGATATTGACACTA+TGG - chr7_3:77032417-77032436 None:intergenic 30.0%
!! TACTTCATTTTGGCATAAGT+TGG + chr7_3:77032579-77032598 Msa1125540:intron 30.0%
TTCATCATTCATTCTTGCAA+TGG + chr7_3:77032604-77032623 Msa1125540:intron 30.0%
TGATTGTTGATCCAAAGTAA+AGG - chr7_3:77032635-77032654 None:intergenic 30.0%
CTAGAATGAACACATTAAGT+AGG - chr7_3:77032680-77032699 None:intergenic 30.0%
TTACTTCCACACTGAATTAT+GGG - chr7_3:77032732-77032751 None:intergenic 30.0%
TTTACTTCCACACTGAATTA+TGG - chr7_3:77032733-77032752 None:intergenic 30.0%
TTTAGACTGAGTTTACTTTG+TGG + chr7_3:77032810-77032829 Msa1125540:intron 30.0%
GTTTCTATCGTTAGTTAGTT+TGG - chr7_3:77032917-77032936 None:intergenic 30.0%
ACTAACGATAGAAACATTTG+AGG + chr7_3:77032922-77032941 Msa1125540:intron 30.0%
!! TTAACTCATTGATTTGTCGT+TGG + chr7_3:77033458-77033477 Msa1125540:intron 30.0%
AAGATGCTTATTCAAAAGTC+AGG + chr7_3:77033644-77033663 Msa1125540:CDS 30.0%
!!! GGTGGTTTTGTTATTGGATT+TGG - chr7_3:77029145-77029164 None:intergenic 35.0%
CTGAATTGCAAAACGGAAAA+TGG - chr7_3:77029548-77029567 None:intergenic 35.0%
GTTATGCGTAGGTTAATTGA+TGG + chr7_3:77029616-77029635 Msa1125540:five_prime_UTR 35.0%
TGGAGATGTTTGATGAAATG+AGG + chr7_3:77029815-77029834 Msa1125540:five_prime_UTR 35.0%
! TGATGTTACCTGTGAGATTT+TGG + chr7_3:77029963-77029982 Msa1125540:five_prime_UTR 35.0%
!! GTTTTGGTGGAAATTTTGTG+TGG + chr7_3:77030084-77030103 Msa1125540:five_prime_UTR 35.0%
TGGAGGTTATTTATGAGTTG+TGG + chr7_3:77030130-77030149 Msa1125540:five_prime_UTR 35.0%
ATTTATGAGTTGTGGAGCAA+AGG + chr7_3:77030138-77030157 Msa1125540:five_prime_UTR 35.0%
! ATTGATGGTTTGAGAGGATT+GGG + chr7_3:77030195-77030214 Msa1125540:five_prime_UTR 35.0%
TCTCAACCTATTTGCATCTT+CGG - chr7_3:77030334-77030353 None:intergenic 35.0%
AGATTACTTGCTTCAAGCAA+AGG + chr7_3:77030351-77030370 Msa1125540:five_prime_UTR 35.0%
TATATAATTGCCAACACCGT+AGG + chr7_3:77030523-77030542 Msa1125540:five_prime_UTR 35.0%
!! TGTTCACTTGATAATGCCTA+CGG - chr7_3:77030542-77030561 None:intergenic 35.0%
CTTGGTTGTCAAACTTTGTT+TGG + chr7_3:77030600-77030619 Msa1125540:five_prime_UTR 35.0%
! TGTTTGGGATAAGATTGTTG+AGG + chr7_3:77030616-77030635 Msa1125540:five_prime_UTR 35.0%
! CTGAATTTTCAGCTGATTAC+AGG - chr7_3:77030659-77030678 None:intergenic 35.0%
TTACAATGTTCACTAGCATC+AGG - chr7_3:77030806-77030825 None:intergenic 35.0%
! TGACTGTGCAAATTTTGTGA+TGG + chr7_3:77031257-77031276 Msa1125540:intron 35.0%
GATGACTCTACTATTGTGTT+AGG + chr7_3:77031390-77031409 Msa1125540:intron 35.0%
CTACTATTGTGTTAGGATCA+TGG + chr7_3:77031397-77031416 Msa1125540:intron 35.0%
TATTGTGTTAGGATCATGGA+AGG + chr7_3:77031401-77031420 Msa1125540:intron 35.0%
ATTGTGTTAGGATCATGGAA+GGG + chr7_3:77031402-77031421 Msa1125540:intron 35.0%
TTTCCATGGTCTGAAGAAAA+AGG + chr7_3:77031645-77031664 Msa1125540:intron 35.0%
! ATTCCTTTTTCTTCAGACCA+TGG - chr7_3:77031651-77031670 None:intergenic 35.0%
CCTTACCATTTCTATAGTAG+AGG - chr7_3:77031724-77031743 None:intergenic 35.0%
CCTCTACTATAGAAATGGTA+AGG + chr7_3:77031721-77031740 Msa1125540:intron 35.0%
! GCATCTCAATGCTAGTTTAA+TGG + chr7_3:77032025-77032044 Msa1125540:intron 35.0%
! GATCTGAGAGTATATGATGT+TGG - chr7_3:77032150-77032169 None:intergenic 35.0%
GCCAATAGACAAAATCTTAG+AGG - chr7_3:77032308-77032327 None:intergenic 35.0%
TCAGACTGAAACCACTTATT+TGG - chr7_3:77032493-77032512 None:intergenic 35.0%
! ATAAAAGCACATTGAAGGTG+CGG - chr7_3:77032766-77032785 None:intergenic 35.0%
! GAAACACAAATGCTGTGTTT+TGG + chr7_3:77032840-77032859 Msa1125540:intron 35.0%
! GTTTTATGTGAGTAGGTTTC+AGG + chr7_3:77033243-77033262 Msa1125540:intron 35.0%
! TGATTTGTCGTTGGAATTTC+AGG + chr7_3:77033467-77033486 Msa1125540:intron 35.0%
GATTTGTCGTTGGAATTTCA+GGG + chr7_3:77033468-77033487 Msa1125540:intron 35.0%
ATTTGTCGTTGGAATTTCAG+GGG + chr7_3:77033469-77033488 Msa1125540:intron 35.0%
TACATTCAAAGAAAGCAGTG+CGG - chr7_3:77033546-77033565 None:intergenic 35.0%
! TTTGTTATACTTGCGCTTGT+GGG - chr7_3:77033626-77033645 None:intergenic 35.0%
AGTAACATACATAAGACCCA+TGG - chr7_3:77033672-77033691 None:intergenic 35.0%
!! TTTCGTTTTTCTGGCGTGAA+TGG - chr7_3:77029095-77029114 None:intergenic 40.0%
AAGAGTGATGTGATTGTTGG+TGG - chr7_3:77029196-77029215 None:intergenic 40.0%
GAGTTTGGATTTGAGGAAGT+GGG - chr7_3:77029311-77029330 None:intergenic 40.0%
! TGCAAAACGGAAAATGGGTT+CGG - chr7_3:77029542-77029561 None:intergenic 40.0%
TGATGGAAAACCGAGTGTTT+CGG + chr7_3:77029633-77029652 Msa1125540:five_prime_UTR 40.0%
AAGGGTTGTTTAGGGAATGT+AGG + chr7_3:77029884-77029903 Msa1125540:five_prime_UTR 40.0%
AGGGAATGTAGGATTGATGA+AGG + chr7_3:77029895-77029914 Msa1125540:five_prime_UTR 40.0%
GGGAATGTAGGATTGATGAA+GGG + chr7_3:77029896-77029915 Msa1125540:five_prime_UTR 40.0%
TGTAGGATTGATGAAGGGAT+TGG + chr7_3:77029901-77029920 Msa1125540:five_prime_UTR 40.0%
GTAGGATTGATGAAGGGATT+GGG + chr7_3:77029902-77029921 Msa1125540:five_prime_UTR 40.0%
TCACAGGTAACATCAGAAAG+TGG - chr7_3:77029958-77029977 None:intergenic 40.0%
!!! ACCTGTGAGATTTTGGTTGA+CGG + chr7_3:77029970-77029989 Msa1125540:five_prime_UTR 40.0%
! TAAGGAAGGGAAGGTTTTAC+AGG + chr7_3:77029999-77030018 Msa1125540:five_prime_UTR 40.0%
! TTGATGGAGTTTTCGAAGAG+AGG + chr7_3:77030033-77030052 Msa1125540:five_prime_UTR 40.0%
! TGATGGAGTTTTCGAAGAGA+GGG + chr7_3:77030034-77030053 Msa1125540:five_prime_UTR 40.0%
! GTGGAAATTTTGTGTGGGAA+AGG + chr7_3:77030090-77030109 Msa1125540:five_prime_UTR 40.0%
! AATTTTGTGTGGGAAAGGAG+AGG + chr7_3:77030095-77030114 Msa1125540:five_prime_UTR 40.0%
! GTGATGATTGATGGTTTGAG+AGG + chr7_3:77030189-77030208 Msa1125540:five_prime_UTR 40.0%
! GATTGATGGTTTGAGAGGAT+TGG + chr7_3:77030194-77030213 Msa1125540:five_prime_UTR 40.0%
! TTGATGGTTTGAGAGGATTG+GGG + chr7_3:77030196-77030215 Msa1125540:five_prime_UTR 40.0%
GATTGAAGAGGCAATGAGAT+TGG + chr7_3:77030221-77030240 Msa1125540:five_prime_UTR 40.0%
AATGCTTAAAGAGGAGGGTT+TGG + chr7_3:77030251-77030270 Msa1125540:five_prime_UTR 40.0%
CCTTCAAGATCTTTGTGATG+CGG + chr7_3:77030302-77030321 Msa1125540:five_prime_UTR 40.0%
CTTCAAGATCTTTGTGATGC+GGG + chr7_3:77030303-77030322 Msa1125540:five_prime_UTR 40.0%
ATCAAGTGAACAAGATTGGC+AGG + chr7_3:77030550-77030569 Msa1125540:five_prime_UTR 40.0%
! TTTTGCGCAACGATGAAGAT+AGG + chr7_3:77030696-77030715 Msa1125540:five_prime_UTR 40.0%
! TTGCAAGTCCACTTTGAAGA+TGG + chr7_3:77030725-77030744 Msa1125540:five_prime_UTR 40.0%
! AAGTCCACTTTGAAGATGGT+TGG + chr7_3:77030729-77030748 Msa1125540:intron 40.0%
GTGTATCAGTCTCCATGAAA+TGG - chr7_3:77030835-77030854 None:intergenic 40.0%
TGTAACTCACAAAGGAGACA+CGG - chr7_3:77030863-77030882 None:intergenic 40.0%
TTATCAACGGTTTGTGGTAG+CGG - chr7_3:77031020-77031039 None:intergenic 40.0%
! CTACCACAAACCGTTGATAA+AGG + chr7_3:77031020-77031039 Msa1125540:intron 40.0%
! TCATTTTGTCGTCACCTTAC+AGG + chr7_3:77031444-77031463 Msa1125540:intron 40.0%
TAAGTACATGTTGAGCTCCA+AGG - chr7_3:77031474-77031493 None:intergenic 40.0%
!!! AAGGGGAGTTTTGATTTCCA+TGG + chr7_3:77031631-77031650 Msa1125540:intron 40.0%
! TGAAAGAGTATGAAGACCAC+TGG + chr7_3:77031802-77031821 Msa1125540:exon 40.0%
ATACCTCACTTCCACTTGAA+TGG + chr7_3:77031909-77031928 Msa1125540:intron 40.0%
TACCTCACTTCCACTTGAAT+GGG + chr7_3:77031910-77031929 Msa1125540:intron 40.0%
TCAAAGAGAACCCATTCAAG+TGG - chr7_3:77031923-77031942 None:intergenic 40.0%
AACGACTCTCACCAAATAAG+TGG + chr7_3:77032479-77032498 Msa1125540:intron 40.0%
CAATGGGAAAGAATGAACTG+TGG - chr7_3:77032525-77032544 None:intergenic 40.0%
CACAGTTCATTCTTTCCCAT+TGG + chr7_3:77032523-77032542 Msa1125540:intron 40.0%
CAATGGCTACACCTTTACTT+TGG + chr7_3:77032621-77032640 Msa1125540:intron 40.0%
GAATTATGGGAAGTTCAGTG+TGG - chr7_3:77032719-77032738 None:intergenic 40.0%
GAACTTCCCATAATTCAGTG+TGG + chr7_3:77032723-77032742 Msa1125540:intron 40.0%
TGCTTGAGAACTGAACTGTT+TGG - chr7_3:77033051-77033070 None:intergenic 40.0%
!!! GCACGTAGTTTTATGTGAGT+AGG + chr7_3:77033236-77033255 Msa1125540:intron 40.0%
TCACCTTTCATCTCTCTTTC+TGG + chr7_3:77033387-77033406 Msa1125540:intron 40.0%
TGACCAGAAAGAGAGATGAA+AGG - chr7_3:77033393-77033412 None:intergenic 40.0%
GAATGTACTAGATGTGTTCG+TGG + chr7_3:77033559-77033578 Msa1125540:CDS 40.0%
! CTTTGTTATACTTGCGCTTG+TGG - chr7_3:77033627-77033646 None:intergenic 40.0%
TATTCAAAAGTCAGGCTCCA+TGG + chr7_3:77033652-77033671 Msa1125540:CDS 40.0%
ATTCAAAAGTCAGGCTCCAT+GGG + chr7_3:77033653-77033672 Msa1125540:CDS 40.0%
!!! GGTGGTGGTGGTTTTGTTAT+TGG - chr7_3:77029151-77029170 None:intergenic 45.0%
! AGTGATGTGATTGTTGGTGG+TGG - chr7_3:77029193-77029212 None:intergenic 45.0%
GGGAAGAGTGATGTGATTGT+TGG - chr7_3:77029199-77029218 None:intergenic 45.0%
GTTGAGGAAATGGAGGAAGT+GGG - chr7_3:77029251-77029270 None:intergenic 45.0%
!! GGATTTGAGGAAGTGGGTTA+GGG - chr7_3:77029305-77029324 None:intergenic 45.0%
! TGGATTTGAGGAAGTGGGTT+AGG - chr7_3:77029306-77029325 None:intergenic 45.0%
GGAGTTTGGATTTGAGGAAG+TGG - chr7_3:77029312-77029331 None:intergenic 45.0%
AGTCGAAGTGGGTGAAAGAA+GGG - chr7_3:77029342-77029361 None:intergenic 45.0%
AAGTCGAAGTGGGTGAAAGA+AGG - chr7_3:77029343-77029362 None:intergenic 45.0%
GAAGAGATGGAAGTCGAAGT+GGG - chr7_3:77029353-77029372 None:intergenic 45.0%
AGAAGAGATGGAAGTCGAAG+TGG - chr7_3:77029354-77029373 None:intergenic 45.0%
TCGACTTCCATCTCTTCTCT+TGG + chr7_3:77029356-77029375 Msa1125540:five_prime_UTR 45.0%
CGACTTCCATCTCTTCTCTT+GGG + chr7_3:77029357-77029376 Msa1125540:five_prime_UTR 45.0%
!! GTTGTGAGAGAAGGTGTCAA+GGG - chr7_3:77029389-77029408 None:intergenic 45.0%
! AGAAGATGGCTTGAGAGCAT+TGG - chr7_3:77029507-77029526 None:intergenic 45.0%
! GGAAAATGGGTTCGGTTTGT+GGG - chr7_3:77029534-77029553 None:intergenic 45.0%
GATTGATGAAGGGATTGGGA+TGG + chr7_3:77029906-77029925 Msa1125540:five_prime_UTR 45.0%
!!! CCTGTGAGATTTTGGTTGAC+GGG + chr7_3:77029971-77029990 Msa1125540:five_prime_UTR 45.0%
!! TTTGGTTGACGGGCTTTGTA+AGG + chr7_3:77029981-77030000 Msa1125540:five_prime_UTR 45.0%
!! TTGACGGGCTTTGTAAGGAA+GGG + chr7_3:77029986-77030005 Msa1125540:five_prime_UTR 45.0%
!! ACAGGCGTGTGATTTGTTGA+TGG + chr7_3:77030017-77030036 Msa1125540:five_prime_UTR 45.0%
! GATGGAGTTTTCGAAGAGAG+GGG + chr7_3:77030035-77030054 Msa1125540:five_prime_UTR 45.0%
! AAGAGAGGGGTTTTGCCTAA+AGG + chr7_3:77030048-77030067 Msa1125540:five_prime_UTR 45.0%
! AGAGAGGGGTTTTGCCTAAA+GGG + chr7_3:77030049-77030068 Msa1125540:five_prime_UTR 45.0%
! TGGGAAAGGAGAGGCTTTTA+AGG + chr7_3:77030104-77030123 Msa1125540:five_prime_UTR 45.0%
!!! AGGAGAGGCTTTTAAGGCTT+TGG + chr7_3:77030110-77030129 Msa1125540:five_prime_UTR 45.0%
!!! AGAGGCTTTTAAGGCTTTGG+AGG + chr7_3:77030113-77030132 Msa1125540:five_prime_UTR 45.0%
AGGATTGGGGAAGATTGAAG+AGG + chr7_3:77030209-77030228 Msa1125540:five_prime_UTR 45.0%
CCGCATCACAAAGATCTTGA+AGG - chr7_3:77030305-77030324 None:intergenic 45.0%
AAGATCTTTGTGATGCGGGA+AGG + chr7_3:77030307-77030326 Msa1125540:five_prime_UTR 45.0%
GAAGGACCGAAGATGCAAAT+AGG + chr7_3:77030325-77030344 Msa1125540:five_prime_UTR 45.0%
! ATTCTGGTTGCTGGGTATAG+AGG + chr7_3:77030402-77030421 Msa1125540:five_prime_UTR 45.0%
TCAAGCAGAAGGAGAGTTAG+TGG + chr7_3:77030434-77030453 Msa1125540:five_prime_UTR 45.0%
!! CTTGATAATGCCTACGGTGT+TGG - chr7_3:77030536-77030555 None:intergenic 45.0%
AGCACCAACCATCTTCAAAG+TGG - chr7_3:77030736-77030755 None:intergenic 45.0%
! TGGTTGGTGCTCTAAACTCA+CGG + chr7_3:77030745-77030764 Msa1125540:intron 45.0%
TATCAACGGTTTGTGGTAGC+GGG - chr7_3:77031019-77031038 None:intergenic 45.0%
TGGCCTTTATCAACGGTTTG+TGG - chr7_3:77031026-77031045 None:intergenic 45.0%
! ACAAACCGTTGATAAAGGCC+AGG + chr7_3:77031025-77031044 Msa1125540:intron 45.0%
! CAAACCGTTGATAAAGGCCA+GGG + chr7_3:77031026-77031045 Msa1125540:intron 45.0%
! AAACCGTTGATAAAGGCCAG+GGG + chr7_3:77031027-77031046 Msa1125540:intron 45.0%
TAAAGGCCAGGGGTAGAATT+TGG + chr7_3:77031037-77031056 Msa1125540:intron 45.0%
TGGTGTCTCCTTAATCTCTG+CGG + chr7_3:77031057-77031076 Msa1125540:intron 45.0%
ACATGTGACCGCAGAGATTA+AGG - chr7_3:77031068-77031087 None:intergenic 45.0%
TTAATCTCTGCGGTCACATG+TGG + chr7_3:77031067-77031086 Msa1125540:intron 45.0%
! GAATTGTAGATGATGGCCAG+TGG - chr7_3:77031821-77031840 None:intergenic 45.0%
GAGCAGCGAATTGTAGATGA+TGG - chr7_3:77031828-77031847 None:intergenic 45.0%
TATGTTACCTGTGCAGCAGA+GGG - chr7_3:77031892-77031911 None:intergenic 45.0%
AACCCATTCAAGTGGAAGTG+AGG - chr7_3:77031915-77031934 None:intergenic 45.0%
GGCTACATATACTGGTGTGA+TGG - chr7_3:77032180-77032199 None:intergenic 45.0%
GGGAGTGAATGACAACCAAT+GGG - chr7_3:77032541-77032560 None:intergenic 45.0%
TGGGAGTGAATGACAACCAA+TGG - chr7_3:77032542-77032561 None:intergenic 45.0%
TGTTGCCTGTGTATCATCAC+TGG + chr7_3:77033507-77033526 Msa1125540:intron 45.0%
GTTGCCTGTGTATCATCACT+GGG + chr7_3:77033508-77033527 Msa1125540:intron 45.0%
TTGCCTGTGTATCATCACTG+GGG + chr7_3:77033509-77033528 Msa1125540:intron 45.0%
TGTACTAGATGTGTTCGTGG+AGG + chr7_3:77033562-77033581 Msa1125540:CDS 45.0%
TAGATGTGTTCGTGGAGGAA+TGG + chr7_3:77033567-77033586 Msa1125540:CDS 45.0%
!! GATGTGATTGTTGGTGGTGG+TGG - chr7_3:77029190-77029209 None:intergenic 50.0%
! AAGTGGGTGTAGTGTTGGGT+GGG - chr7_3:77029235-77029254 None:intergenic 50.0%
GAGGAAGTGGGTGTAGTGTT+GGG - chr7_3:77029239-77029258 None:intergenic 50.0%
GGTTGAGGAAATGGAGGAAG+TGG - chr7_3:77029252-77029271 None:intergenic 50.0%
! TGAGGTGGTGGTTGAGGAAA+TGG - chr7_3:77029261-77029280 None:intergenic 50.0%
GTTAGGGTTTGTGGGGTGAA+GGG - chr7_3:77029289-77029308 None:intergenic 50.0%
!! GAAGTGGGTTAGGGTTTGTG+GGG - chr7_3:77029296-77029315 None:intergenic 50.0%
!! GGAAGTGGGTTAGGGTTTGT+GGG - chr7_3:77029297-77029316 None:intergenic 50.0%
!! AGGAAGTGGGTTAGGGTTTG+TGG - chr7_3:77029298-77029317 None:intergenic 50.0%
!! GGTGGTGGAGTTTGGATTTG+AGG - chr7_3:77029318-77029337 None:intergenic 50.0%
TGGAAGCCCAAGAGAAGAGA+TGG - chr7_3:77029366-77029385 None:intergenic 50.0%
!! GGTTGTGAGAGAAGGTGTCA+AGG - chr7_3:77029390-77029409 None:intergenic 50.0%
ACAACCACACCTCCTACGAA+TGG + chr7_3:77029404-77029423 Msa1125540:five_prime_UTR 50.0%
AGTACGTGCCATCCATTCGT+AGG - chr7_3:77029419-77029438 None:intergenic 50.0%
AGATGAAAGTGAGGAGGGTG+CGG - chr7_3:77029471-77029490 None:intergenic 50.0%
GGTGGAGATGAAAGTGAGGA+GGG - chr7_3:77029476-77029495 None:intergenic 50.0%
TGGTGGAGATGAAAGTGAGG+AGG - chr7_3:77029477-77029496 None:intergenic 50.0%
!! GGTTGGTGGAGATGAAAGTG+AGG - chr7_3:77029480-77029499 None:intergenic 50.0%
!! ATGGCTTGAGAGCATTGGCA+GGG - chr7_3:77029502-77029521 None:intergenic 50.0%
GGTTTGTGGGCAAGAGAAGA+TGG - chr7_3:77029521-77029540 None:intergenic 50.0%
! CGGAAAATGGGTTCGGTTTG+TGG - chr7_3:77029535-77029554 None:intergenic 50.0%
CCCGTCAACCAAAATCTCAC+AGG - chr7_3:77029974-77029993 None:intergenic 50.0%
!! GTTGACGGGCTTTGTAAGGA+AGG + chr7_3:77029985-77030004 Msa1125540:five_prime_UTR 50.0%
GTTGCTGGGTATAGAGGAGA+GGG + chr7_3:77030408-77030427 Msa1125540:five_prime_UTR 50.0%
GGAGAGGGAAATCAAGCAGA+AGG + chr7_3:77030423-77030442 Msa1125540:five_prime_UTR 50.0%
! CTACCCCTGGCCTTTATCAA+CGG - chr7_3:77031033-77031052 None:intergenic 50.0%
GAGACACCAAATTCTACCCC+TGG - chr7_3:77031046-77031065 None:intergenic 50.0%
GTCACCTTACAGGCTAACCT+TGG + chr7_3:77031454-77031473 Msa1125540:intron 50.0%
!! AGCTCCAAGGTTAGCCTGTA+AGG - chr7_3:77031461-77031480 None:intergenic 50.0%
AGAACCATGCACAACCGATG+AGG - chr7_3:77031857-77031876 None:intergenic 50.0%
GTATGTTACCTGTGCAGCAG+AGG - chr7_3:77031893-77031912 None:intergenic 50.0%
AGAGGATATGGCTAGACTGC+AGG - chr7_3:77032290-77032309 None:intergenic 50.0%
CTACCCCAGTGATGATACAC+AGG - chr7_3:77033515-77033534 None:intergenic 50.0%
GTGTGCTTCAATCTCCTCGA+CGG + chr7_3:77033596-77033615 Msa1125540:CDS 50.0%
TGTGCTTCAATCTCCTCGAC+GGG + chr7_3:77033597-77033616 Msa1125540:CDS 50.0%
!! GTGAATGGACTAGCAGAGCC+GGG - chr7_3:77029080-77029099 None:intergenic 55.0%
!! CGTGAATGGACTAGCAGAGC+CGG - chr7_3:77029081-77029100 None:intergenic 55.0%
!! TTGTTGGTGGTGGTGGTGGT+GGG - chr7_3:77029183-77029202 None:intergenic 55.0%
!! ATTGTTGGTGGTGGTGGTGG+TGG - chr7_3:77029184-77029203 None:intergenic 55.0%
!! GTGATTGTTGGTGGTGGTGG+TGG - chr7_3:77029187-77029206 None:intergenic 55.0%
! TGTTGGGTGGGGGAAAGTGT+TGG - chr7_3:77029223-77029242 None:intergenic 55.0%
! AGTGGGTGTAGTGTTGGGTG+GGG - chr7_3:77029234-77029253 None:intergenic 55.0%
! GAAGTGGGTGTAGTGTTGGG+TGG - chr7_3:77029236-77029255 None:intergenic 55.0%
GGAGGAAGTGGGTGTAGTGT+TGG - chr7_3:77029240-77029259 None:intergenic 55.0%
! GGTGGTGGTTGAGGAAATGG+AGG - chr7_3:77029258-77029277 None:intergenic 55.0%
GGTTAGGGTTTGTGGGGTGA+AGG - chr7_3:77029290-77029309 None:intergenic 55.0%
!! AGAAGGGTGGTGGTGGAGTT+TGG - chr7_3:77029326-77029345 None:intergenic 55.0%
AGTGGGTGAAAGAAGGGTGG+TGG - chr7_3:77029336-77029355 None:intergenic 55.0%
CGAAGTGGGTGAAAGAAGGG+TGG - chr7_3:77029339-77029358 None:intergenic 55.0%
!! GTGAGAGAAGGTGTCAAGGG+TGG - chr7_3:77029386-77029405 None:intergenic 55.0%
! GGAGGTGTGGTTGTGAGAGA+AGG - chr7_3:77029398-77029417 None:intergenic 55.0%
CCATCCATTCGTAGGAGGTG+TGG - chr7_3:77029411-77029430 None:intergenic 55.0%
CCACACCTCCTACGAATGGA+TGG + chr7_3:77029408-77029427 Msa1125540:five_prime_UTR 55.0%
ACGTGCCATCCATTCGTAGG+AGG - chr7_3:77029416-77029435 None:intergenic 55.0%
!! TTGAGAGCATTGGCAGGGGT+TGG - chr7_3:77029497-77029516 None:intergenic 55.0%
!! TGGCTTGAGAGCATTGGCAG+GGG - chr7_3:77029501-77029520 None:intergenic 55.0%
!! GATGGCTTGAGAGCATTGGC+AGG - chr7_3:77029503-77029522 None:intergenic 55.0%
! CGGGCTTTGTAAGGAAGGGA+AGG + chr7_3:77029990-77030009 Msa1125540:five_prime_UTR 55.0%
GGTTGCTGGGTATAGAGGAG+AGG + chr7_3:77030407-77030426 Msa1125540:five_prime_UTR 55.0%
ACCATGCACAACCGATGAGG+AGG - chr7_3:77031854-77031873 None:intergenic 55.0%
GTGCTTCAATCTCCTCGACG+GGG + chr7_3:77033598-77033617 Msa1125540:CDS 55.0%
!! AATGGACTAGCAGAGCCGGG+TGG - chr7_3:77029077-77029096 None:intergenic 60.0%
!! GGGTTGAGGATTGGTGGTGG+TGG - chr7_3:77029163-77029182 None:intergenic 60.0%
!! GGTGGGTTGAGGATTGGTGG+TGG - chr7_3:77029166-77029185 None:intergenic 60.0%
!! GGTGGTGGGTTGAGGATTGG+TGG - chr7_3:77029169-77029188 None:intergenic 60.0%
!! GGTGGTGGTGGGTTGAGGAT+TGG - chr7_3:77029172-77029191 None:intergenic 60.0%
!! GGGTGGGGGAAAGTGTTGGA+GGG - chr7_3:77029219-77029238 None:intergenic 60.0%
!! TGGGTGGGGGAAAGTGTTGG+AGG - chr7_3:77029220-77029239 None:intergenic 60.0%
! GTGGGTGTAGTGTTGGGTGG+GGG - chr7_3:77029233-77029252 None:intergenic 60.0%
! GTGGAGTGAGGTGGTGGTTG+AGG - chr7_3:77029267-77029286 None:intergenic 60.0%
TGAAGGGTGGAGTGAGGTGG+TGG - chr7_3:77029273-77029292 None:intergenic 60.0%
AGGGTTTGTGGGGTGAAGGG+TGG - chr7_3:77029286-77029305 None:intergenic 60.0%
! GGGTGAAAGAAGGGTGGTGG+TGG - chr7_3:77029333-77029352 None:intergenic 60.0%
! TGAAAGTGAGGAGGGTGCGG+AGG - chr7_3:77029468-77029487 None:intergenic 60.0%
!! AGAGCATTGGCAGGGGTTGG+TGG - chr7_3:77029494-77029513 None:intergenic 60.0%
TGCACAACCGATGAGGAGGC+AGG - chr7_3:77031850-77031869 None:intergenic 60.0%
! GCCTCCTCATCGGTTGTGCA+TGG + chr7_3:77031850-77031869 Msa1125540:CDS 60.0%
GTTACCTGTGCAGCAGAGGG+AGG - chr7_3:77031889-77031908 None:intergenic 60.0%
!! GTGGTGGTGGTGGTGGGTTG+AGG - chr7_3:77029177-77029196 None:intergenic 65.0%
GGGTGAAGGGTGGAGTGAGG+TGG - chr7_3:77029276-77029295 None:intergenic 65.0%
GTGGGGTGAAGGGTGGAGTG+AGG - chr7_3:77029279-77029298 None:intergenic 65.0%
CGCTGCTCCTGCCTCCTCAT+CGG + chr7_3:77031840-77031859 Msa1125540:CDS 65.0%
TGCGCCTCCCTCTGCTGCAC+AGG + chr7_3:77031882-77031901 Msa1125540:CDS 70.0%
CGCTTGTGGGAACCCCGTCG+AGG - chr7_3:77033613-77033632 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 77029074 77033717 77029074 ID=Msa1125540;Name=Msa1125540
chr7_3 mRNA 77029074 77033717 77029074 ID=Msa1125540-mRNA-1;Parent=Msa1125540;Name=Msa1125540-mRNA-1;_AED=0.20;_eAED=0.28;_QI=1693|0.5|0.66|1|0.5|0.33|3|0|91
chr7_3 exon 77029074 77030746 77029074 ID=Msa1125540-mRNA-1:exon:21140;Parent=Msa1125540-mRNA-1
chr7_3 exon 77031791 77031903 77031791 ID=Msa1125540-mRNA-1:exon:21141;Parent=Msa1125540-mRNA-1
chr7_3 exon 77033535 77033717 77033535 ID=Msa1125540-mRNA-1:exon:21142;Parent=Msa1125540-mRNA-1
chr7_3 five_prime_UTR 77029074 77030746 77029074 ID=Msa1125540-mRNA-1:five_prime_utr;Parent=Msa1125540-mRNA-1
chr7_3 five_prime_UTR 77031791 77031810 77031791 ID=Msa1125540-mRNA-1:five_prime_utr;Parent=Msa1125540-mRNA-1
chr7_3 CDS 77031811 77031903 77031811 ID=Msa1125540-mRNA-1:cds;Parent=Msa1125540-mRNA-1
chr7_3 CDS 77033535 77033717 77033535 ID=Msa1125540-mRNA-1:cds;Parent=Msa1125540-mRNA-1
Gene Sequence

>Msa1125540

ATGAAGACCACTGGCCATCATCTACAATTCGCTGCTCCTGCCTCCTCATCGGTTGTGCATGGTTCTGCTGATGCGCCTCCCTCTGCTGCACAGTGCAGCTTCCGCACTGCTTTCTTTGAATGTACTAGATGTGTTCGTGGAGGAATGGAGCTGAGTGTGCTTCAATCTCCTCGACGGGGTTCCCACAAGCGCAAGTATAACAAAGATGCTTATTCAAAAGTCAGGCTCCATGGGTCTTATGTATGTTACTTGATGAGAACCAACCCTCCTAAATGA
Protein sequence

>Msa1125540

MKTTGHHLQFAAPASSSVVHGSADAPPSAAQCSFRTAFFECTRCVRGGMELSVLQSPRRGSHKRKYNKDAYSKVRLHGSYVCYLMRTNPPK*