Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125620 | PNX97237.1 | 96.296 | 135 | 5 | 0 | 4 | 138 | 25 | 159 | 1.92e-88 | 264 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125620 | sp|Q9LXJ0|FTZ22_ARATH | 83.582 | 134 | 22 | 0 | 4 | 137 | 339 | 472 | 2.11e-73 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125620 | A0A2K3N2H7 | 96.296 | 135 | 5 | 0 | 4 | 138 | 25 | 159 | 9.16e-89 | 264 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0143180 | Msa1125620 | 0.901976 | 1.551948e-78 | -8.615850e-47 |
| Msa1125620 | Msa1164660 | 0.892290 | 1.819207e-74 | -8.615850e-47 |
| Msa1125620 | Msa1386160 | 0.911647 | 4.800928e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125620 | MtrunA17_Chr7g0266231 | 99.259 | 135 | 1 | 0 | 4 | 138 | 360 | 494 | 4.52e-91 | 272 |
| Msa1125620 | MtrunA17_Chr1g0178661 | 85.401 | 137 | 17 | 2 | 4 | 137 | 347 | 483 | 4.07e-77 | 236 |
| Msa1125620 | MtrunA17_Chr3g0100581 | 54.762 | 84 | 38 | 0 | 4 | 87 | 278 | 361 | 1.69e-24 | 97.1 |
| Msa1125620 | MtrunA17_Chr5g0445051 | 51.190 | 84 | 41 | 0 | 4 | 87 | 283 | 366 | 2.64e-23 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1125620 | AT3G52750.3 | 83.582 | 134 | 22 | 0 | 4 | 137 | 339 | 472 | 2.14e-74 | 229 |
| Msa1125620 | AT3G52750.2 | 83.582 | 134 | 22 | 0 | 4 | 137 | 339 | 472 | 2.14e-74 | 229 |
| Msa1125620 | AT3G52750.1 | 83.582 | 134 | 22 | 0 | 4 | 137 | 339 | 472 | 2.14e-74 | 229 |
| Msa1125620 | AT2G36250.4 | 80.741 | 135 | 25 | 1 | 4 | 137 | 262 | 396 | 1.39e-69 | 214 |
| Msa1125620 | AT2G36250.2 | 80.741 | 135 | 25 | 1 | 4 | 137 | 343 | 477 | 1.08e-68 | 214 |
| Msa1125620 | AT2G36250.3 | 80.741 | 135 | 25 | 1 | 4 | 137 | 343 | 477 | 1.08e-68 | 214 |
| Msa1125620 | AT2G36250.1 | 80.741 | 135 | 25 | 1 | 4 | 137 | 343 | 477 | 1.08e-68 | 214 |
| Msa1125620 | AT5G55280.1 | 51.190 | 84 | 41 | 0 | 4 | 87 | 296 | 379 | 2.15e-23 | 94.4 |
Find 65 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCACTGCTAATTTAATATT+TGG | 0.110302 | 7_3:-77077490 | Msa1125620:CDS |
| TTTACCACTGCATCAATATT+AGG | 0.115543 | 7_3:-77076429 | Msa1125620:three_prime_UTR |
| CTTCCTCGAGTATGAAATTT+TGG | 0.153986 | 7_3:-77076154 | Msa1125620:three_prime_UTR |
| CCTTTCTTCTTTAAGAATTC+CGG | 0.207755 | 7_3:+77076515 | None:intergenic |
| TTACCACTGCATCAATATTA+GGG | 0.257100 | 7_3:-77076428 | Msa1125620:three_prime_UTR |
| AGGACCTAAAATTGCTATAA+AGG | 0.267143 | 7_3:+77076364 | None:intergenic |
| CACTTTCACTGATGGTAGTT+TGG | 0.270519 | 7_3:-77076546 | Msa1125620:CDS |
| TACAAGGAATTAAAGAAGTT+GGG | 0.325613 | 7_3:+77076456 | None:intergenic |
| TAACAAGCCCTGACCATTAC+TGG | 0.348539 | 7_3:+77076243 | None:intergenic |
| CTTTCTTCTTTAAGAATTCC+GGG | 0.348604 | 7_3:+77076516 | None:intergenic |
| TGGAAAGTTCTTAGCTTTCA+TGG | 0.354898 | 7_3:+77076335 | None:intergenic |
| AGCCTCAAAACACACAAGTT+TGG | 0.378956 | 7_3:+77076315 | None:intergenic |
| CTCTATACCAATATCTAGTA+AGG | 0.381039 | 7_3:+77078400 | None:intergenic |
| GGACCTAAAATTGCTATAAA+GGG | 0.394750 | 7_3:+77076365 | None:intergenic |
| ATACAAGGAATTAAAGAAGT+TGG | 0.401561 | 7_3:+77076455 | None:intergenic |
| AGAAAATACCAGTAATGGTC+AGG | 0.403024 | 7_3:-77076251 | Msa1125620:three_prime_UTR |
| GGAAAAGAGTATTAAGCTCT+TGG | 0.405038 | 7_3:+77076479 | None:intergenic |
| CAGTCACCCTTACTAGATAT+TGG | 0.416517 | 7_3:-77078407 | Msa1125620:CDS |
| TAGGGGTAGAGTTAAACATT+TGG | 0.422128 | 7_3:-77076410 | Msa1125620:three_prime_UTR |
| ACCTTCTTCAAGTAAGCTAC+TGG | 0.435272 | 7_3:-77076208 | Msa1125620:three_prime_UTR |
| CAAACTACCATCAGTGAAAG+TGG | 0.455244 | 7_3:+77076547 | None:intergenic |
| TGGTAGTTTGGTTGAGATCC+CGG | 0.466070 | 7_3:-77076534 | Msa1125620:CDS |
| GGAATTGTATGGAACATAAC+TGG | 0.468139 | 7_3:-77078368 | Msa1125620:CDS |
| AGATCCATCACTTAGTGGTC+AGG | 0.473550 | 7_3:-77077458 | Msa1125620:intron |
| TCCAAATATTAAATTAGCAG+TGG | 0.484386 | 7_3:+77077489 | None:intergenic |
| GTAATAGATCCATCACTTAG+TGG | 0.487207 | 7_3:-77077463 | Msa1125620:CDS |
| AGCATAACATTGATTGCTAC+GGG | 0.497378 | 7_3:-77076730 | Msa1125620:CDS |
| CAATATCTAGTAAGGGTGAC+TGG | 0.502388 | 7_3:+77078408 | None:intergenic |
| CCGGAATTCTTAAAGAAGAA+AGG | 0.504581 | 7_3:-77076515 | Msa1125620:CDS |
| AAGTGATCTGACCTTGTTTG+AGG | 0.505103 | 7_3:-77078342 | Msa1125620:intron |
| AGAGGGCCACTGGAATTGTA+TGG | 0.506651 | 7_3:-77078379 | Msa1125620:CDS |
| ATCTCCTTGTGTGAGTTGAC+TGG | 0.510362 | 7_3:+77076592 | None:intergenic |
| ACCAGTAGCTTACTTGAAGA+AGG | 0.511076 | 7_3:+77076207 | None:intergenic |
| CGATCTTCCACTTTCACTGA+TGG | 0.512204 | 7_3:-77076554 | Msa1125620:CDS |
| CCAAATATTAAATTAGCAGT+GGG | 0.513309 | 7_3:+77077490 | None:intergenic |
| TACAGAGAAAATACCAGTAA+TGG | 0.525695 | 7_3:-77076256 | Msa1125620:three_prime_UTR |
| ACAAGGAATTAAAGAAGTTG+GGG | 0.540607 | 7_3:+77076457 | None:intergenic |
| AAGTGAAGCGAGACCCGTAC+AGG | 0.541037 | 7_3:-77076689 | Msa1125620:intron |
| ATTGGTATAGAGAGGGCCAC+TGG | 0.549167 | 7_3:-77078389 | Msa1125620:CDS |
| CTTAGCTTTCATGGACAACA+AGG | 0.555893 | 7_3:+77076344 | None:intergenic |
| CTTACCTGACCACTAAGTGA+TGG | 0.565428 | 7_3:+77077454 | None:intergenic |
| AATTAGCAGTGGGGTCTACA+AGG | 0.567960 | 7_3:+77077500 | None:intergenic |
| GGGTTAAGACATACCTGTAC+GGG | 0.573796 | 7_3:+77076676 | None:intergenic |
| GGAAGATCGCCGACTGACAA+CGG | 0.574950 | 7_3:+77076568 | None:intergenic |
| TACTAGATATTGGTATAGAG+AGG | 0.578242 | 7_3:-77078397 | Msa1125620:CDS |
| GAGCATAACATTGATTGCTA+CGG | 0.579728 | 7_3:-77076731 | Msa1125620:CDS |
| TACCCCTAATATTGATGCAG+TGG | 0.580979 | 7_3:+77076425 | None:intergenic |
| GTCGTATATAACTTCTGCTG+CGG | 0.589202 | 7_3:+77077522 | None:intergenic |
| GGGGTTAAGACATACCTGTA+CGG | 0.601158 | 7_3:+77076675 | None:intergenic |
| TCTATACCAATATCTAGTAA+GGG | 0.604464 | 7_3:+77078401 | None:intergenic |
| CCACCAAAATTTCATACTCG+AGG | 0.614376 | 7_3:+77076151 | None:intergenic |
| GAAAATACCAGTAATGGTCA+GGG | 0.617023 | 7_3:-77076250 | Msa1125620:three_prime_UTR |
| ACTAGATATTGGTATAGAGA+GGG | 0.622162 | 7_3:-77078396 | Msa1125620:CDS |
| TGCAGTGGTAAAGAAATACA+AGG | 0.629824 | 7_3:+77076440 | None:intergenic |
| TACCACTGCATCAATATTAG+GGG | 0.635255 | 7_3:-77076427 | Msa1125620:three_prime_UTR |
| TTGTATTGAAGGGAAAACGA+GGG | 0.636472 | 7_3:-77078456 | Msa1125620:intron |
| TACGGGATTCAAGCGTCAAG+AGG | 0.648241 | 7_3:-77076713 | Msa1125620:CDS |
| TATGTTCCATACAATTCCAG+TGG | 0.652303 | 7_3:+77078373 | None:intergenic |
| CAGGCCAGTCAACTCACACA+AGG | 0.654525 | 7_3:-77076596 | Msa1125620:CDS |
| TTTGTATTGAAGGGAAAACG+AGG | 0.683065 | 7_3:-77078457 | Msa1125620:intron |
| AAGGAGATACCGTTGTCAGT+CGG | 0.686727 | 7_3:-77076577 | Msa1125620:CDS |
| GTAGCTAACTACCTCAAACA+AGG | 0.689337 | 7_3:+77078331 | None:intergenic |
| CAAGGAATTAAAGAAGTTGG+GGG | 0.689607 | 7_3:+77076458 | None:intergenic |
| CAAATATTAAATTAGCAGTG+GGG | 0.711632 | 7_3:+77077491 | None:intergenic |
| ATTGTATGGAACATAACTGG+TGG | 0.718370 | 7_3:-77078365 | Msa1125620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATTAGAATTTGTTTA+TGG | - | chr7_3:77076168-77076187 | Msa1125620:three_prime_UTR | 10.0% |
| !!! | ATTTCTATTTTTTTTTACAT+AGG | - | chr7_3:77076440-77076459 | Msa1125620:three_prime_UTR | 10.0% |
| !! | TAAATTAACATATATCTAAT+AGG | - | chr7_3:77077373-77077392 | Msa1125620:intron | 10.0% |
| !! | AAATTAACATATATCTAATA+GGG | - | chr7_3:77077374-77077393 | Msa1125620:intron | 10.0% |
| !! | AAATAACTAGAATATTTATA+TGG | + | chr7_3:77077457-77077476 | None:intergenic | 10.0% |
| !!! | TAAATATTCTAGTTATTTTT+AGG | - | chr7_3:77077459-77077478 | Msa1125620:CDS | 10.0% |
| !! | CTAAAATAATAAAATGTTAG+AGG | - | chr7_3:77076471-77076490 | Msa1125620:exon | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr7_3:77076680-77076699 | None:intergenic | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | + | chr7_3:77076752-77076771 | None:intergenic | 15.0% |
| !!! | GTTTTTCAACAATTTTTTAA+AGG | - | chr7_3:77076782-77076801 | Msa1125620:intron | 15.0% |
| !! | AATTAACATATATCTAATAG+GGG | - | chr7_3:77077375-77077394 | Msa1125620:intron | 15.0% |
| !!! | GGTTAACATTTAAAATTATT+GGG | + | chr7_3:77077500-77077519 | None:intergenic | 15.0% |
| !!! | TGGTTAACATTTAAAATTAT+TGG | + | chr7_3:77077501-77077520 | None:intergenic | 15.0% |
| !!! | CAGTTAAAAAAAAAAACTTT+TGG | + | chr7_3:77077521-77077540 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTTTTCAATTACT+TGG | - | chr7_3:77077612-77077631 | Msa1125620:intron | 15.0% |
| !! | ATAAAATTGTGTACTAAAAA+AGG | - | chr7_3:77078517-77078536 | Msa1125620:intron | 15.0% |
| !! | TAAAATTGTGTACTAAAAAA+GGG | - | chr7_3:77078518-77078537 | Msa1125620:intron | 15.0% |
| !! | TAAAAAAAAAAATGTTAGCG+AGG | - | chr7_3:77076271-77076290 | Msa1125620:three_prime_UTR | 20.0% |
| !!! | ATAAAACGTTGATTAAATGT+AGG | - | chr7_3:77076344-77076363 | Msa1125620:three_prime_UTR | 20.0% |
| !!! | CTATTTTTTTTTACATAGGA+AGG | - | chr7_3:77076444-77076463 | Msa1125620:three_prime_UTR | 20.0% |
| !!! | TTCTTTGGACAATTTTTTTT+AGG | - | chr7_3:77076605-77076624 | Msa1125620:intron | 20.0% |
| !!! | TCTTTGGACAATTTTTTTTA+GGG | - | chr7_3:77076606-77076625 | Msa1125620:intron | 20.0% |
| !!! | TTTAGGGTTAATTATGTTTT+TGG | - | chr7_3:77076622-77076641 | Msa1125620:intron | 20.0% |
| !! | GTGTTAAGAATGTTATTAAA+AGG | - | chr7_3:77076806-77076825 | Msa1125620:intron | 20.0% |
| !! | AACAAATGATAAATCTGTAA+GGG | + | chr7_3:77077154-77077173 | None:intergenic | 20.0% |
| !! | TAACAAATGATAAATCTGTA+AGG | + | chr7_3:77077155-77077174 | None:intergenic | 20.0% |
| !! | AATAAACTTGTGAAACAAAA+AGG | + | chr7_3:77077230-77077249 | None:intergenic | 20.0% |
| !! | TTCAAAATTTAGATCATCTA+AGG | - | chr7_3:77077263-77077282 | Msa1125620:intron | 20.0% |
| !!! | GTTTTTTTTTTTAACTGACT+TGG | - | chr7_3:77077524-77077543 | Msa1125620:CDS | 20.0% |
| !!! | ATATTTTTTTGTTCACAGTA+GGG | + | chr7_3:77077793-77077812 | None:intergenic | 20.0% |
| !!! | TATATTTTTTTGTTCACAGT+AGG | + | chr7_3:77077794-77077813 | None:intergenic | 20.0% |
| !! | TTCATACAAATAACATTAGA+GGG | + | chr7_3:77078037-77078056 | None:intergenic | 20.0% |
| !! | TTTCATACAAATAACATTAG+AGG | + | chr7_3:77078038-77078057 | None:intergenic | 20.0% |
| !!! | ATATTTTTCCTGAAATGAAT+TGG | - | chr7_3:77078088-77078107 | Msa1125620:intron | 20.0% |
| !!! | TATTTTTCCTGAAATGAATT+GGG | - | chr7_3:77078089-77078108 | Msa1125620:intron | 20.0% |
| !!! | AATTTAGAACTTTTGTATCT+AGG | + | chr7_3:77078168-77078187 | None:intergenic | 20.0% |
| !!! | AAAGTTCTAAATTCTTTAAC+CGG | - | chr7_3:77078175-77078194 | Msa1125620:intron | 20.0% |
| !!! | TTAAATAGAAAGAGTATAAG+AGG | + | chr7_3:77078256-77078275 | None:intergenic | 20.0% |
| !!! | ATGTATGTGTTATTTAAGTA+GGG | - | chr7_3:77078425-77078444 | Msa1125620:CDS | 20.0% |
| ! | TTAGAGTTACAAATAGACTT+GGG | - | chr7_3:77076537-77076556 | Msa1125620:CDS | 25.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | + | chr7_3:77076741-77076760 | None:intergenic | 25.0% |
| ! | TTCAATTATACATGTAACCA+TGG | + | chr7_3:77076949-77076968 | None:intergenic | 25.0% |
| !! | TAGCTTCTTTTTGTATTGAA+GGG | - | chr7_3:77076985-77077004 | Msa1125620:intron | 25.0% |
| ! | TCTATACCAATATCTAGTAA+GGG | + | chr7_3:77077053-77077072 | None:intergenic | 25.0% |
| !! | CTAAATTTTGAATCAACAGA+GGG | + | chr7_3:77077255-77077274 | None:intergenic | 25.0% |
| !! | TCTAAATTTTGAATCAACAG+AGG | + | chr7_3:77077256-77077275 | None:intergenic | 25.0% |
| ! | GATAACACTACTATATTAAC+TGG | + | chr7_3:77077699-77077718 | None:intergenic | 25.0% |
| !!! | TATAAACTTGAGTTTTGAAG+TGG | - | chr7_3:77077740-77077759 | Msa1125620:intron | 25.0% |
| ! | CATTTACCTGTACATTATAA+AGG | + | chr7_3:77077909-77077928 | None:intergenic | 25.0% |
| ! | CAAATATTAAATTAGCAGTG+GGG | + | chr7_3:77077963-77077982 | None:intergenic | 25.0% |
| ! | CCAAATATTAAATTAGCAGT+GGG | + | chr7_3:77077964-77077983 | None:intergenic | 25.0% |
| ! | TCCAAATATTAAATTAGCAG+TGG | + | chr7_3:77077965-77077984 | None:intergenic | 25.0% |
| !!! | AAGTTCTAAATTCTTTAACC+GGG | - | chr7_3:77078176-77078195 | Msa1125620:intron | 25.0% |
| ! | CAATATTTCCGAACAAAAAA+TGG | + | chr7_3:77078289-77078308 | None:intergenic | 25.0% |
| !! | AAATGTTTTGTACAGAATAG+AGG | - | chr7_3:77078400-77078419 | Msa1125620:CDS | 25.0% |
| !!! | CATGTATGTGTTATTTAAGT+AGG | - | chr7_3:77078424-77078443 | Msa1125620:CDS | 25.0% |
| ! | GAACATTGTTAAACTCATTA+TGG | + | chr7_3:77078477-77078496 | None:intergenic | 25.0% |
| !!! | CTTTGAGTTAACTTTTTTCA+TGG | + | chr7_3:77078629-77078648 | None:intergenic | 25.0% |
| ! | TTGACAAAAACCACAATTAT+GGG | + | chr7_3:77078830-77078849 | None:intergenic | 25.0% |
| ! | TTTGACAAAAACCACAATTA+TGG | + | chr7_3:77078831-77078850 | None:intergenic | 25.0% |
| ! | TACAAGGAATTAAAGAAGTT+GGG | + | chr7_3:77078998-77079017 | None:intergenic | 25.0% |
| ! | ATACAAGGAATTAAAGAAGT+TGG | + | chr7_3:77078999-77079018 | None:intergenic | 25.0% |
| ! | AAACGTTGATTAAATGTAGG+AGG | - | chr7_3:77076347-77076366 | Msa1125620:three_prime_UTR | 30.0% |
| GTTAGAGTTACAAATAGACT+TGG | - | chr7_3:77076536-77076555 | Msa1125620:CDS | 30.0% | |
| AACGTAGTCTGTAATTTCTT+TGG | - | chr7_3:77076590-77076609 | Msa1125620:CDS | 30.0% | |
| ! | TACAAGGTCGTAATTTTGTA+GGG | + | chr7_3:77076649-77076668 | None:intergenic | 30.0% |
| ! | TTACAAGGTCGTAATTTTGT+AGG | + | chr7_3:77076650-77076669 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTACA+AGG | + | chr7_3:77076665-77076684 | None:intergenic | 30.0% | |
| !!! | GAGTGCAGAAATTTTTTGTA+GGG | + | chr7_3:77076709-77076728 | None:intergenic | 30.0% |
| !!! | TGAGTGCAGAAATTTTTTGT+AGG | + | chr7_3:77076710-77076729 | None:intergenic | 30.0% |
| ! | CTAGCTTCTTTTTGTATTGA+AGG | - | chr7_3:77076984-77077003 | Msa1125620:intron | 30.0% |
| CTCTATACCAATATCTAGTA+AGG | + | chr7_3:77077054-77077073 | None:intergenic | 30.0% | |
| TACTAGATATTGGTATAGAG+AGG | - | chr7_3:77077054-77077073 | Msa1125620:intron | 30.0% | |
| ACTAGATATTGGTATAGAGA+GGG | - | chr7_3:77077055-77077074 | Msa1125620:intron | 30.0% | |
| AAACTTGTGAAACAAAAAGG+AGG | + | chr7_3:77077227-77077246 | None:intergenic | 30.0% | |
| TTTAGATCATCTAAGGATCA+TGG | - | chr7_3:77077270-77077289 | Msa1125620:intron | 30.0% | |
| TTAGATCATCTAAGGATCAT+GGG | - | chr7_3:77077271-77077290 | Msa1125620:intron | 30.0% | |
| TATAGTAATGATAGAACACC+AGG | + | chr7_3:77077553-77077572 | None:intergenic | 30.0% | |
| ! | TACTATATTAACTGGACTAG+AGG | + | chr7_3:77077691-77077710 | None:intergenic | 30.0% |
| CAAGTTTATAAATAGCTCAC+AGG | + | chr7_3:77077730-77077749 | None:intergenic | 30.0% | |
| TCATACTCTTGTATCTAAGA+TGG | - | chr7_3:77077882-77077901 | Msa1125620:intron | 30.0% | |
| CCCACTGCTAATTTAATATT+TGG | - | chr7_3:77077961-77077980 | Msa1125620:intron | 30.0% | |
| !!! | ACTGAACACCATTTTTTGTT+CGG | - | chr7_3:77078278-77078297 | Msa1125620:intron | 30.0% |
| TCTATTGTTACGGAATAGAA+GGG | - | chr7_3:77078352-77078371 | Msa1125620:CDS | 30.0% | |
| GTTAAACTCATTATGGAACA+TGG | + | chr7_3:77078470-77078489 | None:intergenic | 30.0% | |
| TACATGAAACCTACCATATA+TGG | + | chr7_3:77078553-77078572 | None:intergenic | 30.0% | |
| CTATATGAAACCAAATGACA+TGG | + | chr7_3:77078698-77078717 | None:intergenic | 30.0% | |
| ! | CATGTCATTTGGTTTCATAT+AGG | - | chr7_3:77078696-77078715 | Msa1125620:intron | 30.0% |
| ! | CTTTCTTCTTTAAGAATTCC+GGG | + | chr7_3:77078938-77078957 | None:intergenic | 30.0% |
| ! | CCTTTCTTCTTTAAGAATTC+CGG | + | chr7_3:77078939-77078958 | None:intergenic | 30.0% |
| ACAAGGAATTAAAGAAGTTG+GGG | + | chr7_3:77078997-77079016 | None:intergenic | 30.0% | |
| TTTACCACTGCATCAATATT+AGG | - | chr7_3:77079022-77079041 | Msa1125620:intron | 30.0% | |
| TTACCACTGCATCAATATTA+GGG | - | chr7_3:77079023-77079042 | Msa1125620:intron | 30.0% | |
| ATTGCTATAAAGGGCAAAAA+CGG | + | chr7_3:77079080-77079099 | None:intergenic | 30.0% | |
| ! | TTGCCCTTTATAGCAATTTT+AGG | - | chr7_3:77079083-77079102 | Msa1125620:intron | 30.0% |
| GGACCTAAAATTGCTATAAA+GGG | + | chr7_3:77079089-77079108 | None:intergenic | 30.0% | |
| AGGACCTAAAATTGCTATAA+AGG | + | chr7_3:77079090-77079109 | None:intergenic | 30.0% | |
| TACAGAGAAAATACCAGTAA+TGG | - | chr7_3:77079195-77079214 | Msa1125620:intron | 30.0% | |
| TATATCCACACCTAACCATA+TGG | + | chr7_3:77076407-77076426 | None:intergenic | 35.0% | |
| TTTGTATTGAAGGGAAAACG+AGG | - | chr7_3:77076994-77077013 | Msa1125620:intron | 35.0% | |
| TTGTATTGAAGGGAAAACGA+GGG | - | chr7_3:77076995-77077014 | Msa1125620:intron | 35.0% | |
| TATGTTCCATACAATTCCAG+TGG | + | chr7_3:77077081-77077100 | None:intergenic | 35.0% | |
| GGAATTGTATGGAACATAAC+TGG | - | chr7_3:77077083-77077102 | Msa1125620:intron | 35.0% | |
| ATTGTATGGAACATAACTGG+TGG | - | chr7_3:77077086-77077105 | Msa1125620:intron | 35.0% | |
| ATAAATCTGTAAGGGTCAGA+GGG | + | chr7_3:77077146-77077165 | None:intergenic | 35.0% | |
| TAATTCGCATGCTGTTGTAA+GGG | + | chr7_3:77077340-77077359 | None:intergenic | 35.0% | |
| TTACTTGGAAACAAACACAC+TGG | - | chr7_3:77077627-77077646 | Msa1125620:intron | 35.0% | |
| !!! | AACTTGAGTTTTGAAGTGGA+TGG | - | chr7_3:77077744-77077763 | Msa1125620:intron | 35.0% |
| ! | TGGTTGTTTAAAGCTTGCTT+TGG | - | chr7_3:77077764-77077783 | Msa1125620:intron | 35.0% |
| GATGGTCCTTTATAATGTAC+AGG | - | chr7_3:77077900-77077919 | Msa1125620:intron | 35.0% | |
| GTAATAGATCCATCACTTAG+TGG | - | chr7_3:77077988-77078007 | Msa1125620:intron | 35.0% | |
| AATGTTGCCCAATTCATTTC+AGG | + | chr7_3:77078099-77078118 | None:intergenic | 35.0% | |
| GCAGAAAATCTACTCTTTCT+TGG | + | chr7_3:77078138-77078157 | None:intergenic | 35.0% | |
| ! | TGTCAATGAAATCTAGCTTC+TGG | - | chr7_3:77078224-77078243 | Msa1125620:intron | 35.0% |
| ATTTAAACAAACCTGACGAG+AGG | + | chr7_3:77078318-77078337 | None:intergenic | 35.0% | |
| CTTCTATTCCGTAACAATAG+AGG | + | chr7_3:77078353-77078372 | None:intergenic | 35.0% | |
| CTCTATTGTTACGGAATAGA+AGG | - | chr7_3:77078351-77078370 | Msa1125620:CDS | 35.0% | |
| !! | AACAATGTTCTCTAGAACGA+AGG | - | chr7_3:77078487-77078506 | Msa1125620:intron | 35.0% |
| AATGTGTGACCATATATGGT+AGG | - | chr7_3:77078541-77078560 | Msa1125620:intron | 35.0% | |
| ! | GAGCATAACATTGATTGCTA+CGG | - | chr7_3:77078720-77078739 | Msa1125620:intron | 35.0% |
| ! | AGCATAACATTGATTGCTAC+GGG | - | chr7_3:77078721-77078740 | Msa1125620:intron | 35.0% |
| TATGGGTATGACATCATAGA+GGG | + | chr7_3:77078813-77078832 | None:intergenic | 35.0% | |
| TTATGGGTATGACATCATAG+AGG | + | chr7_3:77078814-77078833 | None:intergenic | 35.0% | |
| TGATGTCATACCCATAATTG+TGG | - | chr7_3:77078817-77078836 | Msa1125620:intron | 35.0% | |
| ! | GTGGTTTTTGTCAAAAATGC+AGG | - | chr7_3:77078836-77078855 | Msa1125620:intron | 35.0% |
| CCGGAATTCTTAAAGAAGAA+AGG | - | chr7_3:77078936-77078955 | Msa1125620:intron | 35.0% | |
| !! | GGAAAAGAGTATTAAGCTCT+TGG | + | chr7_3:77078975-77078994 | None:intergenic | 35.0% |
| CAAGGAATTAAAGAAGTTGG+GGG | + | chr7_3:77078996-77079015 | None:intergenic | 35.0% | |
| TGCAGTGGTAAAGAAATACA+AGG | + | chr7_3:77079014-77079033 | None:intergenic | 35.0% | |
| TACCACTGCATCAATATTAG+GGG | - | chr7_3:77079024-77079043 | Msa1125620:intron | 35.0% | |
| TAGGGGTAGAGTTAAACATT+TGG | - | chr7_3:77079041-77079060 | Msa1125620:intron | 35.0% | |
| TTGCTATAAAGGGCAAAAAC+GGG | + | chr7_3:77079079-77079098 | None:intergenic | 35.0% | |
| ! | TGGAAAGTTCTTAGCTTTCA+TGG | + | chr7_3:77079119-77079138 | None:intergenic | 35.0% |
| ! | TTCCAAACTTGTGTGTTTTG+AGG | - | chr7_3:77079134-77079153 | Msa1125620:intron | 35.0% |
| AGAAAATACCAGTAATGGTC+AGG | - | chr7_3:77079200-77079219 | Msa1125620:intron | 35.0% | |
| GAAAATACCAGTAATGGTCA+GGG | - | chr7_3:77079201-77079220 | Msa1125620:intron | 35.0% | |
| ! | CTTCCTCGAGTATGAAATTT+TGG | - | chr7_3:77079297-77079316 | Msa1125620:intron | 35.0% |
| AGGTATGCATGTGTCAATGT+TGG | - | chr7_3:77076367-77076386 | Msa1125620:three_prime_UTR | 40.0% | |
| GATGGATGTACCATATGGTT+AGG | - | chr7_3:77076394-77076413 | Msa1125620:three_prime_UTR | 40.0% | |
| ATGTACCATATGGTTAGGTG+TGG | - | chr7_3:77076399-77076418 | Msa1125620:three_prime_UTR | 40.0% | |
| CAATATCTAGTAAGGGTGAC+TGG | + | chr7_3:77077046-77077065 | None:intergenic | 40.0% | |
| CAGTCACCCTTACTAGATAT+TGG | - | chr7_3:77077044-77077063 | Msa1125620:intron | 40.0% | |
| ! | AAGTGATCTGACCTTGTTTG+AGG | - | chr7_3:77077109-77077128 | Msa1125620:intron | 40.0% |
| GTAGCTAACTACCTCAAACA+AGG | + | chr7_3:77077123-77077142 | None:intergenic | 40.0% | |
| TAAATCTGTAAGGGTCAGAG+GGG | + | chr7_3:77077145-77077164 | None:intergenic | 40.0% | |
| GATAAATCTGTAAGGGTCAG+AGG | + | chr7_3:77077147-77077166 | None:intergenic | 40.0% | |
| AATTCGCATGCTGTTGTAAG+GGG | + | chr7_3:77077339-77077358 | None:intergenic | 40.0% | |
| GTAATTCGCATGCTGTTGTA+AGG | + | chr7_3:77077341-77077360 | None:intergenic | 40.0% | |
| !! | AGGGGCATTTCGAGAATTAT+AGG | - | chr7_3:77077393-77077412 | Msa1125620:intron | 40.0% |
| !!! | TTTTAACTGACTTGGTCTCC+TGG | - | chr7_3:77077532-77077551 | Msa1125620:CDS | 40.0% |
| CTGGCTGAAAACGATATTAC+AGG | + | chr7_3:77077578-77077597 | None:intergenic | 40.0% | |
| AAAGAAAATACATCCCTGCC+TGG | + | chr7_3:77077601-77077620 | None:intergenic | 40.0% | |
| GTCGTATATAACTTCTGCTG+CGG | + | chr7_3:77077932-77077951 | None:intergenic | 40.0% | |
| ! | AATGAAATCTAGCTTCTGGC+TGG | - | chr7_3:77078228-77078247 | Msa1125620:intron | 40.0% |
| CGCAAACACCTCTATTGTTA+CGG | - | chr7_3:77078342-77078361 | Msa1125620:intron | 40.0% | |
| ! | AAGGGAAGTGTGTGTAATTG+AGG | - | chr7_3:77078370-77078389 | Msa1125620:CDS | 40.0% |
| ! | AGGGAAGTGTGTGTAATTGA+GGG | - | chr7_3:77078371-77078390 | Msa1125620:CDS | 40.0% |
| AGGGAATGTGTGACCATATA+TGG | - | chr7_3:77078537-77078556 | Msa1125620:intron | 40.0% | |
| CTGATGTGAACCATGTCATT+TGG | - | chr7_3:77078685-77078704 | Msa1125620:intron | 40.0% | |
| ATGGGTATGACATCATAGAG+GGG | + | chr7_3:77078812-77078831 | None:intergenic | 40.0% | |
| CAAACTACCATCAGTGAAAG+TGG | + | chr7_3:77078907-77078926 | None:intergenic | 40.0% | |
| CACTTTCACTGATGGTAGTT+TGG | - | chr7_3:77078905-77078924 | Msa1125620:intron | 40.0% | |
| TACCCCTAATATTGATGCAG+TGG | + | chr7_3:77079029-77079048 | None:intergenic | 40.0% | |
| ! | CTTAGCTTTCATGGACAACA+AGG | + | chr7_3:77079110-77079129 | None:intergenic | 40.0% |
| AGCCTCAAAACACACAAGTT+TGG | + | chr7_3:77079139-77079158 | None:intergenic | 40.0% | |
| ACCTTCTTCAAGTAAGCTAC+TGG | - | chr7_3:77079243-77079262 | Msa1125620:intron | 40.0% | |
| ACCAGTAGCTTACTTGAAGA+AGG | + | chr7_3:77079247-77079266 | None:intergenic | 40.0% | |
| CCACCAAAATTTCATACTCG+AGG | + | chr7_3:77079303-77079322 | None:intergenic | 40.0% | |
| ! | CCTCGAGTATGAAATTTTGG+TGG | - | chr7_3:77079300-77079319 | Msa1125620:intron | 40.0% |
| TGCATGTGTCAATGTTGGCA+TGG | - | chr7_3:77076372-77076391 | Msa1125620:three_prime_UTR | 45.0% | |
| TGTGTCAATGTTGGCATGGA+TGG | - | chr7_3:77076376-77076395 | Msa1125620:three_prime_UTR | 45.0% | |
| GCATGGATGGATGTACCATA+TGG | - | chr7_3:77076389-77076408 | Msa1125620:three_prime_UTR | 45.0% | |
| CATCTAAGGATCATGGGAAG+TGG | - | chr7_3:77077277-77077296 | Msa1125620:intron | 45.0% | |
| ATTCGCATGCTGTTGTAAGG+GGG | + | chr7_3:77077338-77077357 | None:intergenic | 45.0% | |
| ! | AATATCGTTTTCAGCCAGCC+AGG | - | chr7_3:77077580-77077599 | Msa1125620:intron | 45.0% |
| ! | TTAACTGGACTAGAGGACAG+AGG | + | chr7_3:77077684-77077703 | None:intergenic | 45.0% |
| AATTAGCAGTGGGGTCTACA+AGG | + | chr7_3:77077954-77077973 | None:intergenic | 45.0% | |
| AGATCCATCACTTAGTGGTC+AGG | - | chr7_3:77077993-77078012 | Msa1125620:intron | 45.0% | |
| CTTACCTGACCACTAAGTGA+TGG | + | chr7_3:77078000-77078019 | None:intergenic | 45.0% | |
| TGAATTGGGCAACATTACCC+TGG | - | chr7_3:77078103-77078122 | Msa1125620:intron | 45.0% | |
| TTTCTTGGCACACTACACCA+GGG | + | chr7_3:77078123-77078142 | None:intergenic | 45.0% | |
| CACAACAGAAAGAGATGACC+CGG | + | chr7_3:77078197-77078216 | None:intergenic | 45.0% | |
| AAACAAACCTGACGAGAGGT+GGG | + | chr7_3:77078314-77078333 | None:intergenic | 45.0% | |
| TAAACAAACCTGACGAGAGG+TGG | + | chr7_3:77078315-77078334 | None:intergenic | 45.0% | |
| GGGTTAAGACATACCTGTAC+GGG | + | chr7_3:77078778-77078797 | None:intergenic | 45.0% | |
| GGGGTTAAGACATACCTGTA+CGG | + | chr7_3:77078779-77078798 | None:intergenic | 45.0% | |
| TGGGTATGACATCATAGAGG+GGG | + | chr7_3:77078811-77078830 | None:intergenic | 45.0% | |
| ! | ATCTCCTTGTGTGAGTTGAC+TGG | + | chr7_3:77078862-77078881 | None:intergenic | 45.0% |
| AAGGAGATACCGTTGTCAGT+CGG | - | chr7_3:77078874-77078893 | Msa1125620:intron | 45.0% | |
| CGATCTTCCACTTTCACTGA+TGG | - | chr7_3:77078897-77078916 | Msa1125620:intron | 45.0% | |
| TGGTAGTTTGGTTGAGATCC+CGG | - | chr7_3:77078917-77078936 | Msa1125620:intron | 45.0% | |
| TAACAAGCCCTGACCATTAC+TGG | + | chr7_3:77079211-77079230 | None:intergenic | 45.0% | |
| ATTGGTATAGAGAGGGCCAC+TGG | - | chr7_3:77077062-77077081 | Msa1125620:intron | 50.0% | |
| AGAGGGCCACTGGAATTGTA+TGG | - | chr7_3:77077072-77077091 | Msa1125620:intron | 50.0% | |
| AAGGATCATGGGAAGTGGTC+AGG | - | chr7_3:77077282-77077301 | Msa1125620:intron | 50.0% | |
| TTCGCATGCTGTTGTAAGGG+GGG | + | chr7_3:77077337-77077356 | None:intergenic | 50.0% | |
| AAAATACATCCCTGCCTGGC+TGG | + | chr7_3:77077597-77077616 | None:intergenic | 50.0% | |
| CTTTCTTGGCACACTACACC+AGG | + | chr7_3:77078124-77078143 | None:intergenic | 50.0% | |
| TACGGGATTCAAGCGTCAAG+AGG | - | chr7_3:77078738-77078757 | Msa1125620:intron | 50.0% | |
| ATGACATCATAGAGGGGGGA+GGG | + | chr7_3:77078806-77078825 | None:intergenic | 50.0% | |
| TATGACATCATAGAGGGGGG+AGG | + | chr7_3:77078807-77078826 | None:intergenic | 50.0% | |
| GGGTATGACATCATAGAGGG+GGG | + | chr7_3:77078810-77078829 | None:intergenic | 50.0% | |
| TCGCATGCTGTTGTAAGGGG+GGG | + | chr7_3:77077336-77077355 | None:intergenic | 55.0% | |
| TATTGCACCCACCTCTCGTC+AGG | - | chr7_3:77078304-77078323 | Msa1125620:intron | 55.0% | |
| AAGTGAAGCGAGACCCGTAC+AGG | - | chr7_3:77078762-77078781 | Msa1125620:intron | 55.0% | |
| TCATAGAGGGGGGAGGGTTA+GGG | + | chr7_3:77078800-77078819 | None:intergenic | 55.0% | |
| ATCATAGAGGGGGGAGGGTT+AGG | + | chr7_3:77078801-77078820 | None:intergenic | 55.0% | |
| CAGGCCAGTCAACTCACACA+AGG | - | chr7_3:77078855-77078874 | Msa1125620:intron | 55.0% | |
| ! | GGAAGATCGCCGACTGACAA+CGG | + | chr7_3:77078886-77078905 | None:intergenic | 55.0% |
| ! | TCGTTTTCAGCCAGCCAGGC+AGG | - | chr7_3:77077584-77077603 | Msa1125620:intron | 60.0% |
| ! | CGTTTTCAGCCAGCCAGGCA+GGG | - | chr7_3:77077585-77077604 | Msa1125620:intron | 60.0% |
| ATAGAGGGGGGAGGGTTAGG+GGG | + | chr7_3:77078798-77078817 | None:intergenic | 60.0% | |
| CATAGAGGGGGGAGGGTTAG+GGG | + | chr7_3:77078799-77078818 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 77076137 | 77079336 | 77076137 | ID=Msa1125620;Name=Msa1125620 |
| chr7_3 | mRNA | 77076137 | 77079336 | 77076137 | ID=Msa1125620-mRNA-1;Parent=Msa1125620;Name=Msa1125620-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.75|0.6|0.8|1|1|5|353|138 |
| chr7_3 | exon | 77076137 | 77076615 | 77076137 | ID=Msa1125620-mRNA-1:exon:21157;Parent=Msa1125620-mRNA-1 |
| chr7_3 | exon | 77076690 | 77076755 | 77076690 | ID=Msa1125620-mRNA-1:exon:21156;Parent=Msa1125620-mRNA-1 |
| chr7_3 | exon | 77077459 | 77077551 | 77077459 | ID=Msa1125620-mRNA-1:exon:21155;Parent=Msa1125620-mRNA-1 |
| chr7_3 | exon | 77078343 | 77078467 | 77078343 | ID=Msa1125620-mRNA-1:exon:21154;Parent=Msa1125620-mRNA-1 |
| chr7_3 | exon | 77079330 | 77079336 | 77079330 | ID=Msa1125620-mRNA-1:exon:21153;Parent=Msa1125620-mRNA-1 |
| chr7_3 | CDS | 77079330 | 77079336 | 77079330 | ID=Msa1125620-mRNA-1:cds;Parent=Msa1125620-mRNA-1 |
| chr7_3 | CDS | 77078343 | 77078467 | 77078343 | ID=Msa1125620-mRNA-1:cds;Parent=Msa1125620-mRNA-1 |
| chr7_3 | CDS | 77077459 | 77077551 | 77077459 | ID=Msa1125620-mRNA-1:cds;Parent=Msa1125620-mRNA-1 |
| chr7_3 | CDS | 77076690 | 77076755 | 77076690 | ID=Msa1125620-mRNA-1:cds;Parent=Msa1125620-mRNA-1 |
| chr7_3 | CDS | 77076490 | 77076615 | 77076490 | ID=Msa1125620-mRNA-1:cds;Parent=Msa1125620-mRNA-1 |
| chr7_3 | three_prime_UTR | 77076137 | 77076489 | 77076137 | ID=Msa1125620-mRNA-1:three_prime_utr;Parent=Msa1125620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
