Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386160 | XP_003625812.1 | 97.374 | 495 | 12 | 1 | 1 | 495 | 1 | 494 | 0.0 | 976 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386160 | sp|O82533|FTZ21_ARATH | 74.338 | 491 | 104 | 6 | 8 | 494 | 5 | 477 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386160 | G7L633 | 97.374 | 495 | 12 | 1 | 1 | 495 | 1 | 494 | 0.0 | 976 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1386160 | Msa1422290 | 0.810482 | 1.127734e-50 | -8.615850e-47 |
| Msa0143180 | Msa1386160 | 0.995235 | 2.715311e-214 | -8.615850e-47 |
| Msa1125620 | Msa1386160 | 0.911647 | 4.800928e-83 | -8.615850e-47 |
| Msa1164660 | Msa1386160 | 0.993242 | 2.135981e-198 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386160 | MtrunA17_Chr7g0266231 | 97.374 | 495 | 12 | 1 | 1 | 495 | 1 | 494 | 0.0 | 976 |
| Msa1386160 | MtrunA17_Chr1g0178661 | 77.218 | 496 | 91 | 8 | 8 | 494 | 1 | 483 | 0.0 | 671 |
| Msa1386160 | MtrunA17_Chr3g0100581 | 61.290 | 310 | 118 | 1 | 135 | 444 | 54 | 361 | 6.45e-111 | 335 |
| Msa1386160 | MtrunA17_Chr5g0445051 | 58.644 | 295 | 119 | 2 | 151 | 444 | 74 | 366 | 5.94e-108 | 327 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386160 | AT2G36250.2 | 74.338 | 491 | 104 | 6 | 8 | 494 | 5 | 477 | 0.0 | 652 |
| Msa1386160 | AT2G36250.3 | 74.338 | 491 | 104 | 6 | 8 | 494 | 5 | 477 | 0.0 | 652 |
| Msa1386160 | AT2G36250.1 | 74.338 | 491 | 104 | 6 | 8 | 494 | 5 | 477 | 0.0 | 652 |
| Msa1386160 | AT3G52750.3 | 72.746 | 488 | 112 | 6 | 8 | 494 | 5 | 472 | 0.0 | 642 |
| Msa1386160 | AT3G52750.2 | 72.746 | 488 | 112 | 6 | 8 | 494 | 5 | 472 | 0.0 | 642 |
| Msa1386160 | AT3G52750.1 | 72.746 | 488 | 112 | 6 | 8 | 494 | 5 | 472 | 0.0 | 642 |
| Msa1386160 | AT2G36250.4 | 84.211 | 399 | 59 | 2 | 97 | 494 | 1 | 396 | 0.0 | 617 |
| Msa1386160 | AT3G52750.4 | 68.627 | 357 | 91 | 6 | 8 | 363 | 5 | 341 | 4.60e-146 | 422 |
| Msa1386160 | AT5G55280.1 | 56.000 | 350 | 142 | 4 | 95 | 444 | 42 | 379 | 1.19e-107 | 327 |
Find 179 sgRNAs with CRISPR-Local
Find 428 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCACTGCTAATTTAATATT+TGG | 0.110302 | tig0020787:+73364 | Msa1386160:CDS |
| TTTACCACTGCATCAATATT+AGG | 0.115543 | tig0020787:+74425 | Msa1386160:three_prime_UTR |
| CTTCCTCGAGTATGAAATTT+TGG | 0.153986 | tig0020787:+74700 | Msa1386160:three_prime_UTR |
| CCTTTCTTCTTTAAGAATTC+CGG | 0.207755 | tig0020787:-74339 | None:intergenic |
| TCAATACAAGAGGCGGTTTA+TGG | 0.232431 | tig0020787:+69784 | Msa1386160:CDS |
| TAATGCAGGTTCTTCACTTA+TGG | 0.232861 | tig0020787:+71833 | Msa1386160:CDS |
| GGACCAACACTGTGCGAATT+TGG | 0.235876 | tig0020787:-69358 | None:intergenic |
| AAAATTAATGAAAATAAGTT+TGG | 0.239550 | tig0020787:+69277 | Msa1386160:CDS |
| GCAGGGGTGCTTGCTGTTAA+TGG | 0.239998 | tig0020787:+69202 | Msa1386160:CDS |
| AAGCACCCCTGCTGAATTTC+TGG | 0.255111 | tig0020787:-69191 | None:intergenic |
| TTACCACTGCATCAATATTA+GGG | 0.257100 | tig0020787:+74426 | Msa1386160:three_prime_UTR |
| TGTCATTTGGAATAACTATC+AGG | 0.257169 | tig0020787:-71273 | None:intergenic |
| AGGACCTAAAATTGCTATAA+AGG | 0.267143 | tig0020787:-74490 | None:intergenic |
| CACTTTCACTGATGGTAGTT+TGG | 0.270519 | tig0020787:+74308 | Msa1386160:CDS |
| AGATTGAATGCTTCAGTTAC+AGG | 0.271861 | tig0020787:-71325 | None:intergenic |
| GTTATTGGTGTGGGTGGTGG+TGG | 0.281129 | tig0020787:+69562 | Msa1386160:CDS |
| CCTGAGATTTCGATGCTTAG+AGG | 0.292393 | tig0020787:+69418 | Msa1386160:CDS |
| CGATGAATGGTGTGGAGTTT+TGG | 0.299318 | tig0020787:+69617 | Msa1386160:CDS |
| GAAGCAAAGATTAAGGTTAT+TGG | 0.303876 | tig0020787:+69547 | Msa1386160:CDS |
| TTATAATGAAGCAAAGATTA+AGG | 0.307633 | tig0020787:+69540 | Msa1386160:CDS |
| GGCGGTTTATGGAGCTGATA+TGG | 0.325227 | tig0020787:+69795 | Msa1386160:CDS |
| TACAAGGAATTAAAGAAGTT+GGG | 0.325613 | tig0020787:-74398 | None:intergenic |
| GATTGTTAATACTGATGTTC+AGG | 0.330888 | tig0020787:+69639 | Msa1386160:CDS |
| TGCCGATGTTAGAGCTATAA+TGG | 0.340769 | tig0020787:+71809 | Msa1386160:CDS |
| TAACAAGCCCTGACCATTAC+TGG | 0.348539 | tig0020787:-74611 | None:intergenic |
| CTTTCTTCTTTAAGAATTCC+GGG | 0.348604 | tig0020787:-74338 | None:intergenic |
| TGGAAAGTTCTTAGCTTTCA+TGG | 0.354898 | tig0020787:-74519 | None:intergenic |
| AAGGTTATTGGTGTGGGTGG+TGG | 0.356161 | tig0020787:+69559 | Msa1386160:CDS |
| AATGCAGGTTCTTCACTTAT+GGG | 0.360231 | tig0020787:+71834 | Msa1386160:CDS |
| GCTGGAATGGGTGGAGGAAC+TGG | 0.363731 | tig0020787:+71100 | Msa1386160:CDS |
| CAAAGTGTGGAAGATGCAAT+TGG | 0.365810 | tig0020787:-69077 | None:intergenic |
| TGGCATTTCTGATATTATTA+CGG | 0.367696 | tig0020787:+71378 | Msa1386160:CDS |
| GCAGTAAGCAACTTGTCATT+TGG | 0.370958 | tig0020787:-71286 | None:intergenic |
| ACAACCCCTTTCTCGTTTGA+AGG | 0.376860 | tig0020787:+71190 | Msa1386160:CDS |
| AGCCTCAAAACACACAAGTT+TGG | 0.378956 | tig0020787:-74539 | None:intergenic |
| CTCTATACCAATATCTAGTA+AGG | 0.381039 | tig0020787:-72454 | None:intergenic |
| GGAATTCGCAGGTGCAAAAC+AGG | 0.392685 | tig0020787:-69170 | None:intergenic |
| GGACCTAAAATTGCTATAAA+GGG | 0.394750 | tig0020787:-74489 | None:intergenic |
| GGTGCAGCTCCGGTTATTGC+TGG | 0.401104 | tig0020787:+71127 | Msa1386160:CDS |
| ATACAAGGAATTAAAGAAGT+TGG | 0.401561 | tig0020787:-74399 | None:intergenic |
| AGAAAATACCAGTAATGGTC+AGG | 0.403024 | tig0020787:+74603 | Msa1386160:three_prime_UTR |
| GGAAAAGAGTATTAAGCTCT+TGG | 0.405038 | tig0020787:-74375 | None:intergenic |
| CAGTCACCCTTACTAGATAT+TGG | 0.416517 | tig0020787:+72447 | Msa1386160:CDS |
| GGTATCAACATTGTCTCTTA+AGG | 0.417783 | tig0020787:-71251 | None:intergenic |
| CGTGTAAGCTCTTGACCAAT+TGG | 0.419230 | tig0020787:-69700 | None:intergenic |
| TAGGGGTAGAGTTAAACATT+TGG | 0.422128 | tig0020787:+74444 | Msa1386160:three_prime_UTR |
| CGCCTGTCAATTCTGAGAAC+CGG | 0.428266 | tig0020787:+69674 | Msa1386160:CDS |
| TGCTGGTATCACAAAGTCAA+TGG | 0.432173 | tig0020787:+71144 | Msa1386160:CDS |
| ACCTTCTTCAAGTAAGCTAC+TGG | 0.435272 | tig0020787:+74646 | Msa1386160:three_prime_UTR |
| AACTGGCACTGGTGCAGCTC+CGG | 0.436776 | tig0020787:+71117 | Msa1386160:CDS |
| GAGTTTCGATACTGTAAGAA+TGG | 0.438083 | tig0020787:+69144 | Msa1386160:CDS |
| GCCGTCCTTCAAACGAGAAA+GGG | 0.446918 | tig0020787:-71195 | None:intergenic |
| TTGTTTCAAGTGAAGTCGAC+AGG | 0.449273 | tig0020787:+69331 | Msa1386160:CDS |
| CAAACTACCATCAGTGAAAG+TGG | 0.455244 | tig0020787:-74307 | None:intergenic |
| CAAGAGCTTACACGAGGTCT+TGG | 0.455364 | tig0020787:+69709 | Msa1386160:CDS |
| ATGGGTGGAGGAACTGGCAC+TGG | 0.457183 | tig0020787:+71106 | Msa1386160:CDS |
| CAACTCTACGCGTCCGAGAA+AGG | 0.457651 | tig0020787:+69462 | Msa1386160:CDS |
| TCTTGGTGCTGGTGGTAATC+CGG | 0.460691 | tig0020787:+69726 | Msa1386160:CDS |
| ATGGATTGAAGATGATGTAC+TGG | 0.463580 | tig0020787:-68814 | None:intergenic |
| CCACCGGACATATCCTTTCT+CGG | 0.465397 | tig0020787:-69475 | None:intergenic |
| TGGTAGTTTGGTTGAGATCC+CGG | 0.466070 | tig0020787:+74320 | Msa1386160:CDS |
| TCTGAGAACCGGTTGCCAAT+TGG | 0.466227 | tig0020787:+69685 | Msa1386160:CDS |
| GGAATTGTATGGAACATAAC+TGG | 0.468139 | tig0020787:+72486 | Msa1386160:CDS |
| GGGTCTTTGCTATGATGATA+AGG | 0.472830 | tig0020787:-69379 | None:intergenic |
| AGATCCATCACTTAGTGGTC+AGG | 0.473550 | tig0020787:+73396 | Msa1386160:CDS |
| CGCCGTCCTTCAAACGAGAA+AGG | 0.476604 | tig0020787:-71196 | None:intergenic |
| TCTCGTTTGAAGGACGGCGG+AGG | 0.481078 | tig0020787:+71200 | Msa1386160:CDS |
| TCCAAATATTAAATTAGCAG+TGG | 0.484386 | tig0020787:-73365 | None:intergenic |
| GCTCTTGACCAATTGGCAAC+CGG | 0.487109 | tig0020787:-69693 | None:intergenic |
| GTAATAGATCCATCACTTAG+TGG | 0.487207 | tig0020787:+73391 | Msa1386160:CDS |
| TTATTGGTGTGGGTGGTGGT+GGG | 0.491634 | tig0020787:+69563 | Msa1386160:CDS |
| TCATCTTCAATCCATTCCTC+AGG | 0.492702 | tig0020787:+68822 | Msa1386160:five_prime_UTR |
| GATTGAATGCTTCAGTTACA+GGG | 0.493075 | tig0020787:-71324 | None:intergenic |
| ATGGGGATAGGAACTGCAAC+TGG | 0.495317 | tig0020787:+71852 | Msa1386160:CDS |
| CCCCTTTCTCGTTTGAAGGA+CGG | 0.496549 | tig0020787:+71194 | Msa1386160:CDS |
| CCTCTAAGCATCGAAATCTC+AGG | 0.496744 | tig0020787:-69418 | None:intergenic |
| AGCATAACATTGATTGCTAC+GGG | 0.497378 | tig0020787:+74124 | Msa1386160:CDS |
| TTTGTGATACCAGCAATAAC+CGG | 0.498131 | tig0020787:-71136 | None:intergenic |
| CTTAGAGGTGAAGGAAGTAG+TGG | 0.499966 | tig0020787:+69433 | Msa1386160:CDS |
| CAATATCTAGTAAGGGTGAC+TGG | 0.502388 | tig0020787:-72446 | None:intergenic |
| CCGGAATTCTTAAAGAAGAA+AGG | 0.504581 | tig0020787:+74339 | Msa1386160:CDS |
| AAGTGATCTGACCTTGTTTG+AGG | 0.505103 | tig0020787:+72512 | Msa1386160:CDS |
| GCAGCATTCATACCAATCTC+CGG | 0.506208 | tig0020787:-69745 | None:intergenic |
| GCTGAATTTCTGGAATTCGC+AGG | 0.506414 | tig0020787:-69181 | None:intergenic |
| AGAGGGCCACTGGAATTGTA+TGG | 0.506651 | tig0020787:+72475 | Msa1386160:CDS |
| CTCGTTTGAAGGACGGCGGA+GGG | 0.507764 | tig0020787:+71201 | Msa1386160:CDS |
| TGTAACTGAAGCATTCAATC+TGG | 0.508474 | tig0020787:+71327 | Msa1386160:CDS |
| ATCTCCTTGTGTGAGTTGAC+TGG | 0.510362 | tig0020787:-74262 | None:intergenic |
| TTGTAGGCTGGAATGGGTGG+AGG | 0.510444 | tig0020787:+71094 | Msa1386160:intron |
| ACCAGTAGCTTACTTGAAGA+AGG | 0.511076 | tig0020787:-74647 | None:intergenic |
| CGATCTTCCACTTTCACTGA+TGG | 0.512204 | tig0020787:+74300 | Msa1386160:CDS |
| CCAAATATTAAATTAGCAGT+GGG | 0.513309 | tig0020787:-73364 | None:intergenic |
| AGTGAGTGAGTGAAGGAAAA+CGG | 0.514283 | tig0020787:-68767 | None:intergenic |
| AAAGATTAAGGTTATTGGTG+TGG | 0.515818 | tig0020787:+69552 | Msa1386160:CDS |
| TGGTGGAACCAAAGAAAATG+AGG | 0.520580 | tig0020787:-68737 | None:intergenic |
| GGTTCTTCACTTATGGGGAT+AGG | 0.522575 | tig0020787:+71840 | Msa1386160:CDS |
| GCGAATTCCAGAAATTCAGC+AGG | 0.523863 | tig0020787:+69184 | Msa1386160:CDS |
| TCCGGTGGAGATGTGGTCGA+AGG | 0.524405 | tig0020787:+69490 | Msa1386160:CDS |
| TGAAGGAAAACGGTGATAGA+TGG | 0.525094 | tig0020787:-68757 | None:intergenic |
| TACAGAGAAAATACCAGTAA+TGG | 0.525695 | tig0020787:+74598 | Msa1386160:three_prime_UTR |
| AAGATTAAGGTTATTGGTGT+GGG | 0.526325 | tig0020787:+69553 | Msa1386160:CDS |
| ATTTCGATGCTTAGAGGTGA+AGG | 0.527070 | tig0020787:+69424 | Msa1386160:CDS |
| GCTGGTATCACAAAGTCAAT+GGG | 0.528789 | tig0020787:+71145 | Msa1386160:CDS |
| TGGAGATGTGGTCGAAGGGT+TGG | 0.537479 | tig0020787:+69495 | Msa1386160:CDS |
| ACAAGGAATTAAAGAAGTTG+GGG | 0.540607 | tig0020787:-74397 | None:intergenic |
| AAGTGAAGCGAGACCCGTAC+AGG | 0.541037 | tig0020787:+74165 | Msa1386160:CDS |
| GTTATTTAAATGCAGATACC+CGG | 0.548808 | tig0020787:+71768 | Msa1386160:intron |
| ATTGGTATAGAGAGGGCCAC+TGG | 0.549167 | tig0020787:+72465 | Msa1386160:CDS |
| ATTCTGCGACAAGGTGTTCG+TGG | 0.550129 | tig0020787:+71358 | Msa1386160:CDS |
| TTTGCTTCATTATAATTACT+CGG | 0.555041 | tig0020787:-69532 | None:intergenic |
| CTTAGCTTTCATGGACAACA+AGG | 0.555893 | tig0020787:-74510 | None:intergenic |
| AAAATGAGAAATTCAAAGTG+TGG | 0.559812 | tig0020787:-69090 | None:intergenic |
| GGAAGAAAGAACCTGAGGAA+TGG | 0.563392 | tig0020787:-68833 | None:intergenic |
| AACCGGTTCTCAGAATTGAC+AGG | 0.563659 | tig0020787:-69676 | None:intergenic |
| CTTACCTGACCACTAAGTGA+TGG | 0.565428 | tig0020787:-73400 | None:intergenic |
| GTCATTTGGAATAACTATCA+GGG | 0.565686 | tig0020787:-71272 | None:intergenic |
| CGTCCGAGAAAGGATATGTC+CGG | 0.566891 | tig0020787:+69472 | Msa1386160:CDS |
| AATTAGCAGTGGGGTCTACA+AGG | 0.567960 | tig0020787:-73354 | None:intergenic |
| CATTTCGTTATCAAGAACAA+TGG | 0.570737 | tig0020787:+68680 | Msa1386160:five_prime_UTR |
| AAAGTGTGGAAGATGCAATT+GGG | 0.571201 | tig0020787:-69076 | None:intergenic |
| CCCTTCGACCACATCTCCAC+CGG | 0.573793 | tig0020787:-69491 | None:intergenic |
| GGGTTAAGACATACCTGTAC+GGG | 0.573796 | tig0020787:-74178 | None:intergenic |
| CTTACACGAGGTCTTGGTGC+TGG | 0.574946 | tig0020787:+69715 | Msa1386160:CDS |
| GGAAGATCGCCGACTGACAA+CGG | 0.574950 | tig0020787:-74286 | None:intergenic |
| GGATATGTCCGGTGGAGATG+TGG | 0.576767 | tig0020787:+69483 | Msa1386160:CDS |
| GCTGGTGGTAATCCGGAGAT+TGG | 0.577631 | tig0020787:+69733 | Msa1386160:CDS |
| TACTAGATATTGGTATAGAG+AGG | 0.578242 | tig0020787:+72457 | Msa1386160:CDS |
| GAGCATAACATTGATTGCTA+CGG | 0.579728 | tig0020787:+74123 | Msa1386160:CDS |
| TACCCCTAATATTGATGCAG+TGG | 0.580979 | tig0020787:-74429 | None:intergenic |
| TTAAATGCAGATACCCGGGT+TGG | 0.583340 | tig0020787:+71773 | Msa1386160:intron |
| AGAGCTATAATGGCTAATGC+AGG | 0.588135 | tig0020787:+71819 | Msa1386160:CDS |
| GTCGTATATAACTTCTGCTG+CGG | 0.589202 | tig0020787:-73332 | None:intergenic |
| ACACGAGGTCTTGGTGCTGG+TGG | 0.589485 | tig0020787:+69718 | Msa1386160:CDS |
| ATGCAGGTTCTTCACTTATG+GGG | 0.590064 | tig0020787:+71835 | Msa1386160:CDS |
| ATTAAGGTTATTGGTGTGGG+TGG | 0.596357 | tig0020787:+69556 | Msa1386160:CDS |
| AGCCATTATAGCTCTAACAT+CGG | 0.596517 | tig0020787:-71811 | None:intergenic |
| GGGGTTAAGACATACCTGTA+CGG | 0.601158 | tig0020787:-74179 | None:intergenic |
| AAGTAAAGAGTCAATACAAG+AGG | 0.601747 | tig0020787:+69774 | Msa1386160:CDS |
| TTACCAAATTCGCACAGTGT+TGG | 0.602529 | tig0020787:+69355 | Msa1386160:CDS |
| TCAATGGGTATACTAACTGT+TGG | 0.603720 | tig0020787:+71160 | Msa1386160:CDS |
| TCTATACCAATATCTAGTAA+GGG | 0.604464 | tig0020787:-72453 | None:intergenic |
| TCGAGTGAGTGAGTGAGTGA+AGG | 0.608469 | tig0020787:-68774 | None:intergenic |
| GGTGTTAACAACAGAAAGTG+TGG | 0.611534 | tig0020787:+69307 | Msa1386160:CDS |
| CCACCAAAATTTCATACTCG+AGG | 0.614376 | tig0020787:-74703 | None:intergenic |
| GAAAATACCAGTAATGGTCA+GGG | 0.617023 | tig0020787:+74604 | Msa1386160:three_prime_UTR |
| TAAAGAGTCAATACAAGAGG+CGG | 0.618334 | tig0020787:+69777 | Msa1386160:CDS |
| AGGGCAGTTCAAGCACAAGA+AGG | 0.618926 | tig0020787:+71220 | Msa1386160:CDS |
| ACTAGATATTGGTATAGAGA+GGG | 0.622162 | tig0020787:+72458 | Msa1386160:CDS |
| AAAGTCGACATTCACCAACC+CGG | 0.625860 | tig0020787:-71787 | None:intergenic |
| ATGATTGAGAGTTCGATGAA+TGG | 0.627081 | tig0020787:+69604 | Msa1386160:CDS |
| TGCAGTGGTAAAGAAATACA+AGG | 0.629824 | tig0020787:-74414 | None:intergenic |
| CTTTCTCGTTTGAAGGACGG+CGG | 0.630792 | tig0020787:+71197 | Msa1386160:CDS |
| TTATTTAAATGCAGATACCC+GGG | 0.634762 | tig0020787:+71769 | Msa1386160:intron |
| CCGGTGGAGATGTGGTCGAA+GGG | 0.635066 | tig0020787:+69491 | Msa1386160:CDS |
| CCGTCCTTCAAACGAGAAAG+GGG | 0.635157 | tig0020787:-71194 | None:intergenic |
| TACCACTGCATCAATATTAG+GGG | 0.635255 | tig0020787:+74427 | Msa1386160:three_prime_UTR |
| TTGTATTGAAGGGAAAACGA+GGG | 0.636472 | tig0020787:+72398 | Msa1386160:intron |
| AAGTCGACATTCACCAACCC+GGG | 0.639911 | tig0020787:-71786 | None:intergenic |
| CGAATTCCAGAAATTCAGCA+GGG | 0.647094 | tig0020787:+69185 | Msa1386160:CDS |
| TACGGGATTCAAGCGTCAAG+AGG | 0.648241 | tig0020787:+74141 | Msa1386160:CDS |
| CCGAGAAAGGATATGTCCGG+TGG | 0.651747 | tig0020787:+69475 | Msa1386160:CDS |
| TATGTTCCATACAATTCCAG+TGG | 0.652303 | tig0020787:-72481 | None:intergenic |
| GGTGGAACCAAAGAAAATGA+GGG | 0.652627 | tig0020787:-68736 | None:intergenic |
| TGTTTCAAGTGAAGTCGACA+GGG | 0.654076 | tig0020787:+69332 | Msa1386160:CDS |
| CAGGCCAGTCAACTCACACA+AGG | 0.654525 | tig0020787:+74258 | Msa1386160:intron |
| TGAGAGTTCGATGAATGGTG+TGG | 0.654606 | tig0020787:+69609 | Msa1386160:CDS |
| AGGAAAACGGTGATAGATGG+TGG | 0.657617 | tig0020787:-68754 | None:intergenic |
| TGGATTGAAGATGATGTACT+GGG | 0.659277 | tig0020787:-68813 | None:intergenic |
| GGGGTGCTTGCTGTTAATGG+AGG | 0.662779 | tig0020787:+69205 | Msa1386160:CDS |
| ATTGAATGCTTCAGTTACAG+GGG | 0.680898 | tig0020787:-71323 | None:intergenic |
| TTTGTATTGAAGGGAAAACG+AGG | 0.683065 | tig0020787:+72397 | Msa1386160:intron |
| AAGGAGATACCGTTGTCAGT+CGG | 0.686727 | tig0020787:+74277 | Msa1386160:CDS |
| GTAGCTAACTACCTCAAACA+AGG | 0.689337 | tig0020787:-72523 | None:intergenic |
| CAAGGAATTAAAGAAGTTGG+GGG | 0.689607 | tig0020787:-74396 | None:intergenic |
| GAATTCCAGAAATTCAGCAG+GGG | 0.694289 | tig0020787:+69186 | Msa1386160:CDS |
| CAAATATTAAATTAGCAGTG+GGG | 0.711632 | tig0020787:-73363 | None:intergenic |
| ATTGTATGGAACATAACTGG+TGG | 0.718370 | tig0020787:+72489 | Msa1386160:CDS |
| GCTGATGATATTCTGCGACA+AGG | 0.719167 | tig0020787:+71349 | Msa1386160:CDS |
| ATTGGTCAAGAGCTTACACG+AGG | 0.768210 | tig0020787:+69703 | Msa1386160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTGAGATATTATTTA+GGG | - | tig0020787:69018-69037 | None:intergenic | 10.0% |
| !! | TAATAATTGAGATATTATTT+AGG | - | tig0020787:69019-69038 | None:intergenic | 10.0% |
| !!! | TTATTATTATTTTCATTAAC+AGG | + | tig0020787:69042-69061 | Msa1386160:intron | 10.0% |
| !! | AAAATTAATGAAAATAAGTT+TGG | + | tig0020787:69277-69296 | Msa1386160:CDS | 10.0% |
| !!! | ATTTTTAAATTAGTTTTATG+TGG | + | tig0020787:70892-70911 | Msa1386160:intron | 10.0% |
| !! | ATTTAAATAACATAATTAAC+AGG | - | tig0020787:71759-71778 | None:intergenic | 10.0% |
| !! | TAAATTAACATATATCTAAT+AGG | + | tig0020787:72776-72795 | Msa1386160:intron | 10.0% |
| !! | AAATTAACATATATCTAATA+GGG | + | tig0020787:72777-72796 | Msa1386160:intron | 10.0% |
| !! | AAATAACTAGAATATTTATA+TGG | - | tig0020787:72860-72879 | None:intergenic | 10.0% |
| !!! | TAAATATTCTAGTTATTTTT+AGG | + | tig0020787:72862-72881 | Msa1386160:intron | 10.0% |
| !! | AAACTAATTTAAAAATGCAT+AGG | - | tig0020787:70888-70907 | None:intergenic | 15.0% |
| !!! | AAATCAAAACTTATTTTTGT+AGG | + | tig0020787:71078-71097 | Msa1386160:intron | 15.0% |
| !! | TTAGTTAATACAAAAACTAA+TGG | - | tig0020787:71616-71635 | None:intergenic | 15.0% |
| !! | ATCCAAAAAAAACAATTTAA+AGG | + | tig0020787:72137-72156 | Msa1386160:intron | 15.0% |
| !!! | AACCTTTAAATTGTTTTTTT+TGG | - | tig0020787:72142-72161 | None:intergenic | 15.0% |
| !! | AATTAACATATATCTAATAG+GGG | + | tig0020787:72778-72797 | Msa1386160:intron | 15.0% |
| !!! | GGTTAACATTTAAAATTATT+GGG | - | tig0020787:72903-72922 | None:intergenic | 15.0% |
| !!! | TGGTTAACATTTAAAATTAT+TGG | - | tig0020787:72904-72923 | None:intergenic | 15.0% |
| !!! | CAGTTAAAAAAAAAAACTTT+TGG | - | tig0020787:72924-72943 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTTTTCAATTACT+TGG | + | tig0020787:73015-73034 | Msa1386160:intron | 15.0% |
| !! | ATAAAATTGTGTACTAAAAA+AGG | + | tig0020787:73920-73939 | Msa1386160:intron | 15.0% |
| !! | TAAAATTGTGTACTAAAAAA+GGG | + | tig0020787:73921-73940 | Msa1386160:intron | 15.0% |
| !! | ATTAAAGCGAATTAATTGTA+GGG | - | tig0020787:68956-68975 | None:intergenic | 20.0% |
| !! | TAATTAAGTAACTAACTAAC+TGG | - | tig0020787:68984-69003 | None:intergenic | 20.0% |
| !!! | TGAAAATAAGTTTGGATTTT+CGG | + | tig0020787:69285-69304 | Msa1386160:CDS | 20.0% |
| !! | TTTGCTTCATTATAATTACT+CGG | - | tig0020787:69535-69554 | None:intergenic | 20.0% |
| !! | TTATAATGAAGCAAAGATTA+AGG | + | tig0020787:69540-69559 | Msa1386160:CDS | 20.0% |
| !!! | CTACATTACAGTTTTATATT+TGG | + | tig0020787:69864-69883 | Msa1386160:intron | 20.0% |
| !! | TTAAATAATACTAGACTGTT+GGG | + | tig0020787:70302-70321 | Msa1386160:intron | 20.0% |
| !! | TTTATTTAAGTGAAGAAGTT+TGG | - | tig0020787:70419-70438 | None:intergenic | 20.0% |
| !!! | TTCTTCTTCTAAAATTCAAA+AGG | - | tig0020787:70922-70941 | None:intergenic | 20.0% |
| !! | AGGTTTCAGAAATATTATTT+GGG | - | tig0020787:71939-71958 | None:intergenic | 20.0% |
| !! | TAGGTTTCAGAAATATTATT+TGG | - | tig0020787:71940-71959 | None:intergenic | 20.0% |
| !! | GTGATACTCAAATTATATAT+AGG | + | tig0020787:71993-72012 | Msa1386160:intron | 20.0% |
| !! | AACAAATGATAAATCTGTAA+GGG | - | tig0020787:72557-72576 | None:intergenic | 20.0% |
| !! | TAACAAATGATAAATCTGTA+AGG | - | tig0020787:72558-72577 | None:intergenic | 20.0% |
| !! | AATAAACTTGTGAAACAAAA+AGG | - | tig0020787:72633-72652 | None:intergenic | 20.0% |
| !! | TTCAAAATTTAGATCATCTA+AGG | + | tig0020787:72666-72685 | Msa1386160:intron | 20.0% |
| !!! | GTTTTTTTTTTTAACTGACT+TGG | + | tig0020787:72927-72946 | Msa1386160:intron | 20.0% |
| !! | TTCATACAAATAACATTAGA+GGG | - | tig0020787:73440-73459 | None:intergenic | 20.0% |
| !! | TTTCATACAAATAACATTAG+AGG | - | tig0020787:73441-73460 | None:intergenic | 20.0% |
| !!! | ATATTTTTCCTGAAATGAAT+TGG | + | tig0020787:73491-73510 | Msa1386160:intron | 20.0% |
| !!! | TATTTTTCCTGAAATGAATT+GGG | + | tig0020787:73492-73511 | Msa1386160:intron | 20.0% |
| !!! | AATTTAGAACTTTTGTATCT+AGG | - | tig0020787:73571-73590 | None:intergenic | 20.0% |
| !!! | AAAGTTCTAAATTCTTTAAC+CGG | + | tig0020787:73578-73597 | Msa1386160:intron | 20.0% |
| !!! | ATGTATGTGTTATTTAAGTA+GGG | + | tig0020787:73828-73847 | Msa1386160:intron | 20.0% |
| ! | GATTAAAGCGAATTAATTGT+AGG | - | tig0020787:68957-68976 | None:intergenic | 25.0% |
| ! | AAAATGAGAAATTCAAAGTG+TGG | - | tig0020787:69093-69112 | None:intergenic | 25.0% |
| !! | GAAAATAAGTTTGGATTTTC+GGG | + | tig0020787:69286-69305 | Msa1386160:CDS | 25.0% |
| ! | ATATAAATCATGTCTACACA+TGG | - | tig0020787:69914-69933 | None:intergenic | 25.0% |
| ! | AGAATAGAGTAATACATGAT+TGG | + | tig0020787:69987-70006 | Msa1386160:intron | 25.0% |
| ! | CTTAAATAATACTAGACTGT+TGG | + | tig0020787:70301-70320 | Msa1386160:intron | 25.0% |
| ! | ACAAACGTATCATTAATATC+AGG | + | tig0020787:70381-70400 | Msa1386160:intron | 25.0% |
| ! | TCACTTAAATAAAATCAACC+CGG | + | tig0020787:70426-70445 | Msa1386160:intron | 25.0% |
| !! | CGAAGTTGTTGTATATTTTA+AGG | - | tig0020787:70509-70528 | None:intergenic | 25.0% |
| !! | GAAGCTCATTTTATGTTAAA+AGG | + | tig0020787:70623-70642 | Msa1386160:intron | 25.0% |
| !! | TAATTTAAAGTGACATCCTA+GGG | - | tig0020787:70757-70776 | None:intergenic | 25.0% |
| !! | ATAATTTAAAGTGACATCCT+AGG | - | tig0020787:70758-70777 | None:intergenic | 25.0% |
| !!! | TATGTGGATTTTTCAGAATT+GGG | + | tig0020787:70998-71017 | Msa1386160:intron | 25.0% |
| ! | TGGCATTTCTGATATTATTA+CGG | + | tig0020787:71378-71397 | Msa1386160:CDS | 25.0% |
| ! | TTTCTGATATTATTACGGTA+TGG | + | tig0020787:71383-71402 | Msa1386160:intron | 25.0% |
| ! | AACTAAACAAAGCAACAAAA+GGG | - | tig0020787:71443-71462 | None:intergenic | 25.0% |
| ! | AAACTAAACAAAGCAACAAA+AGG | - | tig0020787:71444-71463 | None:intergenic | 25.0% |
| ! | TCTGATTGTATAGTAGTAAA+AGG | + | tig0020787:71477-71496 | Msa1386160:intron | 25.0% |
| ! | AACGAATAAAGACACAATTA+TGG | - | tig0020787:71518-71537 | None:intergenic | 25.0% |
| !!! | TTTATTCGTTTTGACATATC+CGG | + | tig0020787:71528-71547 | Msa1386160:intron | 25.0% |
| !!! | TTTTTTATCAGTTCTAGATG+CGG | + | tig0020787:71646-71665 | Msa1386160:intron | 25.0% |
| ! | TGATACGCTAATATAACATT+TGG | - | tig0020787:72023-72042 | None:intergenic | 25.0% |
| ! | TGTTATATTAGCGTATCATA+TGG | + | tig0020787:72025-72044 | Msa1386160:intron | 25.0% |
| ! | AACTGATGAGCATATTATTA+TGG | + | tig0020787:72325-72344 | Msa1386160:intron | 25.0% |
| ! | TTCAATTATACATGTAACCA+TGG | - | tig0020787:72352-72371 | None:intergenic | 25.0% |
| !! | TAGCTTCTTTTTGTATTGAA+GGG | + | tig0020787:72388-72407 | Msa1386160:intron | 25.0% |
| ! | TCTATACCAATATCTAGTAA+GGG | - | tig0020787:72456-72475 | None:intergenic | 25.0% |
| !! | CTAAATTTTGAATCAACAGA+GGG | - | tig0020787:72658-72677 | None:intergenic | 25.0% |
| !! | TCTAAATTTTGAATCAACAG+AGG | - | tig0020787:72659-72678 | None:intergenic | 25.0% |
| ! | GATAACACTACTATATTAAC+TGG | - | tig0020787:73102-73121 | None:intergenic | 25.0% |
| !!! | TATAAACTTGAGTTTTGAAG+TGG | + | tig0020787:73143-73162 | Msa1386160:intron | 25.0% |
| ! | ATATTTCTTTGTTCACAGTA+GGG | - | tig0020787:73196-73215 | None:intergenic | 25.0% |
| ! | TATATTTCTTTGTTCACAGT+AGG | - | tig0020787:73197-73216 | None:intergenic | 25.0% |
| ! | CATTTACCTGTACATTATAA+AGG | - | tig0020787:73312-73331 | None:intergenic | 25.0% |
| ! | CAAATATTAAATTAGCAGTG+GGG | - | tig0020787:73366-73385 | None:intergenic | 25.0% |
| ! | CCAAATATTAAATTAGCAGT+GGG | - | tig0020787:73367-73386 | None:intergenic | 25.0% |
| ! | TCCAAATATTAAATTAGCAG+TGG | - | tig0020787:73368-73387 | None:intergenic | 25.0% |
| !!! | AAGTTCTAAATTCTTTAACC+GGG | + | tig0020787:73579-73598 | Msa1386160:intron | 25.0% |
| ! | CAATATTTCCGAACAAAAAA+TGG | - | tig0020787:73692-73711 | None:intergenic | 25.0% |
| !! | AAATGTTTTGTACAGAATAG+AGG | + | tig0020787:73803-73822 | Msa1386160:intron | 25.0% |
| !!! | CATGTATGTGTTATTTAAGT+AGG | + | tig0020787:73827-73846 | Msa1386160:intron | 25.0% |
| ! | GAACATTGTTAAACTCATTA+TGG | - | tig0020787:73880-73899 | None:intergenic | 25.0% |
| !!! | CTTTGAGTTAACTTTTTTCA+TGG | - | tig0020787:74032-74051 | None:intergenic | 25.0% |
| ! | TTGACAAAAACCACAATTAT+GGG | - | tig0020787:74233-74252 | None:intergenic | 25.0% |
| ! | TTTGACAAAAACCACAATTA+TGG | - | tig0020787:74234-74253 | None:intergenic | 25.0% |
| ! | TACAAGGAATTAAAGAAGTT+GGG | - | tig0020787:74401-74420 | None:intergenic | 25.0% |
| ! | ATACAAGGAATTAAAGAAGT+TGG | - | tig0020787:74402-74421 | None:intergenic | 25.0% |
| CATTTCGTTATCAAGAACAA+TGG | + | tig0020787:68680-68699 | Msa1386160:five_prime_UTR | 30.0% | |
| ! | AACAAAACCCTCATTTTCTT+TGG | + | tig0020787:68729-68748 | Msa1386160:five_prime_UTR | 30.0% |
| GAAGCAAAGATTAAGGTTAT+TGG | + | tig0020787:69547-69566 | Msa1386160:CDS | 30.0% | |
| AAAGATTAAGGTTATTGGTG+TGG | + | tig0020787:69552-69571 | Msa1386160:CDS | 30.0% | |
| AAGATTAAGGTTATTGGTGT+GGG | + | tig0020787:69553-69572 | Msa1386160:CDS | 30.0% | |
| GATTGTTAATACTGATGTTC+AGG | + | tig0020787:69639-69658 | Msa1386160:CDS | 30.0% | |
| AAGTAAAGAGTCAATACAAG+AGG | + | tig0020787:69774-69793 | Msa1386160:CDS | 30.0% | |
| TAGAGTAATACATGATTGGT+AGG | + | tig0020787:69991-70010 | Msa1386160:intron | 30.0% | |
| TAATACATGATTGGTAGGAA+AGG | + | tig0020787:69996-70015 | Msa1386160:intron | 30.0% | |
| CAATGCATGATAGAGTATAA+AGG | - | tig0020787:70160-70179 | None:intergenic | 30.0% | |
| CACTTAAATAAAATCAACCC+GGG | + | tig0020787:70427-70446 | Msa1386160:intron | 30.0% | |
| TTCGACAAATAAATGAGTGA+AGG | - | tig0020787:70657-70676 | None:intergenic | 30.0% | |
| TTTCGAAATATCATTTCCCT+AGG | + | tig0020787:70738-70757 | Msa1386160:intron | 30.0% | |
| TGCAATTTCAAATACTGTGA+TGG | + | tig0020787:70811-70830 | Msa1386160:intron | 30.0% | |
| !! | ATTTTAAGTCAATGCCTATG+TGG | + | tig0020787:70982-71001 | Msa1386160:intron | 30.0% |
| ! | CAATTCTGAAAAATCCACAT+AGG | - | tig0020787:70999-71018 | None:intergenic | 30.0% |
| !! | CTATGTGGATTTTTCAGAAT+TGG | + | tig0020787:70997-71016 | Msa1386160:intron | 30.0% |
| AATTCCAAATTGTTAGTCGT+TGG | + | tig0020787:71036-71055 | Msa1386160:intron | 30.0% | |
| TATACCAACGACTAACAATT+TGG | - | tig0020787:71043-71062 | None:intergenic | 30.0% | |
| !!! | CAAAACTTATTTTTGTAGGC+TGG | + | tig0020787:71082-71101 | Msa1386160:intron | 30.0% |
| !!! | TTATTTTTGTAGGCTGGAAT+GGG | + | tig0020787:71088-71107 | Msa1386160:intron | 30.0% |
| ! | GTCATTTGGAATAACTATCA+GGG | - | tig0020787:71275-71294 | None:intergenic | 30.0% |
| ! | TGTCATTTGGAATAACTATC+AGG | - | tig0020787:71276-71295 | None:intergenic | 30.0% |
| AAAAACTCAACAACCAAATG+TGG | - | tig0020787:71566-71585 | None:intergenic | 30.0% | |
| GTTATTTAAATGCAGATACC+CGG | + | tig0020787:71768-71787 | Msa1386160:intron | 30.0% | |
| TTATTTAAATGCAGATACCC+GGG | + | tig0020787:71769-71788 | Msa1386160:intron | 30.0% | |
| ! | CTAGCTTCTTTTTGTATTGA+AGG | + | tig0020787:72387-72406 | Msa1386160:intron | 30.0% |
| CTCTATACCAATATCTAGTA+AGG | - | tig0020787:72457-72476 | None:intergenic | 30.0% | |
| TACTAGATATTGGTATAGAG+AGG | + | tig0020787:72457-72476 | Msa1386160:CDS | 30.0% | |
| ACTAGATATTGGTATAGAGA+GGG | + | tig0020787:72458-72477 | Msa1386160:CDS | 30.0% | |
| AAACTTGTGAAACAAAAAGG+AGG | - | tig0020787:72630-72649 | None:intergenic | 30.0% | |
| TTTAGATCATCTAAGGATCA+TGG | + | tig0020787:72673-72692 | Msa1386160:intron | 30.0% | |
| TTAGATCATCTAAGGATCAT+GGG | + | tig0020787:72674-72693 | Msa1386160:intron | 30.0% | |
| TATAGTAATGATAGAACACC+AGG | - | tig0020787:72956-72975 | None:intergenic | 30.0% | |
| ! | TACTATATTAACTGGACTAG+AGG | - | tig0020787:73094-73113 | None:intergenic | 30.0% |
| CAAGTTTATAAATAGCTCAC+AGG | - | tig0020787:73133-73152 | None:intergenic | 30.0% | |
| TCATACTCTTGTATCTAAGA+TGG | + | tig0020787:73285-73304 | Msa1386160:intron | 30.0% | |
| CCCACTGCTAATTTAATATT+TGG | + | tig0020787:73364-73383 | Msa1386160:CDS | 30.0% | |
| !!! | ACTGAACACCATTTTTTGTT+CGG | + | tig0020787:73681-73700 | Msa1386160:intron | 30.0% |
| TCTATTGTTACGGAATAGAA+GGG | + | tig0020787:73755-73774 | Msa1386160:intron | 30.0% | |
| GTTAAACTCATTATGGAACA+TGG | - | tig0020787:73873-73892 | None:intergenic | 30.0% | |
| TACATGAAACCTACCATATA+TGG | - | tig0020787:73956-73975 | None:intergenic | 30.0% | |
| CTATATGAAACCAAATGACA+TGG | - | tig0020787:74101-74120 | None:intergenic | 30.0% | |
| ! | CATGTCATTTGGTTTCATAT+AGG | + | tig0020787:74099-74118 | Msa1386160:intron | 30.0% |
| ! | CTTTCTTCTTTAAGAATTCC+GGG | - | tig0020787:74341-74360 | None:intergenic | 30.0% |
| ! | CCTTTCTTCTTTAAGAATTC+CGG | - | tig0020787:74342-74361 | None:intergenic | 30.0% |
| ACAAGGAATTAAAGAAGTTG+GGG | - | tig0020787:74400-74419 | None:intergenic | 30.0% | |
| TTTACCACTGCATCAATATT+AGG | + | tig0020787:74425-74444 | Msa1386160:three_prime_UTR | 30.0% | |
| TTACCACTGCATCAATATTA+GGG | + | tig0020787:74426-74445 | Msa1386160:three_prime_UTR | 30.0% | |
| ATTGCTATAAAGGGCAAAAA+CGG | - | tig0020787:74483-74502 | None:intergenic | 30.0% | |
| ! | TTGCCCTTTATAGCAATTTT+AGG | + | tig0020787:74486-74505 | Msa1386160:three_prime_UTR | 30.0% |
| GGACCTAAAATTGCTATAAA+GGG | - | tig0020787:74492-74511 | None:intergenic | 30.0% | |
| AGGACCTAAAATTGCTATAA+AGG | - | tig0020787:74493-74512 | None:intergenic | 30.0% | |
| TACAGAGAAAATACCAGTAA+TGG | + | tig0020787:74598-74617 | Msa1386160:three_prime_UTR | 30.0% | |
| !!! | ATGAGGGTTTTGTTACTTCA+CGG | - | tig0020787:68723-68742 | None:intergenic | 35.0% |
| TGGATTGAAGATGATGTACT+GGG | - | tig0020787:68816-68835 | None:intergenic | 35.0% | |
| ! | ATGGATTGAAGATGATGTAC+TGG | - | tig0020787:68817-68836 | None:intergenic | 35.0% |
| AAAGTGTGGAAGATGCAATT+GGG | - | tig0020787:69079-69098 | None:intergenic | 35.0% | |
| GAGTTTCGATACTGTAAGAA+TGG | + | tig0020787:69144-69163 | Msa1386160:CDS | 35.0% | |
| !!! | TCATAGCAAAGACCCTTTTT+TGG | + | tig0020787:69387-69406 | Msa1386160:CDS | 35.0% |
| CAGGATGAAGATCCAAAAAA+GGG | - | tig0020787:69402-69421 | None:intergenic | 35.0% | |
| TCAGGATGAAGATCCAAAAA+AGG | - | tig0020787:69403-69422 | None:intergenic | 35.0% | |
| ATGATTGAGAGTTCGATGAA+TGG | + | tig0020787:69604-69623 | Msa1386160:CDS | 35.0% | |
| TAAAGAGTCAATACAAGAGG+CGG | + | tig0020787:69777-69796 | Msa1386160:CDS | 35.0% | |
| TTGGTAGGAAAGGTAATCTA+TGG | + | tig0020787:70006-70025 | Msa1386160:intron | 35.0% | |
| CTTGAATACTACCATACCAA+AGG | - | tig0020787:70116-70135 | None:intergenic | 35.0% | |
| !!! | ACTGTTGGGTTTTTTGTTGA+GGG | + | tig0020787:70316-70335 | Msa1386160:intron | 35.0% |
| AAATGAGCTTCCAATTGAAG+TGG | - | tig0020787:70614-70633 | None:intergenic | 35.0% | |
| TTCAGAATTGGGAATAGACA+CGG | + | tig0020787:71009-71028 | Msa1386160:intron | 35.0% | |
| !!! | CTTATTTTTGTAGGCTGGAA+TGG | + | tig0020787:71087-71106 | Msa1386160:intron | 35.0% |
| TTTGTGATACCAGCAATAAC+CGG | - | tig0020787:71139-71158 | None:intergenic | 35.0% | |
| TCAATGGGTATACTAACTGT+TGG | + | tig0020787:71160-71179 | Msa1386160:CDS | 35.0% | |
| GGTATCAACATTGTCTCTTA+AGG | - | tig0020787:71254-71273 | None:intergenic | 35.0% | |
| ATTGAATGCTTCAGTTACAG+GGG | - | tig0020787:71326-71345 | None:intergenic | 35.0% | |
| GATTGAATGCTTCAGTTACA+GGG | - | tig0020787:71327-71346 | None:intergenic | 35.0% | |
| AGATTGAATGCTTCAGTTAC+AGG | - | tig0020787:71328-71347 | None:intergenic | 35.0% | |
| ! | TGTAACTGAAGCATTCAATC+TGG | + | tig0020787:71327-71346 | Msa1386160:CDS | 35.0% |
| TAAACAAAGCAACAAAAGGG+AGG | - | tig0020787:71440-71459 | None:intergenic | 35.0% | |
| !! | AGCCATTATAGCTCTAACAT+CGG | - | tig0020787:71814-71833 | None:intergenic | 35.0% |
| TAATGCAGGTTCTTCACTTA+TGG | + | tig0020787:71833-71852 | Msa1386160:CDS | 35.0% | |
| AATGCAGGTTCTTCACTTAT+GGG | + | tig0020787:71834-71853 | Msa1386160:CDS | 35.0% | |
| TATGCATGCAAACTGCTATT+GGG | + | tig0020787:71875-71894 | Msa1386160:intron | 35.0% | |
| TTTGGGTCAAATAGAAGATC+TGG | - | tig0020787:71922-71941 | None:intergenic | 35.0% | |
| GTATTATGTAAGCGAACTGT+AGG | - | tig0020787:71959-71978 | None:intergenic | 35.0% | |
| !!! | TACAGCCAAAGTTGTTTTAG+AGG | + | tig0020787:72074-72093 | Msa1386160:intron | 35.0% |
| !! | GCTATCCTCTAAAACAACTT+TGG | - | tig0020787:72082-72101 | None:intergenic | 35.0% |
| !!! | AAGTTGTTTTAGAGGATAGC+TGG | + | tig0020787:72082-72101 | Msa1386160:intron | 35.0% |
| CATGCACACTTCAAAATTCA+TGG | + | tig0020787:72183-72202 | Msa1386160:intron | 35.0% | |
| GAGCATATTATTATGGTCCA+TGG | + | tig0020787:72332-72351 | Msa1386160:intron | 35.0% | |
| TTTGTATTGAAGGGAAAACG+AGG | + | tig0020787:72397-72416 | Msa1386160:intron | 35.0% | |
| TTGTATTGAAGGGAAAACGA+GGG | + | tig0020787:72398-72417 | Msa1386160:intron | 35.0% | |
| TATGTTCCATACAATTCCAG+TGG | - | tig0020787:72484-72503 | None:intergenic | 35.0% | |
| GGAATTGTATGGAACATAAC+TGG | + | tig0020787:72486-72505 | Msa1386160:CDS | 35.0% | |
| ATTGTATGGAACATAACTGG+TGG | + | tig0020787:72489-72508 | Msa1386160:CDS | 35.0% | |
| ATAAATCTGTAAGGGTCAGA+GGG | - | tig0020787:72549-72568 | None:intergenic | 35.0% | |
| TAATTCGCATGCTGTTGTAA+GGG | - | tig0020787:72743-72762 | None:intergenic | 35.0% | |
| TTACTTGGAAACAAACACAC+TGG | + | tig0020787:73030-73049 | Msa1386160:intron | 35.0% | |
| !!! | AACTTGAGTTTTGAAGTGGA+TGG | + | tig0020787:73147-73166 | Msa1386160:intron | 35.0% |
| ! | TGGTTGTTTAAAGCTTGCTT+TGG | + | tig0020787:73167-73186 | Msa1386160:intron | 35.0% |
| GATGGTCCTTTATAATGTAC+AGG | + | tig0020787:73303-73322 | Msa1386160:intron | 35.0% | |
| GTAATAGATCCATCACTTAG+TGG | + | tig0020787:73391-73410 | Msa1386160:CDS | 35.0% | |
| AATGTTGCCCAATTCATTTC+AGG | - | tig0020787:73502-73521 | None:intergenic | 35.0% | |
| GCAGAAAATCTACTCTTTCT+TGG | - | tig0020787:73541-73560 | None:intergenic | 35.0% | |
| ! | TGTCAATGAAATCTAGCTTC+TGG | + | tig0020787:73627-73646 | Msa1386160:intron | 35.0% |
| ATTTAAACAAACCTGACGAG+AGG | - | tig0020787:73721-73740 | None:intergenic | 35.0% | |
| CTTCTATTCCGTAACAATAG+AGG | - | tig0020787:73756-73775 | None:intergenic | 35.0% | |
| CTCTATTGTTACGGAATAGA+AGG | + | tig0020787:73754-73773 | Msa1386160:intron | 35.0% | |
| !! | AACAATGTTCTCTAGAACGA+AGG | + | tig0020787:73890-73909 | Msa1386160:intron | 35.0% |
| AATGTGTGACCATATATGGT+AGG | + | tig0020787:73944-73963 | Msa1386160:intron | 35.0% | |
| ! | GAGCATAACATTGATTGCTA+CGG | + | tig0020787:74123-74142 | Msa1386160:CDS | 35.0% |
| ! | AGCATAACATTGATTGCTAC+GGG | + | tig0020787:74124-74143 | Msa1386160:CDS | 35.0% |
| TATGGGTATGACATCATAGA+GGG | - | tig0020787:74216-74235 | None:intergenic | 35.0% | |
| TTATGGGTATGACATCATAG+AGG | - | tig0020787:74217-74236 | None:intergenic | 35.0% | |
| TGATGTCATACCCATAATTG+TGG | + | tig0020787:74220-74239 | Msa1386160:intron | 35.0% | |
| ! | GTGGTTTTTGTCAAAAATGC+AGG | + | tig0020787:74239-74258 | Msa1386160:intron | 35.0% |
| CCGGAATTCTTAAAGAAGAA+AGG | + | tig0020787:74339-74358 | Msa1386160:CDS | 35.0% | |
| !! | GGAAAAGAGTATTAAGCTCT+TGG | - | tig0020787:74378-74397 | None:intergenic | 35.0% |
| CAAGGAATTAAAGAAGTTGG+GGG | - | tig0020787:74399-74418 | None:intergenic | 35.0% | |
| TGCAGTGGTAAAGAAATACA+AGG | - | tig0020787:74417-74436 | None:intergenic | 35.0% | |
| TACCACTGCATCAATATTAG+GGG | + | tig0020787:74427-74446 | Msa1386160:three_prime_UTR | 35.0% | |
| TAGGGGTAGAGTTAAACATT+TGG | + | tig0020787:74444-74463 | Msa1386160:three_prime_UTR | 35.0% | |
| TTGCTATAAAGGGCAAAAAC+GGG | - | tig0020787:74482-74501 | None:intergenic | 35.0% | |
| ! | TGGAAAGTTCTTAGCTTTCA+TGG | - | tig0020787:74522-74541 | None:intergenic | 35.0% |
| ! | TTCCAAACTTGTGTGTTTTG+AGG | + | tig0020787:74537-74556 | Msa1386160:three_prime_UTR | 35.0% |
| AGAAAATACCAGTAATGGTC+AGG | + | tig0020787:74603-74622 | Msa1386160:three_prime_UTR | 35.0% | |
| GAAAATACCAGTAATGGTCA+GGG | + | tig0020787:74604-74623 | Msa1386160:three_prime_UTR | 35.0% | |
| ! | CTTCCTCGAGTATGAAATTT+TGG | + | tig0020787:74700-74719 | Msa1386160:three_prime_UTR | 35.0% |
| GGTGGAACCAAAGAAAATGA+GGG | - | tig0020787:68739-68758 | None:intergenic | 40.0% | |
| TGGTGGAACCAAAGAAAATG+AGG | - | tig0020787:68740-68759 | None:intergenic | 40.0% | |
| TGAAGGAAAACGGTGATAGA+TGG | - | tig0020787:68760-68779 | None:intergenic | 40.0% | |
| AGTGAGTGAGTGAAGGAAAA+CGG | - | tig0020787:68770-68789 | None:intergenic | 40.0% | |
| TCATCTTCAATCCATTCCTC+AGG | + | tig0020787:68822-68841 | Msa1386160:five_prime_UTR | 40.0% | |
| GAAGCGTAATGAGAATTGAG+AGG | - | tig0020787:68857-68876 | None:intergenic | 40.0% | |
| CAAAGTGTGGAAGATGCAAT+TGG | - | tig0020787:69080-69099 | None:intergenic | 40.0% | |
| CGAATTCCAGAAATTCAGCA+GGG | + | tig0020787:69185-69204 | Msa1386160:CDS | 40.0% | |
| GAATTCCAGAAATTCAGCAG+GGG | + | tig0020787:69186-69205 | Msa1386160:CDS | 40.0% | |
| GGTGTTAACAACAGAAAGTG+TGG | + | tig0020787:69307-69326 | Msa1386160:CDS | 40.0% | |
| ! | TTGTTTCAAGTGAAGTCGAC+AGG | + | tig0020787:69331-69350 | Msa1386160:CDS | 40.0% |
| ! | TGTTTCAAGTGAAGTCGACA+GGG | + | tig0020787:69332-69351 | Msa1386160:CDS | 40.0% |
| TTACCAAATTCGCACAGTGT+TGG | + | tig0020787:69355-69374 | Msa1386160:CDS | 40.0% | |
| ! | GGGTCTTTGCTATGATGATA+AGG | - | tig0020787:69382-69401 | None:intergenic | 40.0% |
| ATTTCGATGCTTAGAGGTGA+AGG | + | tig0020787:69424-69443 | Msa1386160:CDS | 40.0% | |
| ATTAAGGTTATTGGTGTGGG+TGG | + | tig0020787:69556-69575 | Msa1386160:CDS | 40.0% | |
| TCAATACAAGAGGCGGTTTA+TGG | + | tig0020787:69784-69803 | Msa1386160:CDS | 40.0% | |
| CAACCACTTTCCTTCAAACA+TGG | + | tig0020787:69836-69855 | Msa1386160:intron | 40.0% | |
| TGTAGAACAGCCATGTTTGA+AGG | - | tig0020787:69849-69868 | None:intergenic | 40.0% | |
| ! | GTCTACACATGGTAATGTTC+AGG | - | tig0020787:69903-69922 | None:intergenic | 40.0% |
| GTAATCTATGGTGTAGTGTG+AGG | + | tig0020787:70018-70037 | Msa1386160:intron | 40.0% | |
| TAGGCCTCAATATTCCACAA+AGG | + | tig0020787:70046-70065 | Msa1386160:intron | 40.0% | |
| AGGCCTCAATATTCCACAAA+GGG | + | tig0020787:70047-70066 | Msa1386160:intron | 40.0% | |
| CAACCCTTTGTGGAATATTG+AGG | - | tig0020787:70053-70072 | None:intergenic | 40.0% | |
| TCCACAAAGGGTTGTCTATT+TGG | + | tig0020787:70059-70078 | Msa1386160:intron | 40.0% | |
| ! | TTTTCTGCATGCCTTTGGTA+TGG | + | tig0020787:70102-70121 | Msa1386160:intron | 40.0% |
| !!! | GACTGTTGGGTTTTTTGTTG+AGG | + | tig0020787:70315-70334 | Msa1386160:intron | 40.0% |
| !!! | CTGTTGGGTTTTTTGTTGAG+GGG | + | tig0020787:70317-70336 | Msa1386160:intron | 40.0% |
| !!! | TGTTGGGTTTTTTGTTGAGG+GGG | + | tig0020787:70318-70337 | Msa1386160:intron | 40.0% |
| TGTTGAGGGGGGTAATTAAT+AGG | + | tig0020787:70330-70349 | Msa1386160:intron | 40.0% | |
| GTTGAGGGGGGTAATTAATA+GGG | + | tig0020787:70331-70350 | Msa1386160:intron | 40.0% | |
| TTGAGGGGGGTAATTAATAG+GGG | + | tig0020787:70332-70351 | Msa1386160:intron | 40.0% | |
| TGCTGGTATCACAAAGTCAA+TGG | + | tig0020787:71144-71163 | Msa1386160:CDS | 40.0% | |
| GCTGGTATCACAAAGTCAAT+GGG | + | tig0020787:71145-71164 | Msa1386160:CDS | 40.0% | |
| GCAGTAAGCAACTTGTCATT+TGG | - | tig0020787:71289-71308 | None:intergenic | 40.0% | |
| TCAACAACCAAATGTGGATC+CGG | - | tig0020787:71560-71579 | None:intergenic | 40.0% | |
| !! | ACCTTAAGCTTTGAACCGTA+CGG | - | tig0020787:71714-71733 | None:intergenic | 40.0% |
| TGCCGATGTTAGAGCTATAA+TGG | + | tig0020787:71809-71828 | Msa1386160:CDS | 40.0% | |
| AGAGCTATAATGGCTAATGC+AGG | + | tig0020787:71819-71838 | Msa1386160:CDS | 40.0% | |
| ATGCAGGTTCTTCACTTATG+GGG | + | tig0020787:71835-71854 | Msa1386160:CDS | 40.0% | |
| GTATGCATGCAAACTGCTAT+TGG | + | tig0020787:71874-71893 | Msa1386160:intron | 40.0% | |
| ATGCATGCAAACTGCTATTG+GGG | + | tig0020787:71876-71895 | Msa1386160:intron | 40.0% | |
| CAAATAGAAGATCTGGACTC+AGG | - | tig0020787:71915-71934 | None:intergenic | 40.0% | |
| ! | CATCAGTTCTGACTAAGCAA+GGG | - | tig0020787:72313-72332 | None:intergenic | 40.0% |
| ! | TCATCAGTTCTGACTAAGCA+AGG | - | tig0020787:72314-72333 | None:intergenic | 40.0% |
| CAATATCTAGTAAGGGTGAC+TGG | - | tig0020787:72449-72468 | None:intergenic | 40.0% | |
| CAGTCACCCTTACTAGATAT+TGG | + | tig0020787:72447-72466 | Msa1386160:CDS | 40.0% | |
| ! | AAGTGATCTGACCTTGTTTG+AGG | + | tig0020787:72512-72531 | Msa1386160:CDS | 40.0% |
| GTAGCTAACTACCTCAAACA+AGG | - | tig0020787:72526-72545 | None:intergenic | 40.0% | |
| TAAATCTGTAAGGGTCAGAG+GGG | - | tig0020787:72548-72567 | None:intergenic | 40.0% | |
| GATAAATCTGTAAGGGTCAG+AGG | - | tig0020787:72550-72569 | None:intergenic | 40.0% | |
| AATTCGCATGCTGTTGTAAG+GGG | - | tig0020787:72742-72761 | None:intergenic | 40.0% | |
| GTAATTCGCATGCTGTTGTA+AGG | - | tig0020787:72744-72763 | None:intergenic | 40.0% | |
| !! | AGGGGCATTTCGAGAATTAT+AGG | + | tig0020787:72796-72815 | Msa1386160:intron | 40.0% |
| !!! | TTTTAACTGACTTGGTCTCC+TGG | + | tig0020787:72935-72954 | Msa1386160:intron | 40.0% |
| CTGGCTGAAAACGATATTAC+AGG | - | tig0020787:72981-73000 | None:intergenic | 40.0% | |
| AAAGAAAATACATCCCTGCC+TGG | - | tig0020787:73004-73023 | None:intergenic | 40.0% | |
| GTCGTATATAACTTCTGCTG+CGG | - | tig0020787:73335-73354 | None:intergenic | 40.0% | |
| ! | AATGAAATCTAGCTTCTGGC+TGG | + | tig0020787:73631-73650 | Msa1386160:intron | 40.0% |
| CGCAAACACCTCTATTGTTA+CGG | + | tig0020787:73745-73764 | Msa1386160:intron | 40.0% | |
| ! | AAGGGAAGTGTGTGTAATTG+AGG | + | tig0020787:73773-73792 | Msa1386160:intron | 40.0% |
| ! | AGGGAAGTGTGTGTAATTGA+GGG | + | tig0020787:73774-73793 | Msa1386160:intron | 40.0% |
| AGGGAATGTGTGACCATATA+TGG | + | tig0020787:73940-73959 | Msa1386160:intron | 40.0% | |
| CTGATGTGAACCATGTCATT+TGG | + | tig0020787:74088-74107 | Msa1386160:intron | 40.0% | |
| ATGGGTATGACATCATAGAG+GGG | - | tig0020787:74215-74234 | None:intergenic | 40.0% | |
| CAAACTACCATCAGTGAAAG+TGG | - | tig0020787:74310-74329 | None:intergenic | 40.0% | |
| CACTTTCACTGATGGTAGTT+TGG | + | tig0020787:74308-74327 | Msa1386160:CDS | 40.0% | |
| TACCCCTAATATTGATGCAG+TGG | - | tig0020787:74432-74451 | None:intergenic | 40.0% | |
| ! | CTTAGCTTTCATGGACAACA+AGG | - | tig0020787:74513-74532 | None:intergenic | 40.0% |
| AGCCTCAAAACACACAAGTT+TGG | - | tig0020787:74542-74561 | None:intergenic | 40.0% | |
| ACCTTCTTCAAGTAAGCTAC+TGG | + | tig0020787:74646-74665 | Msa1386160:three_prime_UTR | 40.0% | |
| ACCAGTAGCTTACTTGAAGA+AGG | - | tig0020787:74650-74669 | None:intergenic | 40.0% | |
| CCACCAAAATTTCATACTCG+AGG | - | tig0020787:74706-74725 | None:intergenic | 40.0% | |
| ! | CCTCGAGTATGAAATTTTGG+TGG | + | tig0020787:74703-74722 | Msa1386160:three_prime_UTR | 40.0% |
| AGGAAAACGGTGATAGATGG+TGG | - | tig0020787:68757-68776 | None:intergenic | 45.0% | |
| GGAAGAAAGAACCTGAGGAA+TGG | - | tig0020787:68836-68855 | None:intergenic | 45.0% | |
| TGAGAGGAAGAAAGAACCTG+AGG | - | tig0020787:68841-68860 | None:intergenic | 45.0% | |
| !! | GCTGAATTTCTGGAATTCGC+AGG | - | tig0020787:69184-69203 | None:intergenic | 45.0% |
| GCGAATTCCAGAAATTCAGC+AGG | + | tig0020787:69184-69203 | Msa1386160:CDS | 45.0% | |
| !! | CCTCTAAGCATCGAAATCTC+AGG | - | tig0020787:69421-69440 | None:intergenic | 45.0% |
| CCTGAGATTTCGATGCTTAG+AGG | + | tig0020787:69418-69437 | Msa1386160:CDS | 45.0% | |
| CTTAGAGGTGAAGGAAGTAG+TGG | + | tig0020787:69433-69452 | Msa1386160:CDS | 45.0% | |
| TGAGAGTTCGATGAATGGTG+TGG | + | tig0020787:69609-69628 | Msa1386160:CDS | 45.0% | |
| ! | CGATGAATGGTGTGGAGTTT+TGG | + | tig0020787:69617-69636 | Msa1386160:CDS | 45.0% |
| ! | AACCGGTTCTCAGAATTGAC+AGG | - | tig0020787:69679-69698 | None:intergenic | 45.0% |
| CGTGTAAGCTCTTGACCAAT+TGG | - | tig0020787:69703-69722 | None:intergenic | 45.0% | |
| ATTGGTCAAGAGCTTACACG+AGG | + | tig0020787:69703-69722 | Msa1386160:CDS | 45.0% | |
| GCAGCATTCATACCAATCTC+CGG | - | tig0020787:69748-69767 | None:intergenic | 45.0% | |
| CAGCCATGTTTGAAGGAAAG+TGG | - | tig0020787:69842-69861 | None:intergenic | 45.0% | |
| GGTGTAGTGTGAGGAGAAAT+AGG | + | tig0020787:70027-70046 | Msa1386160:intron | 45.0% | |
| GCCAAATAGACAACCCTTTG+TGG | - | tig0020787:70063-70082 | None:intergenic | 45.0% | |
| AAGGCATGCAGAAAAGAGCA+CGG | - | tig0020787:70097-70116 | None:intergenic | 45.0% | |
| ! | TGCTCTTTTCTGCATGCCTT+TGG | + | tig0020787:70097-70116 | Msa1386160:intron | 45.0% |
| !!! | GTTGGGTTTTTTGTTGAGGG+GGG | + | tig0020787:70319-70338 | Msa1386160:intron | 45.0% |
| TGAGGGGGGTAATTAATAGG+GGG | + | tig0020787:70333-70352 | Msa1386160:intron | 45.0% | |
| TGCATACATAAGCATGTGCC+CGG | - | tig0020787:70448-70467 | None:intergenic | 45.0% | |
| ! | TTTTTGTAGGCTGGAATGGG+TGG | + | tig0020787:71091-71110 | Msa1386160:intron | 45.0% |
| ACAACCCCTTTCTCGTTTGA+AGG | + | tig0020787:71190-71209 | Msa1386160:CDS | 45.0% | |
| GCTGATGATATTCTGCGACA+AGG | + | tig0020787:71349-71368 | Msa1386160:CDS | 45.0% | |
| AACAACCAAATGTGGATCCG+GGG | - | tig0020787:71558-71577 | None:intergenic | 45.0% | |
| CAACAACCAAATGTGGATCC+GGG | - | tig0020787:71559-71578 | None:intergenic | 45.0% | |
| !! | CGTACGGGGAAAGTATTATC+GGG | - | tig0020787:71698-71717 | None:intergenic | 45.0% |
| !! | CCGTACGGGGAAAGTATTAT+CGG | - | tig0020787:71699-71718 | None:intergenic | 45.0% |
| CCGATAATACTTTCCCCGTA+CGG | + | tig0020787:71696-71715 | Msa1386160:intron | 45.0% | |
| !! | CTTAAGCTTTGAACCGTACG+GGG | - | tig0020787:71712-71731 | None:intergenic | 45.0% |
| !! | CCTTAAGCTTTGAACCGTAC+GGG | - | tig0020787:71713-71732 | None:intergenic | 45.0% |
| TTAAATGCAGATACCCGGGT+TGG | + | tig0020787:71773-71792 | Msa1386160:intron | 45.0% | |
| AAAGTCGACATTCACCAACC+CGG | - | tig0020787:71790-71809 | None:intergenic | 45.0% | |
| GGTTCTTCACTTATGGGGAT+AGG | + | tig0020787:71840-71859 | Msa1386160:CDS | 45.0% | |
| GTGTGCATGTCTGTAACTGA+AGG | + | tig0020787:72047-72066 | Msa1386160:intron | 45.0% | |
| ! | TGGAGAAGCACACATGTTGA+TGG | + | tig0020787:72203-72222 | Msa1386160:intron | 45.0% |
| CATCTAAGGATCATGGGAAG+TGG | + | tig0020787:72680-72699 | Msa1386160:intron | 45.0% | |
| ATTCGCATGCTGTTGTAAGG+GGG | - | tig0020787:72741-72760 | None:intergenic | 45.0% | |
| ! | AATATCGTTTTCAGCCAGCC+AGG | + | tig0020787:72983-73002 | Msa1386160:intron | 45.0% |
| ! | TTAACTGGACTAGAGGACAG+AGG | - | tig0020787:73087-73106 | None:intergenic | 45.0% |
| AATTAGCAGTGGGGTCTACA+AGG | - | tig0020787:73357-73376 | None:intergenic | 45.0% | |
| AGATCCATCACTTAGTGGTC+AGG | + | tig0020787:73396-73415 | Msa1386160:CDS | 45.0% | |
| CTTACCTGACCACTAAGTGA+TGG | - | tig0020787:73403-73422 | None:intergenic | 45.0% | |
| TGAATTGGGCAACATTACCC+TGG | + | tig0020787:73506-73525 | Msa1386160:intron | 45.0% | |
| TTTCTTGGCACACTACACCA+GGG | - | tig0020787:73526-73545 | None:intergenic | 45.0% | |
| AAACAAACCTGACGAGAGGT+GGG | - | tig0020787:73717-73736 | None:intergenic | 45.0% | |
| TAAACAAACCTGACGAGAGG+TGG | - | tig0020787:73718-73737 | None:intergenic | 45.0% | |
| GGGTTAAGACATACCTGTAC+GGG | - | tig0020787:74181-74200 | None:intergenic | 45.0% | |
| GGGGTTAAGACATACCTGTA+CGG | - | tig0020787:74182-74201 | None:intergenic | 45.0% | |
| TGGGTATGACATCATAGAGG+GGG | - | tig0020787:74214-74233 | None:intergenic | 45.0% | |
| ! | ATCTCCTTGTGTGAGTTGAC+TGG | - | tig0020787:74265-74284 | None:intergenic | 45.0% |
| AAGGAGATACCGTTGTCAGT+CGG | + | tig0020787:74277-74296 | Msa1386160:CDS | 45.0% | |
| CGATCTTCCACTTTCACTGA+TGG | + | tig0020787:74300-74319 | Msa1386160:CDS | 45.0% | |
| TGGTAGTTTGGTTGAGATCC+CGG | + | tig0020787:74320-74339 | Msa1386160:CDS | 45.0% | |
| TAACAAGCCCTGACCATTAC+TGG | - | tig0020787:74614-74633 | None:intergenic | 45.0% | |
| !!! | AATTTTTTTCATATTAATTT+AGG | + | tig0020787:69955-69974 | Msa1386160:intron | 5.0% |
| TCGAGTGAGTGAGTGAGTGA+AGG | - | tig0020787:68777-68796 | None:intergenic | 50.0% | |
| GGAATTCGCAGGTGCAAAAC+AGG | - | tig0020787:69173-69192 | None:intergenic | 50.0% | |
| AAGCACCCCTGCTGAATTTC+TGG | - | tig0020787:69194-69213 | None:intergenic | 50.0% | |
| GGACCAACACTGTGCGAATT+TGG | - | tig0020787:69361-69380 | None:intergenic | 50.0% | |
| CGTCCGAGAAAGGATATGTC+CGG | + | tig0020787:69472-69491 | Msa1386160:CDS | 50.0% | |
| CCACCGGACATATCCTTTCT+CGG | - | tig0020787:69478-69497 | None:intergenic | 50.0% | |
| AAGGTTATTGGTGTGGGTGG+TGG | + | tig0020787:69559-69578 | Msa1386160:CDS | 50.0% | |
| ! | TTATTGGTGTGGGTGGTGGT+GGG | + | tig0020787:69563-69582 | Msa1386160:CDS | 50.0% |
| ! | CGCCTGTCAATTCTGAGAAC+CGG | + | tig0020787:69674-69693 | Msa1386160:CDS | 50.0% |
| TCTGAGAACCGGTTGCCAAT+TGG | + | tig0020787:69685-69704 | Msa1386160:CDS | 50.0% | |
| GCTCTTGACCAATTGGCAAC+CGG | - | tig0020787:69696-69715 | None:intergenic | 50.0% | |
| CAAGAGCTTACACGAGGTCT+TGG | + | tig0020787:69709-69728 | Msa1386160:CDS | 50.0% | |
| !! | TCTTGGTGCTGGTGGTAATC+CGG | + | tig0020787:69726-69745 | Msa1386160:CDS | 50.0% |
| GGCGGTTTATGGAGCTGATA+TGG | + | tig0020787:69795-69814 | Msa1386160:CDS | 50.0% | |
| GCATACATAAGCATGTGCCC+GGG | - | tig0020787:70447-70466 | None:intergenic | 50.0% | |
| CGTATGGGGACTGATGTACA+AGG | - | tig0020787:70573-70592 | None:intergenic | 50.0% | |
| ACATCAGTCCCCATACGACT+AGG | + | tig0020787:70576-70595 | Msa1386160:intron | 50.0% | |
| TGCCAGCAACCTAGTCGTAT+GGG | - | tig0020787:70588-70607 | None:intergenic | 50.0% | |
| ATGCCAGCAACCTAGTCGTA+TGG | - | tig0020787:70589-70608 | None:intergenic | 50.0% | |
| GCTGGCATCTCCACTTCAAT+TGG | + | tig0020787:70601-70620 | Msa1386160:intron | 50.0% | |
| CCGTCCTTCAAACGAGAAAG+GGG | - | tig0020787:71197-71216 | None:intergenic | 50.0% | |
| CCCCTTTCTCGTTTGAAGGA+CGG | + | tig0020787:71194-71213 | Msa1386160:CDS | 50.0% | |
| GCCGTCCTTCAAACGAGAAA+GGG | - | tig0020787:71198-71217 | None:intergenic | 50.0% | |
| CTTTCTCGTTTGAAGGACGG+CGG | + | tig0020787:71197-71216 | Msa1386160:CDS | 50.0% | |
| AGGGCAGTTCAAGCACAAGA+AGG | + | tig0020787:71220-71239 | Msa1386160:CDS | 50.0% | |
| ! | ATTCTGCGACAAGGTGTTCG+TGG | + | tig0020787:71358-71377 | Msa1386160:CDS | 50.0% |
| TTGACATATCCGGTAGTCCC+CGG | + | tig0020787:71538-71557 | Msa1386160:intron | 50.0% | |
| CCCGTACGGTTCAAAGCTTA+AGG | + | tig0020787:71710-71729 | Msa1386160:intron | 50.0% | |
| AAGTCGACATTCACCAACCC+GGG | - | tig0020787:71789-71808 | None:intergenic | 50.0% | |
| ATGGGGATAGGAACTGCAAC+TGG | + | tig0020787:71852-71871 | Msa1386160:CDS | 50.0% | |
| ATTGGTATAGAGAGGGCCAC+TGG | + | tig0020787:72465-72484 | Msa1386160:CDS | 50.0% | |
| AGAGGGCCACTGGAATTGTA+TGG | + | tig0020787:72475-72494 | Msa1386160:CDS | 50.0% | |
| AAGGATCATGGGAAGTGGTC+AGG | + | tig0020787:72685-72704 | Msa1386160:intron | 50.0% | |
| TTCGCATGCTGTTGTAAGGG+GGG | - | tig0020787:72740-72759 | None:intergenic | 50.0% | |
| AAAATACATCCCTGCCTGGC+TGG | - | tig0020787:73000-73019 | None:intergenic | 50.0% | |
| CTTTCTTGGCACACTACACC+AGG | - | tig0020787:73527-73546 | None:intergenic | 50.0% | |
| CACAACAGAAAGAGACGACC+CGG | - | tig0020787:73600-73619 | None:intergenic | 50.0% | |
| TACGGGATTCAAGCGTCAAG+AGG | + | tig0020787:74141-74160 | Msa1386160:CDS | 50.0% | |
| ATGACATCATAGAGGGGGGA+GGG | - | tig0020787:74209-74228 | None:intergenic | 50.0% | |
| TATGACATCATAGAGGGGGG+AGG | - | tig0020787:74210-74229 | None:intergenic | 50.0% | |
| GGGTATGACATCATAGAGGG+GGG | - | tig0020787:74213-74232 | None:intergenic | 50.0% | |
| !! | GCAGGGGTGCTTGCTGTTAA+TGG | + | tig0020787:69202-69221 | Msa1386160:CDS | 55.0% |
| !! | GGGGTGCTTGCTGTTAATGG+AGG | + | tig0020787:69205-69224 | Msa1386160:CDS | 55.0% |
| CAACTCTACGCGTCCGAGAA+AGG | + | tig0020787:69462-69481 | Msa1386160:CDS | 55.0% | |
| CCGAGAAAGGATATGTCCGG+TGG | + | tig0020787:69475-69494 | Msa1386160:CDS | 55.0% | |
| GGATATGTCCGGTGGAGATG+TGG | + | tig0020787:69483-69502 | Msa1386160:CDS | 55.0% | |
| TGGAGATGTGGTCGAAGGGT+TGG | + | tig0020787:69495-69514 | Msa1386160:CDS | 55.0% | |
| ! | GTTATTGGTGTGGGTGGTGG+TGG | + | tig0020787:69562-69581 | Msa1386160:CDS | 55.0% |
| ! | CTTACACGAGGTCTTGGTGC+TGG | + | tig0020787:69715-69734 | Msa1386160:CDS | 55.0% |
| GCTGGTGGTAATCCGGAGAT+TGG | + | tig0020787:69733-69752 | Msa1386160:CDS | 55.0% | |
| TCCCCATACGACTAGGTTGC+TGG | + | tig0020787:70583-70602 | Msa1386160:intron | 55.0% | |
| GCCAGCAACCTAGTCGTATG+GGG | - | tig0020787:70587-70606 | None:intergenic | 55.0% | |
| TTGTAGGCTGGAATGGGTGG+AGG | + | tig0020787:71094-71113 | Msa1386160:intron | 55.0% | |
| CGCCGTCCTTCAAACGAGAA+AGG | - | tig0020787:71199-71218 | None:intergenic | 55.0% | |
| AATGTGGATCCGGGGACTAC+CGG | - | tig0020787:71550-71569 | None:intergenic | 55.0% | |
| GTAGTCCCCGGATCCACATT+TGG | + | tig0020787:71550-71569 | Msa1386160:intron | 55.0% | |
| TCGCATGCTGTTGTAAGGGG+GGG | - | tig0020787:72739-72758 | None:intergenic | 55.0% | |
| TATTGCACCCACCTCTCGTC+AGG | + | tig0020787:73707-73726 | Msa1386160:intron | 55.0% | |
| AAGTGAAGCGAGACCCGTAC+AGG | + | tig0020787:74165-74184 | Msa1386160:CDS | 55.0% | |
| TCATAGAGGGGGGAGGGTTA+GGG | - | tig0020787:74203-74222 | None:intergenic | 55.0% | |
| ATCATAGAGGGGGGAGGGTT+AGG | - | tig0020787:74204-74223 | None:intergenic | 55.0% | |
| CAGGCCAGTCAACTCACACA+AGG | + | tig0020787:74258-74277 | Msa1386160:intron | 55.0% | |
| ! | GGAAGATCGCCGACTGACAA+CGG | - | tig0020787:74289-74308 | None:intergenic | 55.0% |
| TCCGGTGGAGATGTGGTCGA+AGG | + | tig0020787:69490-69509 | Msa1386160:CDS | 60.0% | |
| CCCTTCGACCACATCTCCAC+CGG | - | tig0020787:69494-69513 | None:intergenic | 60.0% | |
| CCGGTGGAGATGTGGTCGAA+GGG | + | tig0020787:69491-69510 | Msa1386160:CDS | 60.0% | |
| !! | ACACGAGGTCTTGGTGCTGG+TGG | + | tig0020787:69718-69737 | Msa1386160:CDS | 60.0% |
| GCTGGAATGGGTGGAGGAAC+TGG | + | tig0020787:71100-71119 | Msa1386160:CDS | 60.0% | |
| ATGGGTGGAGGAACTGGCAC+TGG | + | tig0020787:71106-71125 | Msa1386160:CDS | 60.0% | |
| !! | AACTGGCACTGGTGCAGCTC+CGG | + | tig0020787:71117-71136 | Msa1386160:CDS | 60.0% |
| GGTGCAGCTCCGGTTATTGC+TGG | + | tig0020787:71127-71146 | Msa1386160:CDS | 60.0% | |
| TCTCGTTTGAAGGACGGCGG+AGG | + | tig0020787:71200-71219 | Msa1386160:CDS | 60.0% | |
| CTCGTTTGAAGGACGGCGGA+GGG | + | tig0020787:71201-71220 | Msa1386160:CDS | 60.0% | |
| ! | TCGTTTTCAGCCAGCCAGGC+AGG | + | tig0020787:72987-73006 | Msa1386160:intron | 60.0% |
| ! | CGTTTTCAGCCAGCCAGGCA+GGG | + | tig0020787:72988-73007 | Msa1386160:intron | 60.0% |
| ATAGAGGGGGGAGGGTTAGG+GGG | - | tig0020787:74201-74220 | None:intergenic | 60.0% | |
| CATAGAGGGGGGAGGGTTAG+GGG | - | tig0020787:74202-74221 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020787 | gene | 68675 | 74739 | 68675 | ID=Msa1386160;Name=Msa1386160 |
| tig0020787 | mRNA | 68675 | 74739 | 68675 | ID=Msa1386160-mRNA-1;Parent=Msa1386160;Name=Msa1386160-mRNA-1;_AED=0.10;_eAED=0.10;_QI=247|1|1|1|0.85|0.75|8|353|495 |
| tig0020787 | exon | 68675 | 68843 | 68675 | ID=Msa1386160-mRNA-1:exon:10013;Parent=Msa1386160-mRNA-1 |
| tig0020787 | exon | 69064 | 69828 | 69064 | ID=Msa1386160-mRNA-1:exon:10014;Parent=Msa1386160-mRNA-1 |
| tig0020787 | exon | 71100 | 71399 | 71100 | ID=Msa1386160-mRNA-1:exon:10015;Parent=Msa1386160-mRNA-1 |
| tig0020787 | exon | 71783 | 71873 | 71783 | ID=Msa1386160-mRNA-1:exon:10016;Parent=Msa1386160-mRNA-1 |
| tig0020787 | exon | 72409 | 72533 | 72409 | ID=Msa1386160-mRNA-1:exon:10017;Parent=Msa1386160-mRNA-1 |
| tig0020787 | exon | 73325 | 73417 | 73325 | ID=Msa1386160-mRNA-1:exon:10018;Parent=Msa1386160-mRNA-1 |
| tig0020787 | exon | 74121 | 74186 | 74121 | ID=Msa1386160-mRNA-1:exon:10019;Parent=Msa1386160-mRNA-1 |
| tig0020787 | exon | 74261 | 74739 | 74261 | ID=Msa1386160-mRNA-1:exon:10020;Parent=Msa1386160-mRNA-1 |
| tig0020787 | five_prime_UTR | 68675 | 68843 | 68675 | ID=Msa1386160-mRNA-1:five_prime_utr;Parent=Msa1386160-mRNA-1 |
| tig0020787 | five_prime_UTR | 69064 | 69141 | 69064 | ID=Msa1386160-mRNA-1:five_prime_utr;Parent=Msa1386160-mRNA-1 |
| tig0020787 | CDS | 69142 | 69828 | 69142 | ID=Msa1386160-mRNA-1:cds;Parent=Msa1386160-mRNA-1 |
| tig0020787 | CDS | 71100 | 71399 | 71100 | ID=Msa1386160-mRNA-1:cds;Parent=Msa1386160-mRNA-1 |
| tig0020787 | CDS | 71783 | 71873 | 71783 | ID=Msa1386160-mRNA-1:cds;Parent=Msa1386160-mRNA-1 |
| tig0020787 | CDS | 72409 | 72533 | 72409 | ID=Msa1386160-mRNA-1:cds;Parent=Msa1386160-mRNA-1 |
| tig0020787 | CDS | 73325 | 73417 | 73325 | ID=Msa1386160-mRNA-1:cds;Parent=Msa1386160-mRNA-1 |
| tig0020787 | CDS | 74121 | 74186 | 74121 | ID=Msa1386160-mRNA-1:cds;Parent=Msa1386160-mRNA-1 |
| tig0020787 | CDS | 74261 | 74386 | 74261 | ID=Msa1386160-mRNA-1:cds;Parent=Msa1386160-mRNA-1 |
| tig0020787 | three_prime_UTR | 74387 | 74739 | 74387 | ID=Msa1386160-mRNA-1:three_prime_utr;Parent=Msa1386160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
