Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143180 | XP_003625812.1 | 97.571 | 494 | 12 | 0 | 1 | 494 | 1 | 494 | 0.0 | 980 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143180 | sp|O82533|FTZ21_ARATH | 75.102 | 490 | 101 | 7 | 8 | 493 | 5 | 477 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143180 | G7L633 | 97.571 | 494 | 12 | 0 | 1 | 494 | 1 | 494 | 0.0 | 980 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0143180 | Msa0829800 | 0.800034 | 1.741425e-48 | -8.615850e-47 |
| Msa0143180 | Msa1125620 | 0.901976 | 1.551948e-78 | -8.615850e-47 |
| Msa0143180 | Msa1164660 | 0.992321 | 1.357716e-192 | -8.615850e-47 |
| Msa0143180 | Msa1386160 | 0.995235 | 2.715311e-214 | -8.615850e-47 |
| Msa0143180 | Msa1422290 | 0.804353 | 2.249614e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143180 | MtrunA17_Chr7g0266231 | 97.571 | 494 | 12 | 0 | 1 | 494 | 1 | 494 | 0.0 | 980 |
| Msa0143180 | MtrunA17_Chr1g0178661 | 77.576 | 495 | 90 | 9 | 8 | 493 | 1 | 483 | 0.0 | 672 |
| Msa0143180 | MtrunA17_Chr3g0100581 | 61.290 | 310 | 118 | 1 | 134 | 443 | 54 | 361 | 5.31e-111 | 335 |
| Msa0143180 | MtrunA17_Chr5g0445051 | 58.644 | 295 | 119 | 2 | 150 | 443 | 74 | 366 | 7.07e-108 | 327 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143180 | AT2G36250.2 | 75.102 | 490 | 101 | 7 | 8 | 493 | 5 | 477 | 0.0 | 654 |
| Msa0143180 | AT2G36250.3 | 75.102 | 490 | 101 | 7 | 8 | 493 | 5 | 477 | 0.0 | 654 |
| Msa0143180 | AT2G36250.1 | 75.102 | 490 | 101 | 7 | 8 | 493 | 5 | 477 | 0.0 | 654 |
| Msa0143180 | AT3G52750.3 | 72.746 | 488 | 111 | 6 | 8 | 493 | 5 | 472 | 0.0 | 642 |
| Msa0143180 | AT3G52750.2 | 72.746 | 488 | 111 | 6 | 8 | 493 | 5 | 472 | 0.0 | 642 |
| Msa0143180 | AT3G52750.1 | 72.746 | 488 | 111 | 6 | 8 | 493 | 5 | 472 | 0.0 | 642 |
| Msa0143180 | AT2G36250.4 | 84.211 | 399 | 59 | 2 | 96 | 493 | 1 | 396 | 0.0 | 617 |
| Msa0143180 | AT3G52750.4 | 68.627 | 357 | 90 | 6 | 8 | 362 | 5 | 341 | 9.42e-146 | 421 |
| Msa0143180 | AT5G55280.1 | 56.000 | 350 | 142 | 4 | 94 | 443 | 42 | 379 | 8.90e-108 | 327 |
Find 180 sgRNAs with CRISPR-Local
Find 459 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCACTGCTAATTTAATATT+TGG | 0.110302 | 1_4:+2112198 | Msa0143180:CDS |
| TTTACCACTGCATCAATATT+AGG | 0.115543 | 1_4:+2113769 | Msa0143180:three_prime_UTR |
| CTTCCTCGAGTATGAAATTT+TGG | 0.153986 | 1_4:+2114044 | Msa0143180:three_prime_UTR |
| CCTTTCTTCTTTAAGAATTC+CGG | 0.207755 | 1_4:-2113683 | None:intergenic |
| TCAATACAAGAGGCGGTTTA+TGG | 0.232431 | 1_4:+2108617 | Msa0143180:CDS |
| TAATGCAGGTTCTTCACTTA+TGG | 0.232861 | 1_4:+2110666 | Msa0143180:CDS |
| GGACCAACACTGTGCGAATT+TGG | 0.235876 | 1_4:-2108191 | None:intergenic |
| AAAATTAATGAAAATAAGTT+TGG | 0.239550 | 1_4:+2108110 | Msa0143180:CDS |
| GCAGGGGTGCTTGCTGTTAA+TGG | 0.239998 | 1_4:+2108038 | Msa0143180:CDS |
| AAGCACCCCTGCTGAATTTC+TGG | 0.255111 | 1_4:-2108027 | None:intergenic |
| TTACCACTGCATCAATATTA+GGG | 0.257100 | 1_4:+2113770 | Msa0143180:three_prime_UTR |
| TGTCATTTGGAATAACTATC+AGG | 0.257169 | 1_4:-2110106 | None:intergenic |
| AGGACCTAAAATTGCTATAA+AGG | 0.267143 | 1_4:-2113834 | None:intergenic |
| CACTTTCACTGATGGTAGTT+TGG | 0.270519 | 1_4:+2113652 | Msa0143180:CDS |
| AGATTGAATGCTTCAGTTAC+AGG | 0.271861 | 1_4:-2110158 | None:intergenic |
| GTTATTGGTGTGGGTGGTGG+TGG | 0.281129 | 1_4:+2108395 | Msa0143180:CDS |
| CCTGAGATTTCGATGCTTAG+AGG | 0.292393 | 1_4:+2108251 | Msa0143180:CDS |
| CGATGAATGGTGTGGAGTTT+TGG | 0.299318 | 1_4:+2108450 | Msa0143180:CDS |
| GAAGCAAAGATTAAGGTTAT+TGG | 0.303876 | 1_4:+2108380 | Msa0143180:CDS |
| TTATAATGAAGCAAAGATTA+AGG | 0.307633 | 1_4:+2108373 | Msa0143180:CDS |
| GGCGGTTTATGGAGCTGATA+TGG | 0.325227 | 1_4:+2108628 | Msa0143180:CDS |
| TACAAGGAATTAAAGAAGTT+GGG | 0.325613 | 1_4:-2113742 | None:intergenic |
| GATTGTTAATACTGATGTTC+AGG | 0.330888 | 1_4:+2108472 | Msa0143180:CDS |
| TGCCGATGTTAGAGCTATAA+TGG | 0.340769 | 1_4:+2110642 | Msa0143180:CDS |
| TAACAAGCCCTGACCATTAC+TGG | 0.348539 | 1_4:-2113955 | None:intergenic |
| CTTTCTTCTTTAAGAATTCC+GGG | 0.348604 | 1_4:-2113682 | None:intergenic |
| TGGAAAGTTCTTAGCTTTCA+TGG | 0.354898 | 1_4:-2113863 | None:intergenic |
| AAGGTTATTGGTGTGGGTGG+TGG | 0.356161 | 1_4:+2108392 | Msa0143180:CDS |
| AATGCAGGTTCTTCACTTAT+GGG | 0.360231 | 1_4:+2110667 | Msa0143180:CDS |
| GCTGGAATGGGTGGAGGAAC+TGG | 0.363731 | 1_4:+2109933 | Msa0143180:CDS |
| CAAAGTGTGGAAGATGCAAT+TGG | 0.365810 | 1_4:-2107913 | None:intergenic |
| TGGCATTTCTGATATTATTA+CGG | 0.367696 | 1_4:+2110211 | Msa0143180:CDS |
| GCAGTAAGCAACTTGTCATT+TGG | 0.370958 | 1_4:-2110119 | None:intergenic |
| ACAACCCCTTTCTCGTTTGA+AGG | 0.376860 | 1_4:+2110023 | Msa0143180:CDS |
| AGCCTCAAAACACACAAGTT+TGG | 0.378956 | 1_4:-2113883 | None:intergenic |
| CTCTATACCAATATCTAGTA+AGG | 0.381039 | 1_4:-2111287 | None:intergenic |
| GGAATTCGCAGGTGCAAAAC+AGG | 0.392685 | 1_4:-2108006 | None:intergenic |
| GGACCTAAAATTGCTATAAA+GGG | 0.394750 | 1_4:-2113833 | None:intergenic |
| GGTGCAGCTCCGGTTATTGC+TGG | 0.401104 | 1_4:+2109960 | Msa0143180:CDS |
| ATACAAGGAATTAAAGAAGT+TGG | 0.401561 | 1_4:-2113743 | None:intergenic |
| AGAAAATACCAGTAATGGTC+AGG | 0.403024 | 1_4:+2113947 | Msa0143180:three_prime_UTR |
| GGAAAAGAGTATTAAGCTCT+TGG | 0.405038 | 1_4:-2113719 | None:intergenic |
| CAGTCACCCTTACTAGATAT+TGG | 0.416517 | 1_4:+2111280 | Msa0143180:CDS |
| GGTATCAACATTGTCTCTTA+AGG | 0.417783 | 1_4:-2110084 | None:intergenic |
| CGTGTAAGCTCTTGACCAAT+TGG | 0.419230 | 1_4:-2108533 | None:intergenic |
| TAGGGGTAGAGTTAAACATT+TGG | 0.422128 | 1_4:+2113788 | Msa0143180:three_prime_UTR |
| CGCCTGTCAATTCTGAGAAC+CGG | 0.428266 | 1_4:+2108507 | Msa0143180:CDS |
| TGCTGGTATCACAAAGTCAA+TGG | 0.432173 | 1_4:+2109977 | Msa0143180:CDS |
| ACCTTCTTCAAGTAAGCTAC+TGG | 0.435272 | 1_4:+2113990 | Msa0143180:three_prime_UTR |
| AACTGGCACTGGTGCAGCTC+CGG | 0.436776 | 1_4:+2109950 | Msa0143180:CDS |
| GAGTTTCGATACTGTAAGAA+TGG | 0.438083 | 1_4:+2107980 | Msa0143180:CDS |
| ATGGATTGAAGATGATGTAT+TGG | 0.438837 | 1_4:-2107650 | None:intergenic |
| GCCGTCCTTCAAACGAGAAA+GGG | 0.446918 | 1_4:-2110028 | None:intergenic |
| TTGTTTCAAGTGAAGTCGAC+AGG | 0.449273 | 1_4:+2108164 | Msa0143180:CDS |
| CAAACTACCATCAGTGAAAG+TGG | 0.455244 | 1_4:-2113651 | None:intergenic |
| CAAGAGCTTACACGAGGTCT+TGG | 0.455364 | 1_4:+2108542 | Msa0143180:CDS |
| ATGGGTGGAGGAACTGGCAC+TGG | 0.457183 | 1_4:+2109939 | Msa0143180:CDS |
| CAACTCTACGCGTCCGAGAA+AGG | 0.457651 | 1_4:+2108295 | Msa0143180:CDS |
| TCTTGGTGCTGGTGGTAATC+CGG | 0.460691 | 1_4:+2108559 | Msa0143180:CDS |
| CCACCGGACATATCCTTTCT+CGG | 0.465397 | 1_4:-2108308 | None:intergenic |
| TGGTAGTTTGGTTGAGATCC+CGG | 0.466070 | 1_4:+2113664 | Msa0143180:CDS |
| TCTGAGAACCGGTTGCCAAT+TGG | 0.466227 | 1_4:+2108518 | Msa0143180:CDS |
| GGAATTGTATGGAACATAAC+TGG | 0.468139 | 1_4:+2111319 | Msa0143180:CDS |
| GGGTCTTTGCTATGATGATA+AGG | 0.472830 | 1_4:-2108212 | None:intergenic |
| AGATCCATCACTTAGTGGTC+AGG | 0.473550 | 1_4:+2112230 | Msa0143180:CDS |
| CGCCGTCCTTCAAACGAGAA+AGG | 0.476604 | 1_4:-2110029 | None:intergenic |
| TCTCGTTTGAAGGACGGCGG+AGG | 0.481078 | 1_4:+2110033 | Msa0143180:CDS |
| TCCAAATATTAAATTAGCAG+TGG | 0.484386 | 1_4:-2112199 | None:intergenic |
| GCTCTTGACCAATTGGCAAC+CGG | 0.487109 | 1_4:-2108526 | None:intergenic |
| GTAATAGATCCATCACTTAG+TGG | 0.487207 | 1_4:+2112225 | Msa0143180:CDS |
| TGGATTGAAGATGATGTATT+GGG | 0.491240 | 1_4:-2107649 | None:intergenic |
| TTATTGGTGTGGGTGGTGGT+GGG | 0.491634 | 1_4:+2108396 | Msa0143180:CDS |
| TCATCTTCAATCCATTCCTC+AGG | 0.492702 | 1_4:+2107658 | Msa0143180:five_prime_UTR |
| GATTGAATGCTTCAGTTACA+GGG | 0.493075 | 1_4:-2110157 | None:intergenic |
| ATGGGGATAGGAACTGCAAC+TGG | 0.495317 | 1_4:+2110685 | Msa0143180:CDS |
| CCCCTTTCTCGTTTGAAGGA+CGG | 0.496549 | 1_4:+2110027 | Msa0143180:CDS |
| CCTCTAAGCATCGAAATCTC+AGG | 0.496744 | 1_4:-2108251 | None:intergenic |
| AGCATAACATTGATTGCTAC+GGG | 0.497378 | 1_4:+2113468 | Msa0143180:CDS |
| TTTGTGATACCAGCAATAAC+CGG | 0.498131 | 1_4:-2109969 | None:intergenic |
| CTTAGAGGTGAAGGAAGTAG+TGG | 0.499966 | 1_4:+2108266 | Msa0143180:CDS |
| CAATATCTAGTAAGGGTGAC+TGG | 0.502388 | 1_4:-2111279 | None:intergenic |
| CCGGAATTCTTAAAGAAGAA+AGG | 0.504581 | 1_4:+2113683 | Msa0143180:CDS |
| AAGTGATCTGACCTTGTTTG+AGG | 0.505103 | 1_4:+2111345 | Msa0143180:CDS |
| GCAGCATTCATACCAATCTC+CGG | 0.506208 | 1_4:-2108578 | None:intergenic |
| GCTGAATTTCTGGAATTCGC+AGG | 0.506414 | 1_4:-2108017 | None:intergenic |
| AGAGGGCCACTGGAATTGTA+TGG | 0.506651 | 1_4:+2111308 | Msa0143180:CDS |
| CTCGTTTGAAGGACGGCGGA+GGG | 0.507764 | 1_4:+2110034 | Msa0143180:CDS |
| TGTAACTGAAGCATTCAATC+TGG | 0.508474 | 1_4:+2110160 | Msa0143180:CDS |
| ATCTCCTTGTGTGAGTTGAC+TGG | 0.510362 | 1_4:-2113606 | None:intergenic |
| TTGTAGGCTGGAATGGGTGG+AGG | 0.510444 | 1_4:+2109927 | Msa0143180:intron |
| ACCAGTAGCTTACTTGAAGA+AGG | 0.511076 | 1_4:-2113991 | None:intergenic |
| CGATCTTCCACTTTCACTGA+TGG | 0.512204 | 1_4:+2113644 | Msa0143180:CDS |
| CCAAATATTAAATTAGCAGT+GGG | 0.513309 | 1_4:-2112198 | None:intergenic |
| AGTGAGTGAGTGAAGGAAAA+CGG | 0.514283 | 1_4:-2107599 | None:intergenic |
| AAAGATTAAGGTTATTGGTG+TGG | 0.515818 | 1_4:+2108385 | Msa0143180:CDS |
| GGTTCTTCACTTATGGGGAT+AGG | 0.522575 | 1_4:+2110673 | Msa0143180:CDS |
| GCGAATTCCAGAAATTCAGC+AGG | 0.523863 | 1_4:+2108020 | Msa0143180:CDS |
| TCCGGTGGAGATGTGGTCGA+AGG | 0.524405 | 1_4:+2108323 | Msa0143180:CDS |
| TACAGAGAAAATACCAGTAA+TGG | 0.525695 | 1_4:+2113942 | Msa0143180:three_prime_UTR |
| AAGATTAAGGTTATTGGTGT+GGG | 0.526325 | 1_4:+2108386 | Msa0143180:CDS |
| ATTTCGATGCTTAGAGGTGA+AGG | 0.527070 | 1_4:+2108257 | Msa0143180:CDS |
| GCTGGTATCACAAAGTCAAT+GGG | 0.528789 | 1_4:+2109978 | Msa0143180:CDS |
| TGAAGGAAAACGGTGATTGA+TGG | 0.534962 | 1_4:-2107589 | None:intergenic |
| TGGAGATGTGGTCGAAGGGT+TGG | 0.537479 | 1_4:+2108328 | Msa0143180:CDS |
| ACAAGGAATTAAAGAAGTTG+GGG | 0.540607 | 1_4:-2113741 | None:intergenic |
| AAGTGAAGCGAGACCCGTAC+AGG | 0.541037 | 1_4:+2113509 | Msa0143180:CDS |
| GTTATTTAAATGCAGATACC+CGG | 0.548808 | 1_4:+2110601 | Msa0143180:intron |
| ATTGGTATAGAGAGGGCCAC+TGG | 0.549167 | 1_4:+2111298 | Msa0143180:CDS |
| ATTCTGCGACAAGGTGTTCG+TGG | 0.550129 | 1_4:+2110191 | Msa0143180:CDS |
| GAATGGAACCAAAGAAAATG+AGG | 0.554829 | 1_4:-2107564 | None:intergenic |
| TTTGCTTCATTATAATTACT+CGG | 0.555041 | 1_4:-2108365 | None:intergenic |
| CTTAGCTTTCATGGACAACA+AGG | 0.555893 | 1_4:-2113854 | None:intergenic |
| AAAATGAGAAATTCAAAGTG+TGG | 0.559812 | 1_4:-2107926 | None:intergenic |
| GGAAGAAAGAACCTGAGGAA+TGG | 0.563392 | 1_4:-2107669 | None:intergenic |
| AACCGGTTCTCAGAATTGAC+AGG | 0.563659 | 1_4:-2108509 | None:intergenic |
| CTTACCTGACCACTAAGTGA+TGG | 0.565428 | 1_4:-2112234 | None:intergenic |
| GTCATTTGGAATAACTATCA+GGG | 0.565686 | 1_4:-2110105 | None:intergenic |
| CGTCCGAGAAAGGATATGTC+CGG | 0.566891 | 1_4:+2108305 | Msa0143180:CDS |
| AATTAGCAGTGGGGTCTACA+AGG | 0.567960 | 1_4:-2112188 | None:intergenic |
| CATTTCGTTATCAAGAACAA+TGG | 0.570737 | 1_4:+2107507 | Msa0143180:five_prime_UTR |
| AAAGTGTGGAAGATGCAATT+GGG | 0.571201 | 1_4:-2107912 | None:intergenic |
| CCCTTCGACCACATCTCCAC+CGG | 0.573793 | 1_4:-2108324 | None:intergenic |
| GGGTTAAGACATACCTGTAC+GGG | 0.573796 | 1_4:-2113522 | None:intergenic |
| CTTACACGAGGTCTTGGTGC+TGG | 0.574946 | 1_4:+2108548 | Msa0143180:CDS |
| GGAAGATCGCCGACTGACAA+CGG | 0.574950 | 1_4:-2113630 | None:intergenic |
| GGATATGTCCGGTGGAGATG+TGG | 0.576767 | 1_4:+2108316 | Msa0143180:CDS |
| GCTGGTGGTAATCCGGAGAT+TGG | 0.577631 | 1_4:+2108566 | Msa0143180:CDS |
| TACTAGATATTGGTATAGAG+AGG | 0.578242 | 1_4:+2111290 | Msa0143180:CDS |
| GAGCATAACATTGATTGCTA+CGG | 0.579728 | 1_4:+2113467 | Msa0143180:CDS |
| TACCCCTAATATTGATGCAG+TGG | 0.580979 | 1_4:-2113773 | None:intergenic |
| AACGGTGATTGATGGTGGAA+TGG | 0.581223 | 1_4:-2107581 | None:intergenic |
| GTGAGTGAGTGAGTGAGTGA+AGG | 0.581251 | 1_4:-2107606 | None:intergenic |
| TTAAATGCAGATACCCGGGT+TGG | 0.583340 | 1_4:+2110606 | Msa0143180:intron |
| AGAGCTATAATGGCTAATGC+AGG | 0.588135 | 1_4:+2110652 | Msa0143180:CDS |
| GTCGTATATAACTTCTGCTG+CGG | 0.589202 | 1_4:-2112166 | None:intergenic |
| ACACGAGGTCTTGGTGCTGG+TGG | 0.589485 | 1_4:+2108551 | Msa0143180:CDS |
| ATGCAGGTTCTTCACTTATG+GGG | 0.590064 | 1_4:+2110668 | Msa0143180:CDS |
| AGGAAAACGGTGATTGATGG+TGG | 0.594010 | 1_4:-2107586 | None:intergenic |
| ATTAAGGTTATTGGTGTGGG+TGG | 0.596357 | 1_4:+2108389 | Msa0143180:CDS |
| AGCCATTATAGCTCTAACAT+CGG | 0.596517 | 1_4:-2110644 | None:intergenic |
| GGGGTTAAGACATACCTGTA+CGG | 0.601158 | 1_4:-2113523 | None:intergenic |
| AAGTAAAGAGTCAATACAAG+AGG | 0.601747 | 1_4:+2108607 | Msa0143180:CDS |
| TTACCAAATTCGCACAGTGT+TGG | 0.602529 | 1_4:+2108188 | Msa0143180:CDS |
| TCAATGGGTATACTAACTGT+TGG | 0.603720 | 1_4:+2109993 | Msa0143180:CDS |
| TCTATACCAATATCTAGTAA+GGG | 0.604464 | 1_4:-2111286 | None:intergenic |
| GGTGTTAACAACAGAAAGTG+TGG | 0.611534 | 1_4:+2108140 | Msa0143180:CDS |
| CCACCAAAATTTCATACTCG+AGG | 0.614376 | 1_4:-2114047 | None:intergenic |
| GAAAATACCAGTAATGGTCA+GGG | 0.617023 | 1_4:+2113948 | Msa0143180:three_prime_UTR |
| TAAAGAGTCAATACAAGAGG+CGG | 0.618334 | 1_4:+2108610 | Msa0143180:CDS |
| AGGGCAGTTCAAGCACAAGA+AGG | 0.618926 | 1_4:+2110053 | Msa0143180:CDS |
| ACTAGATATTGGTATAGAGA+GGG | 0.622162 | 1_4:+2111291 | Msa0143180:CDS |
| AAAGTCGACATTCACCAACC+CGG | 0.625860 | 1_4:-2110620 | None:intergenic |
| ATGATTGAGAGTTCGATGAA+TGG | 0.627081 | 1_4:+2108437 | Msa0143180:CDS |
| TGCAGTGGTAAAGAAATACA+AGG | 0.629824 | 1_4:-2113758 | None:intergenic |
| CTTTCTCGTTTGAAGGACGG+CGG | 0.630792 | 1_4:+2110030 | Msa0143180:CDS |
| TTATTTAAATGCAGATACCC+GGG | 0.634762 | 1_4:+2110602 | Msa0143180:intron |
| CCGGTGGAGATGTGGTCGAA+GGG | 0.635066 | 1_4:+2108324 | Msa0143180:CDS |
| CCGTCCTTCAAACGAGAAAG+GGG | 0.635157 | 1_4:-2110027 | None:intergenic |
| TACCACTGCATCAATATTAG+GGG | 0.635255 | 1_4:+2113771 | Msa0143180:three_prime_UTR |
| TTGTATTGAAGGGAAAACGA+GGG | 0.636472 | 1_4:+2111231 | Msa0143180:intron |
| AAGTCGACATTCACCAACCC+GGG | 0.639911 | 1_4:-2110619 | None:intergenic |
| CGAATTCCAGAAATTCAGCA+GGG | 0.647094 | 1_4:+2108021 | Msa0143180:CDS |
| TACGGGATTCAAGCGTCAAG+AGG | 0.648241 | 1_4:+2113485 | Msa0143180:CDS |
| CCGAGAAAGGATATGTCCGG+TGG | 0.651747 | 1_4:+2108308 | Msa0143180:CDS |
| TATGTTCCATACAATTCCAG+TGG | 0.652303 | 1_4:-2111314 | None:intergenic |
| TGTTTCAAGTGAAGTCGACA+GGG | 0.654076 | 1_4:+2108165 | Msa0143180:CDS |
| CAGGCCAGTCAACTCACACA+AGG | 0.654525 | 1_4:+2113602 | Msa0143180:intron |
| TGAGAGTTCGATGAATGGTG+TGG | 0.654606 | 1_4:+2108442 | Msa0143180:CDS |
| AATGGAACCAAAGAAAATGA+GGG | 0.656068 | 1_4:-2107563 | None:intergenic |
| GGGGTGCTTGCTGTTAATGG+AGG | 0.662779 | 1_4:+2108041 | Msa0143180:CDS |
| ATTGAATGCTTCAGTTACAG+GGG | 0.680898 | 1_4:-2110156 | None:intergenic |
| TTTGTATTGAAGGGAAAACG+AGG | 0.683065 | 1_4:+2111230 | Msa0143180:intron |
| AAGGAGATACCGTTGTCAGT+CGG | 0.686727 | 1_4:+2113621 | Msa0143180:CDS |
| GTAGCTAACTACCTCAAACA+AGG | 0.689337 | 1_4:-2111356 | None:intergenic |
| CAAGGAATTAAAGAAGTTGG+GGG | 0.689607 | 1_4:-2113740 | None:intergenic |
| GAATTCCAGAAATTCAGCAG+GGG | 0.694289 | 1_4:+2108022 | Msa0143180:CDS |
| CAAATATTAAATTAGCAGTG+GGG | 0.711632 | 1_4:-2112197 | None:intergenic |
| ATTGTATGGAACATAACTGG+TGG | 0.718370 | 1_4:+2111322 | Msa0143180:CDS |
| GCTGATGATATTCTGCGACA+AGG | 0.719167 | 1_4:+2110182 | Msa0143180:CDS |
| ATTGGTCAAGAGCTTACACG+AGG | 0.768210 | 1_4:+2108536 | Msa0143180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTGAGATATTATTTA+GGG | - | chr1_4:2107854-2107873 | None:intergenic | 10.0% |
| !! | TAATAATTGAGATATTATTT+AGG | - | chr1_4:2107855-2107874 | None:intergenic | 10.0% |
| !!! | TTATTATTATTTTCATTAAC+AGG | + | chr1_4:2107878-2107897 | Msa0143180:intron | 10.0% |
| !! | AAAATTAATGAAAATAAGTT+TGG | + | chr1_4:2108110-2108129 | Msa0143180:CDS | 10.0% |
| !!! | ATTTTTAAATTAGTTTTATG+TGG | + | chr1_4:2109725-2109744 | Msa0143180:intron | 10.0% |
| !! | ATTTAAATAACATAATTAAC+AGG | - | chr1_4:2110592-2110611 | None:intergenic | 10.0% |
| !! | TAAATTAACATATATCTAAT+AGG | + | chr1_4:2111610-2111629 | Msa0143180:intron | 10.0% |
| !! | AAATTAACATATATCTAATA+GGG | + | chr1_4:2111611-2111630 | Msa0143180:intron | 10.0% |
| !! | AAATAACTAGAATATTTATA+TGG | - | chr1_4:2111694-2111713 | None:intergenic | 10.0% |
| !!! | TAAATATTCTAGTTATTTTT+AGG | + | chr1_4:2111696-2111715 | Msa0143180:intron | 10.0% |
| !!! | AAAAAATTCTAATTTTTTTC+AGG | - | chr1_4:2112948-2112967 | None:intergenic | 10.0% |
| !!! | TATAATATTTTGAATTTTTC+TGG | + | chr1_4:2113074-2113093 | Msa0143180:intron | 10.0% |
| !!! | TGAAAATTGAAAATTTTATA+GGG | + | chr1_4:2113158-2113177 | Msa0143180:intron | 10.0% |
| !! | AAACTAATTTAAAAATGCAT+AGG | - | chr1_4:2109721-2109740 | None:intergenic | 15.0% |
| !!! | AAATCAAAACTTATTTTTGT+AGG | + | chr1_4:2109911-2109930 | Msa0143180:intron | 15.0% |
| !! | TTAGTTAATACAAAAACTAA+TGG | - | chr1_4:2110449-2110468 | None:intergenic | 15.0% |
| !! | ATCCAAAAAAAACAATTTAA+AGG | + | chr1_4:2110970-2110989 | Msa0143180:intron | 15.0% |
| !!! | AACCTTTAAATTGTTTTTTT+TGG | - | chr1_4:2110975-2110994 | None:intergenic | 15.0% |
| !! | AATTAACATATATCTAATAG+GGG | + | chr1_4:2111612-2111631 | Msa0143180:intron | 15.0% |
| !!! | GGTTAACATTTAAAATTATT+GGG | - | chr1_4:2111737-2111756 | None:intergenic | 15.0% |
| !!! | TGGTTAACATTTAAAATTAT+TGG | - | chr1_4:2111738-2111757 | None:intergenic | 15.0% |
| !!! | CAGTTAAAAAAAAAAACTTT+TGG | - | chr1_4:2111758-2111777 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTTTTCAATTACT+TGG | + | chr1_4:2111849-2111868 | Msa0143180:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | - | chr1_4:2112843-2112862 | None:intergenic | 15.0% |
| !!! | CATAAATTAAGTTGAAAATA+GGG | - | chr1_4:2112874-2112893 | None:intergenic | 15.0% |
| !!! | ACATAAATTAAGTTGAAAAT+AGG | - | chr1_4:2112875-2112894 | None:intergenic | 15.0% |
| !!! | AAATTTTCAATTTTCACTTT+TGG | - | chr1_4:2113154-2113173 | None:intergenic | 15.0% |
| !!! | GTGAAAATTGAAAATTTTAT+AGG | + | chr1_4:2113157-2113176 | Msa0143180:intron | 15.0% |
| !!! | TTAGTACACAATTTTATAAT+GGG | - | chr1_4:2113261-2113280 | None:intergenic | 15.0% |
| !!! | TTTAGTACACAATTTTATAA+TGG | - | chr1_4:2113262-2113281 | None:intergenic | 15.0% |
| !! | ATAAAATTGTGTACTAAAAA+AGG | + | chr1_4:2113264-2113283 | Msa0143180:intron | 15.0% |
| !! | TAAAATTGTGTACTAAAAAA+GGG | + | chr1_4:2113265-2113284 | Msa0143180:intron | 15.0% |
| !! | ATTAAAGCGAATTAATTGTA+GGG | - | chr1_4:2107792-2107811 | None:intergenic | 20.0% |
| !! | TAATTAAGTAACTAACTAAC+TGG | - | chr1_4:2107820-2107839 | None:intergenic | 20.0% |
| !!! | TGAAAATAAGTTTGGATTTT+CGG | + | chr1_4:2108118-2108137 | Msa0143180:CDS | 20.0% |
| !! | TTTGCTTCATTATAATTACT+CGG | - | chr1_4:2108368-2108387 | None:intergenic | 20.0% |
| !! | TTATAATGAAGCAAAGATTA+AGG | + | chr1_4:2108373-2108392 | Msa0143180:CDS | 20.0% |
| !!! | CTACATTACAGTTTTATATT+TGG | + | chr1_4:2108697-2108716 | Msa0143180:intron | 20.0% |
| !! | TTAAATAATACTAGACTGTT+GGG | + | chr1_4:2109135-2109154 | Msa0143180:intron | 20.0% |
| !! | TTTATTTAAGTGAAGAAGTT+TGG | - | chr1_4:2109252-2109271 | None:intergenic | 20.0% |
| !!! | TTCTTCTTCTAAAATTCAAA+AGG | - | chr1_4:2109755-2109774 | None:intergenic | 20.0% |
| !! | AGGTTTCAGAAATATTATTT+GGG | - | chr1_4:2110772-2110791 | None:intergenic | 20.0% |
| !! | TAGGTTTCAGAAATATTATT+TGG | - | chr1_4:2110773-2110792 | None:intergenic | 20.0% |
| !! | GTGATACTCAAATTATATAT+AGG | + | chr1_4:2110826-2110845 | Msa0143180:intron | 20.0% |
| !! | AACAAATGATAAATCTGTAA+GGG | - | chr1_4:2111390-2111409 | None:intergenic | 20.0% |
| !! | TAACAAATGATAAATCTGTA+AGG | - | chr1_4:2111391-2111410 | None:intergenic | 20.0% |
| !! | AATAAACTTGTGAAACAAAA+AGG | - | chr1_4:2111466-2111485 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTTTTAACTGACT+TGG | + | chr1_4:2111761-2111780 | Msa0143180:intron | 20.0% |
| !! | TTCATACAAATAACATTAGA+GGG | - | chr1_4:2112274-2112293 | None:intergenic | 20.0% |
| !! | TTTCATACAAATAACATTAG+AGG | - | chr1_4:2112275-2112294 | None:intergenic | 20.0% |
| !!! | ATATTTTTCCTGAAATGAAT+TGG | + | chr1_4:2112325-2112344 | Msa0143180:intron | 20.0% |
| !!! | TATTTTTCCTGAAATGAATT+GGG | + | chr1_4:2112326-2112345 | Msa0143180:intron | 20.0% |
| !!! | AATTTAGAACTTTTGTATCT+AGG | - | chr1_4:2112405-2112424 | None:intergenic | 20.0% |
| !!! | AAAGTTCTAAATTCTTTAAC+CGG | + | chr1_4:2112412-2112431 | Msa0143180:intron | 20.0% |
| !!! | TTAAATAGAAAGAGTATAAG+AGG | - | chr1_4:2112493-2112512 | None:intergenic | 20.0% |
| !!! | ATGTATGTGTTATTTAAGTA+GGG | + | chr1_4:2112662-2112681 | Msa0143180:intron | 20.0% |
| !!! | AAAAGGGTTAAATATGTTTT+TGG | + | chr1_4:2112756-2112775 | Msa0143180:intron | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | - | chr1_4:2113218-2113237 | None:intergenic | 20.0% |
| !!! | TAAAATTTTCCTTCAACTTT+TGG | + | chr1_4:2112816-2112835 | Msa0143180:intron | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | - | chr1_4:2112844-2112863 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | + | chr1_4:2112847-2112866 | Msa0143180:intron | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | + | chr1_4:2113126-2113145 | Msa0143180:intron | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | + | chr1_4:2113127-2113146 | Msa0143180:intron | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | + | chr1_4:2113218-2113237 | Msa0143180:intron | 20.0% |
| !!! | TAATGGGTTAAATATGTTTT+TGG | - | chr1_4:2113245-2113264 | None:intergenic | 20.0% |
| ! | GATTAAAGCGAATTAATTGT+AGG | - | chr1_4:2107793-2107812 | None:intergenic | 25.0% |
| ! | AAAATGAGAAATTCAAAGTG+TGG | - | chr1_4:2107929-2107948 | None:intergenic | 25.0% |
| !! | GAAAATAAGTTTGGATTTTC+GGG | + | chr1_4:2108119-2108138 | Msa0143180:CDS | 25.0% |
| ! | ATATAAATCATGTCTACACA+TGG | - | chr1_4:2108747-2108766 | None:intergenic | 25.0% |
| ! | AGAATAGAGTAATACATGAT+TGG | + | chr1_4:2108820-2108839 | Msa0143180:intron | 25.0% |
| ! | CTTAAATAATACTAGACTGT+TGG | + | chr1_4:2109134-2109153 | Msa0143180:intron | 25.0% |
| ! | ACAAACGTATCATTAATATC+AGG | + | chr1_4:2109214-2109233 | Msa0143180:intron | 25.0% |
| ! | TCACTTAAATAAAATCAACC+CGG | + | chr1_4:2109259-2109278 | Msa0143180:intron | 25.0% |
| !! | CGAAGTTGTTGTATATTTTA+AGG | - | chr1_4:2109342-2109361 | None:intergenic | 25.0% |
| !! | GAAGCTCATTTTATGTTAAA+AGG | + | chr1_4:2109456-2109475 | Msa0143180:intron | 25.0% |
| !! | TAATTTAAAGTGACATCCTA+GGG | - | chr1_4:2109590-2109609 | None:intergenic | 25.0% |
| !! | ATAATTTAAAGTGACATCCT+AGG | - | chr1_4:2109591-2109610 | None:intergenic | 25.0% |
| !!! | TATGTGGATTTTTCAGAATT+GGG | + | chr1_4:2109831-2109850 | Msa0143180:intron | 25.0% |
| ! | TGGCATTTCTGATATTATTA+CGG | + | chr1_4:2110211-2110230 | Msa0143180:CDS | 25.0% |
| ! | TTTCTGATATTATTACGGTA+TGG | + | chr1_4:2110216-2110235 | Msa0143180:intron | 25.0% |
| ! | AACTAAACAAAGCAACAAAA+GGG | - | chr1_4:2110276-2110295 | None:intergenic | 25.0% |
| ! | AAACTAAACAAAGCAACAAA+AGG | - | chr1_4:2110277-2110296 | None:intergenic | 25.0% |
| ! | TCTGATTGTATAGTAGTAAA+AGG | + | chr1_4:2110310-2110329 | Msa0143180:intron | 25.0% |
| ! | AACGAATAAAGACACAATTA+TGG | - | chr1_4:2110351-2110370 | None:intergenic | 25.0% |
| !!! | TTTATTCGTTTTGACATATC+CGG | + | chr1_4:2110361-2110380 | Msa0143180:intron | 25.0% |
| !!! | TTTTTTATCAGTTCTAGATG+CGG | + | chr1_4:2110479-2110498 | Msa0143180:intron | 25.0% |
| ! | TGATACGCTAATATAACATT+TGG | - | chr1_4:2110856-2110875 | None:intergenic | 25.0% |
| ! | TGTTATATTAGCGTATCATA+TGG | + | chr1_4:2110858-2110877 | Msa0143180:intron | 25.0% |
| ! | AACTGATGAGCATATTATTA+TGG | + | chr1_4:2111158-2111177 | Msa0143180:intron | 25.0% |
| ! | TTCAATTATACATGTAACCA+TGG | - | chr1_4:2111185-2111204 | None:intergenic | 25.0% |
| !! | TAGCTTCTTTTTGTATTGAA+GGG | + | chr1_4:2111221-2111240 | Msa0143180:intron | 25.0% |
| ! | TCTATACCAATATCTAGTAA+GGG | - | chr1_4:2111289-2111308 | None:intergenic | 25.0% |
| ! | GATAACACTACTATATTAAC+TGG | - | chr1_4:2111936-2111955 | None:intergenic | 25.0% |
| !!! | TATAAACTTGAGTTTTGAAG+TGG | + | chr1_4:2111977-2111996 | Msa0143180:intron | 25.0% |
| ! | ATATTTCTTTGTTCACAGTA+GGG | - | chr1_4:2112030-2112049 | None:intergenic | 25.0% |
| ! | TATATTTCTTTGTTCACAGT+AGG | - | chr1_4:2112031-2112050 | None:intergenic | 25.0% |
| ! | CATTTACCTGTACATTATAA+AGG | - | chr1_4:2112146-2112165 | None:intergenic | 25.0% |
| ! | CAAATATTAAATTAGCAGTG+GGG | - | chr1_4:2112200-2112219 | None:intergenic | 25.0% |
| ! | CCAAATATTAAATTAGCAGT+GGG | - | chr1_4:2112201-2112220 | None:intergenic | 25.0% |
| ! | TCCAAATATTAAATTAGCAG+TGG | - | chr1_4:2112202-2112221 | None:intergenic | 25.0% |
| !!! | AAGTTCTAAATTCTTTAACC+GGG | + | chr1_4:2112413-2112432 | Msa0143180:intron | 25.0% |
| ! | CAATATTTCCGAACAAAAAA+TGG | - | chr1_4:2112526-2112545 | None:intergenic | 25.0% |
| !! | AAATGTTTTGTACAGAATAG+AGG | + | chr1_4:2112637-2112656 | Msa0143180:intron | 25.0% |
| !!! | CATGTATGTGTTATTTAAGT+AGG | + | chr1_4:2112661-2112680 | Msa0143180:intron | 25.0% |
| ! | GAACATTGTTAAACTCATTA+TGG | - | chr1_4:2112714-2112733 | None:intergenic | 25.0% |
| ! | AACGAAGGATCTATTATAAA+AGG | + | chr1_4:2112739-2112758 | Msa0143180:intron | 25.0% |
| ! | ACGAAGGATCTATTATAAAA+GGG | + | chr1_4:2112740-2112759 | Msa0143180:intron | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | - | chr1_4:2113217-2113236 | None:intergenic | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr1_4:2113187-2113206 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr1_4:2113186-2113205 | None:intergenic | 25.0% |
| ! | TTATAGGGATTAAAAGTTGA+AGG | + | chr1_4:2113173-2113192 | Msa0143180:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr1_4:2113186-2113205 | Msa0143180:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | chr1_4:2113187-2113206 | Msa0143180:intron | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | + | chr1_4:2113217-2113236 | Msa0143180:intron | 25.0% |
| !!! | CTTTGAGTTAACTTTTTTCA+TGG | - | chr1_4:2113376-2113395 | None:intergenic | 25.0% |
| ! | TTGACAAAAACCACAATTAT+GGG | - | chr1_4:2113577-2113596 | None:intergenic | 25.0% |
| ! | TTTGACAAAAACCACAATTA+TGG | - | chr1_4:2113578-2113597 | None:intergenic | 25.0% |
| ! | TACAAGGAATTAAAGAAGTT+GGG | - | chr1_4:2113745-2113764 | None:intergenic | 25.0% |
| ! | ATACAAGGAATTAAAGAAGT+TGG | - | chr1_4:2113746-2113765 | None:intergenic | 25.0% |
| CATTTCGTTATCAAGAACAA+TGG | + | chr1_4:2107507-2107526 | Msa0143180:five_prime_UTR | 30.0% | |
| ! | AACAAAACCCTCATTTTCTT+TGG | + | chr1_4:2107556-2107575 | Msa0143180:five_prime_UTR | 30.0% |
| AATGGAACCAAAGAAAATGA+GGG | - | chr1_4:2107566-2107585 | None:intergenic | 30.0% | |
| TGGATTGAAGATGATGTATT+GGG | - | chr1_4:2107652-2107671 | None:intergenic | 30.0% | |
| ! | ATGGATTGAAGATGATGTAT+TGG | - | chr1_4:2107653-2107672 | None:intergenic | 30.0% |
| GAAGCAAAGATTAAGGTTAT+TGG | + | chr1_4:2108380-2108399 | Msa0143180:CDS | 30.0% | |
| AAAGATTAAGGTTATTGGTG+TGG | + | chr1_4:2108385-2108404 | Msa0143180:CDS | 30.0% | |
| AAGATTAAGGTTATTGGTGT+GGG | + | chr1_4:2108386-2108405 | Msa0143180:CDS | 30.0% | |
| GATTGTTAATACTGATGTTC+AGG | + | chr1_4:2108472-2108491 | Msa0143180:CDS | 30.0% | |
| AAGTAAAGAGTCAATACAAG+AGG | + | chr1_4:2108607-2108626 | Msa0143180:CDS | 30.0% | |
| TAGAGTAATACATGATTGGT+AGG | + | chr1_4:2108824-2108843 | Msa0143180:intron | 30.0% | |
| TAATACATGATTGGTAGGAA+AGG | + | chr1_4:2108829-2108848 | Msa0143180:intron | 30.0% | |
| CAATGCATGATAGAGTATAA+AGG | - | chr1_4:2108993-2109012 | None:intergenic | 30.0% | |
| CACTTAAATAAAATCAACCC+GGG | + | chr1_4:2109260-2109279 | Msa0143180:intron | 30.0% | |
| TTCGACAAATAAATGAGTGA+AGG | - | chr1_4:2109490-2109509 | None:intergenic | 30.0% | |
| TTTCGAAATATCATTTCCCT+AGG | + | chr1_4:2109571-2109590 | Msa0143180:intron | 30.0% | |
| TGCAATTTCAAATACTGTGA+TGG | + | chr1_4:2109644-2109663 | Msa0143180:intron | 30.0% | |
| !! | ATTTTAAGTCAATGCCTATG+TGG | + | chr1_4:2109815-2109834 | Msa0143180:intron | 30.0% |
| ! | CAATTCTGAAAAATCCACAT+AGG | - | chr1_4:2109832-2109851 | None:intergenic | 30.0% |
| !! | CTATGTGGATTTTTCAGAAT+TGG | + | chr1_4:2109830-2109849 | Msa0143180:intron | 30.0% |
| AATTCCAAATTGTTAGTCGT+TGG | + | chr1_4:2109869-2109888 | Msa0143180:intron | 30.0% | |
| TATACCAACGACTAACAATT+TGG | - | chr1_4:2109876-2109895 | None:intergenic | 30.0% | |
| !!! | CAAAACTTATTTTTGTAGGC+TGG | + | chr1_4:2109915-2109934 | Msa0143180:intron | 30.0% |
| !!! | TTATTTTTGTAGGCTGGAAT+GGG | + | chr1_4:2109921-2109940 | Msa0143180:intron | 30.0% |
| ! | GTCATTTGGAATAACTATCA+GGG | - | chr1_4:2110108-2110127 | None:intergenic | 30.0% |
| ! | TGTCATTTGGAATAACTATC+AGG | - | chr1_4:2110109-2110128 | None:intergenic | 30.0% |
| AAAAACTCAACAACCAAATG+TGG | - | chr1_4:2110399-2110418 | None:intergenic | 30.0% | |
| GTTATTTAAATGCAGATACC+CGG | + | chr1_4:2110601-2110620 | Msa0143180:intron | 30.0% | |
| TTATTTAAATGCAGATACCC+GGG | + | chr1_4:2110602-2110621 | Msa0143180:intron | 30.0% | |
| ! | CTAGCTTCTTTTTGTATTGA+AGG | + | chr1_4:2111220-2111239 | Msa0143180:intron | 30.0% |
| CTCTATACCAATATCTAGTA+AGG | - | chr1_4:2111290-2111309 | None:intergenic | 30.0% | |
| TACTAGATATTGGTATAGAG+AGG | + | chr1_4:2111290-2111309 | Msa0143180:CDS | 30.0% | |
| ACTAGATATTGGTATAGAGA+GGG | + | chr1_4:2111291-2111310 | Msa0143180:CDS | 30.0% | |
| AAACTTGTGAAACAAAAAGG+AGG | - | chr1_4:2111463-2111482 | None:intergenic | 30.0% | |
| TTTAGATCATCTAAGGATCA+TGG | + | chr1_4:2111506-2111525 | Msa0143180:intron | 30.0% | |
| TTAGATCATCTAAGGATCAT+GGG | + | chr1_4:2111507-2111526 | Msa0143180:intron | 30.0% | |
| TATAGTAATGATAGAACACC+AGG | - | chr1_4:2111790-2111809 | None:intergenic | 30.0% | |
| ! | TACTATATTAACTGGACTAG+AGG | - | chr1_4:2111928-2111947 | None:intergenic | 30.0% |
| CAAGTTTATAAATAGCTCAC+AGG | - | chr1_4:2111967-2111986 | None:intergenic | 30.0% | |
| TCATACTCTTGTATCTAAGA+TGG | + | chr1_4:2112119-2112138 | Msa0143180:intron | 30.0% | |
| CCCACTGCTAATTTAATATT+TGG | + | chr1_4:2112198-2112217 | Msa0143180:CDS | 30.0% | |
| !!! | ACTGAACACCATTTTTTGTT+CGG | + | chr1_4:2112515-2112534 | Msa0143180:intron | 30.0% |
| TCTATTGTTACGGAATAGAA+GGG | + | chr1_4:2112589-2112608 | Msa0143180:intron | 30.0% | |
| GTTAAACTCATTATGGAACA+TGG | - | chr1_4:2112707-2112726 | None:intergenic | 30.0% | |
| TACATGAAACCTACCATATA+TGG | - | chr1_4:2113300-2113319 | None:intergenic | 30.0% | |
| CTATATGAAACCAAATGACA+TGG | - | chr1_4:2113445-2113464 | None:intergenic | 30.0% | |
| ! | CATGTCATTTGGTTTCATAT+AGG | + | chr1_4:2113443-2113462 | Msa0143180:intron | 30.0% |
| ! | CTTTCTTCTTTAAGAATTCC+GGG | - | chr1_4:2113685-2113704 | None:intergenic | 30.0% |
| ! | CCTTTCTTCTTTAAGAATTC+CGG | - | chr1_4:2113686-2113705 | None:intergenic | 30.0% |
| ACAAGGAATTAAAGAAGTTG+GGG | - | chr1_4:2113744-2113763 | None:intergenic | 30.0% | |
| TTTACCACTGCATCAATATT+AGG | + | chr1_4:2113769-2113788 | Msa0143180:three_prime_UTR | 30.0% | |
| TTACCACTGCATCAATATTA+GGG | + | chr1_4:2113770-2113789 | Msa0143180:three_prime_UTR | 30.0% | |
| ATTGCTATAAAGGGCAAAAA+CGG | - | chr1_4:2113827-2113846 | None:intergenic | 30.0% | |
| ! | TTGCCCTTTATAGCAATTTT+AGG | + | chr1_4:2113830-2113849 | Msa0143180:three_prime_UTR | 30.0% |
| GGACCTAAAATTGCTATAAA+GGG | - | chr1_4:2113836-2113855 | None:intergenic | 30.0% | |
| AGGACCTAAAATTGCTATAA+AGG | - | chr1_4:2113837-2113856 | None:intergenic | 30.0% | |
| TACAGAGAAAATACCAGTAA+TGG | + | chr1_4:2113942-2113961 | Msa0143180:three_prime_UTR | 30.0% | |
| !!! | ATGAGGGTTTTGTTACTTCA+CGG | - | chr1_4:2107550-2107569 | None:intergenic | 35.0% |
| GAATGGAACCAAAGAAAATG+AGG | - | chr1_4:2107567-2107586 | None:intergenic | 35.0% | |
| AAAGTGTGGAAGATGCAATT+GGG | - | chr1_4:2107915-2107934 | None:intergenic | 35.0% | |
| GAGTTTCGATACTGTAAGAA+TGG | + | chr1_4:2107980-2107999 | Msa0143180:CDS | 35.0% | |
| !!! | TCATAGCAAAGACCCTTTTT+TGG | + | chr1_4:2108220-2108239 | Msa0143180:CDS | 35.0% |
| CAGGATGAAGATCCAAAAAA+GGG | - | chr1_4:2108235-2108254 | None:intergenic | 35.0% | |
| TCAGGATGAAGATCCAAAAA+AGG | - | chr1_4:2108236-2108255 | None:intergenic | 35.0% | |
| ATGATTGAGAGTTCGATGAA+TGG | + | chr1_4:2108437-2108456 | Msa0143180:CDS | 35.0% | |
| TAAAGAGTCAATACAAGAGG+CGG | + | chr1_4:2108610-2108629 | Msa0143180:CDS | 35.0% | |
| TTGGTAGGAAAGGTAATCTA+TGG | + | chr1_4:2108839-2108858 | Msa0143180:intron | 35.0% | |
| CTTGAATACTACCATACCAA+AGG | - | chr1_4:2108949-2108968 | None:intergenic | 35.0% | |
| !!! | ACTGTTGGGTTTTTTGTTGA+GGG | + | chr1_4:2109149-2109168 | Msa0143180:intron | 35.0% |
| AAATGAGCTTCCAATTGAAG+TGG | - | chr1_4:2109447-2109466 | None:intergenic | 35.0% | |
| TTCAGAATTGGGAATAGACA+CGG | + | chr1_4:2109842-2109861 | Msa0143180:intron | 35.0% | |
| !!! | CTTATTTTTGTAGGCTGGAA+TGG | + | chr1_4:2109920-2109939 | Msa0143180:intron | 35.0% |
| TTTGTGATACCAGCAATAAC+CGG | - | chr1_4:2109972-2109991 | None:intergenic | 35.0% | |
| TCAATGGGTATACTAACTGT+TGG | + | chr1_4:2109993-2110012 | Msa0143180:CDS | 35.0% | |
| GGTATCAACATTGTCTCTTA+AGG | - | chr1_4:2110087-2110106 | None:intergenic | 35.0% | |
| ATTGAATGCTTCAGTTACAG+GGG | - | chr1_4:2110159-2110178 | None:intergenic | 35.0% | |
| GATTGAATGCTTCAGTTACA+GGG | - | chr1_4:2110160-2110179 | None:intergenic | 35.0% | |
| AGATTGAATGCTTCAGTTAC+AGG | - | chr1_4:2110161-2110180 | None:intergenic | 35.0% | |
| ! | TGTAACTGAAGCATTCAATC+TGG | + | chr1_4:2110160-2110179 | Msa0143180:CDS | 35.0% |
| TAAACAAAGCAACAAAAGGG+AGG | - | chr1_4:2110273-2110292 | None:intergenic | 35.0% | |
| !! | AGCCATTATAGCTCTAACAT+CGG | - | chr1_4:2110647-2110666 | None:intergenic | 35.0% |
| TAATGCAGGTTCTTCACTTA+TGG | + | chr1_4:2110666-2110685 | Msa0143180:CDS | 35.0% | |
| AATGCAGGTTCTTCACTTAT+GGG | + | chr1_4:2110667-2110686 | Msa0143180:CDS | 35.0% | |
| TATGCATGCAAACTGCTATT+GGG | + | chr1_4:2110708-2110727 | Msa0143180:intron | 35.0% | |
| TTTGGGTCAAATAGAAGATC+TGG | - | chr1_4:2110755-2110774 | None:intergenic | 35.0% | |
| GTATTATGTAAGCGAACTGT+AGG | - | chr1_4:2110792-2110811 | None:intergenic | 35.0% | |
| !!! | TACAGCCAAAGTTGTTTTAG+AGG | + | chr1_4:2110907-2110926 | Msa0143180:intron | 35.0% |
| !! | GCTATCCTCTAAAACAACTT+TGG | - | chr1_4:2110915-2110934 | None:intergenic | 35.0% |
| !!! | AAGTTGTTTTAGAGGATAGC+TGG | + | chr1_4:2110915-2110934 | Msa0143180:intron | 35.0% |
| CATGCACACTTCAAAATTCA+TGG | + | chr1_4:2111016-2111035 | Msa0143180:intron | 35.0% | |
| GAGCATATTATTATGGTCCA+TGG | + | chr1_4:2111165-2111184 | Msa0143180:intron | 35.0% | |
| TTTGTATTGAAGGGAAAACG+AGG | + | chr1_4:2111230-2111249 | Msa0143180:intron | 35.0% | |
| TTGTATTGAAGGGAAAACGA+GGG | + | chr1_4:2111231-2111250 | Msa0143180:intron | 35.0% | |
| TATGTTCCATACAATTCCAG+TGG | - | chr1_4:2111317-2111336 | None:intergenic | 35.0% | |
| GGAATTGTATGGAACATAAC+TGG | + | chr1_4:2111319-2111338 | Msa0143180:CDS | 35.0% | |
| ATTGTATGGAACATAACTGG+TGG | + | chr1_4:2111322-2111341 | Msa0143180:CDS | 35.0% | |
| ATAAATCTGTAAGGGTCAGA+GGG | - | chr1_4:2111382-2111401 | None:intergenic | 35.0% | |
| TAATTCGCATGCTGTTGTAA+GGG | - | chr1_4:2111577-2111596 | None:intergenic | 35.0% | |
| TTACTTGGAAACAAACACAC+TGG | + | chr1_4:2111864-2111883 | Msa0143180:intron | 35.0% | |
| !!! | AACTTGAGTTTTGAAGTGGA+TGG | + | chr1_4:2111981-2112000 | Msa0143180:intron | 35.0% |
| ! | TGGTTGTTTAAAGCTTGCTT+TGG | + | chr1_4:2112001-2112020 | Msa0143180:intron | 35.0% |
| GATGGTCCTTTATAATGTAC+AGG | + | chr1_4:2112137-2112156 | Msa0143180:intron | 35.0% | |
| GTAATAGATCCATCACTTAG+TGG | + | chr1_4:2112225-2112244 | Msa0143180:CDS | 35.0% | |
| AATGTTGCCCAATTCATTTC+AGG | - | chr1_4:2112336-2112355 | None:intergenic | 35.0% | |
| GCAGAAAATCTACTCTTTCT+TGG | - | chr1_4:2112375-2112394 | None:intergenic | 35.0% | |
| ! | TGTCAATGAAATCTAGCTTC+TGG | + | chr1_4:2112461-2112480 | Msa0143180:intron | 35.0% |
| ATTTAAACAAACCTGACGAG+AGG | - | chr1_4:2112555-2112574 | None:intergenic | 35.0% | |
| CTTCTATTCCGTAACAATAG+AGG | - | chr1_4:2112590-2112609 | None:intergenic | 35.0% | |
| CTCTATTGTTACGGAATAGA+AGG | + | chr1_4:2112588-2112607 | Msa0143180:intron | 35.0% | |
| !! | AACAATGTTCTCTAGAACGA+AGG | + | chr1_4:2112724-2112743 | Msa0143180:intron | 35.0% |
| TTATAGGGACCAAAAGTTGA+AGG | - | chr1_4:2112828-2112847 | None:intergenic | 35.0% | |
| AATGTGTGACCATATATGGT+AGG | + | chr1_4:2113288-2113307 | Msa0143180:intron | 35.0% | |
| ! | GAGCATAACATTGATTGCTA+CGG | + | chr1_4:2113467-2113486 | Msa0143180:CDS | 35.0% |
| ! | AGCATAACATTGATTGCTAC+GGG | + | chr1_4:2113468-2113487 | Msa0143180:CDS | 35.0% |
| TATGGGTATGACATCATAGA+GGG | - | chr1_4:2113560-2113579 | None:intergenic | 35.0% | |
| TTATGGGTATGACATCATAG+AGG | - | chr1_4:2113561-2113580 | None:intergenic | 35.0% | |
| TGATGTCATACCCATAATTG+TGG | + | chr1_4:2113564-2113583 | Msa0143180:intron | 35.0% | |
| ! | GTGGTTTTTGTCAAAAATGC+AGG | + | chr1_4:2113583-2113602 | Msa0143180:intron | 35.0% |
| CCGGAATTCTTAAAGAAGAA+AGG | + | chr1_4:2113683-2113702 | Msa0143180:CDS | 35.0% | |
| !! | GGAAAAGAGTATTAAGCTCT+TGG | - | chr1_4:2113722-2113741 | None:intergenic | 35.0% |
| CAAGGAATTAAAGAAGTTGG+GGG | - | chr1_4:2113743-2113762 | None:intergenic | 35.0% | |
| TGCAGTGGTAAAGAAATACA+AGG | - | chr1_4:2113761-2113780 | None:intergenic | 35.0% | |
| TACCACTGCATCAATATTAG+GGG | + | chr1_4:2113771-2113790 | Msa0143180:three_prime_UTR | 35.0% | |
| TAGGGGTAGAGTTAAACATT+TGG | + | chr1_4:2113788-2113807 | Msa0143180:three_prime_UTR | 35.0% | |
| TTGCTATAAAGGGCAAAAAC+GGG | - | chr1_4:2113826-2113845 | None:intergenic | 35.0% | |
| ! | TGGAAAGTTCTTAGCTTTCA+TGG | - | chr1_4:2113866-2113885 | None:intergenic | 35.0% |
| ! | TTCCAAACTTGTGTGTTTTG+AGG | + | chr1_4:2113881-2113900 | Msa0143180:three_prime_UTR | 35.0% |
| AGAAAATACCAGTAATGGTC+AGG | + | chr1_4:2113947-2113966 | Msa0143180:three_prime_UTR | 35.0% | |
| GAAAATACCAGTAATGGTCA+GGG | + | chr1_4:2113948-2113967 | Msa0143180:three_prime_UTR | 35.0% | |
| ! | CTTCCTCGAGTATGAAATTT+TGG | + | chr1_4:2114044-2114063 | Msa0143180:three_prime_UTR | 35.0% |
| TGAAGGAAAACGGTGATTGA+TGG | - | chr1_4:2107592-2107611 | None:intergenic | 40.0% | |
| AGTGAGTGAGTGAAGGAAAA+CGG | - | chr1_4:2107602-2107621 | None:intergenic | 40.0% | |
| TCATCTTCAATCCATTCCTC+AGG | + | chr1_4:2107658-2107677 | Msa0143180:five_prime_UTR | 40.0% | |
| GAAGCGTAATGAGAATTGAG+AGG | - | chr1_4:2107693-2107712 | None:intergenic | 40.0% | |
| CAAAGTGTGGAAGATGCAAT+TGG | - | chr1_4:2107916-2107935 | None:intergenic | 40.0% | |
| CGAATTCCAGAAATTCAGCA+GGG | + | chr1_4:2108021-2108040 | Msa0143180:CDS | 40.0% | |
| GAATTCCAGAAATTCAGCAG+GGG | + | chr1_4:2108022-2108041 | Msa0143180:CDS | 40.0% | |
| GGTGTTAACAACAGAAAGTG+TGG | + | chr1_4:2108140-2108159 | Msa0143180:CDS | 40.0% | |
| ! | TTGTTTCAAGTGAAGTCGAC+AGG | + | chr1_4:2108164-2108183 | Msa0143180:CDS | 40.0% |
| ! | TGTTTCAAGTGAAGTCGACA+GGG | + | chr1_4:2108165-2108184 | Msa0143180:CDS | 40.0% |
| TTACCAAATTCGCACAGTGT+TGG | + | chr1_4:2108188-2108207 | Msa0143180:CDS | 40.0% | |
| ! | GGGTCTTTGCTATGATGATA+AGG | - | chr1_4:2108215-2108234 | None:intergenic | 40.0% |
| ATTTCGATGCTTAGAGGTGA+AGG | + | chr1_4:2108257-2108276 | Msa0143180:CDS | 40.0% | |
| ATTAAGGTTATTGGTGTGGG+TGG | + | chr1_4:2108389-2108408 | Msa0143180:CDS | 40.0% | |
| TCAATACAAGAGGCGGTTTA+TGG | + | chr1_4:2108617-2108636 | Msa0143180:CDS | 40.0% | |
| CAACCACTTTCCTTCAAACA+TGG | + | chr1_4:2108669-2108688 | Msa0143180:intron | 40.0% | |
| TGTAGAACAGCCATGTTTGA+AGG | - | chr1_4:2108682-2108701 | None:intergenic | 40.0% | |
| ! | GTCTACACATGGTAATGTTC+AGG | - | chr1_4:2108736-2108755 | None:intergenic | 40.0% |
| GTAATCTATGGTGTAGTGTG+AGG | + | chr1_4:2108851-2108870 | Msa0143180:intron | 40.0% | |
| TAGGCCTCAATATTCCACAA+AGG | + | chr1_4:2108879-2108898 | Msa0143180:intron | 40.0% | |
| AGGCCTCAATATTCCACAAA+GGG | + | chr1_4:2108880-2108899 | Msa0143180:intron | 40.0% | |
| CAACCCTTTGTGGAATATTG+AGG | - | chr1_4:2108886-2108905 | None:intergenic | 40.0% | |
| TCCACAAAGGGTTGTCTATT+TGG | + | chr1_4:2108892-2108911 | Msa0143180:intron | 40.0% | |
| ! | TTTTCTGCATGCCTTTGGTA+TGG | + | chr1_4:2108935-2108954 | Msa0143180:intron | 40.0% |
| !!! | GACTGTTGGGTTTTTTGTTG+AGG | + | chr1_4:2109148-2109167 | Msa0143180:intron | 40.0% |
| !!! | CTGTTGGGTTTTTTGTTGAG+GGG | + | chr1_4:2109150-2109169 | Msa0143180:intron | 40.0% |
| !!! | TGTTGGGTTTTTTGTTGAGG+GGG | + | chr1_4:2109151-2109170 | Msa0143180:intron | 40.0% |
| TGTTGAGGGGGGTAATTAAT+AGG | + | chr1_4:2109163-2109182 | Msa0143180:intron | 40.0% | |
| GTTGAGGGGGGTAATTAATA+GGG | + | chr1_4:2109164-2109183 | Msa0143180:intron | 40.0% | |
| TTGAGGGGGGTAATTAATAG+GGG | + | chr1_4:2109165-2109184 | Msa0143180:intron | 40.0% | |
| TGCTGGTATCACAAAGTCAA+TGG | + | chr1_4:2109977-2109996 | Msa0143180:CDS | 40.0% | |
| GCTGGTATCACAAAGTCAAT+GGG | + | chr1_4:2109978-2109997 | Msa0143180:CDS | 40.0% | |
| GCAGTAAGCAACTTGTCATT+TGG | - | chr1_4:2110122-2110141 | None:intergenic | 40.0% | |
| TCAACAACCAAATGTGGATC+CGG | - | chr1_4:2110393-2110412 | None:intergenic | 40.0% | |
| !! | ACCTTAAGCTTTGAACCGTA+CGG | - | chr1_4:2110547-2110566 | None:intergenic | 40.0% |
| TGCCGATGTTAGAGCTATAA+TGG | + | chr1_4:2110642-2110661 | Msa0143180:CDS | 40.0% | |
| AGAGCTATAATGGCTAATGC+AGG | + | chr1_4:2110652-2110671 | Msa0143180:CDS | 40.0% | |
| ATGCAGGTTCTTCACTTATG+GGG | + | chr1_4:2110668-2110687 | Msa0143180:CDS | 40.0% | |
| GTATGCATGCAAACTGCTAT+TGG | + | chr1_4:2110707-2110726 | Msa0143180:intron | 40.0% | |
| ATGCATGCAAACTGCTATTG+GGG | + | chr1_4:2110709-2110728 | Msa0143180:intron | 40.0% | |
| CAAATAGAAGATCTGGACTC+AGG | - | chr1_4:2110748-2110767 | None:intergenic | 40.0% | |
| ! | CATCAGTTCTGACTAAGCAA+GGG | - | chr1_4:2111146-2111165 | None:intergenic | 40.0% |
| ! | TCATCAGTTCTGACTAAGCA+AGG | - | chr1_4:2111147-2111166 | None:intergenic | 40.0% |
| CAATATCTAGTAAGGGTGAC+TGG | - | chr1_4:2111282-2111301 | None:intergenic | 40.0% | |
| CAGTCACCCTTACTAGATAT+TGG | + | chr1_4:2111280-2111299 | Msa0143180:CDS | 40.0% | |
| ! | AAGTGATCTGACCTTGTTTG+AGG | + | chr1_4:2111345-2111364 | Msa0143180:CDS | 40.0% |
| GTAGCTAACTACCTCAAACA+AGG | - | chr1_4:2111359-2111378 | None:intergenic | 40.0% | |
| TAAATCTGTAAGGGTCAGAG+GGG | - | chr1_4:2111381-2111400 | None:intergenic | 40.0% | |
| GATAAATCTGTAAGGGTCAG+AGG | - | chr1_4:2111383-2111402 | None:intergenic | 40.0% | |
| AATTCGCATGCTGTTGTAAG+GGG | - | chr1_4:2111576-2111595 | None:intergenic | 40.0% | |
| GTAATTCGCATGCTGTTGTA+AGG | - | chr1_4:2111578-2111597 | None:intergenic | 40.0% | |
| !! | AGGGGCATTTCGAGAATTAT+AGG | + | chr1_4:2111630-2111649 | Msa0143180:intron | 40.0% |
| !!! | TTTTAACTGACTTGGTCTCC+TGG | + | chr1_4:2111769-2111788 | Msa0143180:intron | 40.0% |
| CTGGCTGAAAACGATATTAC+AGG | - | chr1_4:2111815-2111834 | None:intergenic | 40.0% | |
| AAAGAAAATACATCCCTGCC+TGG | - | chr1_4:2111838-2111857 | None:intergenic | 40.0% | |
| GTCGTATATAACTTCTGCTG+CGG | - | chr1_4:2112169-2112188 | None:intergenic | 40.0% | |
| ! | AATGAAATCTAGCTTCTGGC+TGG | + | chr1_4:2112465-2112484 | Msa0143180:intron | 40.0% |
| CGCAAACACCTCTATTGTTA+CGG | + | chr1_4:2112579-2112598 | Msa0143180:intron | 40.0% | |
| ! | AAGGGAAGTGTGTGTAATTG+AGG | + | chr1_4:2112607-2112626 | Msa0143180:intron | 40.0% |
| ! | AGGGAAGTGTGTGTAATTGA+GGG | + | chr1_4:2112608-2112627 | Msa0143180:intron | 40.0% |
| AGGGAATGTGTGACCATATA+TGG | + | chr1_4:2113284-2113303 | Msa0143180:intron | 40.0% | |
| CTGATGTGAACCATGTCATT+TGG | + | chr1_4:2113432-2113451 | Msa0143180:intron | 40.0% | |
| ATGGGTATGACATCATAGAG+GGG | - | chr1_4:2113559-2113578 | None:intergenic | 40.0% | |
| CAAACTACCATCAGTGAAAG+TGG | - | chr1_4:2113654-2113673 | None:intergenic | 40.0% | |
| CACTTTCACTGATGGTAGTT+TGG | + | chr1_4:2113652-2113671 | Msa0143180:CDS | 40.0% | |
| TACCCCTAATATTGATGCAG+TGG | - | chr1_4:2113776-2113795 | None:intergenic | 40.0% | |
| ! | CTTAGCTTTCATGGACAACA+AGG | - | chr1_4:2113857-2113876 | None:intergenic | 40.0% |
| AGCCTCAAAACACACAAGTT+TGG | - | chr1_4:2113886-2113905 | None:intergenic | 40.0% | |
| ACCTTCTTCAAGTAAGCTAC+TGG | + | chr1_4:2113990-2114009 | Msa0143180:three_prime_UTR | 40.0% | |
| ACCAGTAGCTTACTTGAAGA+AGG | - | chr1_4:2113994-2114013 | None:intergenic | 40.0% | |
| CCACCAAAATTTCATACTCG+AGG | - | chr1_4:2114050-2114069 | None:intergenic | 40.0% | |
| ! | CCTCGAGTATGAAATTTTGG+TGG | + | chr1_4:2114047-2114066 | Msa0143180:three_prime_UTR | 40.0% |
| !! | AACGGTGATTGATGGTGGAA+TGG | - | chr1_4:2107584-2107603 | None:intergenic | 45.0% |
| AGGAAAACGGTGATTGATGG+TGG | - | chr1_4:2107589-2107608 | None:intergenic | 45.0% | |
| GGAAGAAAGAACCTGAGGAA+TGG | - | chr1_4:2107672-2107691 | None:intergenic | 45.0% | |
| TGAGAGGAAGAAAGAACCTG+AGG | - | chr1_4:2107677-2107696 | None:intergenic | 45.0% | |
| !! | GCTGAATTTCTGGAATTCGC+AGG | - | chr1_4:2108020-2108039 | None:intergenic | 45.0% |
| GCGAATTCCAGAAATTCAGC+AGG | + | chr1_4:2108020-2108039 | Msa0143180:CDS | 45.0% | |
| !! | CCTCTAAGCATCGAAATCTC+AGG | - | chr1_4:2108254-2108273 | None:intergenic | 45.0% |
| CCTGAGATTTCGATGCTTAG+AGG | + | chr1_4:2108251-2108270 | Msa0143180:CDS | 45.0% | |
| CTTAGAGGTGAAGGAAGTAG+TGG | + | chr1_4:2108266-2108285 | Msa0143180:CDS | 45.0% | |
| TGAGAGTTCGATGAATGGTG+TGG | + | chr1_4:2108442-2108461 | Msa0143180:CDS | 45.0% | |
| ! | CGATGAATGGTGTGGAGTTT+TGG | + | chr1_4:2108450-2108469 | Msa0143180:CDS | 45.0% |
| ! | AACCGGTTCTCAGAATTGAC+AGG | - | chr1_4:2108512-2108531 | None:intergenic | 45.0% |
| CGTGTAAGCTCTTGACCAAT+TGG | - | chr1_4:2108536-2108555 | None:intergenic | 45.0% | |
| ATTGGTCAAGAGCTTACACG+AGG | + | chr1_4:2108536-2108555 | Msa0143180:CDS | 45.0% | |
| GCAGCATTCATACCAATCTC+CGG | - | chr1_4:2108581-2108600 | None:intergenic | 45.0% | |
| CAGCCATGTTTGAAGGAAAG+TGG | - | chr1_4:2108675-2108694 | None:intergenic | 45.0% | |
| GGTGTAGTGTGAGGAGAAAT+AGG | + | chr1_4:2108860-2108879 | Msa0143180:intron | 45.0% | |
| GCCAAATAGACAACCCTTTG+TGG | - | chr1_4:2108896-2108915 | None:intergenic | 45.0% | |
| AAGGCATGCAGAAAAGAGCA+CGG | - | chr1_4:2108930-2108949 | None:intergenic | 45.0% | |
| ! | TGCTCTTTTCTGCATGCCTT+TGG | + | chr1_4:2108930-2108949 | Msa0143180:intron | 45.0% |
| !!! | GTTGGGTTTTTTGTTGAGGG+GGG | + | chr1_4:2109152-2109171 | Msa0143180:intron | 45.0% |
| TGAGGGGGGTAATTAATAGG+GGG | + | chr1_4:2109166-2109185 | Msa0143180:intron | 45.0% | |
| TGCATACATAAGCATGTGCC+CGG | - | chr1_4:2109281-2109300 | None:intergenic | 45.0% | |
| ! | TTTTTGTAGGCTGGAATGGG+TGG | + | chr1_4:2109924-2109943 | Msa0143180:intron | 45.0% |
| ACAACCCCTTTCTCGTTTGA+AGG | + | chr1_4:2110023-2110042 | Msa0143180:CDS | 45.0% | |
| GCTGATGATATTCTGCGACA+AGG | + | chr1_4:2110182-2110201 | Msa0143180:CDS | 45.0% | |
| AACAACCAAATGTGGATCCG+GGG | - | chr1_4:2110391-2110410 | None:intergenic | 45.0% | |
| CAACAACCAAATGTGGATCC+GGG | - | chr1_4:2110392-2110411 | None:intergenic | 45.0% | |
| !! | CGTACGGGGAAAGTATTATC+GGG | - | chr1_4:2110531-2110550 | None:intergenic | 45.0% |
| !! | CCGTACGGGGAAAGTATTAT+CGG | - | chr1_4:2110532-2110551 | None:intergenic | 45.0% |
| CCGATAATACTTTCCCCGTA+CGG | + | chr1_4:2110529-2110548 | Msa0143180:intron | 45.0% | |
| !! | CTTAAGCTTTGAACCGTACG+GGG | - | chr1_4:2110545-2110564 | None:intergenic | 45.0% |
| !! | CCTTAAGCTTTGAACCGTAC+GGG | - | chr1_4:2110546-2110565 | None:intergenic | 45.0% |
| TTAAATGCAGATACCCGGGT+TGG | + | chr1_4:2110606-2110625 | Msa0143180:intron | 45.0% | |
| AAAGTCGACATTCACCAACC+CGG | - | chr1_4:2110623-2110642 | None:intergenic | 45.0% | |
| GGTTCTTCACTTATGGGGAT+AGG | + | chr1_4:2110673-2110692 | Msa0143180:CDS | 45.0% | |
| GTGTGCATGTCTGTAACTGA+AGG | + | chr1_4:2110880-2110899 | Msa0143180:intron | 45.0% | |
| ! | TGGAGAAGCACACATGTTGA+TGG | + | chr1_4:2111036-2111055 | Msa0143180:intron | 45.0% |
| CATCTAAGGATCATGGGAAG+TGG | + | chr1_4:2111513-2111532 | Msa0143180:intron | 45.0% | |
| ATTCGCATGCTGTTGTAAGG+GGG | - | chr1_4:2111575-2111594 | None:intergenic | 45.0% | |
| ! | AATATCGTTTTCAGCCAGCC+AGG | + | chr1_4:2111817-2111836 | Msa0143180:intron | 45.0% |
| ! | TTAACTGGACTAGAGGACAG+AGG | - | chr1_4:2111921-2111940 | None:intergenic | 45.0% |
| AATTAGCAGTGGGGTCTACA+AGG | - | chr1_4:2112191-2112210 | None:intergenic | 45.0% | |
| AGATCCATCACTTAGTGGTC+AGG | + | chr1_4:2112230-2112249 | Msa0143180:CDS | 45.0% | |
| CTTACCTGACCACTAAGTGA+TGG | - | chr1_4:2112237-2112256 | None:intergenic | 45.0% | |
| TGAATTGGGCAACATTACCC+TGG | + | chr1_4:2112340-2112359 | Msa0143180:intron | 45.0% | |
| TTTCTTGGCACACTACACCA+GGG | - | chr1_4:2112360-2112379 | None:intergenic | 45.0% | |
| CACAACAGAAAGAGATGACC+CGG | - | chr1_4:2112434-2112453 | None:intergenic | 45.0% | |
| AAACAAACCTGACGAGAGGT+GGG | - | chr1_4:2112551-2112570 | None:intergenic | 45.0% | |
| TAAACAAACCTGACGAGAGG+TGG | - | chr1_4:2112552-2112571 | None:intergenic | 45.0% | |
| GGGTTAAGACATACCTGTAC+GGG | - | chr1_4:2113525-2113544 | None:intergenic | 45.0% | |
| GGGGTTAAGACATACCTGTA+CGG | - | chr1_4:2113526-2113545 | None:intergenic | 45.0% | |
| TGGGTATGACATCATAGAGG+GGG | - | chr1_4:2113558-2113577 | None:intergenic | 45.0% | |
| ! | ATCTCCTTGTGTGAGTTGAC+TGG | - | chr1_4:2113609-2113628 | None:intergenic | 45.0% |
| AAGGAGATACCGTTGTCAGT+CGG | + | chr1_4:2113621-2113640 | Msa0143180:CDS | 45.0% | |
| CGATCTTCCACTTTCACTGA+TGG | + | chr1_4:2113644-2113663 | Msa0143180:CDS | 45.0% | |
| TGGTAGTTTGGTTGAGATCC+CGG | + | chr1_4:2113664-2113683 | Msa0143180:CDS | 45.0% | |
| TAACAAGCCCTGACCATTAC+TGG | - | chr1_4:2113958-2113977 | None:intergenic | 45.0% | |
| !!! | AATTTTTTTCATATTAATTT+AGG | + | chr1_4:2108788-2108807 | Msa0143180:intron | 5.0% |
| !!! | ATGAATTTTTATATTTTTTA+CGG | - | chr1_4:2113002-2113021 | None:intergenic | 5.0% |
| !!! | AAAAAATTCTAAATTTTTTT+TGG | + | chr1_4:2113042-2113061 | Msa0143180:intron | 5.0% |
| GTGAGTGAGTGAGTGAGTGA+AGG | - | chr1_4:2107609-2107628 | None:intergenic | 50.0% | |
| GGAATTCGCAGGTGCAAAAC+AGG | - | chr1_4:2108009-2108028 | None:intergenic | 50.0% | |
| AAGCACCCCTGCTGAATTTC+TGG | - | chr1_4:2108030-2108049 | None:intergenic | 50.0% | |
| GGACCAACACTGTGCGAATT+TGG | - | chr1_4:2108194-2108213 | None:intergenic | 50.0% | |
| CGTCCGAGAAAGGATATGTC+CGG | + | chr1_4:2108305-2108324 | Msa0143180:CDS | 50.0% | |
| CCACCGGACATATCCTTTCT+CGG | - | chr1_4:2108311-2108330 | None:intergenic | 50.0% | |
| AAGGTTATTGGTGTGGGTGG+TGG | + | chr1_4:2108392-2108411 | Msa0143180:CDS | 50.0% | |
| ! | TTATTGGTGTGGGTGGTGGT+GGG | + | chr1_4:2108396-2108415 | Msa0143180:CDS | 50.0% |
| ! | CGCCTGTCAATTCTGAGAAC+CGG | + | chr1_4:2108507-2108526 | Msa0143180:CDS | 50.0% |
| TCTGAGAACCGGTTGCCAAT+TGG | + | chr1_4:2108518-2108537 | Msa0143180:CDS | 50.0% | |
| GCTCTTGACCAATTGGCAAC+CGG | - | chr1_4:2108529-2108548 | None:intergenic | 50.0% | |
| CAAGAGCTTACACGAGGTCT+TGG | + | chr1_4:2108542-2108561 | Msa0143180:CDS | 50.0% | |
| !! | TCTTGGTGCTGGTGGTAATC+CGG | + | chr1_4:2108559-2108578 | Msa0143180:CDS | 50.0% |
| GGCGGTTTATGGAGCTGATA+TGG | + | chr1_4:2108628-2108647 | Msa0143180:CDS | 50.0% | |
| GCATACATAAGCATGTGCCC+GGG | - | chr1_4:2109280-2109299 | None:intergenic | 50.0% | |
| CGTATGGGGACTGATGTACA+AGG | - | chr1_4:2109406-2109425 | None:intergenic | 50.0% | |
| ACATCAGTCCCCATACGACT+AGG | + | chr1_4:2109409-2109428 | Msa0143180:intron | 50.0% | |
| TGCCAGCAACCTAGTCGTAT+GGG | - | chr1_4:2109421-2109440 | None:intergenic | 50.0% | |
| ATGCCAGCAACCTAGTCGTA+TGG | - | chr1_4:2109422-2109441 | None:intergenic | 50.0% | |
| GCTGGCATCTCCACTTCAAT+TGG | + | chr1_4:2109434-2109453 | Msa0143180:intron | 50.0% | |
| CCGTCCTTCAAACGAGAAAG+GGG | - | chr1_4:2110030-2110049 | None:intergenic | 50.0% | |
| CCCCTTTCTCGTTTGAAGGA+CGG | + | chr1_4:2110027-2110046 | Msa0143180:CDS | 50.0% | |
| GCCGTCCTTCAAACGAGAAA+GGG | - | chr1_4:2110031-2110050 | None:intergenic | 50.0% | |
| CTTTCTCGTTTGAAGGACGG+CGG | + | chr1_4:2110030-2110049 | Msa0143180:CDS | 50.0% | |
| AGGGCAGTTCAAGCACAAGA+AGG | + | chr1_4:2110053-2110072 | Msa0143180:CDS | 50.0% | |
| ! | ATTCTGCGACAAGGTGTTCG+TGG | + | chr1_4:2110191-2110210 | Msa0143180:CDS | 50.0% |
| TTGACATATCCGGTAGTCCC+CGG | + | chr1_4:2110371-2110390 | Msa0143180:intron | 50.0% | |
| CCCGTACGGTTCAAAGCTTA+AGG | + | chr1_4:2110543-2110562 | Msa0143180:intron | 50.0% | |
| AAGTCGACATTCACCAACCC+GGG | - | chr1_4:2110622-2110641 | None:intergenic | 50.0% | |
| ATGGGGATAGGAACTGCAAC+TGG | + | chr1_4:2110685-2110704 | Msa0143180:CDS | 50.0% | |
| ATTGGTATAGAGAGGGCCAC+TGG | + | chr1_4:2111298-2111317 | Msa0143180:CDS | 50.0% | |
| AGAGGGCCACTGGAATTGTA+TGG | + | chr1_4:2111308-2111327 | Msa0143180:CDS | 50.0% | |
| AAGGATCATGGGAAGTGGTC+AGG | + | chr1_4:2111518-2111537 | Msa0143180:intron | 50.0% | |
| TTCGCATGCTGTTGTAAGGG+GGG | - | chr1_4:2111574-2111593 | None:intergenic | 50.0% | |
| AAAATACATCCCTGCCTGGC+TGG | - | chr1_4:2111834-2111853 | None:intergenic | 50.0% | |
| CTTTCTTGGCACACTACACC+AGG | - | chr1_4:2112361-2112380 | None:intergenic | 50.0% | |
| TACGGGATTCAAGCGTCAAG+AGG | + | chr1_4:2113485-2113504 | Msa0143180:CDS | 50.0% | |
| ATGACATCATAGAGGGGGGA+GGG | - | chr1_4:2113553-2113572 | None:intergenic | 50.0% | |
| TATGACATCATAGAGGGGGG+AGG | - | chr1_4:2113554-2113573 | None:intergenic | 50.0% | |
| GGGTATGACATCATAGAGGG+GGG | - | chr1_4:2113557-2113576 | None:intergenic | 50.0% | |
| !! | GCAGGGGTGCTTGCTGTTAA+TGG | + | chr1_4:2108038-2108057 | Msa0143180:CDS | 55.0% |
| !! | GGGGTGCTTGCTGTTAATGG+AGG | + | chr1_4:2108041-2108060 | Msa0143180:CDS | 55.0% |
| CAACTCTACGCGTCCGAGAA+AGG | + | chr1_4:2108295-2108314 | Msa0143180:CDS | 55.0% | |
| CCGAGAAAGGATATGTCCGG+TGG | + | chr1_4:2108308-2108327 | Msa0143180:CDS | 55.0% | |
| GGATATGTCCGGTGGAGATG+TGG | + | chr1_4:2108316-2108335 | Msa0143180:CDS | 55.0% | |
| TGGAGATGTGGTCGAAGGGT+TGG | + | chr1_4:2108328-2108347 | Msa0143180:CDS | 55.0% | |
| ! | GTTATTGGTGTGGGTGGTGG+TGG | + | chr1_4:2108395-2108414 | Msa0143180:CDS | 55.0% |
| ! | CTTACACGAGGTCTTGGTGC+TGG | + | chr1_4:2108548-2108567 | Msa0143180:CDS | 55.0% |
| GCTGGTGGTAATCCGGAGAT+TGG | + | chr1_4:2108566-2108585 | Msa0143180:CDS | 55.0% | |
| TCCCCATACGACTAGGTTGC+TGG | + | chr1_4:2109416-2109435 | Msa0143180:intron | 55.0% | |
| GCCAGCAACCTAGTCGTATG+GGG | - | chr1_4:2109420-2109439 | None:intergenic | 55.0% | |
| TTGTAGGCTGGAATGGGTGG+AGG | + | chr1_4:2109927-2109946 | Msa0143180:intron | 55.0% | |
| CGCCGTCCTTCAAACGAGAA+AGG | - | chr1_4:2110032-2110051 | None:intergenic | 55.0% | |
| AATGTGGATCCGGGGACTAC+CGG | - | chr1_4:2110383-2110402 | None:intergenic | 55.0% | |
| GTAGTCCCCGGATCCACATT+TGG | + | chr1_4:2110383-2110402 | Msa0143180:intron | 55.0% | |
| TCGCATGCTGTTGTAAGGGG+GGG | - | chr1_4:2111573-2111592 | None:intergenic | 55.0% | |
| TATTGCACCCACCTCTCGTC+AGG | + | chr1_4:2112541-2112560 | Msa0143180:intron | 55.0% | |
| AAGTGAAGCGAGACCCGTAC+AGG | + | chr1_4:2113509-2113528 | Msa0143180:CDS | 55.0% | |
| TCATAGAGGGGGGAGGGTTA+GGG | - | chr1_4:2113547-2113566 | None:intergenic | 55.0% | |
| ATCATAGAGGGGGGAGGGTT+AGG | - | chr1_4:2113548-2113567 | None:intergenic | 55.0% | |
| CAGGCCAGTCAACTCACACA+AGG | + | chr1_4:2113602-2113621 | Msa0143180:intron | 55.0% | |
| ! | GGAAGATCGCCGACTGACAA+CGG | - | chr1_4:2113633-2113652 | None:intergenic | 55.0% |
| TCCGGTGGAGATGTGGTCGA+AGG | + | chr1_4:2108323-2108342 | Msa0143180:CDS | 60.0% | |
| CCCTTCGACCACATCTCCAC+CGG | - | chr1_4:2108327-2108346 | None:intergenic | 60.0% | |
| CCGGTGGAGATGTGGTCGAA+GGG | + | chr1_4:2108324-2108343 | Msa0143180:CDS | 60.0% | |
| !! | ACACGAGGTCTTGGTGCTGG+TGG | + | chr1_4:2108551-2108570 | Msa0143180:CDS | 60.0% |
| GCTGGAATGGGTGGAGGAAC+TGG | + | chr1_4:2109933-2109952 | Msa0143180:CDS | 60.0% | |
| ATGGGTGGAGGAACTGGCAC+TGG | + | chr1_4:2109939-2109958 | Msa0143180:CDS | 60.0% | |
| !! | AACTGGCACTGGTGCAGCTC+CGG | + | chr1_4:2109950-2109969 | Msa0143180:CDS | 60.0% |
| GGTGCAGCTCCGGTTATTGC+TGG | + | chr1_4:2109960-2109979 | Msa0143180:CDS | 60.0% | |
| TCTCGTTTGAAGGACGGCGG+AGG | + | chr1_4:2110033-2110052 | Msa0143180:CDS | 60.0% | |
| CTCGTTTGAAGGACGGCGGA+GGG | + | chr1_4:2110034-2110053 | Msa0143180:CDS | 60.0% | |
| CGCATGCTGTTGTAAGGGGG+GGG | - | chr1_4:2111572-2111591 | None:intergenic | 60.0% | |
| ! | TCGTTTTCAGCCAGCCAGGC+AGG | + | chr1_4:2111821-2111840 | Msa0143180:intron | 60.0% |
| ! | CGTTTTCAGCCAGCCAGGCA+GGG | + | chr1_4:2111822-2111841 | Msa0143180:intron | 60.0% |
| ATAGAGGGGGGAGGGTTAGG+GGG | - | chr1_4:2113545-2113564 | None:intergenic | 60.0% | |
| CATAGAGGGGGGAGGGTTAG+GGG | - | chr1_4:2113546-2113565 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 2107502 | 2114083 | 2107502 | ID=Msa0143180;Name=Msa0143180 |
| chr1_4 | mRNA | 2107502 | 2114083 | 2107502 | ID=Msa0143180-mRNA-1;Parent=Msa0143180;Name=Msa0143180-mRNA-1;_AED=0.10;_eAED=0.10;_QI=256|1|1|1|0.85|0.75|8|353|494 |
| chr1_4 | exon | 2107502 | 2107679 | 2107502 | ID=Msa0143180-mRNA-1:exon:829;Parent=Msa0143180-mRNA-1 |
| chr1_4 | exon | 2107900 | 2108661 | 2107900 | ID=Msa0143180-mRNA-1:exon:830;Parent=Msa0143180-mRNA-1 |
| chr1_4 | exon | 2109933 | 2110232 | 2109933 | ID=Msa0143180-mRNA-1:exon:831;Parent=Msa0143180-mRNA-1 |
| chr1_4 | exon | 2110616 | 2110706 | 2110616 | ID=Msa0143180-mRNA-1:exon:832;Parent=Msa0143180-mRNA-1 |
| chr1_4 | exon | 2111242 | 2111366 | 2111242 | ID=Msa0143180-mRNA-1:exon:833;Parent=Msa0143180-mRNA-1 |
| chr1_4 | exon | 2112159 | 2112251 | 2112159 | ID=Msa0143180-mRNA-1:exon:834;Parent=Msa0143180-mRNA-1 |
| chr1_4 | exon | 2113465 | 2113530 | 2113465 | ID=Msa0143180-mRNA-1:exon:835;Parent=Msa0143180-mRNA-1 |
| chr1_4 | exon | 2113605 | 2114083 | 2113605 | ID=Msa0143180-mRNA-1:exon:836;Parent=Msa0143180-mRNA-1 |
| chr1_4 | five_prime_UTR | 2107502 | 2107679 | 2107502 | ID=Msa0143180-mRNA-1:five_prime_utr;Parent=Msa0143180-mRNA-1 |
| chr1_4 | five_prime_UTR | 2107900 | 2107977 | 2107900 | ID=Msa0143180-mRNA-1:five_prime_utr;Parent=Msa0143180-mRNA-1 |
| chr1_4 | CDS | 2107978 | 2108661 | 2107978 | ID=Msa0143180-mRNA-1:cds;Parent=Msa0143180-mRNA-1 |
| chr1_4 | CDS | 2109933 | 2110232 | 2109933 | ID=Msa0143180-mRNA-1:cds;Parent=Msa0143180-mRNA-1 |
| chr1_4 | CDS | 2110616 | 2110706 | 2110616 | ID=Msa0143180-mRNA-1:cds;Parent=Msa0143180-mRNA-1 |
| chr1_4 | CDS | 2111242 | 2111366 | 2111242 | ID=Msa0143180-mRNA-1:cds;Parent=Msa0143180-mRNA-1 |
| chr1_4 | CDS | 2112159 | 2112251 | 2112159 | ID=Msa0143180-mRNA-1:cds;Parent=Msa0143180-mRNA-1 |
| chr1_4 | CDS | 2113465 | 2113530 | 2113465 | ID=Msa0143180-mRNA-1:cds;Parent=Msa0143180-mRNA-1 |
| chr1_4 | CDS | 2113605 | 2113730 | 2113605 | ID=Msa0143180-mRNA-1:cds;Parent=Msa0143180-mRNA-1 |
| chr1_4 | three_prime_UTR | 2113731 | 2114083 | 2113731 | ID=Msa0143180-mRNA-1:three_prime_utr;Parent=Msa0143180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
