AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1127020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127020 MtrunA17_Chr7g0269231 97.308 260 4 1 1 257 1 260 0.0 517
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127020 AT1G02880.3 68.359 256 79 1 1 256 4 257 2.32e-132 375
Msa1127020 AT1G02880.2 68.359 256 79 1 1 256 1 254 4.49e-132 374
Msa1127020 AT2G44750.2 67.188 256 81 1 1 256 5 257 5.18e-130 369
Msa1127020 AT1G02880.6 66.794 262 79 2 1 256 4 263 1.22e-129 368
Msa1127020 AT2G44750.1 66.797 256 80 2 1 256 5 255 1.01e-127 363
Msa1127020 AT1G02880.5 73.889 180 47 0 77 256 8 187 5.75e-96 280
Msa1127020 AT1G02880.1 73.889 180 47 0 77 256 8 187 5.75e-96 280
Msa1127020 AT1G02880.4 72.941 170 46 0 87 256 1 170 2.38e-88 260

Find 89 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTTACTGTACAAATTA+TGG 0.096100 7_3:+78535400 Msa1127020:three_prime_UTR
ACCTCTGATTTATCAGTATT+TGG 0.123339 7_3:-78534140 None:intergenic
CTTCCATTATTATTGGTTAT+TGG 0.154032 7_3:-78535466 None:intergenic
TCCTGAACTTCCATTATTAT+TGG 0.161699 7_3:-78535473 None:intergenic
CCAAAGCAAAGGAGCGAATT+TGG 0.179692 7_3:-78531518 None:intergenic
ATGGGTCTTATTCCATTTAA+AGG 0.209884 7_3:+78535312 Msa1127020:three_prime_UTR
TTCCATTATTATTGGTTATT+GGG 0.226514 7_3:-78535465 None:intergenic
TTCCATGTCCATTAATTAGA+TGG 0.243974 7_3:+78535293 Msa1127020:three_prime_UTR
AAGGGAGTTATTCATTGATT+TGG 0.251535 7_3:+78535431 Msa1127020:three_prime_UTR
CCAAATTCGCTCCTTTGCTT+TGG 0.262944 7_3:+78531518 Msa1127020:CDS
CAAATTCGCTCCTTTGCTTT+GGG 0.270102 7_3:+78531519 Msa1127020:CDS
AAAAGGTTGTAGTGAGGTTT+TGG 0.270539 7_3:+78531353 Msa1127020:five_prime_UTR
AGTCTGATTCAGATCTTCTT+TGG 0.283649 7_3:+78535208 Msa1127020:CDS
AGCACATCAAATATTGTAAA+AGG 0.285187 7_3:+78535168 Msa1127020:CDS
AAGAAAGTCTGGCCTTTAAA+TGG 0.287584 7_3:-78535324 None:intergenic
AATAAGACCCATCTAATTAA+TGG 0.291612 7_3:-78535301 None:intergenic
ACCAATAATAATGGAAGTTC+AGG 0.301165 7_3:+78535472 Msa1127020:three_prime_UTR
ATTTATCAGTATTTGGTATA+AGG 0.310511 7_3:-78534133 None:intergenic
ATTAATGGACATGGAAGATA+TGG 0.317023 7_3:-78535286 None:intergenic
TCATTTACTGTACAAATTAT+GGG 0.320724 7_3:+78535401 Msa1127020:three_prime_UTR
CATTGTGGACTCGTTCCTAT+TGG 0.325599 7_3:+78534649 Msa1127020:CDS
AGGGAGTTATTCATTGATTT+GGG 0.339085 7_3:+78535432 Msa1127020:three_prime_UTR
TTCCCAATAACCAATAATAA+TGG 0.344674 7_3:+78535463 Msa1127020:three_prime_UTR
TCCTGTGGTTGTAGAACTTC+CGG 0.357660 7_3:-78534680 None:intergenic
CAAAGCAAAGGAGCGAATTT+GGG 0.363044 7_3:-78531517 None:intergenic
CAGCTATGCATTCTTGCTGT+TGG 0.376459 7_3:+78534466 Msa1127020:intron
GGGAGATTTGATCACGAGAT+TGG 0.378181 7_3:+78534499 Msa1127020:CDS
GAGGACACAGAGATGAGATT+TGG 0.378288 7_3:+78535135 Msa1127020:intron
ATGTCACCTTTGATTGCATC+AGG 0.379819 7_3:-78533798 None:intergenic
ATTCTTGCTGTTGGAGCACT+TGG 0.384460 7_3:+78534475 Msa1127020:CDS
ACGGAAGAAGAAGAAGTTTC+CGG 0.385489 7_3:-78531454 None:intergenic
ATTGTGGACTCGTTCCTATT+GGG 0.388599 7_3:+78534650 Msa1127020:CDS
TATTCGGCTTATTACATGAA+TGG 0.392673 7_3:-78535545 None:intergenic
CTTCCGGATGGCATCCCAAT+AGG 0.427717 7_3:-78534664 None:intergenic
CATATACGAGTTTGCGCTGA+TGG 0.437248 7_3:+78531647 Msa1127020:CDS
GTTGGTTTCGTACCTGTGTT+TGG 0.439797 7_3:-78531196 None:intergenic
CTTGCTGTTGGAGCACTTGG+TGG 0.445518 7_3:+78534478 Msa1127020:CDS
GTACGAACATGAGAAGGATT+TGG 0.446895 7_3:-78531716 None:intergenic
ATCTTATGCGAGTAATTCTT+CGG 0.450082 7_3:-78534598 None:intergenic
TACATGTTGCATACTGCACC+TGG 0.452863 7_3:+78535259 Msa1127020:three_prime_UTR
ACAAATTATGGGAGGGTGAA+AGG 0.460413 7_3:+78535412 Msa1127020:three_prime_UTR
GAAGAGAAGCATCAATCGTT+AGG 0.461340 7_3:+78531387 Msa1127020:five_prime_UTR
TGAGGCAATCATCAGATAGA+AGG 0.467880 7_3:-78534564 None:intergenic
AACAAATTTACAATTAGTAG+CGG 0.472580 7_3:+78531221 Msa1127020:five_prime_UTR
CAAATTATGGGAGGGTGAAA+GGG 0.475106 7_3:+78535413 Msa1127020:three_prime_UTR
AATTTCTATCAAGAAGCTCT+AGG 0.492838 7_3:+78535233 Msa1127020:CDS
AAGGTGACATGGATTCAATC+AGG 0.496191 7_3:+78533811 Msa1127020:CDS
AATTGACGAGTCTCAAGATC+AGG 0.499779 7_3:+78534070 Msa1127020:CDS
GTTCCTATTGGGATGCCATC+CGG 0.507989 7_3:+78534661 Msa1127020:CDS
TCCATGTCCATTAATTAGAT+GGG 0.518703 7_3:+78535294 Msa1127020:three_prime_UTR
TTCATTCAATCTTCTGTCGA+GGG 0.519105 7_3:+78534622 Msa1127020:CDS
GACACAGAGATGAGATTTGG+CGG 0.521420 7_3:+78535138 Msa1127020:CDS
ATCCTTCTCATGTTCGTACC+AGG 0.522349 7_3:+78531720 Msa1127020:CDS
CATGGAAGATATGGAAAGCC+AGG 0.523067 7_3:-78535277 None:intergenic
CATCAATCGTTAGGATAGGA+TGG 0.529835 7_3:+78531396 Msa1127020:exon
TTGCTGTTGGAGCACTTGGT+GGG 0.532035 7_3:+78534479 Msa1127020:CDS
CTTCATTCAATCTTCTGTCG+AGG 0.535339 7_3:+78534621 Msa1127020:CDS
ACAAATTTACAATTAGTAGC+GGG 0.545015 7_3:+78531222 Msa1127020:five_prime_UTR
GCTCCTTTGCTTTGGGACCA+CGG 0.545810 7_3:+78531526 Msa1127020:CDS
TCTTCGGAAGAAGTTGAATG+AGG 0.557423 7_3:-78534582 None:intergenic
TAGAAGGATAATGCGCGTGT+TGG 0.565349 7_3:-78534548 None:intergenic
GAAGCATCAATCGTTAGGAT+AGG 0.569437 7_3:+78531392 Msa1127020:five_prime_UTR
TCCGGAAGTTCTACAACCAC+AGG 0.570611 7_3:+78534679 Msa1127020:CDS
ACCCATCTAATTAATGGACA+TGG 0.570935 7_3:-78535295 None:intergenic
AATACTTACTGAGGTCCCAC+TGG 0.575667 7_3:-78534705 None:intergenic
CATTTCATCATACACACGGT+TGG 0.576112 7_3:-78531675 None:intergenic
TTTACTGTACAAATTATGGG+AGG 0.587647 7_3:+78535404 Msa1127020:three_prime_UTR
TGATGCAATCAAAGGTGACA+TGG 0.600849 7_3:+78533800 Msa1127020:CDS
ACTTGATTTCTATGCAAACC+TGG 0.601776 7_3:+78533842 Msa1127020:CDS
ACCAAATACTGATAAATCAG+AGG 0.604378 7_3:+78534139 Msa1127020:CDS
AAGAGCGTATGTCAGAGAAA+CGG 0.605988 7_3:-78531473 None:intergenic
AACATGAGAAGGATTTGGTG+AGG 0.613885 7_3:-78531711 None:intergenic
ATACCGTGGTCCCAAAGCAA+AGG 0.614254 7_3:-78531529 None:intergenic
ACATGAGAAGGATTTGGTGA+GGG 0.622492 7_3:-78531710 None:intergenic
TACAAGCCTGATGCAATCAA+AGG 0.623735 7_3:+78533792 Msa1127020:CDS
TACCTGGTACGAACATGAGA+AGG 0.628823 7_3:-78531722 None:intergenic
AGTAAAAGAAACATAAACAA+AGG 0.633072 7_3:-78535376 None:intergenic
ATACGAGTTTGCGCTGATGG+AGG 0.633325 7_3:+78531650 Msa1127020:CDS
TCTGTCGAGGGTCCACATTG+TGG 0.635034 7_3:+78534634 Msa1127020:CDS
GAGGTCCCACTGGAGTCCTG+TGG 0.635982 7_3:-78534695 None:intergenic
TTACTGTACAAATTATGGGA+GGG 0.636161 7_3:+78535405 Msa1127020:three_prime_UTR
CTTTATCATTGACCAAACAC+AGG 0.643382 7_3:+78531184 Msa1127020:five_prime_UTR
CTACAACCACAGGACTCCAG+TGG 0.662065 7_3:+78534689 Msa1127020:CDS
TACAACCACAGGACTCCAGT+GGG 0.664787 7_3:+78534690 Msa1127020:CDS
AACACATTTGTGTAAATCTG+TGG 0.677485 7_3:-78534096 None:intergenic
GTGGTTGTAGAACTTCCGGA+TGG 0.690304 7_3:-78534676 None:intergenic
GAGGCATTTCATCATACACA+CGG 0.695989 7_3:-78531679 None:intergenic
GAAGAAGAAGAAGTTTCCGG+TGG 0.697049 7_3:-78531451 None:intergenic
ATAGGAACGAGTCCACAATG+TGG 0.758602 7_3:-78534646 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATGTTAAAAAATAAG+AGG + chr7_3:78531292-78531311 Msa1127020:five_prime_UTR 10.0%
!! ATATCTTATAATATAAAAGA+GGG - chr7_3:78531588-78531607 None:intergenic 10.0%
!! TATATCTTATAATATAAAAG+AGG - chr7_3:78531589-78531608 None:intergenic 10.0%
!!! TAATTGTAAATTTGTTTTGT+TGG - chr7_3:78531217-78531236 None:intergenic 15.0%
!! ATAAATAAATAACGCAAAAA+AGG + chr7_3:78531336-78531355 Msa1127020:five_prime_UTR 15.0%
!! TATCTTATAATATAAAAGAG+GGG - chr7_3:78531587-78531606 None:intergenic 15.0%
!!! AAAAAATGATTATCATTTTG+TGG - chr7_3:78531886-78531905 None:intergenic 15.0%
!!! TTGTGTTAATTGTTTTATTT+AGG + chr7_3:78532128-78532147 Msa1127020:intron 15.0%
!!! TGTGTTAATTGTTTTATTTA+GGG + chr7_3:78532129-78532148 Msa1127020:intron 15.0%
!! AGTTACATATCTTTAATATT+TGG - chr7_3:78532645-78532664 None:intergenic 15.0%
!! TCTAGTATTAAATTTATTAG+TGG - chr7_3:78532898-78532917 None:intergenic 15.0%
!! TATTCATAATATGAAACAAA+AGG + chr7_3:78532979-78532998 Msa1127020:intron 15.0%
!! ATTCATAATATGAAACAAAA+GGG + chr7_3:78532980-78532999 Msa1127020:intron 15.0%
!!! GTTATTGTTTTACTATTTAT+AGG + chr7_3:78533051-78533070 Msa1127020:intron 15.0%
!! AGATAAAATGATTTATGTTT+GGG - chr7_3:78533511-78533530 None:intergenic 15.0%
!! AAGATAAAATGATTTATGTT+TGG - chr7_3:78533512-78533531 None:intergenic 15.0%
!! AAAACATAAAGATATAGATA+GGG - chr7_3:78533875-78533894 None:intergenic 15.0%
!! AAAAACATAAAGATATAGAT+AGG - chr7_3:78533876-78533895 None:intergenic 15.0%
!! AACAAATTTACAATTAGTAG+CGG + chr7_3:78531221-78531240 Msa1127020:five_prime_UTR 20.0%
!! ATATGTTAAAAAATAAGAGG+AGG + chr7_3:78531295-78531314 Msa1127020:five_prime_UTR 20.0%
!! ACTAATTAGGTATAACTATA+AGG + chr7_3:78531964-78531983 Msa1127020:intron 20.0%
!! TTTGTAAAAAATAGCAACTT+TGG - chr7_3:78532044-78532063 None:intergenic 20.0%
!!! GTGTTAATTGTTTTATTTAG+GGG + chr7_3:78532130-78532149 Msa1127020:intron 20.0%
!! TTTGAGTAAAATAGCAAAAA+TGG + chr7_3:78532263-78532282 Msa1127020:intron 20.0%
!!! AAAAATGGTGATGTTTAAAA+TGG + chr7_3:78532278-78532297 Msa1127020:intron 20.0%
!!! TCAAACTTAAGTAATTTTTC+TGG + chr7_3:78532541-78532560 Msa1127020:intron 20.0%
!! TTGTATATTTATGCTAATGA+TGG + chr7_3:78532619-78532638 Msa1127020:intron 20.0%
!!! GTATTTCTTTTTGAATAGTA+TGG - chr7_3:78532923-78532942 None:intergenic 20.0%
!! TTGTACTAGTTGTATATAAT+TGG - chr7_3:78533031-78533050 None:intergenic 20.0%
!!! TCTTTATACATTATTGCTTT+TGG + chr7_3:78533242-78533261 Msa1127020:intron 20.0%
!!! CTTTATACATTATTGCTTTT+GGG + chr7_3:78533243-78533262 Msa1127020:intron 20.0%
!!! AATTGATTTTGGTATGTTAA+GGG + chr7_3:78533378-78533397 Msa1127020:intron 20.0%
!! ATGCAAAATCAATTCTAATT+AGG - chr7_3:78533405-78533424 None:intergenic 20.0%
!! GATAAAATGATTTATGTTTG+GGG - chr7_3:78533510-78533529 None:intergenic 20.0%
!!! TGATTTTGCATAATTGATTT+TGG - chr7_3:78533549-78533568 None:intergenic 20.0%
!!! CAATTATGCAAAATCAATTT+TGG + chr7_3:78533553-78533572 Msa1127020:intron 20.0%
!! TGGAGGATTATAAATTATAA+TGG + chr7_3:78533612-78533631 Msa1127020:intron 20.0%
!! ATTTATCAGTATTTGGTATA+AGG - chr7_3:78534136-78534155 None:intergenic 20.0%
!!! CTTTATTATTGAATTTTGCA+AGG + chr7_3:78534183-78534202 Msa1127020:intron 20.0%
!! AAGAATAAAAATAATGCATC+TGG - chr7_3:78534811-78534830 None:intergenic 20.0%
!! AGTTTATTTAGTTACTCATA+AGG - chr7_3:78534885-78534904 None:intergenic 20.0%
!! AGTAAAAGAAACATAAACAA+AGG - chr7_3:78535379-78535398 None:intergenic 20.0%
!! TTCATTTACTGTACAAATTA+TGG + chr7_3:78535400-78535419 Msa1127020:three_prime_UTR 20.0%
!! TCATTTACTGTACAAATTAT+GGG + chr7_3:78535401-78535420 Msa1127020:three_prime_UTR 20.0%
!!! TTCCATTATTATTGGTTATT+GGG - chr7_3:78535468-78535487 None:intergenic 20.0%
! ACAAATTTACAATTAGTAGC+GGG + chr7_3:78531222-78531241 Msa1127020:five_prime_UTR 25.0%
! AGATGATTCATGTATGTTAT+TGG + chr7_3:78531609-78531628 Msa1127020:intron 25.0%
! GAAAAAAAAAAAGTTGTACC+TGG - chr7_3:78531741-78531760 None:intergenic 25.0%
!! ATGATTATCATTTTGTGGAT+AGG - chr7_3:78531881-78531900 None:intergenic 25.0%
!! CTATTCAATTAGTTTCTTGA+AGG + chr7_3:78532016-78532035 Msa1127020:intron 25.0%
! TCTACATTACGTATTATATG+TGG + chr7_3:78532068-78532087 Msa1127020:intron 25.0%
! CTACATTACGTATTATATGT+GGG + chr7_3:78532069-78532088 Msa1127020:intron 25.0%
! TACATTACGTATTATATGTG+GGG + chr7_3:78532070-78532089 Msa1127020:intron 25.0%
! AGGGGTAATAAAATTAGAAA+AGG + chr7_3:78532148-78532167 Msa1127020:intron 25.0%
! GTCAATCAGTAATTAAGTAA+TGG - chr7_3:78532436-78532455 None:intergenic 25.0%
!! AACTTAAGTAATTTTTCTGG+AGG + chr7_3:78532544-78532563 Msa1127020:intron 25.0%
! GTGAACTGAAAACATAAATA+AGG - chr7_3:78532679-78532698 None:intergenic 25.0%
!!! ACTTCATTTTTTGCTATACA+TGG + chr7_3:78532775-78532794 Msa1127020:intron 25.0%
!! GAAATTTTGAGCAATGTTTA+AGG - chr7_3:78532953-78532972 None:intergenic 25.0%
! ATATAATCTGTTGTCAATAG+CGG - chr7_3:78533164-78533183 None:intergenic 25.0%
! GACAACAGATTATATATAAG+TGG + chr7_3:78533169-78533188 Msa1127020:intron 25.0%
! AACAATATCTTTCAATGTGT+TGG + chr7_3:78533196-78533215 Msa1127020:intron 25.0%
! ACATGTACAAAATAGACATT+AGG - chr7_3:78533313-78533332 None:intergenic 25.0%
!!! GAATTGATTTTGGTATGTTA+AGG + chr7_3:78533377-78533396 Msa1127020:intron 25.0%
!! ATCGATTCTAACTTAAAGTT+CGG + chr7_3:78533430-78533449 Msa1127020:intron 25.0%
!!! AGTACTTGTTTTAGTTTTGT+TGG + chr7_3:78533683-78533702 Msa1127020:intron 25.0%
!! TATTATTGAATTTTGCAAGG+AGG + chr7_3:78534186-78534205 Msa1127020:intron 25.0%
! TAATTCTTTACTATCAAGCA+TGG - chr7_3:78534308-78534327 None:intergenic 25.0%
! AAATATACAAGATTCAAGCA+GGG - chr7_3:78534394-78534413 None:intergenic 25.0%
! TAAATATACAAGATTCAAGC+AGG - chr7_3:78534395-78534414 None:intergenic 25.0%
!! GTATATTTAGTTGTACCTTT+TGG + chr7_3:78534406-78534425 Msa1127020:intron 25.0%
! AAAATATGCAATACTTACTG+AGG - chr7_3:78534717-78534736 None:intergenic 25.0%
! CTGTTGTTAATTAGAGTTAT+AGG + chr7_3:78534837-78534856 Msa1127020:intron 25.0%
! TGTTAATTAGAGTTATAGGA+TGG + chr7_3:78534841-78534860 Msa1127020:intron 25.0%
!! TATTTTGTCAACAATTTCAG+AGG + chr7_3:78535116-78535135 Msa1127020:intron 25.0%
! AGCACATCAAATATTGTAAA+AGG + chr7_3:78535168-78535187 Msa1127020:CDS 25.0%
! AATAAGACCCATCTAATTAA+TGG - chr7_3:78535304-78535323 None:intergenic 25.0%
! AGCAGATCTAACAAAAAAAA+AGG - chr7_3:78535354-78535373 None:intergenic 25.0%
! TTCCCAATAACCAATAATAA+TGG + chr7_3:78535463-78535482 Msa1127020:three_prime_UTR 25.0%
!! CTTCCATTATTATTGGTTAT+TGG - chr7_3:78535469-78535488 None:intergenic 25.0%
! AAAAACATACATCTAAGTCA+AGG - chr7_3:78535520-78535539 None:intergenic 25.0%
!!! TTTTTTCTTCCTTTCCCAAT+CGG + chr7_3:78531754-78531773 Msa1127020:intron 30.0%
!!! TTTTCTACTAGTTTAGCTCT+TGG + chr7_3:78531796-78531815 Msa1127020:intron 30.0%
TTCAGTACAGTAATGATTTC+TGG + chr7_3:78531905-78531924 Msa1127020:intron 30.0%
AAATTATTTGTAGCTGTAGC+TGG + chr7_3:78532103-78532122 Msa1127020:intron 30.0%
!!! ACCTTTTTTGTAGTTGAGAA+AGG + chr7_3:78532219-78532238 Msa1127020:intron 30.0%
ACCTTTCTCAACTACAAAAA+AGG - chr7_3:78532223-78532242 None:intergenic 30.0%
! AATGGTGATGTTTAAAATGG+AGG + chr7_3:78532281-78532300 Msa1127020:intron 30.0%
! ATGGTGATGTTTAAAATGGA+GGG + chr7_3:78532282-78532301 Msa1127020:intron 30.0%
ATAGAGAGAAATGTAGAGAA+AGG + chr7_3:78532339-78532358 Msa1127020:intron 30.0%
AGCATAAATATACAAGCCTT+AGG - chr7_3:78532614-78532633 None:intergenic 30.0%
TACTATTTATAGGTTCGCTT+TGG + chr7_3:78533061-78533080 Msa1127020:intron 30.0%
GTACAAAATAGACATTAGGT+GGG - chr7_3:78533309-78533328 None:intergenic 30.0%
TGTACAAAATAGACATTAGG+TGG - chr7_3:78533310-78533329 None:intergenic 30.0%
!! TGTTTGAATTCACTTTTGAG+AGG + chr7_3:78533330-78533349 Msa1127020:intron 30.0%
AAATAAACTTCACGTGCATT+TGG - chr7_3:78533590-78533609 None:intergenic 30.0%
CATAAAGATATAGATAGGGA+GGG - chr7_3:78533871-78533890 None:intergenic 30.0%
ACATAAAGATATAGATAGGG+AGG - chr7_3:78533872-78533891 None:intergenic 30.0%
TGTTTGTCAATGTCATGTAA+TGG + chr7_3:78533901-78533920 Msa1127020:intron 30.0%
GATTTAAGAACTCAACTTTC+TGG + chr7_3:78533931-78533950 Msa1127020:intron 30.0%
ATACAAAGTAGCAGTAACAT+AGG - chr7_3:78533983-78534002 None:intergenic 30.0%
AACACATTTGTGTAAATCTG+TGG - chr7_3:78534099-78534118 None:intergenic 30.0%
ACCAAATACTGATAAATCAG+AGG + chr7_3:78534139-78534158 Msa1127020:CDS 30.0%
ACCTCTGATTTATCAGTATT+TGG - chr7_3:78534143-78534162 None:intergenic 30.0%
TCAGAGGTAAGTTAAATATC+TGG + chr7_3:78534155-78534174 Msa1127020:intron 30.0%
AAGCTGAGATTAATTCCAAA+AGG - chr7_3:78534424-78534443 None:intergenic 30.0%
TGACATATCTCTCAAAATGA+TGG + chr7_3:78534443-78534462 Msa1127020:intron 30.0%
ATCTTATGCGAGTAATTCTT+CGG - chr7_3:78534601-78534620 None:intergenic 30.0%
AGTAGAATATCAACACATGA+CGG + chr7_3:78534917-78534936 Msa1127020:intron 30.0%
ACTAACAAACAAGATCACAA+CGG - chr7_3:78535075-78535094 None:intergenic 30.0%
AATTTCTATCAAGAAGCTCT+AGG + chr7_3:78535233-78535252 Msa1127020:CDS 30.0%
! ATTAATGGACATGGAAGATA+TGG - chr7_3:78535289-78535308 None:intergenic 30.0%
TTCCATGTCCATTAATTAGA+TGG + chr7_3:78535293-78535312 Msa1127020:three_prime_UTR 30.0%
TCCATGTCCATTAATTAGAT+GGG + chr7_3:78535294-78535313 Msa1127020:three_prime_UTR 30.0%
!! ATGGGTCTTATTCCATTTAA+AGG + chr7_3:78535312-78535331 Msa1127020:three_prime_UTR 30.0%
TTTACTGTACAAATTATGGG+AGG + chr7_3:78535404-78535423 Msa1127020:three_prime_UTR 30.0%
TTACTGTACAAATTATGGGA+GGG + chr7_3:78535405-78535424 Msa1127020:three_prime_UTR 30.0%
! AAGGGAGTTATTCATTGATT+TGG + chr7_3:78535431-78535450 Msa1127020:three_prime_UTR 30.0%
!! AGGGAGTTATTCATTGATTT+GGG + chr7_3:78535432-78535451 Msa1127020:three_prime_UTR 30.0%
! ACCAATAATAATGGAAGTTC+AGG + chr7_3:78535472-78535491 Msa1127020:three_prime_UTR 30.0%
TCCTGAACTTCCATTATTAT+TGG - chr7_3:78535476-78535495 None:intergenic 30.0%
TATTCGGCTTATTACATGAA+TGG - chr7_3:78535548-78535567 None:intergenic 30.0%
! GTACCAAAAACGTTGTTATT+CGG - chr7_3:78535564-78535583 None:intergenic 30.0%
CTTTATCATTGACCAAACAC+AGG + chr7_3:78531184-78531203 Msa1127020:five_prime_UTR 35.0%
! AAAAGGTTGTAGTGAGGTTT+TGG + chr7_3:78531353-78531372 Msa1127020:five_prime_UTR 35.0%
! TTCAACTTTTCTTCTTCCAC+CGG + chr7_3:78531435-78531454 Msa1127020:CDS 35.0%
AAAGAGGGGTAAGAATTGAA+AGG - chr7_3:78531573-78531592 None:intergenic 35.0%
! TTTTTCTTCCTTTCCCAATC+GGG + chr7_3:78531755-78531774 Msa1127020:intron 35.0%
!!! ACTCTGTGTTTCACCTTTTT+TGG + chr7_3:78531832-78531851 Msa1127020:intron 35.0%
!!! CTCTGTGTTTCACCTTTTTT+GGG + chr7_3:78531833-78531852 Msa1127020:intron 35.0%
!!! TCTGTGTTTCACCTTTTTTG+GGG + chr7_3:78531834-78531853 Msa1127020:intron 35.0%
TTACGTATTATATGTGGGGA+TGG + chr7_3:78532074-78532093 Msa1127020:intron 35.0%
TACGTATTATATGTGGGGAT+GGG + chr7_3:78532075-78532094 Msa1127020:intron 35.0%
CTCAACTACAAAAAAGGTAG+AGG - chr7_3:78532217-78532236 None:intergenic 35.0%
! ATTACTGATTGACCTCAAGT+AGG + chr7_3:78532443-78532462 Msa1127020:intron 35.0%
AGTTTGATTCCTAGAGTTGT+TGG - chr7_3:78532528-78532547 None:intergenic 35.0%
GTGTTGGGAGAGTTTATATT+TGG - chr7_3:78532582-78532601 None:intergenic 35.0%
AGGTAATAGGAGTGAACTTA+TGG + chr7_3:78532709-78532728 Msa1127020:intron 35.0%
GGTAATAGGAGTGAACTTAT+GGG + chr7_3:78532710-78532729 Msa1127020:intron 35.0%
ATGTTGTCAATGCGAAAATG+CGG + chr7_3:78532806-78532825 Msa1127020:intron 35.0%
AAGGGATAGCAAAATCGAAA+AGG + chr7_3:78532998-78533017 Msa1127020:intron 35.0%
AGGGATAGCAAAATCGAAAA+GGG + chr7_3:78532999-78533018 Msa1127020:intron 35.0%
!!! GCTTTTGGGATTGATGTTAT+TGG + chr7_3:78533257-78533276 Msa1127020:intron 35.0%
! GAAGTCTTCGAAATCACTTT+TGG - chr7_3:78533357-78533376 None:intergenic 35.0%
!! CGAAGACTTCGAATTGATTT+TGG + chr7_3:78533367-78533386 Msa1127020:intron 35.0%
TGCACGTGAAGTTTATTTGT+TGG + chr7_3:78533592-78533611 Msa1127020:intron 35.0%
! ACGTGAAGTTTATTTGTTGG+AGG + chr7_3:78533595-78533614 Msa1127020:intron 35.0%
CACTAAAAGCTCTGTAAAAG+TGG + chr7_3:78533638-78533657 Msa1127020:intron 35.0%
!! GGTTTGTTTTTCTGTGTTAC+TGG + chr7_3:78533659-78533678 Msa1127020:intron 35.0%
!!! TAAGTGTTGAGTTTTCTGTC+AGG + chr7_3:78533769-78533788 Msa1127020:intron 35.0%
ACTTGATTTCTATGCAAACC+TGG + chr7_3:78533842-78533861 Msa1127020:CDS 35.0%
TCACACCAAAATGCTGTTAT+TGG + chr7_3:78533955-78533974 Msa1127020:intron 35.0%
! AGGAACCAATAACAGCATTT+TGG - chr7_3:78533963-78533982 None:intergenic 35.0%
CCTGAAGTTGAAATTGACAA+CGG - chr7_3:78534227-78534246 None:intergenic 35.0%
! CTTCAGGCTTAGATAGTTTT+TGG + chr7_3:78534240-78534259 Msa1127020:intron 35.0%
TTACTATCAAGCATGGATGA+GGG - chr7_3:78534301-78534320 None:intergenic 35.0%
TTTACTATCAAGCATGGATG+AGG - chr7_3:78534302-78534321 None:intergenic 35.0%
ACTCATTTATGTGCTGTGAT+AGG - chr7_3:78534358-78534377 None:intergenic 35.0%
TTCATTCAATCTTCTGTCGA+GGG + chr7_3:78534622-78534641 Msa1127020:CDS 35.0%
AGTTACTCATAAGGAACACA+AGG - chr7_3:78534876-78534895 None:intergenic 35.0%
CACAACGGAATGATTGAAAA+AGG - chr7_3:78535060-78535079 None:intergenic 35.0%
! GTTGTGATCTTGTTTGTTAG+TGG + chr7_3:78535074-78535093 Msa1127020:intron 35.0%
AGTCTGATTCAGATCTTCTT+TGG + chr7_3:78535208-78535227 Msa1127020:CDS 35.0%
! ACCCATCTAATTAATGGACA+TGG - chr7_3:78535298-78535317 None:intergenic 35.0%
! AAGAAAGTCTGGCCTTTAAA+TGG - chr7_3:78535327-78535346 None:intergenic 35.0%
AAAAAGGTCAGAAGAAAGTC+TGG - chr7_3:78535338-78535357 None:intergenic 35.0%
! AAGCCGAATAACAACGTTTT+TGG + chr7_3:78535558-78535577 Msa1127020:three_prime_UTR 35.0%
ACGCAAAAAAGGTTGTAGTG+AGG + chr7_3:78531347-78531366 Msa1127020:five_prime_UTR 40.0%
!! GAAGAGAAGCATCAATCGTT+AGG + chr7_3:78531387-78531406 Msa1127020:five_prime_UTR 40.0%
! GAAGCATCAATCGTTAGGAT+AGG + chr7_3:78531392-78531411 Msa1127020:five_prime_UTR 40.0%
CATCAATCGTTAGGATAGGA+TGG + chr7_3:78531396-78531415 Msa1127020:exon 40.0%
ACGGAAGAAGAAGAAGTTTC+CGG - chr7_3:78531457-78531476 None:intergenic 40.0%
! AAGAGCGTATGTCAGAGAAA+CGG - chr7_3:78531476-78531495 None:intergenic 40.0%
CAAAGCAAAGGAGCGAATTT+GGG - chr7_3:78531520-78531539 None:intergenic 40.0%
CAAATTCGCTCCTTTGCTTT+GGG + chr7_3:78531519-78531538 Msa1127020:CDS 40.0%
GGTAAGAATTGAAAGGATGG+GGG - chr7_3:78531566-78531585 None:intergenic 40.0%
GGGTAAGAATTGAAAGGATG+GGG - chr7_3:78531567-78531586 None:intergenic 40.0%
GGGGTAAGAATTGAAAGGAT+GGG - chr7_3:78531568-78531587 None:intergenic 40.0%
AGGGGTAAGAATTGAAAGGA+TGG - chr7_3:78531569-78531588 None:intergenic 40.0%
CATTTCATCATACACACGGT+TGG - chr7_3:78531678-78531697 None:intergenic 40.0%
! GAGGCATTTCATCATACACA+CGG - chr7_3:78531682-78531701 None:intergenic 40.0%
TTTGGTGAGGGAAGAAAAAG+AGG - chr7_3:78531701-78531720 None:intergenic 40.0%
!! ACATGAGAAGGATTTGGTGA+GGG - chr7_3:78531713-78531732 None:intergenic 40.0%
!! AACATGAGAAGGATTTGGTG+AGG - chr7_3:78531714-78531733 None:intergenic 40.0%
GTACGAACATGAGAAGGATT+TGG - chr7_3:78531719-78531738 None:intergenic 40.0%
!!! CTGTGTTTCACCTTTTTTGG+GGG + chr7_3:78531835-78531854 Msa1127020:intron 40.0%
ACGTATTATATGTGGGGATG+GGG + chr7_3:78532076-78532095 Msa1127020:intron 40.0%
ACCATTGAATCTAACGCAAG+TGG + chr7_3:78532172-78532191 Msa1127020:intron 40.0%
ACCACTTGCGTTAGATTCAA+TGG - chr7_3:78532176-78532195 None:intergenic 40.0%
AGTTAGATGATCCAAATCCG+TGG + chr7_3:78532374-78532393 Msa1127020:intron 40.0%
GTTAGATGATCCAAATCCGT+GGG + chr7_3:78532375-78532394 Msa1127020:intron 40.0%
TTAGATGATCCAAATCCGTG+GGG + chr7_3:78532376-78532395 Msa1127020:intron 40.0%
!! GGCAATGCATCAGAAGTATT+TGG - chr7_3:78532415-78532434 None:intergenic 40.0%
!!! GAGTTGGTTTTTCGTTCTAG+CGG + chr7_3:78532468-78532487 Msa1127020:intron 40.0%
!!! AGTTGGTTTTTCGTTCTAGC+GGG + chr7_3:78532469-78532488 Msa1127020:intron 40.0%
TTGATTCCTAGAGTTGTTGG+AGG - chr7_3:78532525-78532544 None:intergenic 40.0%
AAACTCTCCCAACACTATTC+TGG + chr7_3:78532587-78532606 Msa1127020:intron 40.0%
CTTAGGACCAGAATAGTGTT+GGG - chr7_3:78532597-78532616 None:intergenic 40.0%
TTCAGTTCACATGCGTGTAT+AGG + chr7_3:78532689-78532708 Msa1127020:intron 40.0%
CACATGCGTGTATAGGTAAT+AGG + chr7_3:78532696-78532715 Msa1127020:intron 40.0%
ATTTATAGGTTCGCTTTGGC+CGG + chr7_3:78533065-78533084 Msa1127020:intron 40.0%
! TCCTGATTTTTCCGCTATAG+CGG + chr7_3:78533129-78533148 Msa1127020:intron 40.0%
AGGTGGGAATAAAGTTCATC+TGG - chr7_3:78533293-78533312 None:intergenic 40.0%
!! TTCACGTGCATTTGGTTCTA+AGG - chr7_3:78533582-78533601 None:intergenic 40.0%
ATAATGGCAAACCAAGCTCT+AGG - chr7_3:78533712-78533731 None:intergenic 40.0%
GGTTTGCCATTATGAGTCTA+CGG + chr7_3:78533719-78533738 Msa1127020:intron 40.0%
GACTAACCGTAGACTCATAA+TGG - chr7_3:78533728-78533747 None:intergenic 40.0%
TACAAGCCTGATGCAATCAA+AGG + chr7_3:78533792-78533811 Msa1127020:CDS 40.0%
ATGTCACCTTTGATTGCATC+AGG - chr7_3:78533801-78533820 None:intergenic 40.0%
TGATGCAATCAAAGGTGACA+TGG + chr7_3:78533800-78533819 Msa1127020:CDS 40.0%
AAGGTGACATGGATTCAATC+AGG + chr7_3:78533811-78533830 Msa1127020:CDS 40.0%
TCATTCCATGAATCATGTCG+AGG + chr7_3:78534010-78534029 Msa1127020:intron 40.0%
CATTCCATGAATCATGTCGA+GGG + chr7_3:78534011-78534030 Msa1127020:intron 40.0%
AATTGACGAGTCTCAAGATC+AGG + chr7_3:78534070-78534089 Msa1127020:CDS 40.0%
! TGAATTTTGCAAGGAGGAGA+CGG + chr7_3:78534192-78534211 Msa1127020:intron 40.0%
CCGTTGTCAATTTCAACTTC+AGG + chr7_3:78534224-78534243 Msa1127020:intron 40.0%
ACAAGATTCAAGCAGGGATA+AGG - chr7_3:78534388-78534407 None:intergenic 40.0%
TGAGGCAATCATCAGATAGA+AGG - chr7_3:78534567-78534586 None:intergenic 40.0%
TCTTCGGAAGAAGTTGAATG+AGG - chr7_3:78534585-78534604 None:intergenic 40.0%
CTTCATTCAATCTTCTGTCG+AGG + chr7_3:78534621-78534640 Msa1127020:CDS 40.0%
ATTGTGGACTCGTTCCTATT+GGG + chr7_3:78534650-78534669 Msa1127020:CDS 40.0%
ACAAATTATGGGAGGGTGAA+AGG + chr7_3:78535412-78535431 Msa1127020:three_prime_UTR 40.0%
CAAATTATGGGAGGGTGAAA+GGG + chr7_3:78535413-78535432 Msa1127020:three_prime_UTR 40.0%
! GTTGGTTTCGTACCTGTGTT+TGG - chr7_3:78531199-78531218 None:intergenic 45.0%
GAAGAAGAAGAAGTTTCCGG+TGG - chr7_3:78531454-78531473 None:intergenic 45.0%
CCAAAGCAAAGGAGCGAATT+TGG - chr7_3:78531521-78531540 None:intergenic 45.0%
CCAAATTCGCTCCTTTGCTT+TGG + chr7_3:78531518-78531537 Msa1127020:CDS 45.0%
CATATACGAGTTTGCGCTGA+TGG + chr7_3:78531647-78531666 Msa1127020:CDS 45.0%
ATCCTTCTCATGTTCGTACC+AGG + chr7_3:78531720-78531739 Msa1127020:CDS 45.0%
TACCTGGTACGAACATGAGA+AGG - chr7_3:78531725-78531744 None:intergenic 45.0%
TTTCAGAACCCGATTGGGAA+AGG - chr7_3:78531766-78531785 None:intergenic 45.0%
CACGATTTCAGAACCCGATT+GGG - chr7_3:78531771-78531790 None:intergenic 45.0%
! CATTTTGTGGATAGGACCAC+CGG - chr7_3:78531873-78531892 None:intergenic 45.0%
TGCAAAATGCATCACGTCTG+TGG + chr7_3:78531988-78532007 Msa1127020:intron 45.0%
! TAACGCAAGTGGTTGATGCA+CGG + chr7_3:78532183-78532202 Msa1127020:intron 45.0%
TAGATGATCCAAATCCGTGG+GGG + chr7_3:78532377-78532396 Msa1127020:intron 45.0%
ACTGATTGACCTCAAGTAGG+CGG + chr7_3:78532446-78532465 Msa1127020:intron 45.0%
TAGCTACCTCCAACAACTCT+AGG + chr7_3:78532516-78532535 Msa1127020:intron 45.0%
CCTTAGGACCAGAATAGTGT+TGG - chr7_3:78532598-78532617 None:intergenic 45.0%
CCAACACTATTCTGGTCCTA+AGG + chr7_3:78532595-78532614 Msa1127020:intron 45.0%
! ACCGCTATAGCGGAAAAATC+AGG - chr7_3:78533133-78533152 None:intergenic 45.0%
! GATTTTTCCGCTATAGCGGT+CGG + chr7_3:78533133-78533152 Msa1127020:intron 45.0%
!! ACGTGCATTTGGTTCTAAGG+TGG - chr7_3:78533579-78533598 None:intergenic 45.0%
!! TTTGTTGGTGACCTAGAGCT+TGG + chr7_3:78533698-78533717 Msa1127020:intron 45.0%
! GTCTACGGTTAGTCGATTAC+AGG + chr7_3:78533734-78533753 Msa1127020:intron 45.0%
TATAGATAGGGAGGGATACC+AGG - chr7_3:78533863-78533882 None:intergenic 45.0%
AAGACCCTCGACATGATTCA+TGG - chr7_3:78534018-78534037 None:intergenic 45.0%
GAATCATGTCGAGGGTCTTA+TGG + chr7_3:78534019-78534038 Msa1127020:intron 45.0%
! GAATTTTGCAAGGAGGAGAC+GGG + chr7_3:78534193-78534212 Msa1127020:intron 45.0%
! AATTTTGCAAGGAGGAGACG+GGG + chr7_3:78534194-78534213 Msa1127020:intron 45.0%
TCAAGCAGGGATAAGGTCTA+AGG - chr7_3:78534381-78534400 None:intergenic 45.0%
! CAGCTATGCATTCTTGCTGT+TGG + chr7_3:78534466-78534485 Msa1127020:intron 45.0%
!! ATTCTTGCTGTTGGAGCACT+TGG + chr7_3:78534475-78534494 Msa1127020:CDS 45.0%
GGGAGATTTGATCACGAGAT+TGG + chr7_3:78534499-78534518 Msa1127020:CDS 45.0%
TAGAAGGATAATGCGCGTGT+TGG - chr7_3:78534551-78534570 None:intergenic 45.0%
ATAGGAACGAGTCCACAATG+TGG - chr7_3:78534649-78534668 None:intergenic 45.0%
CATTGTGGACTCGTTCCTAT+TGG + chr7_3:78534649-78534668 Msa1127020:CDS 45.0%
TCCTGTGGTTGTAGAACTTC+CGG - chr7_3:78534683-78534702 None:intergenic 45.0%
AATACTTACTGAGGTCCCAC+TGG - chr7_3:78534708-78534727 None:intergenic 45.0%
GAGGACACAGAGATGAGATT+TGG + chr7_3:78535135-78535154 Msa1127020:intron 45.0%
GACACAGAGATGAGATTTGG+CGG + chr7_3:78535138-78535157 Msa1127020:CDS 45.0%
TACATGTTGCATACTGCACC+TGG + chr7_3:78535259-78535278 Msa1127020:three_prime_UTR 45.0%
CATGGAAGATATGGAAAGCC+AGG - chr7_3:78535280-78535299 None:intergenic 45.0%
!! ATAAATAAATAATACTAATT+AGG + chr7_3:78531951-78531970 Msa1127020:intron 5.0%
ATACCGTGGTCCCAAAGCAA+AGG - chr7_3:78531532-78531551 None:intergenic 50.0%
GGGTGCAGAAAGAAATACCG+TGG - chr7_3:78531546-78531565 None:intergenic 50.0%
! ATACGAGTTTGCGCTGATGG+AGG + chr7_3:78531650-78531669 Msa1127020:CDS 50.0%
GCACGATTTCAGAACCCGAT+TGG - chr7_3:78531772-78531791 None:intergenic 50.0%
AATGGCAGAGCCCCCAAAAA+AGG - chr7_3:78531848-78531867 None:intergenic 50.0%
AAACCAACTCCGCCTACTTG+AGG - chr7_3:78532458-78532477 None:intergenic 50.0%
CGCGTGTCAAAAGTGGAAAC+CGG - chr7_3:78533087-78533106 None:intergenic 50.0%
! GTCGAGGGTCTTATGGTCTT+TGG + chr7_3:78534026-78534045 Msa1127020:intron 50.0%
! TATGGTCTTTGGCTTCCTGC+AGG + chr7_3:78534037-78534056 Msa1127020:intron 50.0%
! ATGGTCTTTGGCTTCCTGCA+GGG + chr7_3:78534038-78534057 Msa1127020:intron 50.0%
CAATTATCTTCGTCCCCTGC+AGG - chr7_3:78534055-78534074 None:intergenic 50.0%
! ATTTTGCAAGGAGGAGACGG+GGG + chr7_3:78534195-78534214 Msa1127020:intron 50.0%
! TTGCTGTTGGAGCACTTGGT+GGG + chr7_3:78534479-78534498 Msa1127020:CDS 50.0%
GTTCCTATTGGGATGCCATC+CGG + chr7_3:78534661-78534680 Msa1127020:CDS 50.0%
GTGGTTGTAGAACTTCCGGA+TGG - chr7_3:78534679-78534698 None:intergenic 50.0%
TCCGGAAGTTCTACAACCAC+AGG + chr7_3:78534679-78534698 Msa1127020:CDS 50.0%
TACAACCACAGGACTCCAGT+GGG + chr7_3:78534690-78534709 Msa1127020:CDS 50.0%
!! GCTCCTTTGCTTTGGGACCA+CGG + chr7_3:78531526-78531545 Msa1127020:CDS 55.0%
TGGATAGGACCACCGGTGAA+TGG - chr7_3:78531866-78531885 None:intergenic 55.0%
TGACCTCAAGTAGGCGGAGT+TGG + chr7_3:78532452-78532471 Msa1127020:intron 55.0%
GTCAATGCGAAAATGCGGCG+TGG + chr7_3:78532811-78532830 Msa1127020:intron 55.0%
AAAATCAGGACCACCGCACC+AGG - chr7_3:78533119-78533138 None:intergenic 55.0%
! TGGTCTTTGGCTTCCTGCAG+GGG + chr7_3:78534039-78534058 Msa1127020:intron 55.0%
!! CTTGCTGTTGGAGCACTTGG+TGG + chr7_3:78534478-78534497 Msa1127020:CDS 55.0%
TCTGTCGAGGGTCCACATTG+TGG + chr7_3:78534634-78534653 Msa1127020:CDS 55.0%
CTTCCGGATGGCATCCCAAT+AGG - chr7_3:78534667-78534686 None:intergenic 55.0%
CTACAACCACAGGACTCCAG+TGG + chr7_3:78534689-78534708 Msa1127020:CDS 55.0%
TTGGGGGCTCTGCCATTCAC+CGG + chr7_3:78531851-78531870 Msa1127020:intron 60.0%
TGTGTGTGCCCCCACGGATT+TGG - chr7_3:78532388-78532407 None:intergenic 60.0%
GGATCTTGTGTGTGCCCCCA+CGG - chr7_3:78532394-78532413 None:intergenic 60.0%
TGCGGCGTGGCCAACTCAAT+TGG + chr7_3:78532824-78532843 Msa1127020:intron 60.0%
CGTGGCCAACTCAATTGGCG+CGG + chr7_3:78532829-78532848 Msa1127020:intron 60.0%
CCAACTCAATTGGCGCGGTG+CGG + chr7_3:78532834-78532853 Msa1127020:intron 60.0%
CAACTCAATTGGCGCGGTGC+GGG + chr7_3:78532835-78532854 Msa1127020:intron 60.0%
GCGCGTAGCAGGCGCTATTT+CGG + chr7_3:78532864-78532883 Msa1127020:intron 60.0%
! CGTAGCAGGCGCTATTTCGG+TGG + chr7_3:78532867-78532886 Msa1127020:intron 60.0%
!! ACTTTTGACACGCGCCGACG+CGG + chr7_3:78533093-78533112 Msa1127020:intron 60.0%
TTCCGCTATAGCGGTCGGTG+CGG + chr7_3:78533138-78533157 Msa1127020:intron 60.0%
CCGCACCGCGCCAATTGAGT+TGG - chr7_3:78532837-78532856 None:intergenic 65.0%
! GCGTCGGCGCGTGTCAAAAG+TGG - chr7_3:78533094-78533113 None:intergenic 65.0%
GAGGTCCCACTGGAGTCCTG+TGG - chr7_3:78534698-78534717 None:intergenic 65.0%
GGGGCTCTGCCATTCACCGG+TGG + chr7_3:78531854-78531873 Msa1127020:intron 70.0%
CAATTGGCGCGGTGCGGGAG+CGG + chr7_3:78532840-78532859 Msa1127020:intron 70.0%
AATTGGCGCGGTGCGGGAGC+GGG + chr7_3:78532841-78532860 Msa1127020:intron 70.0%
! GGCCGCACCGACCGCTATAG+CGG - chr7_3:78533143-78533162 None:intergenic 70.0%
ATTGGCGCGGTGCGGGAGCG+GGG + chr7_3:78532842-78532861 Msa1127020:intron 75.0%
ACCACCGCACCAGGCCGCGT+CGG - chr7_3:78533110-78533129 None:intergenic 75.0%
!! TGACACGCGCCGACGCGGCC+TGG + chr7_3:78533098-78533117 Msa1127020:intron 80.0%
! GCGGGAGCGGGGCGCGTAGC+AGG + chr7_3:78532853-78532872 Msa1127020:intron 85.0%
!! CGCGCCGACGCGGCCTGGTG+CGG + chr7_3:78533103-78533122 Msa1127020:intron 85.0%
! GCCGACGCGGCCTGGTGCGG+TGG + chr7_3:78533106-78533125 Msa1127020:intron 85.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 78531184 78535586 78531184 ID=Msa1127020;Name=Msa1127020
chr7_3 mRNA 78531184 78535586 78531184 ID=Msa1127020-mRNA-1;Parent=Msa1127020;Name=Msa1127020-mRNA-1;_AED=0.02;_eAED=0.02;_QI=231|1|1|1|1|1|6|332|257
chr7_3 exon 78531184 78531547 78531184 ID=Msa1127020-mRNA-1:exon:21952;Parent=Msa1127020-mRNA-1
chr7_3 exon 78531645 78531741 78531645 ID=Msa1127020-mRNA-1:exon:21953;Parent=Msa1127020-mRNA-1
chr7_3 exon 78533791 78533863 78533791 ID=Msa1127020-mRNA-1:exon:21954;Parent=Msa1127020-mRNA-1
chr7_3 exon 78534059 78534160 78534059 ID=Msa1127020-mRNA-1:exon:21955;Parent=Msa1127020-mRNA-1
chr7_3 exon 78534469 78534718 78534469 ID=Msa1127020-mRNA-1:exon:21956;Parent=Msa1127020-mRNA-1
chr7_3 exon 78535136 78535586 78535136 ID=Msa1127020-mRNA-1:exon:21957;Parent=Msa1127020-mRNA-1
chr7_3 five_prime_UTR 78531184 78531414 78531184 ID=Msa1127020-mRNA-1:five_prime_utr;Parent=Msa1127020-mRNA-1
chr7_3 CDS 78531415 78531547 78531415 ID=Msa1127020-mRNA-1:cds;Parent=Msa1127020-mRNA-1
chr7_3 CDS 78531645 78531741 78531645 ID=Msa1127020-mRNA-1:cds;Parent=Msa1127020-mRNA-1
chr7_3 CDS 78533791 78533863 78533791 ID=Msa1127020-mRNA-1:cds;Parent=Msa1127020-mRNA-1
chr7_3 CDS 78534059 78534160 78534059 ID=Msa1127020-mRNA-1:cds;Parent=Msa1127020-mRNA-1
chr7_3 CDS 78534469 78534718 78534469 ID=Msa1127020-mRNA-1:cds;Parent=Msa1127020-mRNA-1
chr7_3 CDS 78535136 78535254 78535136 ID=Msa1127020-mRNA-1:cds;Parent=Msa1127020-mRNA-1
chr7_3 three_prime_UTR 78535255 78535586 78535255 ID=Msa1127020-mRNA-1:three_prime_utr;Parent=Msa1127020-mRNA-1
Gene Sequence

>Msa1127020

ATGGAGTTGATGTGTCATTGTTCAACTTTTCTTCTTCCACCGGAAACTTCTTCTTCTTCCGTTTCTCTGACATACGCTCTTGTTATTCTCAATCAAAATCTTCCCAAATTCGCTCCTTTGCTTTGGGACCACGCTCATATACGAGTTTGCGCTGATGGAGGTGCCAACCGTGTGTATGATGAAATGCCTCTTTTTCTTCCCTCACCAAATCCTTCTCATGTTCGTACCAGGTACAAGCCTGATGCAATCAAAGGTGACATGGATTCAATCAGGACAGAAGTACTTGATTTCTATGCAAACCTGGGGACGAAGATAATTGACGAGTCTCAAGATCAGGACACCACAGATTTACACAAATGTGTTGCATACATTCGTGACCTTATACCAAATACTGATAAATCAGAGCTATGCATTCTTGCTGTTGGAGCACTTGGTGGGAGATTTGATCACGAGATTGGAAATATTAATGTGCTATGTCGATTCTCCAACACGCGCATTATCCTTCTATCTGATGATTGCCTCATTCAACTTCTTCCGAAGAATTACTCGCATAAGATCTTCATTCAATCTTCTGTCGAGGGTCCACATTGTGGACTCGTTCCTATTGGGATGCCATCCGGAAGTTCTACAACCACAGGACTCCAGTGGGACCTCAAGGACACAGAGATGAGATTTGGCGGTTTAGTAAGCACATCAAATATTGTAAAAGGAGATATAGTAACAGTACAGTCTGATTCAGATCTTCTTTGGACAATTTCTATCAAGAAGCTCTAG
Protein sequence

>Msa1127020

MELMCHCSTFLLPPETSSSSVSLTYALVILNQNLPKFAPLLWDHAHIRVCADGGANRVYDEMPLFLPSPNPSHVRTRYKPDAIKGDMDSIRTEVLDFYANLGTKIIDESQDQDTTDLHKCVAYIRDLIPNTDKSELCILAVGALGGRFDHEIGNINVLCRFSNTRIILLSDDCLIQLLPKNYSHKIFIQSSVEGPHCGLVPIGMPSGSSTTTGLQWDLKDTEMRFGGLVSTSNIVKGDIVTVQSDSDLLWTISIKKL*