Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127180 | XP_039684274.1 | 91.004 | 667 | 41 | 5 | 1 | 664 | 1 | 651 | 0.0 | 1164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127180 | sp|F4HXL0|PLIP2_ARATH | 52.263 | 729 | 247 | 19 | 1 | 659 | 1 | 698 | 0.0 | 618 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127180 | G7KSR9 | 90.855 | 667 | 47 | 5 | 1 | 664 | 1 | 656 | 0.0 | 1160 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1041150 | Msa1127180 | 0.942017 | 1.510748e-101 | -8.615850e-47 |
| Msa1082310 | Msa1127180 | 0.819680 | 1.022613e-52 | -8.615850e-47 |
| Msa1127180 | Msa1362010 | 0.995917 | 2.541303e-221 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127180 | MtrunA17_Chr7g0269851 | 88.389 | 689 | 51 | 6 | 1 | 664 | 1 | 685 | 0.0 | 1157 |
| Msa1127180 | MtrunA17_Chr1g0194901 | 59.748 | 713 | 204 | 16 | 1 | 659 | 1 | 684 | 0.0 | 779 |
| Msa1127180 | MtrunA17_Chr7g0275571 | 41.652 | 581 | 262 | 14 | 73 | 601 | 113 | 668 | 8.13e-127 | 391 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1127180 | AT1G02660.1 | 52.263 | 729 | 247 | 19 | 1 | 659 | 1 | 698 | 0.0 | 618 |
| Msa1127180 | AT3G62590.1 | 51.223 | 613 | 219 | 9 | 68 | 659 | 72 | 625 | 0.0 | 544 |
| Msa1127180 | AT3G61680.2 | 46.729 | 535 | 242 | 11 | 83 | 600 | 120 | 628 | 1.38e-145 | 438 |
| Msa1127180 | AT3G61680.1 | 46.729 | 535 | 242 | 11 | 83 | 600 | 120 | 628 | 1.38e-145 | 438 |
| Msa1127180 | AT3G61680.3 | 46.729 | 535 | 242 | 11 | 83 | 600 | 120 | 628 | 1.38e-145 | 438 |
Find 153 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACGGCCAGGCAATTGTTTC+TGG | 0.131284 | 7_3:+78695335 | None:intergenic |
| CATGTCTCACTTGGGGAATT+TGG | 0.213240 | 7_3:-78695037 | Msa1127180:CDS |
| TCCTTGCTGCCGTGCGGATT+TGG | 0.226066 | 7_3:+78692796 | None:intergenic |
| TGCGGATTTGGCTGAGTTCT+TGG | 0.237935 | 7_3:+78692808 | None:intergenic |
| CGTTTCACTGGCCATTCTCT+TGG | 0.258914 | 7_3:-78693582 | Msa1127180:CDS |
| CCAGCTCAAAGCTGCTAAAT+TGG | 0.265066 | 7_3:-78692955 | Msa1127180:CDS |
| CAAAGACATGAAAGCATAAA+AGG | 0.269225 | 7_3:+78694971 | None:intergenic |
| GATGAAATAAACCTTGATAT+TGG | 0.297573 | 7_3:+78695002 | None:intergenic |
| GAAGAAGGAGATGGACAAAA+TGG | 0.299306 | 7_3:-78695276 | Msa1127180:CDS |
| AGTAATTCTGCGACATGGTT+AGG | 0.309991 | 7_3:+78693351 | None:intergenic |
| GTTTCACTGGCCATTCTCTT+GGG | 0.310775 | 7_3:-78693581 | Msa1127180:CDS |
| TTGCTTCCTGTGGTAACCTT+TGG | 0.325594 | 7_3:-78693495 | Msa1127180:CDS |
| ATGAAATAAACCTTGATATT+GGG | 0.350525 | 7_3:+78695003 | None:intergenic |
| ACAGGAAGCAAAGAAGAAAT+AGG | 0.368214 | 7_3:+78693507 | None:intergenic |
| AGTCCTTGAAAAGGTTTAGT+AGG | 0.369572 | 7_3:-78692632 | Msa1127180:CDS |
| AACTGACGTTGGGTCTTTGA+TGG | 0.377743 | 7_3:-78694261 | Msa1127180:CDS |
| TTATTACAAAGTGGGATTCC+TGG | 0.377761 | 7_3:-78695498 | Msa1127180:CDS |
| ACAAGGATGACTGCGGAAAC+TGG | 0.384297 | 7_3:+78693314 | None:intergenic |
| GCAGTAATAGAAGTGATTAA+AGG | 0.396032 | 7_3:+78695468 | None:intergenic |
| TAAATCTTATGCTGTTGATA+AGG | 0.405800 | 7_3:-78693539 | Msa1127180:CDS |
| ACCTAAAATCTCAAGGTTCT+CGG | 0.414863 | 7_3:-78693614 | Msa1127180:CDS |
| TGTCTGTTTAATCCCTGAAA+AGG | 0.415869 | 7_3:+78692662 | None:intergenic |
| CGGGCAACTTTCCGTTTCAC+TGG | 0.425212 | 7_3:-78693594 | Msa1127180:CDS |
| AACAACCGCTGTCATTGAAT+TGG | 0.425475 | 7_3:+78694232 | None:intergenic |
| GAGATGGACAAAATGGGAAC+TGG | 0.438740 | 7_3:-78695269 | Msa1127180:CDS |
| CTTAATATCTCGAGGGGATG+TGG | 0.443615 | 7_3:+78692918 | None:intergenic |
| TTCTCCGGCATCTTTCCCAT+TGG | 0.445792 | 7_3:+78694403 | None:intergenic |
| CCTGGCCGTCGACGAGGTTA+CGG | 0.447816 | 7_3:-78695322 | Msa1127180:CDS |
| ACAATTACCTCAAATTGAAC+TGG | 0.447991 | 7_3:+78693873 | None:intergenic |
| CAGCCTCATAGATACCTCTA+TGG | 0.448318 | 7_3:+78693679 | None:intergenic |
| CAAGTTCTTCACCCTGTGAA+TGG | 0.449149 | 7_3:-78694160 | Msa1127180:CDS |
| TGTGAGATTGCAGTGGTTGA+AGG | 0.449691 | 7_3:-78694332 | Msa1127180:CDS |
| GTAATTCTGCGACATGGTTA+GGG | 0.460593 | 7_3:+78693352 | None:intergenic |
| CCTAAAATCTCAAGGTTCTC+GGG | 0.463443 | 7_3:-78693613 | Msa1127180:CDS |
| ATCAATAGAGAAGAAGGAAC+TGG | 0.468428 | 7_3:-78694450 | Msa1127180:CDS |
| ATACTCTATTCCCAATATCA+AGG | 0.470253 | 7_3:-78695013 | Msa1127180:CDS |
| TTTCACTGGCCATTCTCTTG+GGG | 0.474247 | 7_3:-78693580 | Msa1127180:CDS |
| CCAATTTAGCAGCTTTGAGC+TGG | 0.478041 | 7_3:+78692955 | None:intergenic |
| CTACAAACAGTTGCATATGT+TGG | 0.479518 | 7_3:+78692598 | None:intergenic |
| GACCGATCCGCCTATGGACC+TGG | 0.482864 | 7_3:-78692894 | Msa1127180:CDS |
| CCGTAACCTCGTCGACGGCC+AGG | 0.484027 | 7_3:+78695322 | None:intergenic |
| TACAAACAGTTGCATATGTT+GGG | 0.484145 | 7_3:+78692599 | None:intergenic |
| TATGAATCTGTAAAACTTGG+AGG | 0.485150 | 7_3:+78695368 | None:intergenic |
| AGCCAGGGAACCTCTTGAAA+AGG | 0.486455 | 7_3:-78694496 | Msa1127180:CDS |
| TCTTAATTCTGTATGGAAAG+AGG | 0.488435 | 7_3:-78695229 | Msa1127180:CDS |
| CATGTCATGATCTCTGTGTA+TGG | 0.489901 | 7_3:+78692866 | None:intergenic |
| GTATCTATGAGGCTGCTAAA+GGG | 0.492305 | 7_3:-78693671 | Msa1127180:CDS |
| CACCTCCACACATGATGGAC+GGG | 0.493139 | 7_3:+78693469 | None:intergenic |
| TTAAGTGACCGATCCGCCTA+TGG | 0.498782 | 7_3:-78692900 | Msa1127180:CDS |
| GTAAACAGAGTTGTGGAAGA+AGG | 0.499077 | 7_3:-78695291 | Msa1127180:CDS |
| ACCTATGAATCTGTAAAACT+TGG | 0.499685 | 7_3:+78695365 | None:intergenic |
| GTTCAGAGTCATTTGAATCC+TGG | 0.500446 | 7_3:-78693917 | Msa1127180:CDS |
| CAAGAGAATGGCCAGTGAAA+CGG | 0.500612 | 7_3:+78693583 | None:intergenic |
| TATTTCTTCTTTGCTTCCTG+TGG | 0.504548 | 7_3:-78693505 | Msa1127180:CDS |
| GAAAGCATAAAAGGAAATGA+AGG | 0.504951 | 7_3:+78694980 | None:intergenic |
| GGTATCTATGAGGCTGCTAA+AGG | 0.505259 | 7_3:-78693672 | Msa1127180:CDS |
| GTGTTCTTGCTTCCTACTCT+CGG | 0.506196 | 7_3:-78692576 | Msa1127180:CDS |
| CAGGTAGAAAGTCCTTGAAA+AGG | 0.511559 | 7_3:-78692641 | Msa1127180:CDS |
| GCTGAGTTCTTGGCGAATCA+CGG | 0.511618 | 7_3:+78692818 | None:intergenic |
| GAAAGAAAAGAGGAAAAGAA+TGG | 0.514106 | 7_3:-78694383 | Msa1127180:CDS |
| AAAGGTGCGGTGGCCTCTTG+TGG | 0.515177 | 7_3:-78692760 | Msa1127180:CDS |
| TATGGCTCCTCCAGGTCCAT+AGG | 0.518076 | 7_3:+78692884 | None:intergenic |
| CTTTGTGTTTATTACAAAGT+GGG | 0.518264 | 7_3:-78695506 | Msa1127180:CDS |
| GTCTGTTTAATCCCTGAAAA+GGG | 0.519128 | 7_3:+78692663 | None:intergenic |
| GTCACATATGAACCATTCAC+AGG | 0.527693 | 7_3:+78694148 | None:intergenic |
| AACTTCATCAATAGAGAAGA+AGG | 0.527755 | 7_3:-78694456 | Msa1127180:CDS |
| TAGCCATCATCTTCTTCCAC+CGG | 0.535478 | 7_3:-78693036 | Msa1127180:CDS |
| GTAAGTGATGCGGACATTGT+TGG | 0.536188 | 7_3:-78692729 | Msa1127180:CDS |
| TTTAGGTGAGCATGAACCTC+GGG | 0.536388 | 7_3:+78693630 | None:intergenic |
| CTCCAGGTCCATAGGCGGAT+CGG | 0.536666 | 7_3:+78692892 | None:intergenic |
| TTAAGAAAGAAGAAACCAAT+GGG | 0.538108 | 7_3:-78694418 | Msa1127180:CDS |
| TAATCCCTGAAAAGGGAGGC+TGG | 0.541253 | 7_3:+78692670 | None:intergenic |
| CCATGTCGCAGAATTACTAA+AGG | 0.544242 | 7_3:-78693346 | Msa1127180:CDS |
| ACGATCACCTCCACACATGA+TGG | 0.544848 | 7_3:+78693464 | None:intergenic |
| ATGCACGTGAACGTGATCAT+TGG | 0.546832 | 7_3:+78695428 | None:intergenic |
| GAAGCTGCTATATGCACCGA+TGG | 0.548227 | 7_3:-78693099 | Msa1127180:CDS |
| AGAGTCATTTGAATCCTGGC+AGG | 0.551210 | 7_3:-78693913 | Msa1127180:CDS |
| GTATGCACACATGTCTCACT+TGG | 0.551229 | 7_3:-78695046 | Msa1127180:CDS |
| GAAACCAATGGGAAAGATGC+CGG | 0.552736 | 7_3:-78694407 | Msa1127180:CDS |
| AAGAAGGAGATGGACAAAAT+GGG | 0.557833 | 7_3:-78695275 | Msa1127180:CDS |
| CTCCGCCAGAAACAATTGCC+TGG | 0.558127 | 7_3:-78695340 | Msa1127180:CDS |
| CCTTTAGTAATTCTGCGACA+TGG | 0.559948 | 7_3:+78693346 | None:intergenic |
| GTGATTAAAGGAACGATACC+AGG | 0.560094 | 7_3:+78695480 | None:intergenic |
| GCCAAATCCGCACGGCAGCA+AGG | 0.565559 | 7_3:-78692797 | Msa1127180:CDS |
| TCTTATGCTGTTGATAAGGA+AGG | 0.566630 | 7_3:-78693535 | Msa1127180:CDS |
| ATTAAGAAAGAAGAAACCAA+TGG | 0.569071 | 7_3:-78694419 | Msa1127180:CDS |
| GATCGTCTGCTCGAAAAGCT+AGG | 0.570026 | 7_3:-78693447 | Msa1127180:CDS |
| TCTCTGTGTATGGCTCCTCC+AGG | 0.571504 | 7_3:+78692876 | None:intergenic |
| TATGCACACATGTCTCACTT+GGG | 0.573102 | 7_3:-78695045 | Msa1127180:CDS |
| CATGATGGACGGGGAGCCAA+AGG | 0.574571 | 7_3:+78693479 | None:intergenic |
| CATTGTTGGTGGGAGATCCA+TGG | 0.578805 | 7_3:-78692715 | Msa1127180:CDS |
| TTCACTGGCCATTCTCTTGG+GGG | 0.579207 | 7_3:-78693579 | Msa1127180:CDS |
| ATCGGTCACTTAATATCTCG+AGG | 0.582626 | 7_3:+78692910 | None:intergenic |
| GGCCAGGCAATTGTTTCTGG+CGG | 0.586577 | 7_3:+78695338 | None:intergenic |
| ACTTTGTGTTTATTACAAAG+TGG | 0.587222 | 7_3:-78695507 | Msa1127180:CDS |
| CATGCTCACCTAAAATCTCA+AGG | 0.588915 | 7_3:-78693621 | Msa1127180:CDS |
| GAGGCTGGTCTTGAATAATA+CGG | 0.591656 | 7_3:+78692685 | None:intergenic |
| AGTTATATGTTTCCGAGAGT+AGG | 0.593280 | 7_3:+78692564 | None:intergenic |
| CATTTGATTCTGAAAGAAGA+GGG | 0.594352 | 7_3:+78692988 | None:intergenic |
| TCACCTCCACACATGATGGA+CGG | 0.595113 | 7_3:+78693468 | None:intergenic |
| AGAGTTGTGGAAGAAGGAGA+TGG | 0.596023 | 7_3:-78695285 | Msa1127180:CDS |
| TGTTTGTAGAGTTGATGAAG+AGG | 0.596553 | 7_3:-78695169 | Msa1127180:CDS |
| TCATTTGATTCTGAAAGAAG+AGG | 0.596751 | 7_3:+78692987 | None:intergenic |
| GGCTCCCCGTCCATCATGTG+TGG | 0.599550 | 7_3:-78693474 | Msa1127180:CDS |
| GCACAGAGACATAGTACCAC+GGG | 0.600168 | 7_3:-78693391 | Msa1127180:CDS |
| CTCCGCCGTAACCTCGTCGA+CGG | 0.603252 | 7_3:+78695317 | None:intergenic |
| AGATGCCGGAGAAAGAAAAG+AGG | 0.605156 | 7_3:-78694393 | Msa1127180:CDS |
| TACCCGGTGGAAGAAGATGA+TGG | 0.607656 | 7_3:+78693033 | None:intergenic |
| AAGCTGCTATATGCACCGAT+GGG | 0.608378 | 7_3:-78693098 | Msa1127180:CDS |
| AGAATCAGTAATTCGCCCAT+CGG | 0.612468 | 7_3:+78693083 | None:intergenic |
| CAATTGCCTGGCCGTCGACG+AGG | 0.614272 | 7_3:-78695328 | Msa1127180:CDS |
| GGGAACCTCTTGAAAAGGTG+TGG | 0.615583 | 7_3:-78694491 | Msa1127180:CDS |
| AAGGAGAGAACTAAGACGAA+AGG | 0.616416 | 7_3:-78692778 | Msa1127180:CDS |
| CATAGATACCTCTATGGACA+AGG | 0.616860 | 7_3:+78693685 | None:intergenic |
| AGTGATGCGGACATTGTTGG+TGG | 0.617441 | 7_3:-78692726 | Msa1127180:CDS |
| GGCTCCTCCAGGTCCATAGG+CGG | 0.617601 | 7_3:+78692887 | None:intergenic |
| CTTACACTTCGTGCCACAAG+AGG | 0.618198 | 7_3:+78692747 | None:intergenic |
| GGTGGAAGAAGATGATGGCT+AGG | 0.619407 | 7_3:+78693038 | None:intergenic |
| AACTAAGACGAAAGGTGCGG+TGG | 0.620457 | 7_3:-78692770 | Msa1127180:CDS |
| AGCCATCATCTTCTTCCACC+GGG | 0.620848 | 7_3:-78693035 | Msa1127180:CDS |
| TGTCCATAGAGGTATCTATG+AGG | 0.623935 | 7_3:-78693682 | Msa1127180:CDS |
| GCATCAATCTCACGTGAGCA+CGG | 0.629640 | 7_3:-78695409 | Msa1127180:CDS |
| TCGGTCACTTAATATCTCGA+GGG | 0.631519 | 7_3:+78692911 | None:intergenic |
| AGATGGACAAAATGGGAACT+GGG | 0.633266 | 7_3:-78695268 | Msa1127180:CDS |
| TTAGATGTCCTTGTCCATAG+AGG | 0.637092 | 7_3:-78693693 | Msa1127180:CDS |
| AATAATACGGACAGATACCA+TGG | 0.637561 | 7_3:+78692698 | None:intergenic |
| GGGGAGCCAAAGGTTACCAC+AGG | 0.637612 | 7_3:+78693489 | None:intergenic |
| TCCCCGTCCATCATGTGTGG+AGG | 0.638035 | 7_3:-78693471 | Msa1127180:CDS |
| TTTACTTGGTTATTAAGACA+AGG | 0.638155 | 7_3:+78693297 | None:intergenic |
| CGATCCGCCTATGGACCTGG+AGG | 0.638363 | 7_3:-78692891 | Msa1127180:CDS |
| CGGTCACTTAATATCTCGAG+GGG | 0.642028 | 7_3:+78692912 | None:intergenic |
| TGATGCTTGTGAGATTGCAG+TGG | 0.646322 | 7_3:-78694339 | Msa1127180:CDS |
| AGAACTCAGCCAAATCCGCA+CGG | 0.648030 | 7_3:-78692805 | Msa1127180:CDS |
| GGAGAATGTAAACAGAGTTG+TGG | 0.651308 | 7_3:-78695298 | Msa1127180:CDS |
| GTTCTCTCCTTGCTGCCGTG+CGG | 0.651475 | 7_3:+78692790 | None:intergenic |
| GGCCGTCGACGAGGTTACGG+CGG | 0.651522 | 7_3:-78695319 | Msa1127180:CDS |
| ACCTCCACACATGATGGACG+GGG | 0.657981 | 7_3:+78693470 | None:intergenic |
| ATGCACACATGTCTCACTTG+GGG | 0.665122 | 7_3:-78695044 | Msa1127180:CDS |
| TACTTGCATGAAAATGCCCG+TGG | 0.685103 | 7_3:+78693375 | None:intergenic |
| TGCACAGAGACATAGTACCA+CGG | 0.687263 | 7_3:-78693392 | Msa1127180:CDS |
| AACTACCAATTCAATGACAG+CGG | 0.687266 | 7_3:-78694237 | Msa1127180:CDS |
| TGTTTAATCCCTGAAAAGGG+AGG | 0.687911 | 7_3:+78692666 | None:intergenic |
| GTGATGCGGACATTGTTGGT+GGG | 0.700714 | 7_3:-78692725 | Msa1127180:CDS |
| AATCTCACGTGAGCACGGTG+AGG | 0.702468 | 7_3:-78695404 | Msa1127180:CDS |
| ATTCCTTGAACGTGACTCCG+CGG | 0.708794 | 7_3:+78693420 | None:intergenic |
| GAGAACTAAGACGAAAGGTG+CGG | 0.711212 | 7_3:-78692773 | Msa1127180:CDS |
| TATTAAGACAAGGATGACTG+CGG | 0.711381 | 7_3:+78693307 | None:intergenic |
| TCACATATGAACCATTCACA+GGG | 0.713581 | 7_3:+78694149 | None:intergenic |
| GGCACGAAGTGTAAGTGATG+CGG | 0.720051 | 7_3:-78692739 | Msa1127180:CDS |
| AAAAGATATAGACCACTACC+CGG | 0.728169 | 7_3:+78693017 | None:intergenic |
| AGATATAGACCACTACCCGG+TGG | 0.732749 | 7_3:+78693020 | None:intergenic |
| TCGAAAAGCTAGGTTTACCG+CGG | 0.741792 | 7_3:-78693437 | Msa1127180:CDS |
| ATATCAACAGATGTTACCCG+AGG | 0.747249 | 7_3:-78693646 | Msa1127180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTACTTATATTTAACAC+CGG | + | chr7_3:78694834-78694853 | None:intergenic | 15.0% |
| !!! | TCATTAAGATTTAAAATCAA+AGG | + | chr7_3:78694947-78694966 | None:intergenic | 15.0% |
| !!! | TTTTTGATCTTAATTCTGTA+TGG | - | chr7_3:78692843-78692862 | Msa1127180:CDS | 20.0% |
| !! | ATGAAATAAACCTTGATATT+GGG | + | chr7_3:78693079-78693098 | None:intergenic | 20.0% |
| !! | TTTATACATTAGGAATGTTT+AGG | - | chr7_3:78693140-78693159 | Msa1127180:intron | 20.0% |
| !! | ATTAAAAATGATAGCAAGTT+TGG | - | chr7_3:78694091-78694110 | Msa1127180:intron | 20.0% |
| !!! | AGATACATTTTTTTTTCCTT+AGG | - | chr7_3:78694361-78694380 | Msa1127180:CDS | 20.0% |
| !!! | GATACATTTTTTTTTCCTTA+GGG | - | chr7_3:78694362-78694381 | Msa1127180:CDS | 20.0% |
| !!! | ATACATTTTTTTTTCCTTAG+GGG | - | chr7_3:78694363-78694382 | Msa1127180:CDS | 20.0% |
| ! | ACTTTGTGTTTATTACAAAG+TGG | - | chr7_3:78692572-78692591 | Msa1127180:CDS | 25.0% |
| ! | CTTTGTGTTTATTACAAAGT+GGG | - | chr7_3:78692573-78692592 | Msa1127180:CDS | 25.0% |
| ! | GATGAAATAAACCTTGATAT+TGG | + | chr7_3:78693080-78693099 | None:intergenic | 25.0% |
| !! | TACAAAAACCTTCATAGTTT+TGG | - | chr7_3:78693178-78693197 | Msa1127180:intron | 25.0% |
| !!! | CATTATTTTTGTACTTTGAG+TGG | - | chr7_3:78693470-78693489 | Msa1127180:CDS | 25.0% |
| !!! | TGCTATGCTAATTTGTATTT+TGG | - | chr7_3:78693548-78693567 | Msa1127180:CDS | 25.0% |
| ! | ATTAAGAAAGAAGAAACCAA+TGG | - | chr7_3:78693660-78693679 | Msa1127180:CDS | 25.0% |
| ! | TTAAGAAAGAAGAAACCAAT+GGG | - | chr7_3:78693661-78693680 | Msa1127180:CDS | 25.0% |
| !!! | TACGAGATATTTTGTTATTC+AGG | - | chr7_3:78693968-78693987 | Msa1127180:intron | 25.0% |
| ! | ATGTTATGTGAATAATCACA+AGG | + | chr7_3:78694057-78694076 | None:intergenic | 25.0% |
| !!! | AGCAAGTTTGGATTTATTTT+TGG | - | chr7_3:78694103-78694122 | Msa1127180:intron | 25.0% |
| ! | GTATCAAAACAATAATTGGT+TGG | + | chr7_3:78694137-78694156 | None:intergenic | 25.0% |
| !!! | AATTATTGTTTTGATACGCA+GGG | - | chr7_3:78694140-78694159 | Msa1127180:CDS | 25.0% |
| ! | TGTTTACACTTTGTGAAATT+GGG | - | chr7_3:78694332-78694351 | Msa1127180:CDS | 25.0% |
| ! | TAAATCTTATGCTGTTGATA+AGG | - | chr7_3:78694540-78694559 | Msa1127180:intron | 25.0% |
| ! | TTTACTTGGTTATTAAGACA+AGG | + | chr7_3:78694785-78694804 | None:intergenic | 25.0% |
| !! | ATTATCTGAAATACTTCATC+CGG | - | chr7_3:78694812-78694831 | Msa1127180:intron | 25.0% |
| ! | AACTACAAAAAGAATATCTC+TGG | + | chr7_3:78694918-78694937 | None:intergenic | 25.0% |
| GCAGTAATAGAAGTGATTAA+AGG | + | chr7_3:78692614-78692633 | None:intergenic | 30.0% | |
| TATGAATCTGTAAAACTTGG+AGG | + | chr7_3:78692714-78692733 | None:intergenic | 30.0% | |
| ! | TCCAAGTTTTACAGATTCAT+AGG | - | chr7_3:78692713-78692732 | Msa1127180:CDS | 30.0% |
| ACCTATGAATCTGTAAAACT+TGG | + | chr7_3:78692717-78692736 | None:intergenic | 30.0% | |
| TCTTAATTCTGTATGGAAAG+AGG | - | chr7_3:78692850-78692869 | Msa1127180:CDS | 30.0% | |
| ATACTCTATTCCCAATATCA+AGG | - | chr7_3:78693066-78693085 | Msa1127180:CDS | 30.0% | |
| ! | GAAAGCATAAAAGGAAATGA+AGG | + | chr7_3:78693102-78693121 | None:intergenic | 30.0% |
| ! | CAAAGACATGAAAGCATAAA+AGG | + | chr7_3:78693111-78693130 | None:intergenic | 30.0% |
| GTGCACTTTCTTTATACATT+AGG | - | chr7_3:78693130-78693149 | Msa1127180:intron | 30.0% | |
| TATCAATGCCAAAACTATGA+AGG | + | chr7_3:78693189-78693208 | None:intergenic | 30.0% | |
| !!! | TCATAGTTTTGGCATTGATA+AGG | - | chr7_3:78693189-78693208 | Msa1127180:intron | 30.0% |
| ! | AGCATAGCAATCCTAATTTT+GGG | + | chr7_3:78693537-78693556 | None:intergenic | 30.0% |
| ! | TAGCATAGCAATCCTAATTT+TGG | + | chr7_3:78693538-78693557 | None:intergenic | 30.0% |
| AACTTCATCAATAGAGAAGA+AGG | - | chr7_3:78693623-78693642 | Msa1127180:CDS | 30.0% | |
| GAAAGAAAAGAGGAAAAGAA+TGG | - | chr7_3:78693696-78693715 | Msa1127180:CDS | 30.0% | |
| AACATGATAAAAACTGACGT+TGG | - | chr7_3:78693807-78693826 | Msa1127180:intron | 30.0% | |
| ACATGATAAAAACTGACGTT+GGG | - | chr7_3:78693808-78693827 | Msa1127180:intron | 30.0% | |
| TTCAGGTATGAAAAATTAGC+AGG | - | chr7_3:78693985-78694004 | Msa1127180:intron | 30.0% | |
| TCAGGTATGAAAAATTAGCA+GGG | - | chr7_3:78693986-78694005 | Msa1127180:intron | 30.0% | |
| CTGCGTATCAAAACAATAAT+TGG | + | chr7_3:78694141-78694160 | None:intergenic | 30.0% | |
| !!! | CAATTATTGTTTTGATACGC+AGG | - | chr7_3:78694139-78694158 | Msa1127180:CDS | 30.0% |
| ACAATTACCTCAAATTGAAC+TGG | + | chr7_3:78694209-78694228 | None:intergenic | 30.0% | |
| AAATTCATCCCTTTAACAAG+AGG | + | chr7_3:78694269-78694288 | None:intergenic | 30.0% | |
| GTGTTTACACTTTGTGAAAT+TGG | - | chr7_3:78694331-78694350 | Msa1127180:CDS | 30.0% | |
| GGTCGTATGTATAAGTAAAA+AGG | + | chr7_3:78694897-78694916 | None:intergenic | 30.0% | |
| ! | CTAGGTGAAAAATTTTCATC+TGG | + | chr7_3:78695026-78695045 | None:intergenic | 30.0% |
| ! | CATTTGATTCTGAAAGAAGA+GGG | + | chr7_3:78695094-78695113 | None:intergenic | 30.0% |
| ! | TCATTTGATTCTGAAAGAAG+AGG | + | chr7_3:78695095-78695114 | None:intergenic | 30.0% |
| TACAAACAGTTGCATATGTT+GGG | + | chr7_3:78695483-78695502 | None:intergenic | 30.0% | |
| TTATTACAAAGTGGGATTCC+TGG | - | chr7_3:78692581-78692600 | Msa1127180:CDS | 35.0% | |
| AAGAAGGAGATGGACAAAAT+GGG | - | chr7_3:78692804-78692823 | Msa1127180:CDS | 35.0% | |
| TGGAAAGAGGAAAAAAAGAG+TGG | - | chr7_3:78692863-78692882 | Msa1127180:CDS | 35.0% | |
| !! | TGTTTGTAGAGTTGATGAAG+AGG | - | chr7_3:78692910-78692929 | Msa1127180:CDS | 35.0% |
| !!! | GTTTTCTAGAATGCTTCGTA+GGG | - | chr7_3:78692988-78693007 | Msa1127180:CDS | 35.0% |
| GCATTTATATGCCACACTAA+AGG | - | chr7_3:78693211-78693230 | Msa1127180:intron | 35.0% | |
| ! | GTGTTTGATACCTGATTTGT+AGG | - | chr7_3:78693331-78693350 | Msa1127180:CDS | 35.0% |
| AAACATGCAATCTTAGAGCA+AGG | + | chr7_3:78693371-78693390 | None:intergenic | 35.0% | |
| ! | TTTGTGACCTGATTGATGAT+CGG | - | chr7_3:78693405-78693424 | Msa1127180:CDS | 35.0% |
| CTATATTCCGATCATCAATC+AGG | + | chr7_3:78693415-78693434 | None:intergenic | 35.0% | |
| TTGAGTGGAATTCAATTGTG+TGG | - | chr7_3:78693485-78693504 | Msa1127180:CDS | 35.0% | |
| GAATGTGTTCACCCAAAATT+AGG | - | chr7_3:78693523-78693542 | Msa1127180:CDS | 35.0% | |
| ATCAATAGAGAAGAAGGAAC+TGG | - | chr7_3:78693629-78693648 | Msa1127180:CDS | 35.0% | |
| ! | CTTTTCCTCTTTTCTTTCTC+CGG | + | chr7_3:78693694-78693713 | None:intergenic | 35.0% |
| AACTACCAATTCAATGACAG+CGG | - | chr7_3:78693842-78693861 | Msa1127180:intron | 35.0% | |
| TCACATATGAACCATTCACA+GGG | + | chr7_3:78693933-78693952 | None:intergenic | 35.0% | |
| CAGGTATGAAAAATTAGCAG+GGG | - | chr7_3:78693987-78694006 | Msa1127180:intron | 35.0% | |
| ! | ATTGAACTGGCTCAAAAAGT+AGG | + | chr7_3:78694196-78694215 | None:intergenic | 35.0% |
| ! | TTTTGAGCCAGTTCAATTTG+AGG | - | chr7_3:78694199-78694218 | Msa1127180:CDS | 35.0% |
| GAGGTAATTGTTACTATTGC+AGG | - | chr7_3:78694218-78694237 | Msa1127180:CDS | 35.0% | |
| ATGCGATTCCTCTTGTTAAA+GGG | - | chr7_3:78694258-78694277 | Msa1127180:CDS | 35.0% | |
| ACCTAAAATCTCAAGGTTCT+CGG | - | chr7_3:78694465-78694484 | Msa1127180:CDS | 35.0% | |
| ! | TCTTATGCTGTTGATAAGGA+AGG | - | chr7_3:78694544-78694563 | Msa1127180:intron | 35.0% |
| ACAGGAAGCAAAGAAGAAAT+AGG | + | chr7_3:78694575-78694594 | None:intergenic | 35.0% | |
| TATTTCTTCTTTGCTTCCTG+TGG | - | chr7_3:78694574-78694593 | Msa1127180:intron | 35.0% | |
| TATTAAGACAAGGATGACTG+CGG | + | chr7_3:78694775-78694794 | None:intergenic | 35.0% | |
| AGATAATGTCGCACTTTACT+TGG | + | chr7_3:78694799-78694818 | None:intergenic | 35.0% | |
| AAAAGATATAGACCACTACC+CGG | + | chr7_3:78695065-78695084 | None:intergenic | 35.0% | |
| ! | AGTGGTCTATATCTTTTGAG+TGG | - | chr7_3:78695068-78695087 | Msa1127180:CDS | 35.0% |
| AATAATACGGACAGATACCA+TGG | + | chr7_3:78695384-78695403 | None:intergenic | 35.0% | |
| GTCTGTTTAATCCCTGAAAA+GGG | + | chr7_3:78695419-78695438 | None:intergenic | 35.0% | |
| TGTCTGTTTAATCCCTGAAA+AGG | + | chr7_3:78695420-78695439 | None:intergenic | 35.0% | |
| !! | TTTTCAGGGATTAAACAGAC+AGG | - | chr7_3:78695419-78695438 | Msa1127180:CDS | 35.0% |
| AGTCCTTGAAAAGGTTTAGT+AGG | - | chr7_3:78695447-78695466 | Msa1127180:CDS | 35.0% | |
| ! | AAGCCTACTAAACCTTTTCA+AGG | + | chr7_3:78695453-78695472 | None:intergenic | 35.0% |
| CTACAAACAGTTGCATATGT+TGG | + | chr7_3:78695484-78695503 | None:intergenic | 35.0% | |
| GTGATTAAAGGAACGATACC+AGG | + | chr7_3:78692602-78692621 | None:intergenic | 40.0% | |
| GGAGAATGTAAACAGAGTTG+TGG | - | chr7_3:78692781-78692800 | Msa1127180:CDS | 40.0% | |
| GTAAACAGAGTTGTGGAAGA+AGG | - | chr7_3:78692788-78692807 | Msa1127180:CDS | 40.0% | |
| GAAGAAGGAGATGGACAAAA+TGG | - | chr7_3:78692803-78692822 | Msa1127180:CDS | 40.0% | |
| AGATGGACAAAATGGGAACT+GGG | - | chr7_3:78692811-78692830 | Msa1127180:CDS | 40.0% | |
| ! | AAATGGGAACTGGGTTTTCA+AGG | - | chr7_3:78692820-78692839 | Msa1127180:CDS | 40.0% |
| !!! | CGTTTTCTAGAATGCTTCGT+AGG | - | chr7_3:78692987-78693006 | Msa1127180:CDS | 40.0% |
| TATGCACACATGTCTCACTT+GGG | - | chr7_3:78693034-78693053 | Msa1127180:CDS | 40.0% | |
| ! | ACCTGATTTGTAGGCTTTGT+TGG | - | chr7_3:78693340-78693359 | Msa1127180:CDS | 40.0% |
| TCCAACAAAGCCTACAAATC+AGG | + | chr7_3:78693344-78693363 | None:intergenic | 40.0% | |
| ! | GATCGGAATATAGTTCTGCT+AGG | - | chr7_3:78693422-78693441 | Msa1127180:CDS | 40.0% |
| GTTCTGCTAGGAAGATATGT+AGG | - | chr7_3:78693434-78693453 | Msa1127180:CDS | 40.0% | |
| AGGAAGATATGTAGGTCAGT+AGG | - | chr7_3:78693442-78693461 | Msa1127180:CDS | 40.0% | |
| AAGATATGTAGGTCAGTAGG+TGG | - | chr7_3:78693445-78693464 | Msa1127180:CDS | 40.0% | |
| AGATATGTAGGTCAGTAGGT+GGG | - | chr7_3:78693446-78693465 | Msa1127180:CDS | 40.0% | |
| TTGGAACTGTGAATTTAGCC+AGG | - | chr7_3:78693567-78693586 | Msa1127180:CDS | 40.0% | |
| TGGAACTGTGAATTTAGCCA+GGG | - | chr7_3:78693568-78693587 | Msa1127180:CDS | 40.0% | |
| AACAACCGCTGTCATTGAAT+TGG | + | chr7_3:78693850-78693869 | None:intergenic | 40.0% | |
| GTCACATATGAACCATTCAC+AGG | + | chr7_3:78693934-78693953 | None:intergenic | 40.0% | |
| GTTCAGAGTCATTTGAATCC+TGG | - | chr7_3:78694162-78694181 | Msa1127180:CDS | 40.0% | |
| GATGCGATTCCTCTTGTTAA+AGG | - | chr7_3:78694257-78694276 | Msa1127180:CDS | 40.0% | |
| TTAGATGTCCTTGTCCATAG+AGG | - | chr7_3:78694386-78694405 | Msa1127180:CDS | 40.0% | |
| CATAGATACCTCTATGGACA+AGG | + | chr7_3:78694397-78694416 | None:intergenic | 40.0% | |
| !! | TGTCCATAGAGGTATCTATG+AGG | - | chr7_3:78694397-78694416 | Msa1127180:CDS | 40.0% |
| GTATCTATGAGGCTGCTAAA+GGG | - | chr7_3:78694408-78694427 | Msa1127180:CDS | 40.0% | |
| ATATCAACAGATGTTACCCG+AGG | - | chr7_3:78694433-78694452 | Msa1127180:CDS | 40.0% | |
| !! | TTTTAGGTGAGCATGAACCT+CGG | + | chr7_3:78694453-78694472 | None:intergenic | 40.0% |
| CATGCTCACCTAAAATCTCA+AGG | - | chr7_3:78694458-78694477 | Msa1127180:CDS | 40.0% | |
| CCTAAAATCTCAAGGTTCTC+GGG | - | chr7_3:78694466-78694485 | Msa1127180:CDS | 40.0% | |
| GTAATTCTGCGACATGGTTA+GGG | + | chr7_3:78694730-78694749 | None:intergenic | 40.0% | |
| AGTAATTCTGCGACATGGTT+AGG | + | chr7_3:78694731-78694750 | None:intergenic | 40.0% | |
| CCTTTAGTAATTCTGCGACA+TGG | + | chr7_3:78694736-78694755 | None:intergenic | 40.0% | |
| CCATGTCGCAGAATTACTAA+AGG | - | chr7_3:78694733-78694752 | Msa1127180:intron | 40.0% | |
| AGAATCAGTAATTCGCCCAT+CGG | + | chr7_3:78694999-78695018 | None:intergenic | 40.0% | |
| TCGGTCACTTAATATCTCGA+GGG | + | chr7_3:78695171-78695190 | None:intergenic | 40.0% | |
| ATCGGTCACTTAATATCTCG+AGG | + | chr7_3:78695172-78695191 | None:intergenic | 40.0% | |
| CATGTCATGATCTCTGTGTA+TGG | + | chr7_3:78695216-78695235 | None:intergenic | 40.0% | |
| AAGGAGAGAACTAAGACGAA+AGG | - | chr7_3:78695301-78695320 | Msa1127180:CDS | 40.0% | |
| !! | GAGGCTGGTCTTGAATAATA+CGG | + | chr7_3:78695397-78695416 | None:intergenic | 40.0% |
| TGTTTAATCCCTGAAAAGGG+AGG | + | chr7_3:78695416-78695435 | None:intergenic | 40.0% | |
| CAGGTAGAAAGTCCTTGAAA+AGG | - | chr7_3:78695438-78695457 | Msa1127180:CDS | 40.0% | |
| ATGCACGTGAACGTGATCAT+TGG | + | chr7_3:78692654-78692673 | None:intergenic | 45.0% | |
| AGAGTTGTGGAAGAAGGAGA+TGG | - | chr7_3:78692794-78692813 | Msa1127180:CDS | 45.0% | |
| GAGATGGACAAAATGGGAAC+TGG | - | chr7_3:78692810-78692829 | Msa1127180:CDS | 45.0% | |
| GTATGCACACATGTCTCACT+TGG | - | chr7_3:78693033-78693052 | Msa1127180:CDS | 45.0% | |
| ATGCACACATGTCTCACTTG+GGG | - | chr7_3:78693035-78693054 | Msa1127180:CDS | 45.0% | |
| CATGTCTCACTTGGGGAATT+TGG | - | chr7_3:78693042-78693061 | Msa1127180:CDS | 45.0% | |
| GATATGTAGGTCAGTAGGTG+GGG | - | chr7_3:78693447-78693466 | Msa1127180:CDS | 45.0% | |
| GAAACCAATGGGAAAGATGC+CGG | - | chr7_3:78693672-78693691 | Msa1127180:CDS | 45.0% | |
| AGATGCCGGAGAAAGAAAAG+AGG | - | chr7_3:78693686-78693705 | Msa1127180:CDS | 45.0% | |
| TGATGCTTGTGAGATTGCAG+TGG | - | chr7_3:78693740-78693759 | Msa1127180:intron | 45.0% | |
| TGTGAGATTGCAGTGGTTGA+AGG | - | chr7_3:78693747-78693766 | Msa1127180:intron | 45.0% | |
| AACTGACGTTGGGTCTTTGA+TGG | - | chr7_3:78693818-78693837 | Msa1127180:intron | 45.0% | |
| CAAGTTCTTCACCCTGTGAA+TGG | - | chr7_3:78693919-78693938 | Msa1127180:CDS | 45.0% | |
| AGAGTCATTTGAATCCTGGC+AGG | - | chr7_3:78694166-78694185 | Msa1127180:CDS | 45.0% | |
| AAAAAGTAGGTTTGCCTGCC+AGG | + | chr7_3:78694183-78694202 | None:intergenic | 45.0% | |
| ACAAGGACATCTAACCCCTA+AGG | + | chr7_3:78694380-78694399 | None:intergenic | 45.0% | |
| CAGCCTCATAGATACCTCTA+TGG | + | chr7_3:78694403-78694422 | None:intergenic | 45.0% | |
| GGTATCTATGAGGCTGCTAA+AGG | - | chr7_3:78694407-78694426 | Msa1127180:CDS | 45.0% | |
| TTTAGGTGAGCATGAACCTC+GGG | + | chr7_3:78694452-78694471 | None:intergenic | 45.0% | |
| ! | CCCGAGAACCTTGAGATTTT+AGG | + | chr7_3:78694469-78694488 | None:intergenic | 45.0% |
| CAAGAGAATGGCCAGTGAAA+CGG | + | chr7_3:78694499-78694518 | None:intergenic | 45.0% | |
| GTTTCACTGGCCATTCTCTT+GGG | - | chr7_3:78694498-78694517 | Msa1127180:intron | 45.0% | |
| TTTCACTGGCCATTCTCTTG+GGG | - | chr7_3:78694499-78694518 | Msa1127180:intron | 45.0% | |
| TTGCTTCCTGTGGTAACCTT+TGG | - | chr7_3:78694584-78694603 | Msa1127180:intron | 45.0% | |
| TCGAAAAGCTAGGTTTACCG+CGG | - | chr7_3:78694642-78694661 | Msa1127180:intron | 45.0% | |
| TGCACAGAGACATAGTACCA+CGG | - | chr7_3:78694687-78694706 | Msa1127180:intron | 45.0% | |
| TACTTGCATGAAAATGCCCG+TGG | + | chr7_3:78694707-78694726 | None:intergenic | 45.0% | |
| ! | AAGCTGCTATATGCACCGAT+GGG | - | chr7_3:78694981-78695000 | Msa1127180:CDS | 45.0% |
| TAGCCATCATCTTCTTCCAC+CGG | - | chr7_3:78695043-78695062 | Msa1127180:CDS | 45.0% | |
| !! | CCAATTTAGCAGCTTTGAGC+TGG | + | chr7_3:78695127-78695146 | None:intergenic | 45.0% |
| CCAGCTCAAAGCTGCTAAAT+TGG | - | chr7_3:78695124-78695143 | Msa1127180:CDS | 45.0% | |
| CTTAATATCTCGAGGGGATG+TGG | + | chr7_3:78695164-78695183 | None:intergenic | 45.0% | |
| CGGTCACTTAATATCTCGAG+GGG | + | chr7_3:78695170-78695189 | None:intergenic | 45.0% | |
| GAGAACTAAGACGAAAGGTG+CGG | - | chr7_3:78695306-78695325 | Msa1127180:CDS | 45.0% | |
| GTAAGTGATGCGGACATTGT+TGG | - | chr7_3:78695350-78695369 | Msa1127180:CDS | 45.0% | |
| GTGTTCTTGCTTCCTACTCT+CGG | - | chr7_3:78695503-78695522 | Msa1127180:CDS | 45.0% | |
| GCATCAATCTCACGTGAGCA+CGG | - | chr7_3:78692670-78692689 | Msa1127180:CDS | 50.0% | |
| CACTGTACACGCCTTTAGTG+TGG | + | chr7_3:78693225-78693244 | None:intergenic | 50.0% | |
| AGCCAGGGAACCTCTTGAAA+AGG | - | chr7_3:78693583-78693602 | Msa1127180:CDS | 50.0% | |
| !! | CACCTTTTCAAGAGGTTCCC+TGG | + | chr7_3:78693588-78693607 | None:intergenic | 50.0% |
| GGGAACCTCTTGAAAAGGTG+TGG | - | chr7_3:78693588-78693607 | Msa1127180:CDS | 50.0% | |
| !! | GCAGACCACACCTTTTCAAG+AGG | + | chr7_3:78693596-78693615 | None:intergenic | 50.0% |
| TTCTCCGGCATCTTTCCCAT+TGG | + | chr7_3:78693679-78693698 | None:intergenic | 50.0% | |
| CGTTTCACTGGCCATTCTCT+TGG | - | chr7_3:78694497-78694516 | Msa1127180:CDS | 50.0% | |
| TTCACTGGCCATTCTCTTGG+GGG | - | chr7_3:78694500-78694519 | Msa1127180:intron | 50.0% | |
| ! | TCACCTCCACACATGATGGA+CGG | + | chr7_3:78694614-78694633 | None:intergenic | 50.0% |
| ACGATCACCTCCACACATGA+TGG | + | chr7_3:78694618-78694637 | None:intergenic | 50.0% | |
| GATCGTCTGCTCGAAAAGCT+AGG | - | chr7_3:78694632-78694651 | Msa1127180:intron | 50.0% | |
| ATTCCTTGAACGTGACTCCG+CGG | + | chr7_3:78694662-78694681 | None:intergenic | 50.0% | |
| GCACAGAGACATAGTACCAC+GGG | - | chr7_3:78694688-78694707 | Msa1127180:intron | 50.0% | |
| ACAAGGATGACTGCGGAAAC+TGG | + | chr7_3:78694768-78694787 | None:intergenic | 50.0% | |
| GAAGCTGCTATATGCACCGA+TGG | - | chr7_3:78694980-78694999 | Msa1127180:CDS | 50.0% | |
| ! | GGTGGAAGAAGATGATGGCT+AGG | + | chr7_3:78695044-78695063 | None:intergenic | 50.0% |
| AGCCATCATCTTCTTCCACC+GGG | - | chr7_3:78695044-78695063 | Msa1127180:CDS | 50.0% | |
| TACCCGGTGGAAGAAGATGA+TGG | + | chr7_3:78695049-78695068 | None:intergenic | 50.0% | |
| AGATATAGACCACTACCCGG+TGG | + | chr7_3:78695062-78695081 | None:intergenic | 50.0% | |
| TTAAGTGACCGATCCGCCTA+TGG | - | chr7_3:78695179-78695198 | Msa1127180:CDS | 50.0% | |
| GCTGAGTTCTTGGCGAATCA+CGG | + | chr7_3:78695264-78695283 | None:intergenic | 50.0% | |
| TGCGGATTTGGCTGAGTTCT+TGG | + | chr7_3:78695274-78695293 | None:intergenic | 50.0% | |
| AGAACTCAGCCAAATCCGCA+CGG | - | chr7_3:78695274-78695293 | Msa1127180:CDS | 50.0% | |
| ! | AACTAAGACGAAAGGTGCGG+TGG | - | chr7_3:78695309-78695328 | Msa1127180:CDS | 50.0% |
| CTTACACTTCGTGCCACAAG+AGG | + | chr7_3:78695335-78695354 | None:intergenic | 50.0% | |
| GGCACGAAGTGTAAGTGATG+CGG | - | chr7_3:78695340-78695359 | Msa1127180:CDS | 50.0% | |
| AGTGATGCGGACATTGTTGG+TGG | - | chr7_3:78695353-78695372 | Msa1127180:CDS | 50.0% | |
| GTGATGCGGACATTGTTGGT+GGG | - | chr7_3:78695354-78695373 | Msa1127180:CDS | 50.0% | |
| ! | CATTGTTGGTGGGAGATCCA+TGG | - | chr7_3:78695364-78695383 | Msa1127180:CDS | 50.0% |
| ! | AAGACCAGCCTCCCTTTTCA+GGG | - | chr7_3:78695405-78695424 | Msa1127180:CDS | 50.0% |
| TAATCCCTGAAAAGGGAGGC+TGG | + | chr7_3:78695412-78695431 | None:intergenic | 50.0% | |
| AATCTCACGTGAGCACGGTG+AGG | - | chr7_3:78692675-78692694 | Msa1127180:CDS | 55.0% | |
| CTCCGCCAGAAACAATTGCC+TGG | - | chr7_3:78692739-78692758 | Msa1127180:CDS | 55.0% | |
| !! | GGCCAGGCAATTGTTTCTGG+CGG | + | chr7_3:78692744-78692763 | None:intergenic | 55.0% |
| GACGGCCAGGCAATTGTTTC+TGG | + | chr7_3:78692747-78692766 | None:intergenic | 55.0% | |
| CGGGCAACTTTCCGTTTCAC+TGG | - | chr7_3:78694485-78694504 | Msa1127180:CDS | 55.0% | |
| CCAAGCTTCCCCCAAGAGAA+TGG | + | chr7_3:78694511-78694530 | None:intergenic | 55.0% | |
| CCATTCTCTTGGGGGAAGCT+TGG | - | chr7_3:78694508-78694527 | Msa1127180:intron | 55.0% | |
| !! | ACCTCCACACATGATGGACG+GGG | + | chr7_3:78694612-78694631 | None:intergenic | 55.0% |
| !! | CACCTCCACACATGATGGAC+GGG | + | chr7_3:78694613-78694632 | None:intergenic | 55.0% |
| TTACCGCGGAGTCACGTTCA+AGG | - | chr7_3:78694656-78694675 | Msa1127180:intron | 55.0% | |
| CATCTTCTTCCACCGGGTAG+TGG | - | chr7_3:78695050-78695069 | Msa1127180:CDS | 55.0% | |
| TATGGCTCCTCCAGGTCCAT+AGG | + | chr7_3:78695198-78695217 | None:intergenic | 55.0% | |
| TCTCTGTGTATGGCTCCTCC+AGG | + | chr7_3:78695206-78695225 | None:intergenic | 55.0% | |
| ! | CAAGACCAGCCTCCCTTTTC+AGG | - | chr7_3:78695404-78695423 | Msa1127180:CDS | 55.0% |
| GGGGAGCCAAAGGTTACCAC+AGG | + | chr7_3:78694593-78694612 | None:intergenic | 60.0% | |
| !! | CATGATGGACGGGGAGCCAA+AGG | + | chr7_3:78694603-78694622 | None:intergenic | 60.0% |
| TCCCCGTCCATCATGTGTGG+AGG | - | chr7_3:78694608-78694627 | Msa1127180:intron | 60.0% | |
| CTCCAGGTCCATAGGCGGAT+CGG | + | chr7_3:78695190-78695209 | None:intergenic | 60.0% | |
| TCCTTGCTGCCGTGCGGATT+TGG | + | chr7_3:78695286-78695305 | None:intergenic | 60.0% | |
| GTTCTCTCCTTGCTGCCGTG+CGG | + | chr7_3:78695292-78695311 | None:intergenic | 60.0% | |
| ! | AAAGGTGCGGTGGCCTCTTG+TGG | - | chr7_3:78695319-78695338 | Msa1127180:CDS | 60.0% |
| CAATTGCCTGGCCGTCGACG+AGG | - | chr7_3:78692751-78692770 | Msa1127180:CDS | 65.0% | |
| CCTGGCCGTCGACGAGGTTA+CGG | - | chr7_3:78692757-78692776 | Msa1127180:CDS | 65.0% | |
| CTCCGCCGTAACCTCGTCGA+CGG | + | chr7_3:78692765-78692784 | None:intergenic | 65.0% | |
| GGCTCCCCGTCCATCATGTG+TGG | - | chr7_3:78694605-78694624 | Msa1127180:intron | 65.0% | |
| GACCGATCCGCCTATGGACC+TGG | - | chr7_3:78695185-78695204 | Msa1127180:CDS | 65.0% | |
| CGATCCGCCTATGGACCTGG+AGG | - | chr7_3:78695188-78695207 | Msa1127180:CDS | 65.0% | |
| GGCTCCTCCAGGTCCATAGG+CGG | + | chr7_3:78695195-78695214 | None:intergenic | 65.0% | |
| GCCAAATCCGCACGGCAGCA+AGG | - | chr7_3:78695282-78695301 | Msa1127180:CDS | 65.0% | |
| CCGTAACCTCGTCGACGGCC+AGG | + | chr7_3:78692760-78692779 | None:intergenic | 70.0% | |
| GGCCGTCGACGAGGTTACGG+CGG | - | chr7_3:78692760-78692779 | Msa1127180:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 78692566 | 78695535 | 78692566 | ID=Msa1127180;Name=Msa1127180 |
| chr7_3 | mRNA | 78692566 | 78695535 | 78692566 | ID=Msa1127180-mRNA-1;Parent=Msa1127180;Name=Msa1127180-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.75|0.8|5|0|664 |
| chr7_3 | exon | 78694978 | 78695535 | 78694978 | ID=Msa1127180-mRNA-1:exon:22100;Parent=Msa1127180-mRNA-1 |
| chr7_3 | exon | 78694112 | 78694516 | 78694112 | ID=Msa1127180-mRNA-1:exon:22099;Parent=Msa1127180-mRNA-1 |
| chr7_3 | exon | 78693881 | 78693940 | 78693881 | ID=Msa1127180-mRNA-1:exon:22098;Parent=Msa1127180-mRNA-1 |
| chr7_3 | exon | 78693302 | 78693718 | 78693302 | ID=Msa1127180-mRNA-1:exon:22097;Parent=Msa1127180-mRNA-1 |
| chr7_3 | exon | 78692566 | 78693120 | 78692566 | ID=Msa1127180-mRNA-1:exon:22096;Parent=Msa1127180-mRNA-1 |
| chr7_3 | CDS | 78694978 | 78695535 | 78694978 | ID=Msa1127180-mRNA-1:cds;Parent=Msa1127180-mRNA-1 |
| chr7_3 | CDS | 78694112 | 78694516 | 78694112 | ID=Msa1127180-mRNA-1:cds;Parent=Msa1127180-mRNA-1 |
| chr7_3 | CDS | 78693881 | 78693940 | 78693881 | ID=Msa1127180-mRNA-1:cds;Parent=Msa1127180-mRNA-1 |
| chr7_3 | CDS | 78693302 | 78693718 | 78693302 | ID=Msa1127180-mRNA-1:cds;Parent=Msa1127180-mRNA-1 |
| chr7_3 | CDS | 78692566 | 78693120 | 78692566 | ID=Msa1127180-mRNA-1:cds;Parent=Msa1127180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
