Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362010 | XP_039684274.1 | 91.004 | 667 | 41 | 5 | 1 | 664 | 1 | 651 | 0.0 | 1164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362010 | sp|F4HXL0|PLIP2_ARATH | 52.263 | 729 | 247 | 19 | 1 | 659 | 1 | 698 | 0.0 | 618 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362010 | G7KSR9 | 90.855 | 667 | 47 | 5 | 1 | 664 | 1 | 656 | 0.0 | 1160 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1041150 | Msa1362010 | 0.942696 | 4.543954e-102 | -8.615850e-47 |
| Msa1082310 | Msa1362010 | 0.822305 | 2.543243e-53 | -8.615850e-47 |
| Msa1127180 | Msa1362010 | 0.995917 | 2.541303e-221 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362010 | MtrunA17_Chr7g0269851 | 88.389 | 689 | 51 | 6 | 1 | 664 | 1 | 685 | 0.0 | 1157 |
| Msa1362010 | MtrunA17_Chr1g0194901 | 59.748 | 713 | 204 | 16 | 1 | 659 | 1 | 684 | 0.0 | 779 |
| Msa1362010 | MtrunA17_Chr7g0275571 | 41.652 | 581 | 262 | 14 | 73 | 601 | 113 | 668 | 8.13e-127 | 391 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1362010 | AT1G02660.1 | 52.263 | 729 | 247 | 19 | 1 | 659 | 1 | 698 | 0.0 | 618 |
| Msa1362010 | AT3G62590.1 | 51.223 | 613 | 219 | 9 | 68 | 659 | 72 | 625 | 0.0 | 544 |
| Msa1362010 | AT3G61680.2 | 46.729 | 535 | 242 | 11 | 83 | 600 | 120 | 628 | 1.38e-145 | 438 |
| Msa1362010 | AT3G61680.1 | 46.729 | 535 | 242 | 11 | 83 | 600 | 120 | 628 | 1.38e-145 | 438 |
| Msa1362010 | AT3G61680.3 | 46.729 | 535 | 242 | 11 | 83 | 600 | 120 | 628 | 1.38e-145 | 438 |
Find 153 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACGGCCAGGCAATTGTTTC+TGG | 0.131284 | tig0017690:+152067 | None:intergenic |
| CATGTCTCACTTGGGGAATT+TGG | 0.213240 | tig0017690:-151769 | Msa1362010:CDS |
| TCCTTGCTGCCGTGCGGATT+TGG | 0.226066 | tig0017690:+149528 | None:intergenic |
| TGCGGATTTGGCTGAGTTCT+TGG | 0.237935 | tig0017690:+149540 | None:intergenic |
| CGTTTCACTGGCCATTCTCT+TGG | 0.258914 | tig0017690:-150314 | Msa1362010:CDS |
| CCAGCTCAAAGCTGCTAAAT+TGG | 0.265066 | tig0017690:-149687 | Msa1362010:CDS |
| CAAAGACATGAAAGCATAAA+AGG | 0.269225 | tig0017690:+151703 | None:intergenic |
| GATGAAATAAACCTTGATAT+TGG | 0.297573 | tig0017690:+151734 | None:intergenic |
| GAAGAAGGAGATGGACAAAA+TGG | 0.299306 | tig0017690:-152008 | Msa1362010:CDS |
| AGTAATTCTGCGACATGGTT+AGG | 0.309991 | tig0017690:+150083 | None:intergenic |
| GTTTCACTGGCCATTCTCTT+GGG | 0.310775 | tig0017690:-150313 | Msa1362010:CDS |
| TTGCTTCCTGTGGTAACCTT+TGG | 0.325594 | tig0017690:-150227 | Msa1362010:CDS |
| ATGAAATAAACCTTGATATT+GGG | 0.350525 | tig0017690:+151735 | None:intergenic |
| ACAGGAAGCAAAGAAGAAAT+AGG | 0.368214 | tig0017690:+150239 | None:intergenic |
| AGTCCTTGAAAAGGTTTAGT+AGG | 0.369572 | tig0017690:-149364 | Msa1362010:CDS |
| AACTGACGTTGGGTCTTTGA+TGG | 0.377743 | tig0017690:-150993 | Msa1362010:CDS |
| TTATTACAAAGTGGGATTCC+TGG | 0.377761 | tig0017690:-152230 | Msa1362010:CDS |
| ACAAGGATGACTGCGGAAAC+TGG | 0.384297 | tig0017690:+150046 | None:intergenic |
| GCAGTAATAGAAGTGATTAA+AGG | 0.396032 | tig0017690:+152200 | None:intergenic |
| TAAATCTTATGCTGTTGATA+AGG | 0.405800 | tig0017690:-150271 | Msa1362010:CDS |
| ACCTAAAATCTCAAGGTTCT+CGG | 0.414863 | tig0017690:-150346 | Msa1362010:CDS |
| TGTCTGTTTAATCCCTGAAA+AGG | 0.415869 | tig0017690:+149394 | None:intergenic |
| CGGGCAACTTTCCGTTTCAC+TGG | 0.425212 | tig0017690:-150326 | Msa1362010:CDS |
| AACAACCGCTGTCATTGAAT+TGG | 0.425475 | tig0017690:+150964 | None:intergenic |
| GAGATGGACAAAATGGGAAC+TGG | 0.438740 | tig0017690:-152001 | Msa1362010:CDS |
| CTTAATATCTCGAGGGGATG+TGG | 0.443615 | tig0017690:+149650 | None:intergenic |
| TTCTCCGGCATCTTTCCCAT+TGG | 0.445792 | tig0017690:+151135 | None:intergenic |
| CCTGGCCGTCGACGAGGTTA+CGG | 0.447816 | tig0017690:-152054 | Msa1362010:CDS |
| ACAATTACCTCAAATTGAAC+TGG | 0.447991 | tig0017690:+150605 | None:intergenic |
| CAGCCTCATAGATACCTCTA+TGG | 0.448318 | tig0017690:+150411 | None:intergenic |
| CAAGTTCTTCACCCTGTGAA+TGG | 0.449149 | tig0017690:-150892 | Msa1362010:CDS |
| TGTGAGATTGCAGTGGTTGA+AGG | 0.449691 | tig0017690:-151064 | Msa1362010:CDS |
| GTAATTCTGCGACATGGTTA+GGG | 0.460593 | tig0017690:+150084 | None:intergenic |
| CCTAAAATCTCAAGGTTCTC+GGG | 0.463443 | tig0017690:-150345 | Msa1362010:CDS |
| ATCAATAGAGAAGAAGGAAC+TGG | 0.468428 | tig0017690:-151182 | Msa1362010:CDS |
| ATACTCTATTCCCAATATCA+AGG | 0.470253 | tig0017690:-151745 | Msa1362010:CDS |
| TTTCACTGGCCATTCTCTTG+GGG | 0.474247 | tig0017690:-150312 | Msa1362010:CDS |
| CCAATTTAGCAGCTTTGAGC+TGG | 0.478041 | tig0017690:+149687 | None:intergenic |
| CTACAAACAGTTGCATATGT+TGG | 0.479518 | tig0017690:+149330 | None:intergenic |
| GACCGATCCGCCTATGGACC+TGG | 0.482864 | tig0017690:-149626 | Msa1362010:CDS |
| CCGTAACCTCGTCGACGGCC+AGG | 0.484027 | tig0017690:+152054 | None:intergenic |
| TACAAACAGTTGCATATGTT+GGG | 0.484145 | tig0017690:+149331 | None:intergenic |
| TATGAATCTGTAAAACTTGG+AGG | 0.485150 | tig0017690:+152100 | None:intergenic |
| AGCCAGGGAACCTCTTGAAA+AGG | 0.486455 | tig0017690:-151228 | Msa1362010:CDS |
| TCTTAATTCTGTATGGAAAG+AGG | 0.488435 | tig0017690:-151961 | Msa1362010:CDS |
| CATGTCATGATCTCTGTGTA+TGG | 0.489901 | tig0017690:+149598 | None:intergenic |
| GTATCTATGAGGCTGCTAAA+GGG | 0.492305 | tig0017690:-150403 | Msa1362010:CDS |
| CACCTCCACACATGATGGAC+GGG | 0.493139 | tig0017690:+150201 | None:intergenic |
| TTAAGTGACCGATCCGCCTA+TGG | 0.498782 | tig0017690:-149632 | Msa1362010:CDS |
| GTAAACAGAGTTGTGGAAGA+AGG | 0.499077 | tig0017690:-152023 | Msa1362010:CDS |
| ACCTATGAATCTGTAAAACT+TGG | 0.499685 | tig0017690:+152097 | None:intergenic |
| GTTCAGAGTCATTTGAATCC+TGG | 0.500446 | tig0017690:-150649 | Msa1362010:CDS |
| CAAGAGAATGGCCAGTGAAA+CGG | 0.500612 | tig0017690:+150315 | None:intergenic |
| TATTTCTTCTTTGCTTCCTG+TGG | 0.504548 | tig0017690:-150237 | Msa1362010:CDS |
| GAAAGCATAAAAGGAAATGA+AGG | 0.504951 | tig0017690:+151712 | None:intergenic |
| GGTATCTATGAGGCTGCTAA+AGG | 0.505259 | tig0017690:-150404 | Msa1362010:CDS |
| GTGTTCTTGCTTCCTACTCT+CGG | 0.506196 | tig0017690:-149308 | Msa1362010:CDS |
| CAGGTAGAAAGTCCTTGAAA+AGG | 0.511559 | tig0017690:-149373 | Msa1362010:CDS |
| GCTGAGTTCTTGGCGAATCA+CGG | 0.511618 | tig0017690:+149550 | None:intergenic |
| GAAAGAAAAGAGGAAAAGAA+TGG | 0.514106 | tig0017690:-151115 | Msa1362010:CDS |
| AAAGGTGCGGTGGCCTCTTG+TGG | 0.515177 | tig0017690:-149492 | Msa1362010:CDS |
| TATGGCTCCTCCAGGTCCAT+AGG | 0.518076 | tig0017690:+149616 | None:intergenic |
| CTTTGTGTTTATTACAAAGT+GGG | 0.518264 | tig0017690:-152238 | Msa1362010:CDS |
| GTCTGTTTAATCCCTGAAAA+GGG | 0.519128 | tig0017690:+149395 | None:intergenic |
| GTCACATATGAACCATTCAC+AGG | 0.527693 | tig0017690:+150880 | None:intergenic |
| AACTTCATCAATAGAGAAGA+AGG | 0.527755 | tig0017690:-151188 | Msa1362010:CDS |
| TAGCCATCATCTTCTTCCAC+CGG | 0.535478 | tig0017690:-149768 | Msa1362010:CDS |
| GTAAGTGATGCGGACATTGT+TGG | 0.536188 | tig0017690:-149461 | Msa1362010:CDS |
| TTTAGGTGAGCATGAACCTC+GGG | 0.536388 | tig0017690:+150362 | None:intergenic |
| CTCCAGGTCCATAGGCGGAT+CGG | 0.536666 | tig0017690:+149624 | None:intergenic |
| TTAAGAAAGAAGAAACCAAT+GGG | 0.538108 | tig0017690:-151150 | Msa1362010:CDS |
| TAATCCCTGAAAAGGGAGGC+TGG | 0.541253 | tig0017690:+149402 | None:intergenic |
| CCATGTCGCAGAATTACTAA+AGG | 0.544242 | tig0017690:-150078 | Msa1362010:CDS |
| ACGATCACCTCCACACATGA+TGG | 0.544848 | tig0017690:+150196 | None:intergenic |
| ATGCACGTGAACGTGATCAT+TGG | 0.546832 | tig0017690:+152160 | None:intergenic |
| GAAGCTGCTATATGCACCGA+TGG | 0.548227 | tig0017690:-149831 | Msa1362010:CDS |
| AGAGTCATTTGAATCCTGGC+AGG | 0.551210 | tig0017690:-150645 | Msa1362010:CDS |
| GTATGCACACATGTCTCACT+TGG | 0.551229 | tig0017690:-151778 | Msa1362010:CDS |
| GAAACCAATGGGAAAGATGC+CGG | 0.552736 | tig0017690:-151139 | Msa1362010:CDS |
| AAGAAGGAGATGGACAAAAT+GGG | 0.557833 | tig0017690:-152007 | Msa1362010:CDS |
| CTCCGCCAGAAACAATTGCC+TGG | 0.558127 | tig0017690:-152072 | Msa1362010:CDS |
| CCTTTAGTAATTCTGCGACA+TGG | 0.559948 | tig0017690:+150078 | None:intergenic |
| GTGATTAAAGGAACGATACC+AGG | 0.560094 | tig0017690:+152212 | None:intergenic |
| GCCAAATCCGCACGGCAGCA+AGG | 0.565559 | tig0017690:-149529 | Msa1362010:CDS |
| TCTTATGCTGTTGATAAGGA+AGG | 0.566630 | tig0017690:-150267 | Msa1362010:CDS |
| ATTAAGAAAGAAGAAACCAA+TGG | 0.569071 | tig0017690:-151151 | Msa1362010:CDS |
| GATCGTCTGCTCGAAAAGCT+AGG | 0.570026 | tig0017690:-150179 | Msa1362010:CDS |
| TCTCTGTGTATGGCTCCTCC+AGG | 0.571504 | tig0017690:+149608 | None:intergenic |
| TATGCACACATGTCTCACTT+GGG | 0.573102 | tig0017690:-151777 | Msa1362010:CDS |
| CATGATGGACGGGGAGCCAA+AGG | 0.574571 | tig0017690:+150211 | None:intergenic |
| CATTGTTGGTGGGAGATCCA+TGG | 0.578805 | tig0017690:-149447 | Msa1362010:CDS |
| TTCACTGGCCATTCTCTTGG+GGG | 0.579207 | tig0017690:-150311 | Msa1362010:CDS |
| ATCGGTCACTTAATATCTCG+AGG | 0.582626 | tig0017690:+149642 | None:intergenic |
| GGCCAGGCAATTGTTTCTGG+CGG | 0.586577 | tig0017690:+152070 | None:intergenic |
| ACTTTGTGTTTATTACAAAG+TGG | 0.587222 | tig0017690:-152239 | Msa1362010:CDS |
| CATGCTCACCTAAAATCTCA+AGG | 0.588915 | tig0017690:-150353 | Msa1362010:CDS |
| GAGGCTGGTCTTGAATAATA+CGG | 0.591656 | tig0017690:+149417 | None:intergenic |
| AGTTATATGTTTCCGAGAGT+AGG | 0.593280 | tig0017690:+149296 | None:intergenic |
| CATTTGATTCTGAAAGAAGA+GGG | 0.594352 | tig0017690:+149720 | None:intergenic |
| TCACCTCCACACATGATGGA+CGG | 0.595113 | tig0017690:+150200 | None:intergenic |
| AGAGTTGTGGAAGAAGGAGA+TGG | 0.596023 | tig0017690:-152017 | Msa1362010:CDS |
| TGTTTGTAGAGTTGATGAAG+AGG | 0.596553 | tig0017690:-151901 | Msa1362010:CDS |
| TCATTTGATTCTGAAAGAAG+AGG | 0.596751 | tig0017690:+149719 | None:intergenic |
| GGCTCCCCGTCCATCATGTG+TGG | 0.599550 | tig0017690:-150206 | Msa1362010:CDS |
| GCACAGAGACATAGTACCAC+GGG | 0.600168 | tig0017690:-150123 | Msa1362010:CDS |
| CTCCGCCGTAACCTCGTCGA+CGG | 0.603252 | tig0017690:+152049 | None:intergenic |
| AGATGCCGGAGAAAGAAAAG+AGG | 0.605156 | tig0017690:-151125 | Msa1362010:CDS |
| TACCCGGTGGAAGAAGATGA+TGG | 0.607656 | tig0017690:+149765 | None:intergenic |
| AAGCTGCTATATGCACCGAT+GGG | 0.608378 | tig0017690:-149830 | Msa1362010:CDS |
| AGAATCAGTAATTCGCCCAT+CGG | 0.612468 | tig0017690:+149815 | None:intergenic |
| CAATTGCCTGGCCGTCGACG+AGG | 0.614272 | tig0017690:-152060 | Msa1362010:CDS |
| GGGAACCTCTTGAAAAGGTG+TGG | 0.615583 | tig0017690:-151223 | Msa1362010:CDS |
| AAGGAGAGAACTAAGACGAA+AGG | 0.616416 | tig0017690:-149510 | Msa1362010:CDS |
| CATAGATACCTCTATGGACA+AGG | 0.616860 | tig0017690:+150417 | None:intergenic |
| AGTGATGCGGACATTGTTGG+TGG | 0.617441 | tig0017690:-149458 | Msa1362010:CDS |
| GGCTCCTCCAGGTCCATAGG+CGG | 0.617601 | tig0017690:+149619 | None:intergenic |
| CTTACACTTCGTGCCACAAG+AGG | 0.618198 | tig0017690:+149479 | None:intergenic |
| GGTGGAAGAAGATGATGGCT+AGG | 0.619407 | tig0017690:+149770 | None:intergenic |
| AACTAAGACGAAAGGTGCGG+TGG | 0.620457 | tig0017690:-149502 | Msa1362010:CDS |
| AGCCATCATCTTCTTCCACC+GGG | 0.620848 | tig0017690:-149767 | Msa1362010:CDS |
| TGTCCATAGAGGTATCTATG+AGG | 0.623935 | tig0017690:-150414 | Msa1362010:CDS |
| GCATCAATCTCACGTGAGCA+CGG | 0.629640 | tig0017690:-152141 | Msa1362010:CDS |
| TCGGTCACTTAATATCTCGA+GGG | 0.631519 | tig0017690:+149643 | None:intergenic |
| AGATGGACAAAATGGGAACT+GGG | 0.633266 | tig0017690:-152000 | Msa1362010:CDS |
| TTAGATGTCCTTGTCCATAG+AGG | 0.637092 | tig0017690:-150425 | Msa1362010:CDS |
| AATAATACGGACAGATACCA+TGG | 0.637561 | tig0017690:+149430 | None:intergenic |
| GGGGAGCCAAAGGTTACCAC+AGG | 0.637612 | tig0017690:+150221 | None:intergenic |
| TCCCCGTCCATCATGTGTGG+AGG | 0.638035 | tig0017690:-150203 | Msa1362010:CDS |
| TTTACTTGGTTATTAAGACA+AGG | 0.638155 | tig0017690:+150029 | None:intergenic |
| CGATCCGCCTATGGACCTGG+AGG | 0.638363 | tig0017690:-149623 | Msa1362010:CDS |
| CGGTCACTTAATATCTCGAG+GGG | 0.642028 | tig0017690:+149644 | None:intergenic |
| TGATGCTTGTGAGATTGCAG+TGG | 0.646322 | tig0017690:-151071 | Msa1362010:CDS |
| AGAACTCAGCCAAATCCGCA+CGG | 0.648030 | tig0017690:-149537 | Msa1362010:CDS |
| GGAGAATGTAAACAGAGTTG+TGG | 0.651308 | tig0017690:-152030 | Msa1362010:CDS |
| GTTCTCTCCTTGCTGCCGTG+CGG | 0.651475 | tig0017690:+149522 | None:intergenic |
| GGCCGTCGACGAGGTTACGG+CGG | 0.651522 | tig0017690:-152051 | Msa1362010:CDS |
| ACCTCCACACATGATGGACG+GGG | 0.657981 | tig0017690:+150202 | None:intergenic |
| ATGCACACATGTCTCACTTG+GGG | 0.665122 | tig0017690:-151776 | Msa1362010:CDS |
| TACTTGCATGAAAATGCCCG+TGG | 0.685103 | tig0017690:+150107 | None:intergenic |
| TGCACAGAGACATAGTACCA+CGG | 0.687263 | tig0017690:-150124 | Msa1362010:CDS |
| AACTACCAATTCAATGACAG+CGG | 0.687266 | tig0017690:-150969 | Msa1362010:CDS |
| TGTTTAATCCCTGAAAAGGG+AGG | 0.687911 | tig0017690:+149398 | None:intergenic |
| GTGATGCGGACATTGTTGGT+GGG | 0.700714 | tig0017690:-149457 | Msa1362010:CDS |
| AATCTCACGTGAGCACGGTG+AGG | 0.702468 | tig0017690:-152136 | Msa1362010:CDS |
| ATTCCTTGAACGTGACTCCG+CGG | 0.708794 | tig0017690:+150152 | None:intergenic |
| GAGAACTAAGACGAAAGGTG+CGG | 0.711212 | tig0017690:-149505 | Msa1362010:CDS |
| TATTAAGACAAGGATGACTG+CGG | 0.711381 | tig0017690:+150039 | None:intergenic |
| TCACATATGAACCATTCACA+GGG | 0.713581 | tig0017690:+150881 | None:intergenic |
| GGCACGAAGTGTAAGTGATG+CGG | 0.720051 | tig0017690:-149471 | Msa1362010:CDS |
| AAAAGATATAGACCACTACC+CGG | 0.728169 | tig0017690:+149749 | None:intergenic |
| AGATATAGACCACTACCCGG+TGG | 0.732749 | tig0017690:+149752 | None:intergenic |
| TCGAAAAGCTAGGTTTACCG+CGG | 0.741792 | tig0017690:-150169 | Msa1362010:CDS |
| ATATCAACAGATGTTACCCG+AGG | 0.747249 | tig0017690:-150378 | Msa1362010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTACTTATATTTAACAC+CGG | + | tig0017690:151566-151585 | None:intergenic | 15.0% |
| !!! | TCATTAAGATTTAAAATCAA+AGG | + | tig0017690:151679-151698 | None:intergenic | 15.0% |
| !!! | TTTTTGATCTTAATTCTGTA+TGG | - | tig0017690:149575-149594 | Msa1362010:CDS | 20.0% |
| !! | ATGAAATAAACCTTGATATT+GGG | + | tig0017690:149811-149830 | None:intergenic | 20.0% |
| !! | TTTATACATTAGGAATGTTT+AGG | - | tig0017690:149872-149891 | Msa1362010:intron | 20.0% |
| !! | ATTAAAAATGATAGCAAGTT+TGG | - | tig0017690:150823-150842 | Msa1362010:intron | 20.0% |
| !!! | AGATACATTTTTTTTTCCTT+AGG | - | tig0017690:151093-151112 | Msa1362010:CDS | 20.0% |
| !!! | GATACATTTTTTTTTCCTTA+GGG | - | tig0017690:151094-151113 | Msa1362010:CDS | 20.0% |
| !!! | ATACATTTTTTTTTCCTTAG+GGG | - | tig0017690:151095-151114 | Msa1362010:CDS | 20.0% |
| ! | ACTTTGTGTTTATTACAAAG+TGG | - | tig0017690:149304-149323 | Msa1362010:CDS | 25.0% |
| ! | CTTTGTGTTTATTACAAAGT+GGG | - | tig0017690:149305-149324 | Msa1362010:CDS | 25.0% |
| ! | GATGAAATAAACCTTGATAT+TGG | + | tig0017690:149812-149831 | None:intergenic | 25.0% |
| !! | TACAAAAACCTTCATAGTTT+TGG | - | tig0017690:149910-149929 | Msa1362010:intron | 25.0% |
| !!! | CATTATTTTTGTACTTTGAG+TGG | - | tig0017690:150202-150221 | Msa1362010:CDS | 25.0% |
| !!! | TGCTATGCTAATTTGTATTT+TGG | - | tig0017690:150280-150299 | Msa1362010:CDS | 25.0% |
| ! | ATTAAGAAAGAAGAAACCAA+TGG | - | tig0017690:150392-150411 | Msa1362010:CDS | 25.0% |
| ! | TTAAGAAAGAAGAAACCAAT+GGG | - | tig0017690:150393-150412 | Msa1362010:CDS | 25.0% |
| !!! | TACGAGATATTTTGTTATTC+AGG | - | tig0017690:150700-150719 | Msa1362010:intron | 25.0% |
| ! | ATGTTATGTGAATAATCACA+AGG | + | tig0017690:150789-150808 | None:intergenic | 25.0% |
| !!! | AGCAAGTTTGGATTTATTTT+TGG | - | tig0017690:150835-150854 | Msa1362010:intron | 25.0% |
| ! | GTATCAAAACAATAATTGGT+TGG | + | tig0017690:150869-150888 | None:intergenic | 25.0% |
| !!! | AATTATTGTTTTGATACGCA+GGG | - | tig0017690:150872-150891 | Msa1362010:CDS | 25.0% |
| ! | TGTTTACACTTTGTGAAATT+GGG | - | tig0017690:151064-151083 | Msa1362010:CDS | 25.0% |
| ! | TAAATCTTATGCTGTTGATA+AGG | - | tig0017690:151272-151291 | Msa1362010:intron | 25.0% |
| ! | TTTACTTGGTTATTAAGACA+AGG | + | tig0017690:151517-151536 | None:intergenic | 25.0% |
| !! | ATTATCTGAAATACTTCATC+CGG | - | tig0017690:151544-151563 | Msa1362010:intron | 25.0% |
| ! | AACTACAAAAAGAATATCTC+TGG | + | tig0017690:151650-151669 | None:intergenic | 25.0% |
| GCAGTAATAGAAGTGATTAA+AGG | + | tig0017690:149346-149365 | None:intergenic | 30.0% | |
| TATGAATCTGTAAAACTTGG+AGG | + | tig0017690:149446-149465 | None:intergenic | 30.0% | |
| ! | TCCAAGTTTTACAGATTCAT+AGG | - | tig0017690:149445-149464 | Msa1362010:CDS | 30.0% |
| ACCTATGAATCTGTAAAACT+TGG | + | tig0017690:149449-149468 | None:intergenic | 30.0% | |
| TCTTAATTCTGTATGGAAAG+AGG | - | tig0017690:149582-149601 | Msa1362010:CDS | 30.0% | |
| ATACTCTATTCCCAATATCA+AGG | - | tig0017690:149798-149817 | Msa1362010:CDS | 30.0% | |
| ! | GAAAGCATAAAAGGAAATGA+AGG | + | tig0017690:149834-149853 | None:intergenic | 30.0% |
| ! | CAAAGACATGAAAGCATAAA+AGG | + | tig0017690:149843-149862 | None:intergenic | 30.0% |
| GTGCACTTTCTTTATACATT+AGG | - | tig0017690:149862-149881 | Msa1362010:intron | 30.0% | |
| TATCAATGCCAAAACTATGA+AGG | + | tig0017690:149921-149940 | None:intergenic | 30.0% | |
| !!! | TCATAGTTTTGGCATTGATA+AGG | - | tig0017690:149921-149940 | Msa1362010:intron | 30.0% |
| ! | AGCATAGCAATCCTAATTTT+GGG | + | tig0017690:150269-150288 | None:intergenic | 30.0% |
| ! | TAGCATAGCAATCCTAATTT+TGG | + | tig0017690:150270-150289 | None:intergenic | 30.0% |
| AACTTCATCAATAGAGAAGA+AGG | - | tig0017690:150355-150374 | Msa1362010:CDS | 30.0% | |
| GAAAGAAAAGAGGAAAAGAA+TGG | - | tig0017690:150428-150447 | Msa1362010:CDS | 30.0% | |
| AACATGATAAAAACTGACGT+TGG | - | tig0017690:150539-150558 | Msa1362010:intron | 30.0% | |
| ACATGATAAAAACTGACGTT+GGG | - | tig0017690:150540-150559 | Msa1362010:intron | 30.0% | |
| TTCAGGTATGAAAAATTAGC+AGG | - | tig0017690:150717-150736 | Msa1362010:intron | 30.0% | |
| TCAGGTATGAAAAATTAGCA+GGG | - | tig0017690:150718-150737 | Msa1362010:intron | 30.0% | |
| CTGCGTATCAAAACAATAAT+TGG | + | tig0017690:150873-150892 | None:intergenic | 30.0% | |
| !!! | CAATTATTGTTTTGATACGC+AGG | - | tig0017690:150871-150890 | Msa1362010:CDS | 30.0% |
| ACAATTACCTCAAATTGAAC+TGG | + | tig0017690:150941-150960 | None:intergenic | 30.0% | |
| AAATTCATCCCTTTAACAAG+AGG | + | tig0017690:151001-151020 | None:intergenic | 30.0% | |
| GTGTTTACACTTTGTGAAAT+TGG | - | tig0017690:151063-151082 | Msa1362010:CDS | 30.0% | |
| GGTCGTATGTATAAGTAAAA+AGG | + | tig0017690:151629-151648 | None:intergenic | 30.0% | |
| ! | CTAGGTGAAAAATTTTCATC+TGG | + | tig0017690:151758-151777 | None:intergenic | 30.0% |
| ! | CATTTGATTCTGAAAGAAGA+GGG | + | tig0017690:151826-151845 | None:intergenic | 30.0% |
| ! | TCATTTGATTCTGAAAGAAG+AGG | + | tig0017690:151827-151846 | None:intergenic | 30.0% |
| TACAAACAGTTGCATATGTT+GGG | + | tig0017690:152215-152234 | None:intergenic | 30.0% | |
| TTATTACAAAGTGGGATTCC+TGG | - | tig0017690:149313-149332 | Msa1362010:CDS | 35.0% | |
| AAGAAGGAGATGGACAAAAT+GGG | - | tig0017690:149536-149555 | Msa1362010:CDS | 35.0% | |
| TGGAAAGAGGAAAAAAAGAG+TGG | - | tig0017690:149595-149614 | Msa1362010:CDS | 35.0% | |
| !! | TGTTTGTAGAGTTGATGAAG+AGG | - | tig0017690:149642-149661 | Msa1362010:CDS | 35.0% |
| !!! | GTTTTCTAGAATGCTTCGTA+GGG | - | tig0017690:149720-149739 | Msa1362010:CDS | 35.0% |
| GCATTTATATGCCACACTAA+AGG | - | tig0017690:149943-149962 | Msa1362010:intron | 35.0% | |
| ! | GTGTTTGATACCTGATTTGT+AGG | - | tig0017690:150063-150082 | Msa1362010:CDS | 35.0% |
| AAACATGCAATCTTAGAGCA+AGG | + | tig0017690:150103-150122 | None:intergenic | 35.0% | |
| ! | TTTGTGACCTGATTGATGAT+CGG | - | tig0017690:150137-150156 | Msa1362010:CDS | 35.0% |
| CTATATTCCGATCATCAATC+AGG | + | tig0017690:150147-150166 | None:intergenic | 35.0% | |
| TTGAGTGGAATTCAATTGTG+TGG | - | tig0017690:150217-150236 | Msa1362010:CDS | 35.0% | |
| GAATGTGTTCACCCAAAATT+AGG | - | tig0017690:150255-150274 | Msa1362010:CDS | 35.0% | |
| ATCAATAGAGAAGAAGGAAC+TGG | - | tig0017690:150361-150380 | Msa1362010:CDS | 35.0% | |
| ! | CTTTTCCTCTTTTCTTTCTC+CGG | + | tig0017690:150426-150445 | None:intergenic | 35.0% |
| AACTACCAATTCAATGACAG+CGG | - | tig0017690:150574-150593 | Msa1362010:intron | 35.0% | |
| TCACATATGAACCATTCACA+GGG | + | tig0017690:150665-150684 | None:intergenic | 35.0% | |
| CAGGTATGAAAAATTAGCAG+GGG | - | tig0017690:150719-150738 | Msa1362010:intron | 35.0% | |
| ! | ATTGAACTGGCTCAAAAAGT+AGG | + | tig0017690:150928-150947 | None:intergenic | 35.0% |
| ! | TTTTGAGCCAGTTCAATTTG+AGG | - | tig0017690:150931-150950 | Msa1362010:CDS | 35.0% |
| GAGGTAATTGTTACTATTGC+AGG | - | tig0017690:150950-150969 | Msa1362010:CDS | 35.0% | |
| ATGCGATTCCTCTTGTTAAA+GGG | - | tig0017690:150990-151009 | Msa1362010:CDS | 35.0% | |
| ACCTAAAATCTCAAGGTTCT+CGG | - | tig0017690:151197-151216 | Msa1362010:CDS | 35.0% | |
| ! | TCTTATGCTGTTGATAAGGA+AGG | - | tig0017690:151276-151295 | Msa1362010:intron | 35.0% |
| ACAGGAAGCAAAGAAGAAAT+AGG | + | tig0017690:151307-151326 | None:intergenic | 35.0% | |
| TATTTCTTCTTTGCTTCCTG+TGG | - | tig0017690:151306-151325 | Msa1362010:intron | 35.0% | |
| TATTAAGACAAGGATGACTG+CGG | + | tig0017690:151507-151526 | None:intergenic | 35.0% | |
| AGATAATGTCGCACTTTACT+TGG | + | tig0017690:151531-151550 | None:intergenic | 35.0% | |
| AAAAGATATAGACCACTACC+CGG | + | tig0017690:151797-151816 | None:intergenic | 35.0% | |
| ! | AGTGGTCTATATCTTTTGAG+TGG | - | tig0017690:151800-151819 | Msa1362010:CDS | 35.0% |
| AATAATACGGACAGATACCA+TGG | + | tig0017690:152116-152135 | None:intergenic | 35.0% | |
| GTCTGTTTAATCCCTGAAAA+GGG | + | tig0017690:152151-152170 | None:intergenic | 35.0% | |
| TGTCTGTTTAATCCCTGAAA+AGG | + | tig0017690:152152-152171 | None:intergenic | 35.0% | |
| !! | TTTTCAGGGATTAAACAGAC+AGG | - | tig0017690:152151-152170 | Msa1362010:CDS | 35.0% |
| AGTCCTTGAAAAGGTTTAGT+AGG | - | tig0017690:152179-152198 | Msa1362010:CDS | 35.0% | |
| ! | AAGCCTACTAAACCTTTTCA+AGG | + | tig0017690:152185-152204 | None:intergenic | 35.0% |
| CTACAAACAGTTGCATATGT+TGG | + | tig0017690:152216-152235 | None:intergenic | 35.0% | |
| GTGATTAAAGGAACGATACC+AGG | + | tig0017690:149334-149353 | None:intergenic | 40.0% | |
| GGAGAATGTAAACAGAGTTG+TGG | - | tig0017690:149513-149532 | Msa1362010:CDS | 40.0% | |
| GTAAACAGAGTTGTGGAAGA+AGG | - | tig0017690:149520-149539 | Msa1362010:CDS | 40.0% | |
| GAAGAAGGAGATGGACAAAA+TGG | - | tig0017690:149535-149554 | Msa1362010:CDS | 40.0% | |
| AGATGGACAAAATGGGAACT+GGG | - | tig0017690:149543-149562 | Msa1362010:CDS | 40.0% | |
| ! | AAATGGGAACTGGGTTTTCA+AGG | - | tig0017690:149552-149571 | Msa1362010:CDS | 40.0% |
| !!! | CGTTTTCTAGAATGCTTCGT+AGG | - | tig0017690:149719-149738 | Msa1362010:CDS | 40.0% |
| TATGCACACATGTCTCACTT+GGG | - | tig0017690:149766-149785 | Msa1362010:CDS | 40.0% | |
| ! | ACCTGATTTGTAGGCTTTGT+TGG | - | tig0017690:150072-150091 | Msa1362010:CDS | 40.0% |
| TCCAACAAAGCCTACAAATC+AGG | + | tig0017690:150076-150095 | None:intergenic | 40.0% | |
| ! | GATCGGAATATAGTTCTGCT+AGG | - | tig0017690:150154-150173 | Msa1362010:CDS | 40.0% |
| GTTCTGCTAGGAAGATATGT+AGG | - | tig0017690:150166-150185 | Msa1362010:CDS | 40.0% | |
| AGGAAGATATGTAGGTCAGT+AGG | - | tig0017690:150174-150193 | Msa1362010:CDS | 40.0% | |
| AAGATATGTAGGTCAGTAGG+TGG | - | tig0017690:150177-150196 | Msa1362010:CDS | 40.0% | |
| AGATATGTAGGTCAGTAGGT+GGG | - | tig0017690:150178-150197 | Msa1362010:CDS | 40.0% | |
| TTGGAACTGTGAATTTAGCC+AGG | - | tig0017690:150299-150318 | Msa1362010:CDS | 40.0% | |
| TGGAACTGTGAATTTAGCCA+GGG | - | tig0017690:150300-150319 | Msa1362010:CDS | 40.0% | |
| AACAACCGCTGTCATTGAAT+TGG | + | tig0017690:150582-150601 | None:intergenic | 40.0% | |
| GTCACATATGAACCATTCAC+AGG | + | tig0017690:150666-150685 | None:intergenic | 40.0% | |
| GTTCAGAGTCATTTGAATCC+TGG | - | tig0017690:150894-150913 | Msa1362010:CDS | 40.0% | |
| GATGCGATTCCTCTTGTTAA+AGG | - | tig0017690:150989-151008 | Msa1362010:CDS | 40.0% | |
| TTAGATGTCCTTGTCCATAG+AGG | - | tig0017690:151118-151137 | Msa1362010:CDS | 40.0% | |
| CATAGATACCTCTATGGACA+AGG | + | tig0017690:151129-151148 | None:intergenic | 40.0% | |
| !! | TGTCCATAGAGGTATCTATG+AGG | - | tig0017690:151129-151148 | Msa1362010:CDS | 40.0% |
| GTATCTATGAGGCTGCTAAA+GGG | - | tig0017690:151140-151159 | Msa1362010:CDS | 40.0% | |
| ATATCAACAGATGTTACCCG+AGG | - | tig0017690:151165-151184 | Msa1362010:CDS | 40.0% | |
| !! | TTTTAGGTGAGCATGAACCT+CGG | + | tig0017690:151185-151204 | None:intergenic | 40.0% |
| CATGCTCACCTAAAATCTCA+AGG | - | tig0017690:151190-151209 | Msa1362010:CDS | 40.0% | |
| CCTAAAATCTCAAGGTTCTC+GGG | - | tig0017690:151198-151217 | Msa1362010:CDS | 40.0% | |
| GTAATTCTGCGACATGGTTA+GGG | + | tig0017690:151462-151481 | None:intergenic | 40.0% | |
| AGTAATTCTGCGACATGGTT+AGG | + | tig0017690:151463-151482 | None:intergenic | 40.0% | |
| CCTTTAGTAATTCTGCGACA+TGG | + | tig0017690:151468-151487 | None:intergenic | 40.0% | |
| CCATGTCGCAGAATTACTAA+AGG | - | tig0017690:151465-151484 | Msa1362010:intron | 40.0% | |
| AGAATCAGTAATTCGCCCAT+CGG | + | tig0017690:151731-151750 | None:intergenic | 40.0% | |
| TCGGTCACTTAATATCTCGA+GGG | + | tig0017690:151903-151922 | None:intergenic | 40.0% | |
| ATCGGTCACTTAATATCTCG+AGG | + | tig0017690:151904-151923 | None:intergenic | 40.0% | |
| CATGTCATGATCTCTGTGTA+TGG | + | tig0017690:151948-151967 | None:intergenic | 40.0% | |
| AAGGAGAGAACTAAGACGAA+AGG | - | tig0017690:152033-152052 | Msa1362010:CDS | 40.0% | |
| !! | GAGGCTGGTCTTGAATAATA+CGG | + | tig0017690:152129-152148 | None:intergenic | 40.0% |
| TGTTTAATCCCTGAAAAGGG+AGG | + | tig0017690:152148-152167 | None:intergenic | 40.0% | |
| CAGGTAGAAAGTCCTTGAAA+AGG | - | tig0017690:152170-152189 | Msa1362010:CDS | 40.0% | |
| ATGCACGTGAACGTGATCAT+TGG | + | tig0017690:149386-149405 | None:intergenic | 45.0% | |
| AGAGTTGTGGAAGAAGGAGA+TGG | - | tig0017690:149526-149545 | Msa1362010:CDS | 45.0% | |
| GAGATGGACAAAATGGGAAC+TGG | - | tig0017690:149542-149561 | Msa1362010:CDS | 45.0% | |
| GTATGCACACATGTCTCACT+TGG | - | tig0017690:149765-149784 | Msa1362010:CDS | 45.0% | |
| ATGCACACATGTCTCACTTG+GGG | - | tig0017690:149767-149786 | Msa1362010:CDS | 45.0% | |
| CATGTCTCACTTGGGGAATT+TGG | - | tig0017690:149774-149793 | Msa1362010:CDS | 45.0% | |
| GATATGTAGGTCAGTAGGTG+GGG | - | tig0017690:150179-150198 | Msa1362010:CDS | 45.0% | |
| GAAACCAATGGGAAAGATGC+CGG | - | tig0017690:150404-150423 | Msa1362010:CDS | 45.0% | |
| AGATGCCGGAGAAAGAAAAG+AGG | - | tig0017690:150418-150437 | Msa1362010:CDS | 45.0% | |
| TGATGCTTGTGAGATTGCAG+TGG | - | tig0017690:150472-150491 | Msa1362010:intron | 45.0% | |
| TGTGAGATTGCAGTGGTTGA+AGG | - | tig0017690:150479-150498 | Msa1362010:intron | 45.0% | |
| AACTGACGTTGGGTCTTTGA+TGG | - | tig0017690:150550-150569 | Msa1362010:intron | 45.0% | |
| CAAGTTCTTCACCCTGTGAA+TGG | - | tig0017690:150651-150670 | Msa1362010:CDS | 45.0% | |
| AGAGTCATTTGAATCCTGGC+AGG | - | tig0017690:150898-150917 | Msa1362010:CDS | 45.0% | |
| AAAAAGTAGGTTTGCCTGCC+AGG | + | tig0017690:150915-150934 | None:intergenic | 45.0% | |
| ACAAGGACATCTAACCCCTA+AGG | + | tig0017690:151112-151131 | None:intergenic | 45.0% | |
| CAGCCTCATAGATACCTCTA+TGG | + | tig0017690:151135-151154 | None:intergenic | 45.0% | |
| GGTATCTATGAGGCTGCTAA+AGG | - | tig0017690:151139-151158 | Msa1362010:CDS | 45.0% | |
| TTTAGGTGAGCATGAACCTC+GGG | + | tig0017690:151184-151203 | None:intergenic | 45.0% | |
| ! | CCCGAGAACCTTGAGATTTT+AGG | + | tig0017690:151201-151220 | None:intergenic | 45.0% |
| CAAGAGAATGGCCAGTGAAA+CGG | + | tig0017690:151231-151250 | None:intergenic | 45.0% | |
| GTTTCACTGGCCATTCTCTT+GGG | - | tig0017690:151230-151249 | Msa1362010:intron | 45.0% | |
| TTTCACTGGCCATTCTCTTG+GGG | - | tig0017690:151231-151250 | Msa1362010:intron | 45.0% | |
| TTGCTTCCTGTGGTAACCTT+TGG | - | tig0017690:151316-151335 | Msa1362010:intron | 45.0% | |
| TCGAAAAGCTAGGTTTACCG+CGG | - | tig0017690:151374-151393 | Msa1362010:intron | 45.0% | |
| TGCACAGAGACATAGTACCA+CGG | - | tig0017690:151419-151438 | Msa1362010:intron | 45.0% | |
| TACTTGCATGAAAATGCCCG+TGG | + | tig0017690:151439-151458 | None:intergenic | 45.0% | |
| ! | AAGCTGCTATATGCACCGAT+GGG | - | tig0017690:151713-151732 | Msa1362010:CDS | 45.0% |
| TAGCCATCATCTTCTTCCAC+CGG | - | tig0017690:151775-151794 | Msa1362010:CDS | 45.0% | |
| !! | CCAATTTAGCAGCTTTGAGC+TGG | + | tig0017690:151859-151878 | None:intergenic | 45.0% |
| CCAGCTCAAAGCTGCTAAAT+TGG | - | tig0017690:151856-151875 | Msa1362010:CDS | 45.0% | |
| CTTAATATCTCGAGGGGATG+TGG | + | tig0017690:151896-151915 | None:intergenic | 45.0% | |
| CGGTCACTTAATATCTCGAG+GGG | + | tig0017690:151902-151921 | None:intergenic | 45.0% | |
| GAGAACTAAGACGAAAGGTG+CGG | - | tig0017690:152038-152057 | Msa1362010:CDS | 45.0% | |
| GTAAGTGATGCGGACATTGT+TGG | - | tig0017690:152082-152101 | Msa1362010:CDS | 45.0% | |
| GTGTTCTTGCTTCCTACTCT+CGG | - | tig0017690:152235-152254 | Msa1362010:CDS | 45.0% | |
| GCATCAATCTCACGTGAGCA+CGG | - | tig0017690:149402-149421 | Msa1362010:CDS | 50.0% | |
| CACTGTACACGCCTTTAGTG+TGG | + | tig0017690:149957-149976 | None:intergenic | 50.0% | |
| AGCCAGGGAACCTCTTGAAA+AGG | - | tig0017690:150315-150334 | Msa1362010:CDS | 50.0% | |
| !! | CACCTTTTCAAGAGGTTCCC+TGG | + | tig0017690:150320-150339 | None:intergenic | 50.0% |
| GGGAACCTCTTGAAAAGGTG+TGG | - | tig0017690:150320-150339 | Msa1362010:CDS | 50.0% | |
| !! | GCAGACCACACCTTTTCAAG+AGG | + | tig0017690:150328-150347 | None:intergenic | 50.0% |
| TTCTCCGGCATCTTTCCCAT+TGG | + | tig0017690:150411-150430 | None:intergenic | 50.0% | |
| CGTTTCACTGGCCATTCTCT+TGG | - | tig0017690:151229-151248 | Msa1362010:CDS | 50.0% | |
| TTCACTGGCCATTCTCTTGG+GGG | - | tig0017690:151232-151251 | Msa1362010:intron | 50.0% | |
| ! | TCACCTCCACACATGATGGA+CGG | + | tig0017690:151346-151365 | None:intergenic | 50.0% |
| ACGATCACCTCCACACATGA+TGG | + | tig0017690:151350-151369 | None:intergenic | 50.0% | |
| GATCGTCTGCTCGAAAAGCT+AGG | - | tig0017690:151364-151383 | Msa1362010:intron | 50.0% | |
| ATTCCTTGAACGTGACTCCG+CGG | + | tig0017690:151394-151413 | None:intergenic | 50.0% | |
| GCACAGAGACATAGTACCAC+GGG | - | tig0017690:151420-151439 | Msa1362010:intron | 50.0% | |
| ACAAGGATGACTGCGGAAAC+TGG | + | tig0017690:151500-151519 | None:intergenic | 50.0% | |
| GAAGCTGCTATATGCACCGA+TGG | - | tig0017690:151712-151731 | Msa1362010:CDS | 50.0% | |
| ! | GGTGGAAGAAGATGATGGCT+AGG | + | tig0017690:151776-151795 | None:intergenic | 50.0% |
| AGCCATCATCTTCTTCCACC+GGG | - | tig0017690:151776-151795 | Msa1362010:CDS | 50.0% | |
| TACCCGGTGGAAGAAGATGA+TGG | + | tig0017690:151781-151800 | None:intergenic | 50.0% | |
| AGATATAGACCACTACCCGG+TGG | + | tig0017690:151794-151813 | None:intergenic | 50.0% | |
| TTAAGTGACCGATCCGCCTA+TGG | - | tig0017690:151911-151930 | Msa1362010:CDS | 50.0% | |
| GCTGAGTTCTTGGCGAATCA+CGG | + | tig0017690:151996-152015 | None:intergenic | 50.0% | |
| TGCGGATTTGGCTGAGTTCT+TGG | + | tig0017690:152006-152025 | None:intergenic | 50.0% | |
| AGAACTCAGCCAAATCCGCA+CGG | - | tig0017690:152006-152025 | Msa1362010:CDS | 50.0% | |
| ! | AACTAAGACGAAAGGTGCGG+TGG | - | tig0017690:152041-152060 | Msa1362010:CDS | 50.0% |
| CTTACACTTCGTGCCACAAG+AGG | + | tig0017690:152067-152086 | None:intergenic | 50.0% | |
| GGCACGAAGTGTAAGTGATG+CGG | - | tig0017690:152072-152091 | Msa1362010:CDS | 50.0% | |
| AGTGATGCGGACATTGTTGG+TGG | - | tig0017690:152085-152104 | Msa1362010:CDS | 50.0% | |
| GTGATGCGGACATTGTTGGT+GGG | - | tig0017690:152086-152105 | Msa1362010:CDS | 50.0% | |
| ! | CATTGTTGGTGGGAGATCCA+TGG | - | tig0017690:152096-152115 | Msa1362010:CDS | 50.0% |
| ! | AAGACCAGCCTCCCTTTTCA+GGG | - | tig0017690:152137-152156 | Msa1362010:CDS | 50.0% |
| TAATCCCTGAAAAGGGAGGC+TGG | + | tig0017690:152144-152163 | None:intergenic | 50.0% | |
| AATCTCACGTGAGCACGGTG+AGG | - | tig0017690:149407-149426 | Msa1362010:CDS | 55.0% | |
| CTCCGCCAGAAACAATTGCC+TGG | - | tig0017690:149471-149490 | Msa1362010:CDS | 55.0% | |
| !! | GGCCAGGCAATTGTTTCTGG+CGG | + | tig0017690:149476-149495 | None:intergenic | 55.0% |
| GACGGCCAGGCAATTGTTTC+TGG | + | tig0017690:149479-149498 | None:intergenic | 55.0% | |
| CGGGCAACTTTCCGTTTCAC+TGG | - | tig0017690:151217-151236 | Msa1362010:CDS | 55.0% | |
| CCAAGCTTCCCCCAAGAGAA+TGG | + | tig0017690:151243-151262 | None:intergenic | 55.0% | |
| CCATTCTCTTGGGGGAAGCT+TGG | - | tig0017690:151240-151259 | Msa1362010:intron | 55.0% | |
| !! | ACCTCCACACATGATGGACG+GGG | + | tig0017690:151344-151363 | None:intergenic | 55.0% |
| !! | CACCTCCACACATGATGGAC+GGG | + | tig0017690:151345-151364 | None:intergenic | 55.0% |
| TTACCGCGGAGTCACGTTCA+AGG | - | tig0017690:151388-151407 | Msa1362010:intron | 55.0% | |
| CATCTTCTTCCACCGGGTAG+TGG | - | tig0017690:151782-151801 | Msa1362010:CDS | 55.0% | |
| TATGGCTCCTCCAGGTCCAT+AGG | + | tig0017690:151930-151949 | None:intergenic | 55.0% | |
| TCTCTGTGTATGGCTCCTCC+AGG | + | tig0017690:151938-151957 | None:intergenic | 55.0% | |
| ! | CAAGACCAGCCTCCCTTTTC+AGG | - | tig0017690:152136-152155 | Msa1362010:CDS | 55.0% |
| GGGGAGCCAAAGGTTACCAC+AGG | + | tig0017690:151325-151344 | None:intergenic | 60.0% | |
| !! | CATGATGGACGGGGAGCCAA+AGG | + | tig0017690:151335-151354 | None:intergenic | 60.0% |
| TCCCCGTCCATCATGTGTGG+AGG | - | tig0017690:151340-151359 | Msa1362010:intron | 60.0% | |
| CTCCAGGTCCATAGGCGGAT+CGG | + | tig0017690:151922-151941 | None:intergenic | 60.0% | |
| TCCTTGCTGCCGTGCGGATT+TGG | + | tig0017690:152018-152037 | None:intergenic | 60.0% | |
| GTTCTCTCCTTGCTGCCGTG+CGG | + | tig0017690:152024-152043 | None:intergenic | 60.0% | |
| ! | AAAGGTGCGGTGGCCTCTTG+TGG | - | tig0017690:152051-152070 | Msa1362010:CDS | 60.0% |
| CAATTGCCTGGCCGTCGACG+AGG | - | tig0017690:149483-149502 | Msa1362010:CDS | 65.0% | |
| CCTGGCCGTCGACGAGGTTA+CGG | - | tig0017690:149489-149508 | Msa1362010:CDS | 65.0% | |
| CTCCGCCGTAACCTCGTCGA+CGG | + | tig0017690:149497-149516 | None:intergenic | 65.0% | |
| GGCTCCCCGTCCATCATGTG+TGG | - | tig0017690:151337-151356 | Msa1362010:intron | 65.0% | |
| GACCGATCCGCCTATGGACC+TGG | - | tig0017690:151917-151936 | Msa1362010:CDS | 65.0% | |
| CGATCCGCCTATGGACCTGG+AGG | - | tig0017690:151920-151939 | Msa1362010:CDS | 65.0% | |
| GGCTCCTCCAGGTCCATAGG+CGG | + | tig0017690:151927-151946 | None:intergenic | 65.0% | |
| GCCAAATCCGCACGGCAGCA+AGG | - | tig0017690:152014-152033 | Msa1362010:CDS | 65.0% | |
| CCGTAACCTCGTCGACGGCC+AGG | + | tig0017690:149492-149511 | None:intergenic | 70.0% | |
| GGCCGTCGACGAGGTTACGG+CGG | - | tig0017690:149492-149511 | Msa1362010:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017690 | gene | 149298 | 152267 | 149298 | ID=Msa1362010;Name=Msa1362010 |
| tig0017690 | mRNA | 149298 | 152267 | 149298 | ID=Msa1362010-mRNA-1;Parent=Msa1362010;Name=Msa1362010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.75|0.8|5|0|664 |
| tig0017690 | exon | 151710 | 152267 | 151710 | ID=Msa1362010-mRNA-1:exon:12782;Parent=Msa1362010-mRNA-1 |
| tig0017690 | exon | 150844 | 151248 | 150844 | ID=Msa1362010-mRNA-1:exon:12781;Parent=Msa1362010-mRNA-1 |
| tig0017690 | exon | 150613 | 150672 | 150613 | ID=Msa1362010-mRNA-1:exon:12780;Parent=Msa1362010-mRNA-1 |
| tig0017690 | exon | 150034 | 150450 | 150034 | ID=Msa1362010-mRNA-1:exon:12779;Parent=Msa1362010-mRNA-1 |
| tig0017690 | exon | 149298 | 149852 | 149298 | ID=Msa1362010-mRNA-1:exon:12778;Parent=Msa1362010-mRNA-1 |
| tig0017690 | CDS | 151710 | 152267 | 151710 | ID=Msa1362010-mRNA-1:cds;Parent=Msa1362010-mRNA-1 |
| tig0017690 | CDS | 150844 | 151248 | 150844 | ID=Msa1362010-mRNA-1:cds;Parent=Msa1362010-mRNA-1 |
| tig0017690 | CDS | 150613 | 150672 | 150613 | ID=Msa1362010-mRNA-1:cds;Parent=Msa1362010-mRNA-1 |
| tig0017690 | CDS | 150034 | 150450 | 150034 | ID=Msa1362010-mRNA-1:cds;Parent=Msa1362010-mRNA-1 |
| tig0017690 | CDS | 149298 | 149852 | 149298 | ID=Msa1362010-mRNA-1:cds;Parent=Msa1362010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
