AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1128860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1128860 MtrunA17_Chr7g0273371 97.964 393 8 0 1 393 1 393 0.0 803
Msa1128860 MtrunA17_Chr7g0255151 35.135 148 68 4 160 306 163 283 1.71e-20 92.8
Msa1128860 MtrunA17_Chr1g0211241 39.167 120 66 2 120 236 418 533 1.40e-19 90.9
Msa1128860 MtrunA17_Chr6g0462021 34.014 147 77 2 160 306 150 276 1.82e-19 89.7
Msa1128860 MtrunA17_Chr6g0464751 28.230 209 103 4 124 306 78 265 4.36e-19 88.6
Msa1128860 MtrunA17_Chr3g0131931 32.653 147 79 2 160 306 151 277 8.95e-19 87.4
Msa1128860 MtrunA17_Chr4g0064931 41.748 103 47 2 120 210 325 426 6.30e-18 85.9
Msa1128860 MtrunA17_Chr1g0201631 33.333 147 79 2 160 306 136 263 7.90e-18 84.7
Msa1128860 MtrunA17_Chr1g0211231 41.176 102 49 3 120 210 343 444 1.93e-17 84.0
Msa1128860 MtrunA17_Chr4g0049351 35.714 140 77 3 83 209 272 411 3.88e-17 83.2
Msa1128860 MtrunA17_Chr7g0251761 33.103 145 77 2 162 306 152 276 2.08e-16 80.5
Msa1128860 MtrunA17_Chr1g0199411 33.858 127 78 3 120 240 55 181 3.83e-16 78.2
Msa1128860 MtrunA17_Chr4g0009911 30.323 155 83 4 86 223 23 169 2.46e-15 75.9
Msa1128860 MtrunA17_Chr7g0255161 29.936 157 75 3 160 306 90 221 8.97e-14 72.0
Msa1128860 MtrunA17_Chr5g0406311 31.469 143 71 4 162 304 170 285 5.35e-13 69.7
Msa1128860 MtrunA17_Chr5g0418141 59.091 44 18 0 162 205 181 224 2.32e-12 68.6
Msa1128860 MtrunA17_Chr4g0042821 50.000 54 27 0 162 215 181 234 2.37e-12 68.6
Msa1128860 MtrunA17_Chr1g0193941 29.412 204 113 8 127 318 114 298 2.57e-12 68.2
Msa1128860 MtrunA17_Chr7g0276121 34.066 91 44 2 127 201 76 166 8.36e-12 65.5
Msa1128860 MtrunA17_Chr4g0037991 31.008 129 80 3 162 283 171 297 3.89e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1128860 AT3G04970.1 64.675 385 127 3 1 379 1 382 0.0 522
Msa1128860 AT3G04970.2 73.290 307 82 0 1 307 1 307 8.02e-175 490
Msa1128860 AT3G04970.3 63.051 295 100 3 91 379 4 295 1.91e-136 392
Msa1128860 AT5G50020.3 28.464 267 138 6 117 359 71 308 1.04e-20 93.6
Msa1128860 AT5G50020.2 32.243 214 99 5 117 306 101 292 1.32e-20 93.6
Msa1128860 AT2G14255.1 41.121 107 53 2 123 219 316 422 4.97e-20 92.4
Msa1128860 AT5G41060.3 29.703 202 102 4 124 305 24 205 6.59e-20 90.5
Msa1128860 AT5G41060.4 29.703 202 102 4 124 305 24 205 6.59e-20 90.5
Msa1128860 AT5G41060.1 29.703 202 102 4 124 305 91 272 9.49e-20 90.9
Msa1128860 AT5G41060.2 29.557 203 103 4 124 306 76 258 9.84e-20 90.5
Msa1128860 AT3G26935.1 30.732 205 100 5 124 306 91 275 1.40e-19 90.5
Msa1128860 AT4G24630.1 34.694 147 76 2 160 306 136 262 1.02e-18 87.8
Msa1128860 AT3G48760.1 30.180 222 108 5 112 306 83 284 8.55e-18 85.5
Msa1128860 AT3G56930.1 34.014 147 77 2 160 306 146 272 3.21e-17 83.6
Msa1128860 AT5G05070.1 26.818 220 108 4 115 306 99 293 2.66e-16 80.5
Msa1128860 AT5G50020.1 27.341 267 134 7 117 359 71 301 2.80e-16 80.5
Msa1128860 AT3G56920.1 34.694 147 72 3 160 306 142 264 3.45e-16 79.3
Msa1128860 AT5G20350.1 36.800 125 58 3 117 229 317 432 1.26e-15 79.0
Msa1128860 AT2G40990.1 30.612 147 79 2 160 306 160 283 1.44e-15 78.2
Msa1128860 AT3G09320.1 34.507 142 67 4 162 301 99 216 4.77e-14 72.4
Msa1128860 AT1G69420.1 54.386 57 25 1 162 217 165 221 8.69e-14 73.6
Msa1128860 AT1G69420.2 54.386 57 25 1 162 217 165 221 8.69e-14 73.6
Msa1128860 AT5G04270.1 33.333 90 60 0 134 223 66 155 1.58e-13 70.9
Msa1128860 AT4G00840.2 38.824 85 43 3 127 203 71 154 6.90e-13 68.2
Msa1128860 AT4G00840.1 32.143 140 73 6 82 203 19 154 1.69e-12 67.8
Msa1128860 AT3G51390.2 40.984 61 36 0 162 222 159 219 1.32e-11 65.9
Msa1128860 AT3G51390.1 40.984 61 36 0 162 222 164 224 1.38e-11 65.9
Msa1128860 AT4G01730.1 28.977 176 104 7 127 292 116 280 1.60e-11 66.2

Find 101 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAATTAATATCACATTTC+TGG 0.096180 7_3:-80735657 None:intergenic
ATGGAATTGAAAATTCATTT+TGG 0.153553 7_3:+80734482 Msa1128860:CDS
AAGGTTTCTTGCACAATATT+TGG 0.154742 7_3:+80735449 Msa1128860:CDS
CGTAACTTTGCAGTTTATTA+TGG 0.166654 7_3:+80734463 Msa1128860:intron
TGGCTTTCACAATGATTTAT+AGG 0.186947 7_3:-80735637 None:intergenic
AAGAATAATGTTTACAATAA+AGG 0.202965 7_3:+80735430 Msa1128860:CDS
TATTATCATGCAGTGGTTAT+TGG 0.211095 7_3:+80734612 Msa1128860:intron
ATGAAAGTGCCTTCGAAAAT+TGG 0.220315 7_3:-80730509 None:intergenic
TCGTCCCAATCCTCTCTTAC+AGG 0.291503 7_3:+80730747 Msa1128860:CDS
TTGACCAGCTTTACTGATCC+TGG 0.302736 7_3:+80732146 Msa1128860:CDS
TCCTAAGATGCGTTTCCTTT+TGG 0.306530 7_3:+80735541 Msa1128860:three_prime_UTR
ATTATCATGCAGTGGTTATT+GGG 0.310919 7_3:+80734613 Msa1128860:intron
GGCTTTCACAATGATTTATA+GGG 0.318359 7_3:-80735636 None:intergenic
AAAGTTGTCTATATTCTAAC+AGG 0.323299 7_3:+80734363 Msa1128860:CDS
TATACCTGTAACGATTGATT+TGG 0.347671 7_3:+80735810 Msa1128860:three_prime_UTR
TGGAGCCATATCTCTGAATA+AGG 0.353394 7_3:-80736041 None:intergenic
AGGTTTCTTGCACAATATTT+GGG 0.355157 7_3:+80735450 Msa1128860:CDS
AAGAAGAATCTGAGTGTTGT+AGG 0.368816 7_3:-80734638 None:intergenic
CTATTAAAGGTCTTGGTAGC+TGG 0.380467 7_3:+80735564 Msa1128860:three_prime_UTR
GCCAAAAGGAAACGCATCTT+AGG 0.382526 7_3:-80735542 None:intergenic
TAAATAGTATCCAGGGATAT+AGG 0.387946 7_3:-80731974 None:intergenic
ATTCACTGTTTCCTCACTTT+CGG 0.391418 7_3:+80730539 Msa1128860:CDS
CATTTCCTTCTATGTATGTA+TGG 0.394359 7_3:+80734294 Msa1128860:CDS
CCATGGATTGGTGACAGCTT+TGG 0.396604 7_3:+80730457 Msa1128860:CDS
TACTGATCCTGGGACAATAA+AGG 0.405997 7_3:+80732157 Msa1128860:CDS
TAGTTGCACTTAAATTTGAA+TGG 0.407365 7_3:+80735588 Msa1128860:three_prime_UTR
GAGAAACACTCGATATTTCA+TGG 0.410575 7_3:+80732543 Msa1128860:CDS
GTAAACCTTATTCAGAGATA+TGG 0.411254 7_3:+80736036 Msa1128860:three_prime_UTR
GCGATTGTTGGGATGCTGTT+AGG 0.412018 7_3:+80734673 Msa1128860:CDS
AGTCTATTATTGAATTGAAT+TGG 0.412396 7_3:+80730403 None:intergenic
CATGTAGTCTTGCCACTTGA+AGG 0.417053 7_3:-80735257 None:intergenic
TAAGCCAAATCAATCGTTAC+AGG 0.422630 7_3:-80735814 None:intergenic
TTCTCAGCCTTTATTGTCCC+AGG 0.429320 7_3:-80732164 None:intergenic
AGCTTCTTCGCAGCTGCTGT+TGG 0.443853 7_3:+80732107 Msa1128860:CDS
TCTTCCTTTGCCTATATCCC+TGG 0.452747 7_3:+80731964 Msa1128860:CDS
AAGGGGTGGTAGTGCTAGAA+TGG 0.455560 7_3:+80735958 Msa1128860:three_prime_UTR
ATGCTGTTAGGCGGATTCTT+CGG 0.458907 7_3:+80734685 Msa1128860:CDS
CTTCAAGTGGCAAGACTACA+TGG 0.460027 7_3:+80735258 Msa1128860:CDS
TTTGGCTTATTTCAAAGTAA+AGG 0.460436 7_3:+80735828 Msa1128860:three_prime_UTR
GAAACCTGTAAGAGAGGATT+GGG 0.467880 7_3:-80730751 None:intergenic
TTTAGCTCCCCATGTTGTAC+AGG 0.468240 7_3:+80734507 Msa1128860:CDS
AATCGTTGTCAAGCAACAAA+TGG 0.469650 7_3:+80735362 Msa1128860:CDS
GTTGTGATCTCTTTCCTTTG+CGG 0.475078 7_3:+80730479 Msa1128860:CDS
AGTTGCACTTAAATTTGAAT+GGG 0.475690 7_3:+80735589 Msa1128860:three_prime_UTR
TGAAACCTGTAAGAGAGGAT+TGG 0.477635 7_3:-80730752 None:intergenic
ACTTGCAGAATAATTGCATA+GGG 0.478657 7_3:+80732518 Msa1128860:intron
GTTATTGGTATGCCATGGAT+TGG 0.482314 7_3:+80730445 Msa1128860:CDS
CTGTTCCATACATACATAGA+AGG 0.484200 7_3:-80734299 None:intergenic
TGTAGAAAGTACCTCATTAG+TGG 0.485997 7_3:-80734740 None:intergenic
GTTGCACTTAAATAGTATCC+AGG 0.487943 7_3:-80731982 None:intergenic
GGTTTGTTATTGGTATGCCA+TGG 0.488441 7_3:+80730440 Msa1128860:CDS
CATTAGTGGTAGTGTTACTA+AGG 0.495405 7_3:-80734726 None:intergenic
ATGTATGGAACAGTTCTCAT+AGG 0.496520 7_3:+80734309 Msa1128860:CDS
TTGAATTGAATTGGTAGTGA+TGG 0.497799 7_3:+80730412 Msa1128860:exon
TTATTTCGCCTCTCTCTACA+AGG 0.503049 7_3:+80735476 Msa1128860:CDS
TCTTGTGTCTGCAGATGTGT+TGG 0.510557 7_3:+80735735 Msa1128860:three_prime_UTR
TGACCAGCTTTACTGATCCT+GGG 0.517218 7_3:+80732147 Msa1128860:CDS
CTGCAATGCTTTGATCTAGC+AGG 0.517826 7_3:-80732347 None:intergenic
CTCATAGGATTAATTCTCGC+AGG 0.519022 7_3:+80734324 Msa1128860:CDS
GAGAAAGTTAAAAGAAGCGC+AGG 0.522389 7_3:+80735288 Msa1128860:CDS
CAAGACCTTTAATAGCCAAA+AGG 0.522910 7_3:-80735556 None:intergenic
ATCTTAGGAGCATACTCAGT+TGG 0.526715 7_3:-80735527 None:intergenic
TCTCTTTCCTTTGCGGTCGG+TGG 0.528235 7_3:+80730486 Msa1128860:CDS
TGAATTGAATTGGTAGTGAT+GGG 0.533289 7_3:+80730413 Msa1128860:exon
TGATCTCTTTCCTTTGCGGT+CGG 0.537219 7_3:+80730483 Msa1128860:CDS
TTTATTTATATTAGAAGGGG+TGG 0.546752 7_3:+80735944 Msa1128860:three_prime_UTR
TTCAACAGAAAGAACAGCAT+TGG 0.550937 7_3:-80730710 None:intergenic
GGTGGTAGTGCTAGAATGGT+AGG 0.552181 7_3:+80735962 Msa1128860:three_prime_UTR
AATCGTAAGCGCCGAAAGTG+AGG 0.553005 7_3:-80730550 None:intergenic
AAAATTGAAACCTGTAAGAG+AGG 0.557194 7_3:-80730757 None:intergenic
ATAGGCAAAGGAAGAGTTGA+CGG 0.558591 7_3:-80731956 None:intergenic
TGTCCCAGGATCAGTAAAGC+TGG 0.563242 7_3:-80732150 None:intergenic
TACTTGCAGAATAATTGCAT+AGG 0.565761 7_3:+80732517 Msa1128860:intron
CTGTATTGCAGACCTTCAAG+TGG 0.570061 7_3:+80735245 Msa1128860:intron
TACTAAGGCAAAGCTTTGCA+TGG 0.571822 7_3:-80734711 None:intergenic
ATTTGTAATTGTCTTCCTTG+CGG 0.572127 7_3:+80736001 Msa1128860:three_prime_UTR
AAAACCTCACCTGTACAACA+TGG 0.578089 7_3:-80734516 None:intergenic
TTTGCTAATATGAAACAGTA+CGG 0.579676 7_3:-80735763 None:intergenic
CCAAAGCTGTCACCAATCCA+TGG 0.587050 7_3:-80730457 None:intergenic
TGACCATCACTGTGGATGGA+TGG 0.596777 7_3:+80732397 Msa1128860:CDS
TAGTAACACTACCACTAATG+AGG 0.600625 7_3:+80734729 Msa1128860:CDS
AGTGGCAAGACTACATGGAC+TGG 0.601667 7_3:+80735263 Msa1128860:CDS
GATTTGACCATCACTGTGGA+TGG 0.605648 7_3:+80732393 Msa1128860:CDS
AATTGAATTGGTAGTGATGG+GGG 0.605936 7_3:+80730415 Msa1128860:exon
TTGCACTTAAATAGTATCCA+GGG 0.606733 7_3:-80731981 None:intergenic
TAACCATCCATCCACAGTGA+TGG 0.615375 7_3:-80732400 None:intergenic
GCGCTAAAACAAAGTATCAG+TGG 0.615716 7_3:+80735322 Msa1128860:CDS
GTATCCAGGGATATAGGCAA+AGG 0.616666 7_3:-80731968 None:intergenic
ACAATAACTGATAATGTCAG+TGG 0.624954 7_3:+80735861 Msa1128860:three_prime_UTR
TTTCTTGCACAATATTTGGG+AGG 0.625047 7_3:+80735453 Msa1128860:CDS
ACAACTATCACATCCTCCAA+AGG 0.625747 7_3:-80735406 None:intergenic
AAACCTCACCTGTACAACAT+GGG 0.629986 7_3:-80734515 None:intergenic
AACCTCACCTGTACAACATG+GGG 0.636619 7_3:-80734514 None:intergenic
CTAGAATGGTAGGATCATGA+AGG 0.639864 7_3:+80735972 Msa1128860:three_prime_UTR
CTTGCAGAATAATTGCATAG+GGG 0.645521 7_3:+80732519 Msa1128860:intron
AAGGACTGCCTTGTAGAGAG+AGG 0.652736 7_3:-80735484 None:intergenic
ATTGTTGGGATGCTGTTAGG+CGG 0.658661 7_3:+80734676 Msa1128860:CDS
GAATTGAATTGGTAGTGATG+GGG 0.660408 7_3:+80730414 Msa1128860:exon
AAATTGGCCACCGACCGCAA+AGG 0.671025 7_3:-80730493 None:intergenic
TACTCATTGATAATTCCGCA+AGG 0.675295 7_3:-80736016 None:intergenic
GCACGATTTGACCATCACTG+TGG 0.771092 7_3:+80732389 Msa1128860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATATATATATAAAA+AGG - chr7_3:80733931-80733950 None:intergenic 0.0%
!! TATAAAAATAATCTGAAAAT+AGG - chr7_3:80731628-80731647 None:intergenic 10.0%
!!! TTAGTAAAATCTAAAATAAA+CGG - chr7_3:80732488-80732507 None:intergenic 10.0%
!!! CTTTTTTTATTTATATTAGA+AGG + chr7_3:80735939-80735958 Msa1128860:three_prime_UTR 10.0%
!!! TTTTTTATTTATATTAGAAG+GGG + chr7_3:80735941-80735960 Msa1128860:three_prime_UTR 10.0%
!!! TATTTATTTTCACATATTGT+TGG + chr7_3:80731437-80731456 Msa1128860:intron 15.0%
!!! ATTTATTTTCACATATTGTT+GGG + chr7_3:80731438-80731457 Msa1128860:intron 15.0%
!! ACAAAATGATGTTTAAAAAA+AGG - chr7_3:80731852-80731871 None:intergenic 15.0%
!!! TTTTTTTAAACATCATTTTG+TGG + chr7_3:80731851-80731870 Msa1128860:intron 15.0%
!! GAAAAAATGATATTATCATA+AGG - chr7_3:80732215-80732234 None:intergenic 15.0%
!! TAAGTATTAAGGAAATTATA+TGG - chr7_3:80732757-80732776 None:intergenic 15.0%
!! TTCATAAAACTTACTATTTA+AGG - chr7_3:80732842-80732861 None:intergenic 15.0%
!! CTTTAGTATAAATAAGAAAA+GGG - chr7_3:80733161-80733180 None:intergenic 15.0%
!! ACTTTAGTATAAATAAGAAA+AGG - chr7_3:80733162-80733181 None:intergenic 15.0%
!! AAAAATAAAAGTAAAAACTG+AGG + chr7_3:80733341-80733360 Msa1128860:intron 15.0%
!! AAAATAAAAGTAAAAACTGA+GGG + chr7_3:80733342-80733361 Msa1128860:intron 15.0%
!!! TATTTTTTATGAAGTAGAAA+TGG + chr7_3:80733958-80733977 Msa1128860:intron 15.0%
!!! ATTTTTTATGAAGTAGAAAT+GGG + chr7_3:80733959-80733978 Msa1128860:intron 15.0%
!! TAAGTAAAAACACAATTTAT+GGG - chr7_3:80734092-80734111 None:intergenic 15.0%
!! TTAAGTAAAAACACAATTTA+TGG - chr7_3:80734093-80734112 None:intergenic 15.0%
!! AAACAAAACAAAAATATGTA+TGG + chr7_3:80734927-80734946 Msa1128860:intron 15.0%
!! AAGAATAATGTTTACAATAA+AGG + chr7_3:80735430-80735449 Msa1128860:CDS 15.0%
!! TAAAATTAATATCACATTTC+TGG - chr7_3:80735660-80735679 None:intergenic 15.0%
!!! TGTGATATTAATTTTATTGA+AGG + chr7_3:80735664-80735683 Msa1128860:three_prime_UTR 15.0%
!! GAAGTAAATAAATTGATTGA+TGG - chr7_3:80730883-80730902 None:intergenic 20.0%
!!! ATCAATTGTCTTGATTTTAA+TGG + chr7_3:80731027-80731046 Msa1128860:intron 20.0%
!!! AATGAATAAGAGTATAATAG+TGG + chr7_3:80731113-80731132 Msa1128860:intron 20.0%
!!! ATGAATAAGAGTATAATAGT+GGG + chr7_3:80731114-80731133 Msa1128860:intron 20.0%
!! TCTCAAATTATTACTAGATA+TGG - chr7_3:80731290-80731309 None:intergenic 20.0%
!!! ATTATTTTTATAAGCTCTCT+AGG + chr7_3:80731636-80731655 Msa1128860:intron 20.0%
!! TTTCTTATAAGAAATTCATG+AGG - chr7_3:80731820-80731839 None:intergenic 20.0%
!!! TTGAAATTTTCCTTCTTTAT+AGG + chr7_3:80732430-80732449 Msa1128860:intron 20.0%
!!! TGAAATTTTCCTTCTTTATA+GGG + chr7_3:80732431-80732450 Msa1128860:intron 20.0%
!! TTTCCCATAAGAAAATAATA+GGG - chr7_3:80732786-80732805 None:intergenic 20.0%
!! ATTTCCCATAAGAAAATAAT+AGG - chr7_3:80732787-80732806 None:intergenic 20.0%
!!! CGAAATTTGATAATTTTACA+GGG + chr7_3:80733118-80733137 Msa1128860:intron 20.0%
!! AAAAGGGTTTAATAAGTAAA+TGG - chr7_3:80733145-80733164 None:intergenic 20.0%
!!! TTTTTTATGAAGTAGAAATG+GGG + chr7_3:80733960-80733979 Msa1128860:intron 20.0%
!! AAGTAAAAACACAATTTATG+GGG - chr7_3:80734091-80734110 None:intergenic 20.0%
!! GAAAAAATCACAAATAAGAA+TGG - chr7_3:80734262-80734281 None:intergenic 20.0%
!!! ATGGAATTGAAAATTCATTT+TGG + chr7_3:80734482-80734501 Msa1128860:CDS 20.0%
!!! TGGAATTGAAAATTCATTTT+GGG + chr7_3:80734483-80734502 Msa1128860:CDS 20.0%
!! GTAAATTCTAGTAAATTAGA+AGG + chr7_3:80734787-80734806 Msa1128860:intron 20.0%
!!! TTTTTGTTTTGAATGAACAA+AGG - chr7_3:80734839-80734858 None:intergenic 20.0%
!! TTAGTTGAGTTAAATATGTA+TGG + chr7_3:80734897-80734916 Msa1128860:intron 20.0%
!!! TAGCATTTTCTTACAAATAA+CGG - chr7_3:80734965-80734984 None:intergenic 20.0%
!!! TTTCAACTTTGTTTTTGTAA+AGG - chr7_3:80735506-80735525 None:intergenic 20.0%
! CAATCAATAGTTGAAGAAAT+CGG - chr7_3:80730788-80730807 None:intergenic 25.0%
! TGTCAATTGTGATCATAAAT+TGG + chr7_3:80730810-80730829 Msa1128860:intron 25.0%
!! ACATACTTGAAGTACTAAAT+AGG - chr7_3:80730924-80730943 None:intergenic 25.0%
! ACTAAAATACCCTTATTAAG+TGG + chr7_3:80731067-80731086 Msa1128860:intron 25.0%
! TTAACTACTCCACTTAATAA+GGG - chr7_3:80731079-80731098 None:intergenic 25.0%
! CTAACATAGATTTACTAAGT+AGG - chr7_3:80731240-80731259 None:intergenic 25.0%
! GGAATTATAGAAATAGCTTA+TGG + chr7_3:80731592-80731611 Msa1128860:intron 25.0%
! AAATAATCTGAAAATAGGCT+AGG - chr7_3:80731623-80731642 None:intergenic 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + chr7_3:80731785-80731804 Msa1128860:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG + chr7_3:80731786-80731805 Msa1128860:intron 25.0%
!! TCAAGAAAAGAGTACAATAA+CGG - chr7_3:80732031-80732050 None:intergenic 25.0%
!! ATTTCATGGCTTTTCTTTTA+TGG + chr7_3:80732557-80732576 Msa1128860:CDS 25.0%
!!! ATAAGTTTTGTAACAGAAAG+TGG + chr7_3:80732614-80732633 Msa1128860:intron 25.0%
! TAGTTGTTTAATTGTGTACT+GGG - chr7_3:80732718-80732737 None:intergenic 25.0%
! TTAGTTGTTTAATTGTGTAC+TGG - chr7_3:80732719-80732738 None:intergenic 25.0%
! TTCCCATAAGAAAATAATAG+GGG - chr7_3:80732785-80732804 None:intergenic 25.0%
! AATTTGTGTATTCAATGCAT+TGG + chr7_3:80732862-80732881 Msa1128860:intron 25.0%
!! ATGTTTTTCGTCACTAATTT+TGG - chr7_3:80733054-80733073 None:intergenic 25.0%
!!! AACTTGGTGAAAATTTTTAG+AGG + chr7_3:80733086-80733105 Msa1128860:intron 25.0%
!!! ACTTGGTGAAAATTTTTAGA+GGG + chr7_3:80733087-80733106 Msa1128860:intron 25.0%
!!! GCGAAATTTGATAATTTTAC+AGG + chr7_3:80733117-80733136 Msa1128860:intron 25.0%
! AACATCATAACAGGATATTT+CGG - chr7_3:80733456-80733475 None:intergenic 25.0%
! AAATATCCTGTTATGATGTT+GGG + chr7_3:80733456-80733475 Msa1128860:intron 25.0%
! ATAAAAAGGTTCTCCATAAA+AGG - chr7_3:80733917-80733936 None:intergenic 25.0%
!! CATCTAAAATTGAATTTCAC+AGG - chr7_3:80734056-80734075 None:intergenic 25.0%
! TTGTTTCGCTTACATATAAT+AGG + chr7_3:80734114-80734133 Msa1128860:intron 25.0%
!! CATAGTACTACAAATTTTAG+TGG + chr7_3:80734176-80734195 Msa1128860:intron 25.0%
! AATGAAAATGCATACTGTAT+TGG - chr7_3:80734232-80734251 None:intergenic 25.0%
!! ACAGTATGCATTTTCATTTT+AGG + chr7_3:80734234-80734253 Msa1128860:intron 25.0%
! AAAGTTGTCTATATTCTAAC+AGG + chr7_3:80734363-80734382 Msa1128860:CDS 25.0%
! TCTAACAGGTAATATAGATT+TGG + chr7_3:80734377-80734396 Msa1128860:intron 25.0%
! TTACTTACATAGTCATTTCA+AGG - chr7_3:80734771-80734790 None:intergenic 25.0%
!! ATAATACATGATTTGGAAGT+TGG + chr7_3:80734988-80735007 Msa1128860:intron 25.0%
! TAGTTGCACTTAAATTTGAA+TGG + chr7_3:80735588-80735607 Msa1128860:three_prime_UTR 25.0%
! AGTTGCACTTAAATTTGAAT+GGG + chr7_3:80735589-80735608 Msa1128860:three_prime_UTR 25.0%
!! TAATTTTATTGAAGGAGTTC+AGG + chr7_3:80735672-80735691 Msa1128860:three_prime_UTR 25.0%
! TTTGCTAATATGAAACAGTA+CGG - chr7_3:80735766-80735785 None:intergenic 25.0%
!! TTTGGCTTATTTCAAAGTAA+AGG + chr7_3:80735828-80735847 Msa1128860:three_prime_UTR 25.0%
! TTTATTTATATTAGAAGGGG+TGG + chr7_3:80735944-80735963 Msa1128860:three_prime_UTR 25.0%
!! TTGAATTGAATTGGTAGTGA+TGG + chr7_3:80730412-80730431 Msa1128860:exon 30.0%
!! TGAATTGAATTGGTAGTGAT+GGG + chr7_3:80730413-80730432 Msa1128860:exon 30.0%
AAAATTGAAACCTGTAAGAG+AGG - chr7_3:80730760-80730779 None:intergenic 30.0%
!! CACAAACCTATATTTTGAGA+CGG - chr7_3:80730988-80731007 None:intergenic 30.0%
CTTAACTACTCCACTTAATA+AGG - chr7_3:80731080-80731099 None:intergenic 30.0%
! ATTTTCACATATTGTTGGGA+CGG + chr7_3:80731442-80731461 Msa1128860:intron 30.0%
GGTTGAATAATCCATCAATT+TGG - chr7_3:80731496-80731515 None:intergenic 30.0%
!! TAAACACTTTCTGAAACTGT+TGG + chr7_3:80731571-80731590 Msa1128860:intron 30.0%
GATAGCTTATGAAAACAACT+TGG + chr7_3:80731658-80731677 Msa1128860:intron 30.0%
TAAGTTGTTTATCCAAACAG+GGG + chr7_3:80731787-80731806 Msa1128860:intron 30.0%
TAAATAGTATCCAGGGATAT+AGG - chr7_3:80731977-80731996 None:intergenic 30.0%
TTGCACTTAAATAGTATCCA+GGG - chr7_3:80731984-80732003 None:intergenic 30.0%
TTTGCTGCTAGTGTTAAATT+TGG + chr7_3:80732273-80732292 Msa1128860:intron 30.0%
TACTTGCAGAATAATTGCAT+AGG + chr7_3:80732517-80732536 Msa1128860:intron 30.0%
ACTTGCAGAATAATTGCATA+GGG + chr7_3:80732518-80732537 Msa1128860:intron 30.0%
AGTTGTTTAATTGTGTACTG+GGG - chr7_3:80732717-80732736 None:intergenic 30.0%
! TGCCCCTATTATTTTCTTAT+GGG + chr7_3:80732780-80732799 Msa1128860:intron 30.0%
!! CTCTGGGATAAATAAGAAAA+GGG - chr7_3:80732973-80732992 None:intergenic 30.0%
!! ACTCTGGGATAAATAAGAAA+AGG - chr7_3:80732974-80732993 None:intergenic 30.0%
TTAGTGACGAAAAACATTTG+AGG + chr7_3:80733057-80733076 Msa1128860:intron 30.0%
TAGTGACGAAAAACATTTGA+GGG + chr7_3:80733058-80733077 Msa1128860:intron 30.0%
AAGAGTCCAAAATCAAAATG+TGG - chr7_3:80733232-80733251 None:intergenic 30.0%
AACTTCTTCATAAAAGAAGC+TGG + chr7_3:80733305-80733324 Msa1128860:intron 30.0%
ACTTCTTCATAAAAGAAGCT+GGG + chr7_3:80733306-80733325 Msa1128860:intron 30.0%
AATAGTATTACCCAAGGTAA+AGG - chr7_3:80733373-80733392 None:intergenic 30.0%
TTGAACTTCAGATAGAAACT+TGG + chr7_3:80733427-80733446 Msa1128860:intron 30.0%
GAAATATCCTGTTATGATGT+TGG + chr7_3:80733455-80733474 Msa1128860:intron 30.0%
AAAGATTTAAAGGTTGTTGC+AGG - chr7_3:80733507-80733526 None:intergenic 30.0%
AAATGAAGAGTTACTGTTCA+TGG - chr7_3:80733586-80733605 None:intergenic 30.0%
ACAAGATTTGACTGTAAACT+TGG + chr7_3:80733657-80733676 Msa1128860:intron 30.0%
ATCATAACCCACACAAAATT+TGG + chr7_3:80733887-80733906 Msa1128860:intron 30.0%
!!! AAAATTTGGTGCACCTTTTA+TGG + chr7_3:80733901-80733920 Msa1128860:intron 30.0%
CATTTCCTTCTATGTATGTA+TGG + chr7_3:80734294-80734313 Msa1128860:CDS 30.0%
CGTAACTTTGCAGTTTATTA+TGG + chr7_3:80734463-80734482 Msa1128860:intron 30.0%
! TCTTCCTATTTTCCATTTTG+TGG + chr7_3:80734577-80734596 Msa1128860:intron 30.0%
TTGACCACAAAATGGAAAAT+AGG - chr7_3:80734584-80734603 None:intergenic 30.0%
ACATATCATTGACCACAAAA+TGG - chr7_3:80734592-80734611 None:intergenic 30.0%
GATATGTTATTATCATGCAG+TGG + chr7_3:80734605-80734624 Msa1128860:intron 30.0%
TATTATCATGCAGTGGTTAT+TGG + chr7_3:80734612-80734631 Msa1128860:intron 30.0%
ATTATCATGCAGTGGTTATT+GGG + chr7_3:80734613-80734632 Msa1128860:intron 30.0%
ATGAGATCACTGATGTTATA+GGG - chr7_3:80734863-80734882 None:intergenic 30.0%
AATGAGATCACTGATGTTAT+AGG - chr7_3:80734864-80734883 None:intergenic 30.0%
GCTAAGCATAATACATGATT+TGG + chr7_3:80734981-80735000 Msa1128860:intron 30.0%
ATAAACAAGATGCAGAGAAA+GGG - chr7_3:80735148-80735167 None:intergenic 30.0%
AATAAACAAGATGCAGAGAA+AGG - chr7_3:80735149-80735168 None:intergenic 30.0%
! TCTGCATCTTGTTTATTTAG+AGG + chr7_3:80735152-80735171 Msa1128860:intron 30.0%
! CTGCATCTTGTTTATTTAGA+GGG + chr7_3:80735153-80735172 Msa1128860:intron 30.0%
! TGCATCTTGTTTATTTAGAG+GGG + chr7_3:80735154-80735173 Msa1128860:intron 30.0%
AAGGTTTCTTGCACAATATT+TGG + chr7_3:80735449-80735468 Msa1128860:CDS 30.0%
AGGTTTCTTGCACAATATTT+GGG + chr7_3:80735450-80735469 Msa1128860:CDS 30.0%
GGCTTTCACAATGATTTATA+GGG - chr7_3:80735639-80735658 None:intergenic 30.0%
TGGCTTTCACAATGATTTAT+AGG - chr7_3:80735640-80735659 None:intergenic 30.0%
TATACCTGTAACGATTGATT+TGG + chr7_3:80735810-80735829 Msa1128860:three_prime_UTR 30.0%
! ACAATAACTGATAATGTCAG+TGG + chr7_3:80735861-80735880 Msa1128860:three_prime_UTR 30.0%
ATTTGTAATTGTCTTCCTTG+CGG + chr7_3:80736001-80736020 Msa1128860:three_prime_UTR 30.0%
GTAAACCTTATTCAGAGATA+TGG + chr7_3:80736036-80736055 Msa1128860:three_prime_UTR 30.0%
!! GAATTGAATTGGTAGTGATG+GGG + chr7_3:80730414-80730433 Msa1128860:exon 35.0%
!! AATTGAATTGGTAGTGATGG+GGG + chr7_3:80730415-80730434 Msa1128860:exon 35.0%
!! ATGAAAGTGCCTTCGAAAAT+TGG - chr7_3:80730512-80730531 None:intergenic 35.0%
ATTCACTGTTTCCTCACTTT+CGG + chr7_3:80730539-80730558 Msa1128860:CDS 35.0%
TTCAACAGAAAGAACAGCAT+TGG - chr7_3:80730713-80730732 None:intergenic 35.0%
!!! AAACCTATATTTTGAGACGG+AGG - chr7_3:80730985-80731004 None:intergenic 35.0%
TGGAGAGAGAATGATACTTT+AGG + chr7_3:80731468-80731487 Msa1128860:intron 35.0%
GGAGAGAGAATGATACTTTA+GGG + chr7_3:80731469-80731488 Msa1128860:intron 35.0%
! TACTTTAGGGACCAAATTGA+TGG + chr7_3:80731482-80731501 Msa1128860:intron 35.0%
ATTCAACCAAATTGTGACTC+AGG + chr7_3:80731508-80731527 Msa1128860:intron 35.0%
TTCAACCAAATTGTGACTCA+GGG + chr7_3:80731509-80731528 Msa1128860:intron 35.0%
GTTGCACTTAAATAGTATCC+AGG - chr7_3:80731985-80732004 None:intergenic 35.0%
TTTAAGTGCAACTCACAAGT+AGG + chr7_3:80731993-80732012 Msa1128860:intron 35.0%
TTAAGTGCAACTCACAAGTA+GGG + chr7_3:80731994-80732013 Msa1128860:intron 35.0%
!!! TCACTTTGGAATTTTGCAAG+TGG - chr7_3:80732252-80732271 None:intergenic 35.0%
CTTAAGTGACCCTATAAAGA+AGG - chr7_3:80732443-80732462 None:intergenic 35.0%
CTTGCAGAATAATTGCATAG+GGG + chr7_3:80732519-80732538 Msa1128860:intron 35.0%
GAGAAACACTCGATATTTCA+TGG + chr7_3:80732543-80732562 Msa1128860:CDS 35.0%
TTTATGGTGAGCTCTATATG+TGG + chr7_3:80732573-80732592 Msa1128860:intron 35.0%
TAGGGGCAGAATAAGTATTA+AGG - chr7_3:80732768-80732787 None:intergenic 35.0%
! CTGCCCCTATTATTTTCTTA+TGG + chr7_3:80732779-80732798 Msa1128860:intron 35.0%
! TCTTATTTATCCCAGAGTAC+AGG + chr7_3:80732976-80732995 Msa1128860:intron 35.0%
AGTCAACTCCATTTAACAGT+TGG + chr7_3:80733026-80733045 Msa1128860:intron 35.0%
GTCAACTCCATTTAACAGTT+GGG + chr7_3:80733027-80733046 Msa1128860:intron 35.0%
! TTTTGGTCCCAACTGTTAAA+TGG - chr7_3:80733037-80733056 None:intergenic 35.0%
ACATTTGAGGGACTAAAACT+TGG + chr7_3:80733070-80733089 Msa1128860:intron 35.0%
! CGGAAAACAAGTCTAAAATG+TGG - chr7_3:80733192-80733211 None:intergenic 35.0%
!!! TCATGGCCACATTTTGATTT+TGG + chr7_3:80733223-80733242 Msa1128860:intron 35.0%
CATCTCAATAGTATTACCCA+AGG - chr7_3:80733379-80733398 None:intergenic 35.0%
TTTGACTGTAAACTTGGACT+TGG + chr7_3:80733663-80733682 Msa1128860:intron 35.0%
TTGACTGTAAACTTGGACTT+GGG + chr7_3:80733664-80733683 Msa1128860:intron 35.0%
! TCCTCGATTTCCTTTTTGTT+GGG + chr7_3:80733687-80733706 Msa1128860:intron 35.0%
! TTTTTGTTGGGGTTGCAATT+GGG + chr7_3:80733699-80733718 Msa1128860:intron 35.0%
! GTTGCAATTGGGATTTTATC+CGG + chr7_3:80733710-80733729 Msa1128860:intron 35.0%
! TTGCAATTGGGATTTTATCC+GGG + chr7_3:80733711-80733730 Msa1128860:intron 35.0%
GAGAAGTTGTAACGTAATGT+GGG + chr7_3:80733754-80733773 Msa1128860:intron 35.0%
! CTAATATGACTGGTTATAGC+AGG - chr7_3:80733988-80734007 None:intergenic 35.0%
CTGCTATAACCAGTCATATT+AGG + chr7_3:80733986-80734005 Msa1128860:intron 35.0%
CTATAACCAGTCATATTAGG+AGG + chr7_3:80733989-80734008 Msa1128860:intron 35.0%
CACATTGGACCTTAAAGAAA+GGG + chr7_3:80734014-80734033 Msa1128860:intron 35.0%
ACATTGGACCTTAAAGAAAG+GGG + chr7_3:80734015-80734034 Msa1128860:intron 35.0%
!!! GTGATTTTTTCGTGTCTTGT+AGG + chr7_3:80734271-80734290 Msa1128860:intron 35.0%
CTGTTCCATACATACATAGA+AGG - chr7_3:80734302-80734321 None:intergenic 35.0%
ATGTATGGAACAGTTCTCAT+AGG + chr7_3:80734309-80734328 Msa1128860:CDS 35.0%
! AAGAAGAATCTGAGTGTTGT+AGG - chr7_3:80734641-80734660 None:intergenic 35.0%
! ATAGTTTTCGTTGCGATTGT+TGG + chr7_3:80734661-80734680 Msa1128860:CDS 35.0%
! TAGTTTTCGTTGCGATTGTT+GGG + chr7_3:80734662-80734681 Msa1128860:CDS 35.0%
! CATTAGTGGTAGTGTTACTA+AGG - chr7_3:80734729-80734748 None:intergenic 35.0%
TAGTAACACTACCACTAATG+AGG + chr7_3:80734729-80734748 Msa1128860:CDS 35.0%
!! TGTAGAAAGTACCTCATTAG+TGG - chr7_3:80734743-80734762 None:intergenic 35.0%
! AATGAGGTACTTTCTACATC+TGG + chr7_3:80734745-80734764 Msa1128860:intron 35.0%
TGAATGAACAAAGGAGAGTA+TGG - chr7_3:80734830-80734849 None:intergenic 35.0%
CATCAGTGATCTCATTACTA+TGG + chr7_3:80734868-80734887 Msa1128860:intron 35.0%
!! CTTACAAATAACGGACATAG+CGG - chr7_3:80734956-80734975 None:intergenic 35.0%
TGACAAAATGACATCTTTGC+TGG + chr7_3:80735045-80735064 Msa1128860:intron 35.0%
AATTGCAGCAGGATTTAAAC+TGG - chr7_3:80735077-80735096 None:intergenic 35.0%
AATTCTCATCAAATTGCAGC+AGG - chr7_3:80735088-80735107 None:intergenic 35.0%
TAACTAGTGCTTCTGATAAG+CGG - chr7_3:80735185-80735204 None:intergenic 35.0%
CACTAGTTATACCACAAACA+TGG + chr7_3:80735196-80735215 Msa1128860:intron 35.0%
AATCGTTGTCAAGCAACAAA+TGG + chr7_3:80735362-80735381 Msa1128860:CDS 35.0%
TTTCTTGCACAATATTTGGG+AGG + chr7_3:80735453-80735472 Msa1128860:CDS 35.0%
!! CGTTTCCTTTTGGCTATTAA+AGG + chr7_3:80735551-80735570 Msa1128860:three_prime_UTR 35.0%
CAAGACCTTTAATAGCCAAA+AGG - chr7_3:80735559-80735578 None:intergenic 35.0%
!! CTTTTGGCTATTAAAGGTCT+TGG + chr7_3:80735557-80735576 Msa1128860:three_prime_UTR 35.0%
TAAGCCAAATCAATCGTTAC+AGG - chr7_3:80735817-80735836 None:intergenic 35.0%
! TACTCATTGATAATTCCGCA+AGG - chr7_3:80736019-80736038 None:intergenic 35.0%
!! GGTTTGTTATTGGTATGCCA+TGG + chr7_3:80730440-80730459 Msa1128860:CDS 40.0%
GTTATTGGTATGCCATGGAT+TGG + chr7_3:80730445-80730464 Msa1128860:CDS 40.0%
GTTGTGATCTCTTTCCTTTG+CGG + chr7_3:80730479-80730498 Msa1128860:CDS 40.0%
GAGAGAGTTAGTTACAGTAC+AGG - chr7_3:80730580-80730599 None:intergenic 40.0%
!! CGTTTTATTGGCGCTGTTTT+TGG + chr7_3:80730676-80730695 Msa1128860:CDS 40.0%
GAAACCTGTAAGAGAGGATT+GGG - chr7_3:80730754-80730773 None:intergenic 40.0%
TGAAACCTGTAAGAGAGGAT+TGG - chr7_3:80730755-80730774 None:intergenic 40.0%
CTTCCTCCGTCTCAAAATAT+AGG + chr7_3:80730979-80730998 Msa1128860:intron 40.0%
ACATATTGTTGGGACGGAAT+TGG + chr7_3:80731448-80731467 Msa1128860:intron 40.0%
TCAACCAAATTGTGACTCAG+GGG + chr7_3:80731510-80731529 Msa1128860:intron 40.0%
! CATTTTGTGGTGTTCTCTGT+TGG + chr7_3:80731864-80731883 Msa1128860:intron 40.0%
ATAGGCAAAGGAAGAGTTGA+CGG - chr7_3:80731959-80731978 None:intergenic 40.0%
CCTAAGGTCTAACAGAATTC+AGG - chr7_3:80732081-80732100 None:intergenic 40.0%
CCTGAATTCTGTTAGACCTT+AGG + chr7_3:80732078-80732097 Msa1128860:intron 40.0%
TACTGATCCTGGGACAATAA+AGG + chr7_3:80732157-80732176 Msa1128860:CDS 40.0%
!! TAATCCTTAAAGAGTGCCAC+AGG + chr7_3:80732929-80732948 Msa1128860:intron 40.0%
!! AATCCTTAAAGAGTGCCACA+GGG + chr7_3:80732930-80732949 Msa1128860:intron 40.0%
TTTCCGCATGATTCAGATCA+TGG + chr7_3:80733206-80733225 Msa1128860:intron 40.0%
TGAGGGAATTTCCTTTACCT+TGG + chr7_3:80733359-80733378 Msa1128860:intron 40.0%
GAGGGAATTTCCTTTACCTT+GGG + chr7_3:80733360-80733379 Msa1128860:intron 40.0%
TCAGAACCCAACATCATAAC+AGG - chr7_3:80733465-80733484 None:intergenic 40.0%
! GTCCTCGATTTCCTTTTTGT+TGG + chr7_3:80733686-80733705 Msa1128860:intron 40.0%
! CCTCGATTTCCTTTTTGTTG+GGG + chr7_3:80733688-80733707 Msa1128860:intron 40.0%
CAATTGCAACCCCAACAAAA+AGG - chr7_3:80733700-80733719 None:intergenic 40.0%
! CTTTTTGTTGGGGTTGCAAT+TGG + chr7_3:80733698-80733717 Msa1128860:intron 40.0%
GGAGAAGTTGTAACGTAATG+TGG + chr7_3:80733753-80733772 Msa1128860:intron 40.0%
TATGATTGCAATGGAGTTGG+TGG - chr7_3:80733873-80733892 None:intergenic 40.0%
GGTTATGATTGCAATGGAGT+TGG - chr7_3:80733876-80733895 None:intergenic 40.0%
! TGTGTGGGTTATGATTGCAA+TGG - chr7_3:80733882-80733901 None:intergenic 40.0%
! AGGTGCACCAAATTTTGTGT+GGG - chr7_3:80733897-80733916 None:intergenic 40.0%
! AAGGTGCACCAAATTTTGTG+TGG - chr7_3:80733898-80733917 None:intergenic 40.0%
TCATATTAGGAGGTCCACAT+TGG + chr7_3:80733999-80734018 Msa1128860:intron 40.0%
!! CCTTTCTTTAAGGTCCAATG+TGG - chr7_3:80734016-80734035 None:intergenic 40.0%
CCACATTGGACCTTAAAGAA+AGG + chr7_3:80734013-80734032 Msa1128860:intron 40.0%
AATTCGGTCCCCTTTCTTTA+AGG - chr7_3:80734026-80734045 None:intergenic 40.0%
TAAAGAAAGGGGACCGAATT+AGG + chr7_3:80734026-80734045 Msa1128860:intron 40.0%
AAAGAAAGGGGACCGAATTA+GGG + chr7_3:80734027-80734046 Msa1128860:intron 40.0%
CTCATAGGATTAATTCTCGC+AGG + chr7_3:80734324-80734343 Msa1128860:CDS 40.0%
AAACCTCACCTGTACAACAT+GGG - chr7_3:80734518-80734537 None:intergenic 40.0%
AAAACCTCACCTGTACAACA+TGG - chr7_3:80734519-80734538 None:intergenic 40.0%
TACTAAGGCAAAGCTTTGCA+TGG - chr7_3:80734714-80734733 None:intergenic 40.0%
TGCATTGAGTTCCATGTTTG+TGG - chr7_3:80735210-80735229 None:intergenic 40.0%
ATGGAACTCAATGCAGCTAA+TGG + chr7_3:80735215-80735234 Msa1128860:intron 40.0%
! GAGAAAGTTAAAAGAAGCGC+AGG + chr7_3:80735288-80735307 Msa1128860:CDS 40.0%
! GCGCTAAAACAAAGTATCAG+TGG + chr7_3:80735322-80735341 Msa1128860:CDS 40.0%
TTATTTCGCCTCTCTCTACA+AGG + chr7_3:80735476-80735495 Msa1128860:CDS 40.0%
! ATCTTAGGAGCATACTCAGT+TGG - chr7_3:80735530-80735549 None:intergenic 40.0%
! TCCTAAGATGCGTTTCCTTT+TGG + chr7_3:80735541-80735560 Msa1128860:three_prime_UTR 40.0%
! CTATTAAAGGTCTTGGTAGC+TGG + chr7_3:80735564-80735583 Msa1128860:three_prime_UTR 40.0%
CTAGAATGGTAGGATCATGA+AGG + chr7_3:80735972-80735991 Msa1128860:three_prime_UTR 40.0%
TGGAGCCATATCTCTGAATA+AGG - chr7_3:80736044-80736063 None:intergenic 40.0%
!! GATGGGGGTAGGTTTGTTAT+TGG + chr7_3:80730430-80730449 Msa1128860:exon 45.0%
TGATCTCTTTCCTTTGCGGT+CGG + chr7_3:80730483-80730502 Msa1128860:CDS 45.0%
ACAGAGAGAGAGTGAGATTG+AGG - chr7_3:80730641-80730660 None:intergenic 45.0%
CTCTCTGTAATCTCTCTCTC+AGG + chr7_3:80730653-80730672 Msa1128860:intron 45.0%
! CTCTCTCTCAGGCGTTTTAT+TGG + chr7_3:80730664-80730683 Msa1128860:intron 45.0%
AACACGACACTCCTTTGATC+AGG + chr7_3:80731349-80731368 Msa1128860:intron 45.0%
ACACGACACTCCTTTGATCA+GGG + chr7_3:80731350-80731369 Msa1128860:intron 45.0%
ACTCCTTTGATCAGGGGAAT+CGG + chr7_3:80731357-80731376 Msa1128860:intron 45.0%
TGAGGTATAATGCCCCTGTT+TGG - chr7_3:80731802-80731821 None:intergenic 45.0%
TCTTCCTTTGCCTATATCCC+TGG + chr7_3:80731964-80731983 Msa1128860:CDS 45.0%
GTATCCAGGGATATAGGCAA+AGG - chr7_3:80731971-80731990 None:intergenic 45.0%
AGAGTACAATAACGGCGTGT+CGG - chr7_3:80732023-80732042 None:intergenic 45.0%
CGAAGAAGCTTGTGTACCTA+AGG - chr7_3:80732097-80732116 None:intergenic 45.0%
TTGACCAGCTTTACTGATCC+TGG + chr7_3:80732146-80732165 Msa1128860:CDS 45.0%
TGACCAGCTTTACTGATCCT+GGG + chr7_3:80732147-80732166 Msa1128860:CDS 45.0%
TTCTCAGCCTTTATTGTCCC+AGG - chr7_3:80732167-80732186 None:intergenic 45.0%
CACTAGCAGCAAACTCACTT+TGG - chr7_3:80732266-80732285 None:intergenic 45.0%
CTGCAATGCTTTGATCTAGC+AGG - chr7_3:80732350-80732369 None:intergenic 45.0%
GATTTGACCATCACTGTGGA+TGG + chr7_3:80732393-80732412 Msa1128860:CDS 45.0%
TAACCATCCATCCACAGTGA+TGG - chr7_3:80732403-80732422 None:intergenic 45.0%
!! AAGGTGCTTAAAGAGTGTCC+CGG - chr7_3:80732823-80732842 None:intergenic 45.0%
!! ATCCTTAAAGAGTGCCACAG+GGG + chr7_3:80732931-80732950 Msa1128860:intron 45.0%
TGGCCATGATCTGAATCATG+CGG - chr7_3:80733212-80733231 None:intergenic 45.0%
TGACGATCACACAAAACACG+AGG + chr7_3:80733397-80733416 Msa1128860:intron 45.0%
CCCCAACAAAAAGGAAATCG+AGG - chr7_3:80733691-80733710 None:intergenic 45.0%
TATCCGGGTCGTTTATGTGA+TGG + chr7_3:80733726-80733745 Msa1128860:intron 45.0%
ATCCGGGTCGTTTATGTGAT+GGG + chr7_3:80733727-80733746 Msa1128860:intron 45.0%
ATCCCATCACATAAACGACC+CGG - chr7_3:80733732-80733751 None:intergenic 45.0%
! GGTCGTTTATGTGATGGGAT+GGG + chr7_3:80733732-80733751 Msa1128860:intron 45.0%
CAGAGTGAAAGTGAAGGAGA+GGG - chr7_3:80733816-80733835 None:intergenic 45.0%
ACAGAGTGAAAGTGAAGGAG+AGG - chr7_3:80733817-80733836 None:intergenic 45.0%
TGTGGACCTCCTAATATGAC+TGG - chr7_3:80733998-80734017 None:intergenic 45.0%
AAGAAAGGGGACCGAATTAG+GGG + chr7_3:80734028-80734047 Msa1128860:intron 45.0%
TTTCACAGGAGCCCCTAATT+CGG - chr7_3:80734042-80734061 None:intergenic 45.0%
! TTAGTGGCTGATTTCTGCTC+TGG + chr7_3:80734192-80734211 Msa1128860:intron 45.0%
! TTTAGCTCCCCATGTTGTAC+AGG + chr7_3:80734507-80734526 Msa1128860:CDS 45.0%
AACCTCACCTGTACAACATG+GGG - chr7_3:80734517-80734536 None:intergenic 45.0%
ATTGTTGGGATGCTGTTAGG+CGG + chr7_3:80734676-80734695 Msa1128860:CDS 45.0%
! ATGCTGTTAGGCGGATTCTT+CGG + chr7_3:80734685-80734704 Msa1128860:CDS 45.0%
!! GAGTATGGCTTGCTACTTTC+TGG - chr7_3:80734815-80734834 None:intergenic 45.0%
CTGTATTGCAGACCTTCAAG+TGG + chr7_3:80735245-80735264 Msa1128860:intron 45.0%
! CATGTAGTCTTGCCACTTGA+AGG - chr7_3:80735260-80735279 None:intergenic 45.0%
CTTCAAGTGGCAAGACTACA+TGG + chr7_3:80735258-80735277 Msa1128860:CDS 45.0%
GCCAAAAGGAAACGCATCTT+AGG - chr7_3:80735545-80735564 None:intergenic 45.0%
TCTTGTGTCTGCAGATGTGT+TGG + chr7_3:80735735-80735754 Msa1128860:three_prime_UTR 45.0%
!!! TTTTTATAATAAAGATTTAA+AGG - chr7_3:80733517-80733536 None:intergenic 5.0%
!!! TTTTTTTATTTATATTAGAA+GGG + chr7_3:80735940-80735959 Msa1128860:three_prime_UTR 5.0%
!! GAATTGGTAGTGATGGGGGT+AGG + chr7_3:80730419-80730438 Msa1128860:exon 50.0%
CCAAAGCTGTCACCAATCCA+TGG - chr7_3:80730460-80730479 None:intergenic 50.0%
!! CCATGGATTGGTGACAGCTT+TGG + chr7_3:80730457-80730476 Msa1128860:CDS 50.0%
!! AATCGTAAGCGCCGAAAGTG+AGG - chr7_3:80730553-80730572 None:intergenic 50.0%
TCGTCCCAATCCTCTCTTAC+AGG + chr7_3:80730747-80730766 Msa1128860:CDS 50.0%
CACGACACTCCTTTGATCAG+GGG + chr7_3:80731351-80731370 Msa1128860:intron 50.0%
CAGACCCCTGAGTCACAATT+TGG - chr7_3:80731517-80731536 None:intergenic 50.0%
TTGTGACTCAGGGGTCTGTT+TGG + chr7_3:80731519-80731538 Msa1128860:intron 50.0%
GAGTACAATAACGGCGTGTC+GGG - chr7_3:80732022-80732041 None:intergenic 50.0%
TGTCCCAGGATCAGTAAAGC+TGG - chr7_3:80732153-80732172 None:intergenic 50.0%
GCACGATTTGACCATCACTG+TGG + chr7_3:80732389-80732408 Msa1128860:CDS 50.0%
TGACCATCACTGTGGATGGA+TGG + chr7_3:80732397-80732416 Msa1128860:CDS 50.0%
!! AGGTGCTTAAAGAGTGTCCC+GGG - chr7_3:80732822-80732841 None:intergenic 50.0%
ATCCCAGAGTACAGGTACAC+AGG + chr7_3:80732984-80733003 Msa1128860:intron 50.0%
TCCCAGAGTACAGGTACACA+GGG + chr7_3:80732985-80733004 Msa1128860:intron 50.0%
! GGAGTTGACTGACTCTGACA+TGG - chr7_3:80733016-80733035 None:intergenic 50.0%
! GGGTCGTTTATGTGATGGGA+TGG + chr7_3:80733731-80733750 Msa1128860:intron 50.0%
GGTGGACAGAGTGAAAGTGA+AGG - chr7_3:80733822-80733841 None:intergenic 50.0%
!! TGGAGTTGGTGGAGATACAG+CGG - chr7_3:80733862-80733881 None:intergenic 50.0%
GCGATTGTTGGGATGCTGTT+AGG + chr7_3:80734673-80734692 Msa1128860:CDS 50.0%
AGTGGCAAGACTACATGGAC+TGG + chr7_3:80735263-80735282 Msa1128860:CDS 50.0%
!!! TTGTTTTAGCGCTGCAGCAC+TGG - chr7_3:80735314-80735333 None:intergenic 50.0%
AAGGACTGCCTTGTAGAGAG+AGG - chr7_3:80735487-80735506 None:intergenic 50.0%
! AAGGGGTGGTAGTGCTAGAA+TGG + chr7_3:80735958-80735977 Msa1128860:three_prime_UTR 50.0%
! GGTGGTAGTGCTAGAATGGT+AGG + chr7_3:80735962-80735981 Msa1128860:three_prime_UTR 50.0%
TCTCTTTCCTTTGCGGTCGG+TGG + chr7_3:80730486-80730505 Msa1128860:CDS 55.0%
AAATTGGCCACCGACCGCAA+AGG - chr7_3:80730496-80730515 None:intergenic 55.0%
! GGTCGGTGGCCAATTTTCGA+AGG + chr7_3:80730500-80730519 Msa1128860:CDS 55.0%
!! GCACCGATTCCCCTGATCAA+AGG - chr7_3:80731363-80731382 None:intergenic 55.0%
!! CAGGGGAATCGGTGCTACAA+AGG + chr7_3:80731368-80731387 Msa1128860:intron 55.0%
AGCTTCTTCGCAGCTGCTGT+TGG + chr7_3:80732107-80732126 Msa1128860:CDS 55.0%
TGTGTACTGGGGCAGTCATG+CGG - chr7_3:80732706-80732725 None:intergenic 55.0%
!! GTGCTTAAAGAGTGTCCCGG+GGG - chr7_3:80732820-80732839 None:intergenic 55.0%
!! GGTGCTTAAAGAGTGTCCCG+GGG - chr7_3:80732821-80732840 None:intergenic 55.0%
GTCCCCTGTGGCACTCTTTA+AGG - chr7_3:80732936-80732955 None:intergenic 55.0%
TTGCTAACGAGTGTCCCCTG+TGG - chr7_3:80732948-80732967 None:intergenic 55.0%
GCCCTGTGTACCTGTACTCT+GGG - chr7_3:80732989-80733008 None:intergenic 55.0%
TGCCCTGTGTACCTGTACTC+TGG - chr7_3:80732990-80733009 None:intergenic 55.0%
CTCCCCATGTTGTACAGGTG+AGG + chr7_3:80734512-80734531 Msa1128860:intron 55.0%
TACTGGGGCAGTCATGCGGT+AGG - chr7_3:80732702-80732721 None:intergenic 60.0%
GGAAATGCTAGCAGTGCCCC+CGG + chr7_3:80732801-80732820 Msa1128860:intron 60.0%
GAAATGCTAGCAGTGCCCCC+GGG + chr7_3:80732802-80732821 Msa1128860:intron 60.0%
GGTGGAGATACAGCGGACCA+CGG - chr7_3:80733855-80733874 None:intergenic 60.0%
GGCAGTCATGCGGTAGGACG+AGG - chr7_3:80732696-80732715 None:intergenic 65.0%
TACAGCGGACCACGGAGGCA+GGG - chr7_3:80733847-80733866 None:intergenic 65.0%
ATACAGCGGACCACGGAGGC+AGG - chr7_3:80733848-80733867 None:intergenic 65.0%
GGAGATACAGCGGACCACGG+AGG - chr7_3:80733852-80733871 None:intergenic 65.0%
GTCCACCCTCCCTGCCTCCG+TGG + chr7_3:80733835-80733854 Msa1128860:intron 75.0%
GACCACGGAGGCAGGGAGGG+TGG - chr7_3:80733840-80733859 None:intergenic 75.0%
GCGGACCACGGAGGCAGGGA+GGG - chr7_3:80733843-80733862 None:intergenic 75.0%
AGCGGACCACGGAGGCAGGG+AGG - chr7_3:80733844-80733863 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 80730411 80736066 80730411 ID=Msa1128860;Name=Msa1128860
chr7_3 mRNA 80730411 80736066 80730411 ID=Msa1128860-mRNA-1;Parent=Msa1128860;Name=Msa1128860-mRNA-1;_AED=0.13;_eAED=0.13;_QI=20|1|1|1|1|1|10|532|393
chr7_3 exon 80730411 80730579 80730411 ID=Msa1128860-mRNA-1:exon:23249;Parent=Msa1128860-mRNA-1
chr7_3 exon 80730675 80730768 80730675 ID=Msa1128860-mRNA-1:exon:23250;Parent=Msa1128860-mRNA-1
chr7_3 exon 80731916 80732010 80731916 ID=Msa1128860-mRNA-1:exon:23251;Parent=Msa1128860-mRNA-1
chr7_3 exon 80732100 80732267 80732100 ID=Msa1128860-mRNA-1:exon:23252;Parent=Msa1128860-mRNA-1
chr7_3 exon 80732346 80732418 80732346 ID=Msa1128860-mRNA-1:exon:23253;Parent=Msa1128860-mRNA-1
chr7_3 exon 80732526 80732578 80732526 ID=Msa1128860-mRNA-1:exon:23254;Parent=Msa1128860-mRNA-1
chr7_3 exon 80734293 80734384 80734293 ID=Msa1128860-mRNA-1:exon:23255;Parent=Msa1128860-mRNA-1
chr7_3 exon 80734476 80734528 80734476 ID=Msa1128860-mRNA-1:exon:23256;Parent=Msa1128860-mRNA-1
chr7_3 exon 80734625 80734750 80734625 ID=Msa1128860-mRNA-1:exon:23257;Parent=Msa1128860-mRNA-1
chr7_3 exon 80735256 80736066 80735256 ID=Msa1128860-mRNA-1:exon:23258;Parent=Msa1128860-mRNA-1
chr7_3 five_prime_UTR 80730411 80730430 80730411 ID=Msa1128860-mRNA-1:five_prime_utr;Parent=Msa1128860-mRNA-1
chr7_3 CDS 80730431 80730579 80730431 ID=Msa1128860-mRNA-1:cds;Parent=Msa1128860-mRNA-1
chr7_3 CDS 80730675 80730768 80730675 ID=Msa1128860-mRNA-1:cds;Parent=Msa1128860-mRNA-1
chr7_3 CDS 80731916 80732010 80731916 ID=Msa1128860-mRNA-1:cds;Parent=Msa1128860-mRNA-1
chr7_3 CDS 80732100 80732267 80732100 ID=Msa1128860-mRNA-1:cds;Parent=Msa1128860-mRNA-1
chr7_3 CDS 80732346 80732418 80732346 ID=Msa1128860-mRNA-1:cds;Parent=Msa1128860-mRNA-1
chr7_3 CDS 80732526 80732578 80732526 ID=Msa1128860-mRNA-1:cds;Parent=Msa1128860-mRNA-1
chr7_3 CDS 80734293 80734384 80734293 ID=Msa1128860-mRNA-1:cds;Parent=Msa1128860-mRNA-1
chr7_3 CDS 80734476 80734528 80734476 ID=Msa1128860-mRNA-1:cds;Parent=Msa1128860-mRNA-1
chr7_3 CDS 80734625 80734750 80734625 ID=Msa1128860-mRNA-1:cds;Parent=Msa1128860-mRNA-1
chr7_3 CDS 80735256 80735534 80735256 ID=Msa1128860-mRNA-1:cds;Parent=Msa1128860-mRNA-1
chr7_3 three_prime_UTR 80735535 80736066 80735535 ID=Msa1128860-mRNA-1:three_prime_utr;Parent=Msa1128860-mRNA-1
Gene Sequence

>Msa1128860

ATGGGGGTAGGTTTGTTATTGGTATGCCATGGATTGGTGACAGCTTTGGTTGTGATCTCTTTCCTTTGCGGTCGGTGGCCAATTTTCGAAGGCACTTTCATTCAACGCATTCACTGTTTCCTCACTTTCGGCGCTTACGATTACTTCCTGCGTTTTATTGGCGCTGTTTTTGGCTCTAAGTGTACCAATGCTGTTCTTTCTGTTGAATATTATTGCTGCGATCGTCCCAATCCTCTCTTACAGATCATATATCTTGTGATAATCAGCTTTACATATTATTTTGCCGTCAACTCTTCCTTTGCCTATATCCCTGGATACTATTTAAGTGCAACTCACAAGTACACAAGCTTCTTCGCAGCTGCTGTTGGAATTCTGCTCTTTCTTTTGACCAGCTTTACTGATCCTGGGACAATAAAGGCTGAGAATGTTTCTCAATATCTTGCTGCTTATCCTTATGATAATATCATTTTTTCAGAGAAAGAATGTTCCACTTGCAAAATTCCAAAACCTGCTAGATCAAAGCATTGCAGCATTTGTGATCGCTGTGTTGCACGATTTGACCATCACTGTGGATGGATGAATAATTGCATAGGGGAGAGAAACACTCGATATTTCATGGCTTTTCTTTTATGGCATTTCCTTCTATGTATGTATGGAACAGTTCTCATAGGATTAATTCTCGCAGGAAGACTAAAAGAATTAAAAGTTGTCTATATTCTAACAGTTTATTATGGAATTGAAAATTCATTTTGGGATTTAGCTCCCCATGTTGTACAGTGGTTATTGGGATCCTACAACACTCAGATTCTTCTTATAGTTTTCGTTGCGATTGTTGGGATGCTGTTAGGCGGATTCTTCGGTTACCATGCAAAGCTTTGCCTTAGTAACACTACCACTAATGAGACCTTCAAGTGGCAAGACTACATGGACTGGCAGAGAAAGTTAAAAGAAGCGCAGGCCAGTGCTGCAGCGCTAAAACAAAGTATCAGTGGAATGAACAGTGAAAAACAATCGTTGTCAAGCAACAAATGGAAAGCATTTTTTCGAAGATCACCTTTGGAGGATGTGATAGTTGTTAAGAATAATGTTTACAATAAAGGTTTCTTGCACAATATTTGGGAGGTTATTTCGCCTCTCTCTACAAGGCAGTCCTTTACAAAAACAAAGTTGAAATCCAACTGA

Protein sequence

>Msa1128860

MGVGLLLVCHGLVTALVVISFLCGRWPIFEGTFIQRIHCFLTFGAYDYFLRFIGAVFGSKCTNAVLSVEYYCCDRPNPLLQIIYLVIISFTYYFAVNSSFAYIPGYYLSATHKYTSFFAAAVGILLFLLTSFTDPGTIKAENVSQYLAAYPYDNIIFSEKECSTCKIPKPARSKHCSICDRCVARFDHHCGWMNNCIGERNTRYFMAFLLWHFLLCMYGTVLIGLILAGRLKELKVVYILTVYYGIENSFWDLAPHVVQWLLGSYNTQILLIVFVAIVGMLLGGFFGYHAKLCLSNTTTNETFKWQDYMDWQRKLKEAQASAAALKQSISGMNSEKQSLSSNKWKAFFRRSPLEDVIVVKNNVYNKGFLHNIWEVISPLSTRQSFTKTKLKSN*