AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0609000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609000 MtrunA17_Chr4g0041421 100.000 91 0 0 1 91 1 91 1.18e-63 187
Msa0609000 MtrunA17_Chr4g0072361 45.455 66 36 0 15 80 8 73 1.33e-17 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609000 AT3G59810.3 87.912 91 11 0 1 91 1 91 4.38e-55 166
Msa0609000 AT3G59810.1 87.912 91 11 0 1 91 1 91 4.38e-55 166
Msa0609000 AT3G59810.2 87.912 91 11 0 1 91 1 91 4.38e-55 166
Msa0609000 AT2G43810.2 85.714 91 13 0 1 91 1 91 1.81e-54 164
Msa0609000 AT2G43810.3 85.714 91 13 0 1 91 1 91 1.81e-54 164
Msa0609000 AT2G43810.1 85.714 91 13 0 1 91 1 91 1.81e-54 164
Msa0609000 AT4G30220.1 48.485 66 34 0 15 80 8 73 1.39e-18 73.6
Msa0609000 AT4G30220.2 48.485 66 34 0 15 80 16 81 1.97e-18 73.2
Msa0609000 AT2G14285.1 50.000 46 23 0 35 80 1 46 3.90e-11 53.9

Find 45 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCAAACCAACATATATT+TGG 0.145854 4_2:+56391431 None:intergenic
AAATACTTGTTGGCATATTT+TGG 0.173229 4_2:-56391271 Msa0609000:three_prime_UTR
TCATGGTAATTGAGTTTCTA+TGG 0.245285 4_2:-56391333 Msa0609000:three_prime_UTR
AGGGTTAAAGAGTGTAATTT+TGG 0.268709 4_2:-56394401 None:intergenic
GGTATCCTAGCTTGTCTAGA+TGG 0.292896 4_2:-56391694 Msa0609000:CDS
GAGGAAATCAGCTGGAGTTT+TGG 0.321197 4_2:+56394083 None:intergenic
CCACTTTGTAAAATACTTGT+TGG 0.347405 4_2:-56391281 Msa0609000:three_prime_UTR
CAAACAGAGGAGTATGTTAA+TGG 0.355057 4_2:-56391649 Msa0609000:CDS
AAGGTACCTTTGCAGCGATA+TGG 0.363913 4_2:+56394270 None:intergenic
TTTGAGTATGAGTGAGGGTT+TGG 0.369343 4_2:+56394339 None:intergenic
TTCTGCTAGAGTCCTCTTTG+AGG 0.400676 4_2:+56391473 None:intergenic
GCATTCATTCGAGGGAATAA+TGG 0.408713 4_2:-56391601 Msa0609000:intron
GGAACAGAGAAAAGTGGTTC+AGG 0.419839 4_2:-56394111 Msa0609000:CDS
GGACAGCTGAAGAACAAGTA+TGG 0.438644 4_2:-56391628 Msa0609000:CDS
AGGTACCTTTGCAGCGATAT+GGG 0.461847 4_2:+56394271 None:intergenic
TCTATGGTTATACTATATCA+AGG 0.496579 4_2:-56391317 Msa0609000:three_prime_UTR
GTCTACCACGAATGGATTTG+AGG 0.510106 4_2:+56394064 None:intergenic
AGAGGAATCCAAATATATGT+TGG 0.528071 4_2:-56391439 Msa0609000:three_prime_UTR
GATTTCCTCAAATCCATTCG+TGG 0.535672 4_2:-56394069 Msa0609000:CDS
AATCGAAAACGAGGCGCGAT+AGG 0.543071 4_2:+56394300 None:intergenic
GTATCCTAGCTTGTCTAGAT+GGG 0.549331 4_2:-56391693 Msa0609000:CDS
AACCACAGGTCTACCACGAA+TGG 0.553624 4_2:+56394056 None:intergenic
ATGGATTTGAGGAAATCAGC+TGG 0.557310 4_2:+56394075 None:intergenic
TATGGTGATGCATTCATTCG+AGG 0.561710 4_2:-56391610 Msa0609000:CDS
CAAAGAGGACTCTAGCAGAA+GGG 0.565739 4_2:-56391470 Msa0609000:CDS
TTTAGATTGTAAAAGATGAG+TGG 0.566691 4_2:-56394132 Msa0609000:exon
CGCGACCCATATCGCTGCAA+AGG 0.580989 4_2:-56394276 Msa0609000:intron
TGTACATCAGTACCTCAAAG+AGG 0.584586 4_2:-56391485 Msa0609000:CDS
GAGTTGAGCTTAACAACCAC+AGG 0.590065 4_2:+56394042 None:intergenic
TATACCCATCTAGACAAGCT+AGG 0.590930 4_2:+56391689 None:intergenic
ATGAGTGGAACAGAGAAAAG+TGG 0.591203 4_2:-56394117 Msa0609000:CDS
GTGGTTGTTAAGCTCAACTC+TGG 0.591462 4_2:-56394039 Msa0609000:CDS
TGGGTATATGAATATTGCAA+TGG 0.592472 4_2:-56391674 Msa0609000:CDS
AGCAGAAGGGGCTTAAACAG+AGG 0.597578 4_2:-56391457 Msa0609000:exon
AAAGAGGACTCTAGCAGAAG+GGG 0.600102 4_2:-56391469 Msa0609000:CDS
TCAAAGAGGACTCTAGCAGA+AGG 0.600306 4_2:-56391471 Msa0609000:CDS
ACGAGGCGCGATAGGAGAGA+AGG 0.602822 4_2:+56394308 None:intergenic
ATGGTGATGCATTCATTCGA+GGG 0.615726 4_2:-56391609 Msa0609000:CDS
AAAATAACAAATCATTTACT+CGG 0.630547 4_2:-56394371 Msa0609000:five_prime_UTR
TATTGCAATGGAACAAACAG+AGG 0.640288 4_2:-56391662 Msa0609000:CDS
ATCCATTCGTGGTAGACCTG+TGG 0.642884 4_2:-56394058 Msa0609000:CDS
AACTCTGGTGTTGACTATCG+AGG 0.657618 4_2:-56394024 Msa0609000:intron
GTATGAGTGAGGGTTTGGAT+CGG 0.671968 4_2:+56394344 None:intergenic
GGGTCGCGAAATCGAAAACG+AGG 0.687157 4_2:+56394291 None:intergenic
CAATTACCATGACAAACATG+AGG 0.688290 4_2:+56391344 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTTATTTATTTATTT+CGG - chr4_2:56393329-56393348 Msa0609000:intron 0.0%
!! AAAATAACAAATCATTTACT+CGG - chr4_2:56391214-56391233 Msa0609000:three_prime_UTR 15.0%
!! AATTAACATAACAAAAATCA+CGG + chr4_2:56391415-56391434 None:intergenic 15.0%
!!! TTTGTTATGTTAATTTTTGA+AGG - chr4_2:56391420-56391439 Msa0609000:intron 15.0%
!!! TTAATTTTTGAAGGTTTTTT+AGG - chr4_2:56391429-56391448 Msa0609000:intron 15.0%
!!! TAATTTTTGAAGGTTTTTTA+GGG - chr4_2:56391430-56391449 Msa0609000:intron 15.0%
!!! TGTGATTTTTTTTTTAAACT+TGG - chr4_2:56391808-56391827 Msa0609000:intron 15.0%
!!! TTTTTTTTTTAAACTTGGTA+TGG - chr4_2:56391813-56391832 Msa0609000:intron 15.0%
!!! CTCATTTTTTTTTTTAATTC+TGG - chr4_2:56392292-56392311 Msa0609000:intron 15.0%
!! TATTCATTTAGTTATTCAAT+AGG - chr4_2:56392507-56392526 Msa0609000:intron 15.0%
!! CATAATATAACAAATATAGA+TGG + chr4_2:56393043-56393062 None:intergenic 15.0%
!! GATATCTGAATAAGAAAATA+CGG + chr4_2:56391722-56391741 None:intergenic 20.0%
!! TCTTAGTTTACATTATTTGA+AGG - chr4_2:56391740-56391759 Msa0609000:intron 20.0%
!! TAACTTTAAATTAGACAGAA+AGG + chr4_2:56393293-56393312 None:intergenic 20.0%
!! GTAACTAATCTTATAGTTAT+TGG - chr4_2:56393539-56393558 Msa0609000:intron 20.0%
!! AATTCAAACCAACATATATT+TGG + chr4_2:56394157-56394176 None:intergenic 20.0%
!!! TTGTAACTTTTTGTATTATG+TGG - chr4_2:56394188-56394207 Msa0609000:intron 20.0%
!! GTAAAAAAGTTTCAGAAAAT+AGG + chr4_2:56394222-56394241 None:intergenic 20.0%
! TTTAGATTGTAAAAGATGAG+TGG - chr4_2:56391453-56391472 Msa0609000:exon 25.0%
!! TTCATCAATTTTCCATTCTA+TGG - chr4_2:56391602-56391621 Msa0609000:CDS 25.0%
!!! TGGATTTTGAATTCAAGTTT+AGG - chr4_2:56391647-56391666 Msa0609000:CDS 25.0%
! TAGTTTACATTATTTGAAGG+CGG - chr4_2:56391743-56391762 Msa0609000:intron 25.0%
! TTCACAATAAAAAACCACAA+GGG + chr4_2:56392004-56392023 None:intergenic 25.0%
! ATTCACAATAAAAAACCACA+AGG + chr4_2:56392005-56392024 None:intergenic 25.0%
! TTTGGTTAAATGAAAAGAGA+TGG - chr4_2:56392127-56392146 Msa0609000:intron 25.0%
!! AAAGAATAGAGGTTCTAATT+TGG - chr4_2:56392189-56392208 Msa0609000:intron 25.0%
! TTTACTTTCTCTGTCTAATT+TGG - chr4_2:56392251-56392270 Msa0609000:intron 25.0%
!! ATTTGGAGTTATTATGAGAT+TGG - chr4_2:56392206-56392225 Msa0609000:intron 25.0%
! TAAGAGACAAATAGTAAGAA+AGG - chr4_2:56392426-56392445 Msa0609000:intron 25.0%
! ATAGGAGTAGAAATTGAAAT+AGG - chr4_2:56392525-56392544 Msa0609000:intron 25.0%
! TAGTAAAAATTGAGTACACT+AGG - chr4_2:56392778-56392797 Msa0609000:intron 25.0%
! GAAAAAGTTTAGTTGGATTT+GGG - chr4_2:56392912-56392931 Msa0609000:intron 25.0%
! AAACAATTTGTCCATTCAAT+TGG - chr4_2:56393074-56393093 Msa0609000:intron 25.0%
!! AGATTAGTTACATAAGATAC+AGG + chr4_2:56393530-56393549 None:intergenic 25.0%
!!! ATAATGCATTGATTGTTTCT+TGG - chr4_2:56393730-56393749 Msa0609000:intron 25.0%
! AGTTTGGTTATATCACTTAT+TGG - chr4_2:56393775-56393794 Msa0609000:intron 25.0%
! GTTACATTATACTTCTATCT+AGG - chr4_2:56393829-56393848 Msa0609000:intron 25.0%
!! AAATTAGGCTCAATTGTTTT+TGG - chr4_2:56393857-56393876 Msa0609000:intron 25.0%
! TCTATGGTTATACTATATCA+AGG - chr4_2:56394268-56394287 Msa0609000:intron 25.0%
!!! AAATACTTGTTGGCATATTT+TGG - chr4_2:56394314-56394333 Msa0609000:five_prime_UTR 25.0%
!!! AAGTTTTTGAGTATGAGTGA+GGG + chr4_2:56391254-56391273 None:intergenic 30.0%
!!! TAAGTTTTTGAGTATGAGTG+AGG + chr4_2:56391255-56391274 None:intergenic 30.0%
ATAACAAAAATCACGGTGTA+AGG + chr4_2:56391408-56391427 None:intergenic 30.0%
! ATTTTCCATTCTATGGCTTT+AGG - chr4_2:56391609-56391628 Msa0609000:CDS 30.0%
AGTTTACATTATTTGAAGGC+GGG - chr4_2:56391744-56391763 Msa0609000:intron 30.0%
TAATTTGGCATAGTAGGATT+CGG - chr4_2:56391921-56391940 Msa0609000:intron 30.0%
TCACAATAAAAAACCACAAG+GGG + chr4_2:56392003-56392022 None:intergenic 30.0%
!! TTTTGTTTGTCCAAAGCAAA+AGG + chr4_2:56392075-56392094 None:intergenic 30.0%
TCAGAAAAGGCTATAATGTT+TGG - chr4_2:56392109-56392128 Msa0609000:intron 30.0%
AAATGAAAAGAGATGGAATG+TGG - chr4_2:56392134-56392153 Msa0609000:intron 30.0%
! TAGAACCTCTATTCTTTTCA+TGG + chr4_2:56392186-56392205 None:intergenic 30.0%
ATAGGAGGAAAGAAAAAGTT+AGG - chr4_2:56392543-56392562 Msa0609000:intron 30.0%
AAGAAAAAGTTAGGTTTGAC+TGG - chr4_2:56392552-56392571 Msa0609000:intron 30.0%
AGAAAAAGTTAGGTTTGACT+GGG - chr4_2:56392553-56392572 Msa0609000:intron 30.0%
TAAAAATTGAGTACACTAGG+AGG - chr4_2:56392781-56392800 Msa0609000:intron 30.0%
GTAACTGATCGTTTAGTTAT+TGG - chr4_2:56392837-56392856 Msa0609000:intron 30.0%
! TATTGGTTAAGAGTAAAAGC+TGG - chr4_2:56392854-56392873 Msa0609000:intron 30.0%
TTAAGAGTAAAAGCTGGAAT+AGG - chr4_2:56392860-56392879 Msa0609000:intron 30.0%
CGAAAAAGTTTAGTTGGATT+TGG - chr4_2:56392911-56392930 Msa0609000:intron 30.0%
GTACATCAATACCAATTGAA+TGG + chr4_2:56393088-56393107 None:intergenic 30.0%
TTAGTGAACACAAGTTTCAT+TGG + chr4_2:56393133-56393152 None:intergenic 30.0%
! GGCTATAATGTTTGGTTTAA+TGG - chr4_2:56393161-56393180 Msa0609000:intron 30.0%
! TTTGGTTTAATGGAAAGAGA+TGG - chr4_2:56393171-56393190 Msa0609000:intron 30.0%
TAATGGAAAGAGATGGAATA+TGG - chr4_2:56393178-56393197 Msa0609000:intron 30.0%
AATGGAAAGAGATGGAATAT+GGG - chr4_2:56393179-56393198 Msa0609000:intron 30.0%
!! TCTCTTCAACTATTTCTACA+CGG + chr4_2:56393357-56393376 None:intergenic 30.0%
! TCTTTTCAATTGCTCAACAT+GGG + chr4_2:56393405-56393424 None:intergenic 30.0%
! TTCTTTTCAATTGCTCAACA+TGG + chr4_2:56393406-56393425 None:intergenic 30.0%
ACAAGAGACAAATAGTAAGA+AGG - chr4_2:56393458-56393477 Msa0609000:intron 30.0%
AGAGTAGAAGTTGAAATACA+AGG - chr4_2:56393565-56393584 Msa0609000:intron 30.0%
GAGTAGAAGTTGAAATACAA+GGG - chr4_2:56393566-56393585 Msa0609000:intron 30.0%
AAGTTGAAATACAAGGGAAA+GGG - chr4_2:56393572-56393591 Msa0609000:intron 30.0%
ATTAACCTCTGTTACTAGTT+TGG - chr4_2:56393759-56393778 Msa0609000:intron 30.0%
TATAACCAAACTAGTAACAG+AGG + chr4_2:56393767-56393786 None:intergenic 30.0%
TCTATCTAGGTACACAAATT+AGG - chr4_2:56393842-56393861 Msa0609000:intron 30.0%
!!! TTGTTTTTGGTTAATCTTGC+AGG - chr4_2:56393870-56393889 Msa0609000:intron 30.0%
TGGGTATATGAATATTGCAA+TGG - chr4_2:56393911-56393930 Msa0609000:intron 30.0%
AGAGGAATCCAAATATATGT+TGG - chr4_2:56394146-56394165 Msa0609000:five_prime_UTR 30.0%
! ACTTTTTGTATTATGTGGAC+CGG - chr4_2:56394193-56394212 Msa0609000:intron 30.0%
AGTTTCAGAAAATAGGTAAC+CGG + chr4_2:56394215-56394234 None:intergenic 30.0%
! TTTTTACCTCATGTTTGTCA+TGG - chr4_2:56394235-56394254 Msa0609000:intron 30.0%
TCATGGTAATTGAGTTTCTA+TGG - chr4_2:56394252-56394271 Msa0609000:intron 30.0%
! ACAAGTATTTTACAAAGTGG+CGG + chr4_2:56394304-56394323 None:intergenic 30.0%
! CCAACAAGTATTTTACAAAG+TGG + chr4_2:56394307-56394326 None:intergenic 30.0%
CCACTTTGTAAAATACTTGT+TGG - chr4_2:56394304-56394323 Msa0609000:five_prime_UTR 30.0%
!!! CAGAATGTTTTAGCTTAGTT+TGG - chr4_2:56394337-56394356 Msa0609000:five_prime_UTR 30.0%
!! TTAGGTCACTTTGGAATTTG+TGG - chr4_2:56391627-56391646 Msa0609000:CDS 35.0%
! AAGTTTAGGTTCACATTCCT+AGG - chr4_2:56391661-56391680 Msa0609000:CDS 35.0%
ATTCCTAGGTCACAGTAATT+TGG - chr4_2:56391675-56391694 Msa0609000:CDS 35.0%
TTTAAACTTGGTATGGTCCA+AGG - chr4_2:56391820-56391839 Msa0609000:intron 35.0%
CCTACTATGCCAAATTATGT+GGG + chr4_2:56391918-56391937 None:intergenic 35.0%
TCCTACTATGCCAAATTATG+TGG + chr4_2:56391919-56391938 None:intergenic 35.0%
! TTCGGACAAGAGAATTTTAG+AGG - chr4_2:56391939-56391958 Msa0609000:intron 35.0%
! TGCTTTGGACAAACAAAACT+TGG - chr4_2:56392077-56392096 Msa0609000:intron 35.0%
! GCTTTGGACAAACAAAACTT+GGG - chr4_2:56392078-56392097 Msa0609000:intron 35.0%
TTGGGTTCACTAATCAGAAA+AGG - chr4_2:56392096-56392115 Msa0609000:intron 35.0%
TAGAGCCATGAAAAGAATAG+AGG - chr4_2:56392178-56392197 Msa0609000:intron 35.0%
! CTTTTCAACTGCTAAAAGCA+GGG + chr4_2:56392368-56392387 None:intergenic 35.0%
! TCTTTTCAACTGCTAAAAGC+AGG + chr4_2:56392369-56392388 None:intergenic 35.0%
! TAGTAAGAAAGGAGTACACT+AGG - chr4_2:56392437-56392456 Msa0609000:intron 35.0%
TACACTAGGAGAAATAAGCA+TGG - chr4_2:56392451-56392470 Msa0609000:intron 35.0%
GGAGTAGAAATTGAAATAGG+AGG - chr4_2:56392528-56392547 Msa0609000:intron 35.0%
GAAAAAGTTAGGTTTGACTG+GGG - chr4_2:56392554-56392573 Msa0609000:intron 35.0%
TACCATTTCATCTTCAACCA+TGG - chr4_2:56392617-56392636 Msa0609000:intron 35.0%
ACCATTTCATCTTCAACCAT+GGG - chr4_2:56392618-56392637 Msa0609000:intron 35.0%
ACCAGAGTAGTATCACATAT+TGG - chr4_2:56392650-56392669 Msa0609000:intron 35.0%
ACCAATATGTGATACTACTC+TGG + chr4_2:56392654-56392673 None:intergenic 35.0%
GTAGTATCACATATTGGTGT+AGG - chr4_2:56392656-56392675 Msa0609000:intron 35.0%
GAGGAACGAAAAAGTTTAGT+TGG - chr4_2:56392905-56392924 Msa0609000:intron 35.0%
ATCACTTCATCTTCTACCAT+TGG - chr4_2:56392976-56392995 Msa0609000:intron 35.0%
!! ACAAGTTGCACTTTTTGCTT+TGG - chr4_2:56393106-56393125 Msa0609000:intron 35.0%
!! CAAGTTGCACTTTTTGCTTT+GGG - chr4_2:56393107-56393126 Msa0609000:intron 35.0%
! CTTTTCAATTGCTCAACATG+GGG + chr4_2:56393404-56393423 None:intergenic 35.0%
GAAGTTGAAATACAAGGGAA+AGG - chr4_2:56393571-56393590 Msa0609000:intron 35.0%
AGTAGAGCTTGAAAGAAACT+TGG - chr4_2:56393600-56393619 Msa0609000:intron 35.0%
GTAGAGCTTGAAAGAAACTT+GGG - chr4_2:56393601-56393620 Msa0609000:intron 35.0%
!! AAAGAAACTTGGGTTGGATT+GGG - chr4_2:56393611-56393630 Msa0609000:intron 35.0%
ATCACTTCATCTAACACCAT+TGG - chr4_2:56393678-56393697 Msa0609000:intron 35.0%
GGTTATATCACTTATTGGTG+TGG - chr4_2:56393780-56393799 Msa0609000:intron 35.0%
TATCACTTATTGGTGTGGAT+TGG - chr4_2:56393785-56393804 Msa0609000:intron 35.0%
TATTGCAATGGAACAAACAG+AGG - chr4_2:56393923-56393942 Msa0609000:intron 35.0%
! CAAACAGAGGAGTATGTTAA+TGG - chr4_2:56393936-56393955 Msa0609000:intron 35.0%
CAATTACCATGACAAACATG+AGG + chr4_2:56394244-56394263 None:intergenic 35.0%
TTTGAGTATGAGTGAGGGTT+TGG + chr4_2:56391249-56391268 None:intergenic 40.0%
ATGAGTGGAACAGAGAAAAG+TGG - chr4_2:56391468-56391487 Msa0609000:CDS 40.0%
ATGGATTTGAGGAAATCAGC+TGG + chr4_2:56391513-56391532 None:intergenic 40.0%
GATTTCCTCAAATCCATTCG+TGG - chr4_2:56391516-56391535 Msa0609000:intron 40.0%
AGTGACCTAAAGCCATAGAA+TGG + chr4_2:56391617-56391636 None:intergenic 40.0%
!! TCTATGGCTTTAGGTCACTT+TGG - chr4_2:56391618-56391637 Msa0609000:CDS 40.0%
CAACCAAATTACTGTGACCT+AGG + chr4_2:56391681-56391700 None:intergenic 40.0%
!! ATGGACTAGCCCACATAATT+TGG - chr4_2:56391906-56391925 Msa0609000:intron 40.0%
CCCACATAATTTGGCATAGT+AGG - chr4_2:56391915-56391934 Msa0609000:intron 40.0%
!! TTTTAGAGGAGCACACTCTA+AGG - chr4_2:56391953-56391972 Msa0609000:intron 40.0%
GCACATCGACACTAATTGAA+TGG + chr4_2:56392043-56392062 None:intergenic 40.0%
!! TCAATTAGTGTCGATGTGCA+TGG - chr4_2:56392044-56392063 Msa0609000:intron 40.0%
! CATGGTTACACCTTTTGCTT+TGG - chr4_2:56392062-56392081 Msa0609000:intron 40.0%
TGAAAAGAGATGGAATGTGG+TGG - chr4_2:56392137-56392156 Msa0609000:intron 40.0%
GAGAAATAAGCATGGAACAG+AGG - chr4_2:56392459-56392478 Msa0609000:intron 40.0%
TCCCATGGTTGAAGATGAAA+TGG + chr4_2:56392622-56392641 None:intergenic 40.0%
ATGTGATACTACTCTGGTCA+AGG + chr4_2:56392648-56392667 None:intergenic 40.0%
CTGCAATCACAGAATAGCTA+CGG - chr4_2:56392696-56392715 Msa0609000:intron 40.0%
ATCACAGAATAGCTACGGAA+AGG - chr4_2:56392701-56392720 Msa0609000:intron 40.0%
AGCTAAAAATGTTGCACCAG+AGG + chr4_2:56392728-56392747 None:intergenic 40.0%
ATTGAGTACACTAGGAGGAA+TGG - chr4_2:56392786-56392805 Msa0609000:intron 40.0%
GAGTAAAAGCTGGAATAGGA+AGG - chr4_2:56392864-56392883 Msa0609000:intron 40.0%
AAGCTGGAATAGGAAGGAAA+TGG - chr4_2:56392870-56392889 Msa0609000:intron 40.0%
AGCTGGAATAGGAAGGAAAT+GGG - chr4_2:56392871-56392890 Msa0609000:intron 40.0%
TTGGATTTGGGAGATCATCA+GGG - chr4_2:56392924-56392943 Msa0609000:intron 40.0%
GTGATATTAGTGATCCTCCA+TGG + chr4_2:56392961-56392980 None:intergenic 40.0%
TTGTGTTCACTAACCAGCAA+TGG - chr4_2:56393140-56393159 Msa0609000:intron 40.0%
CCAAACATTATAGCCATTGC+TGG + chr4_2:56393156-56393175 None:intergenic 40.0%
CCAGCAATGGCTATAATGTT+TGG - chr4_2:56393153-56393172 Msa0609000:intron 40.0%
TAAGAAGGTAGTAGTACGCT+AGG - chr4_2:56393473-56393492 Msa0609000:intron 40.0%
AGCTTGAAAGAAACTTGGGT+TGG - chr4_2:56393605-56393624 Msa0609000:intron 40.0%
!! GAAAGAAACTTGGGTTGGAT+TGG - chr4_2:56393610-56393629 Msa0609000:intron 40.0%
!! AAGAAACTTGGGTTGGATTG+GGG - chr4_2:56393612-56393631 Msa0609000:intron 40.0%
TTATTCCAGAGCTACCACTT+TGG + chr4_2:56393714-56393733 None:intergenic 40.0%
! GTATCCTAGCTTGTCTAGAT+GGG - chr4_2:56393892-56393911 Msa0609000:intron 40.0%
TATACCCATCTAGACAAGCT+AGG + chr4_2:56393899-56393918 None:intergenic 40.0%
! TATGGTGATGCATTCATTCG+AGG - chr4_2:56393975-56393994 Msa0609000:intron 40.0%
! ATGGTGATGCATTCATTCGA+GGG - chr4_2:56393976-56393995 Msa0609000:intron 40.0%
GCATTCATTCGAGGGAATAA+TGG - chr4_2:56393984-56394003 Msa0609000:intron 40.0%
TGTACATCAGTACCTCAAAG+AGG - chr4_2:56394100-56394119 Msa0609000:CDS 40.0%
GTATGAGTGAGGGTTTGGAT+CGG + chr4_2:56391244-56391263 None:intergenic 45.0%
AGGTACCTTTGCAGCGATAT+GGG + chr4_2:56391317-56391336 None:intergenic 45.0%
! AAGGTACCTTTGCAGCGATA+TGG + chr4_2:56391318-56391337 None:intergenic 45.0%
GGAACAGAGAAAAGTGGTTC+AGG - chr4_2:56391474-56391493 Msa0609000:CDS 45.0%
! GAGGAAATCAGCTGGAGTTT+TGG + chr4_2:56391505-56391524 None:intergenic 45.0%
! GTCTACCACGAATGGATTTG+AGG + chr4_2:56391524-56391543 None:intergenic 45.0%
GAGTTGAGCTTAACAACCAC+AGG + chr4_2:56391546-56391565 None:intergenic 45.0%
GTGGTTGTTAAGCTCAACTC+TGG - chr4_2:56391546-56391565 Msa0609000:intron 45.0%
!! AACTCTGGTGTTGACTATCG+AGG - chr4_2:56391561-56391580 Msa0609000:intron 45.0%
!! CATTATTTGAAGGCGGGTTG+TGG - chr4_2:56391750-56391769 Msa0609000:intron 45.0%
! CTTTAATTTCCCCTGGACAG+TGG + chr4_2:56391869-56391888 None:intergenic 45.0%
!! GCTTTGGCTTTAATTTCCCC+TGG + chr4_2:56391876-56391895 None:intergenic 45.0%
AGCCAAAGCTAAGCTCTGTA+TGG - chr4_2:56391887-56391906 Msa0609000:intron 45.0%
GTCCATACAGAGCTTAGCTT+TGG + chr4_2:56391892-56391911 None:intergenic 45.0%
ATGGTATGAGTCATCGTCCA+AGG + chr4_2:56392603-56392622 None:intergenic 45.0%
GCTATTCTGTGATTGCAGCA+TGG + chr4_2:56392694-56392713 None:intergenic 45.0%
GCTGGAATAGGAAGGAAATG+GGG - chr4_2:56392872-56392891 Msa0609000:intron 45.0%
AGGAAGGAAATGGGGTATAG+TGG - chr4_2:56392880-56392899 Msa0609000:intron 45.0%
AAGGAAATGGGGTATAGTGG+AGG - chr4_2:56392883-56392902 Msa0609000:intron 45.0%
GTTGGATTTGGGAGATCATC+AGG - chr4_2:56392923-56392942 Msa0609000:intron 45.0%
CTCTGGTCAAGGAAATCCAA+TGG + chr4_2:56392995-56393014 None:intergenic 45.0%
TTGGATTTCCTTGACCAGAG+TGG - chr4_2:56392995-56393014 Msa0609000:intron 45.0%
!! TTGGATTGGGGAGAGTATCA+GGG - chr4_2:56393624-56393643 Msa0609000:intron 45.0%
CTTTGGTCAAGGAGATCCAA+TGG + chr4_2:56393697-56393716 None:intergenic 45.0%
TTGGATCTCCTTGACCAAAG+TGG - chr4_2:56393697-56393716 Msa0609000:intron 45.0%
! GGTATCCTAGCTTGTCTAGA+TGG - chr4_2:56393891-56393910 Msa0609000:intron 45.0%
GGACAGCTGAAGAACAAGTA+TGG - chr4_2:56393957-56393976 Msa0609000:intron 45.0%
TTCTGCTAGAGTCCTCTTTG+AGG + chr4_2:56394115-56394134 None:intergenic 45.0%
TCAAAGAGGACTCTAGCAGA+AGG - chr4_2:56394114-56394133 Msa0609000:CDS 45.0%
CAAAGAGGACTCTAGCAGAA+GGG - chr4_2:56394115-56394134 Msa0609000:CDS 45.0%
AAAGAGGACTCTAGCAGAAG+GGG - chr4_2:56394116-56394135 Msa0609000:CDS 45.0%
AATCGAAAACGAGGCGCGAT+AGG + chr4_2:56391288-56391307 None:intergenic 50.0%
AGCGAGAAGAGAAGACGAGA+AGG + chr4_2:56391337-56391356 None:intergenic 50.0%
ATCCATTCGTGGTAGACCTG+TGG - chr4_2:56391527-56391546 Msa0609000:intron 50.0%
AACCACAGGTCTACCACGAA+TGG + chr4_2:56391532-56391551 None:intergenic 50.0%
GAATTGGTCCCCGGATAAGT+CGG + chr4_2:56391847-56391866 None:intergenic 50.0%
TTTCCCCTGGACAGTGGAAT+TGG + chr4_2:56391863-56391882 None:intergenic 50.0%
GGTTCCTAGCCTACACAATC+AGG - chr4_2:56391974-56391993 Msa0609000:intron 50.0%
GTTGCCTGATTGTGTAGGCT+AGG + chr4_2:56391981-56392000 None:intergenic 50.0%
AAGGGGTTGCCTGATTGTGT+AGG + chr4_2:56391986-56392005 None:intergenic 50.0%
AGTTAGGTTTGACTGGGGAG+AGG - chr4_2:56392559-56392578 Msa0609000:intron 50.0%
TTTGACTGGGGAGAGGATCA+GGG - chr4_2:56392566-56392585 Msa0609000:intron 50.0%
TCAGGGTCTCTCAAACACCT+TGG - chr4_2:56392583-56392602 Msa0609000:intron 50.0%
ATAGCTACGGAAAGGACCTC+TGG - chr4_2:56392709-56392728 Msa0609000:intron 50.0%
CACTAGGAGGAATGGCACAT+AGG - chr4_2:56392794-56392813 Msa0609000:intron 50.0%
! GAAATGGGGTATAGTGGAGG+AGG - chr4_2:56392886-56392905 Msa0609000:intron 50.0%
TCAGGGTCTCTTGAACACCA+TGG - chr4_2:56392941-56392960 Msa0609000:intron 50.0%
TAGAGCTACCACTCTGGTCA+AGG + chr4_2:56393006-56393025 None:intergenic 50.0%
!! ACCAGAGTGGTAGCTCTAGA+AGG - chr4_2:56393008-56393027 Msa0609000:intron 50.0%
!! ACCTTCTAGAGCTACCACTC+TGG + chr4_2:56393012-56393031 None:intergenic 50.0%
!! GTTGGATTGGGGAGAGTATC+AGG - chr4_2:56393623-56393642 Msa0609000:intron 50.0%
TCCCTCTAACACCTTGGAGA+GGG - chr4_2:56393647-56393666 Msa0609000:intron 50.0%
! ACCCTCTCCAAGGTGTTAGA+GGG + chr4_2:56393651-56393670 None:intergenic 50.0%
GATAAGAGTCACCCTCTCCA+AGG + chr4_2:56393661-56393680 None:intergenic 50.0%
CAGAGCTACCACTTTGGTCA+AGG + chr4_2:56393708-56393727 None:intergenic 50.0%
CTTGACCAAAGTGGTAGCTC+TGG - chr4_2:56393706-56393725 Msa0609000:intron 50.0%
AGCAGAAGGGGCTTAAACAG+AGG - chr4_2:56394128-56394147 Msa0609000:exon 50.0%
GGGTCGCGAAATCGAAAACG+AGG + chr4_2:56391297-56391316 None:intergenic 55.0%
! GGTCCAAGGACCGACTTATC+CGG - chr4_2:56391834-56391853 Msa0609000:intron 55.0%
! GTCCAAGGACCGACTTATCC+GGG - chr4_2:56391835-56391854 Msa0609000:intron 55.0%
! TCCAAGGACCGACTTATCCG+GGG - chr4_2:56391836-56391855 Msa0609000:intron 55.0%
TGGACAGTGGAATTGGTCCC+CGG + chr4_2:56391856-56391875 None:intergenic 55.0%
GGGACCAATTCCACTGTCCA+GGG - chr4_2:56391856-56391875 Msa0609000:intron 55.0%
GGACCAATTCCACTGTCCAG+GGG - chr4_2:56391857-56391876 Msa0609000:intron 55.0%
CACAATCAGGCAACCCCTTG+TGG - chr4_2:56391987-56392006 Msa0609000:intron 55.0%
GTTTGACTGGGGAGAGGATC+AGG - chr4_2:56392565-56392584 Msa0609000:intron 55.0%
CTCTGGTCAAGGAGATCCCA+TGG + chr4_2:56392637-56392656 None:intergenic 55.0%
GGGTCTCTTGAACACCATGG+AGG - chr4_2:56392944-56392963 Msa0609000:intron 55.0%
TCAGGGTCCCTCTAACACCT+TGG - chr4_2:56393641-56393660 Msa0609000:intron 55.0%
GTCCCTCTAACACCTTGGAG+AGG - chr4_2:56393646-56393665 Msa0609000:intron 55.0%
! CACCCTCTCCAAGGTGTTAG+AGG + chr4_2:56393652-56393671 None:intergenic 55.0%
ACGAGGCGCGATAGGAGAGA+AGG + chr4_2:56391280-56391299 None:intergenic 60.0%
CGCGACCCATATCGCTGCAA+AGG - chr4_2:56391309-56391328 Msa0609000:three_prime_UTR 60.0%
TCCCCGGATAAGTCGGTCCT+TGG + chr4_2:56391840-56391859 None:intergenic 60.0%
GGGGACCAATTCCACTGTCC+AGG - chr4_2:56391855-56391874 Msa0609000:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 56391194 56394413 56391194 ID=Msa0609000;Name=Msa0609000
chr4_2 mRNA 56391194 56394413 56391194 ID=Msa0609000-mRNA-1;Parent=Msa0609000;Name=Msa0609000-mRNA-1;_AED=0.08;_eAED=0.08;_QI=163|1|1|1|0.5|0.2|5|229|91
chr4_2 exon 56391194 56391391 56391194 ID=Msa0609000-mRNA-1:exon:14524;Parent=Msa0609000-mRNA-1
chr4_2 exon 56391433 56391510 56391433 ID=Msa0609000-mRNA-1:exon:14523;Parent=Msa0609000-mRNA-1
chr4_2 exon 56391602 56391715 56391602 ID=Msa0609000-mRNA-1:exon:14522;Parent=Msa0609000-mRNA-1
chr4_2 exon 56394025 56394165 56394025 ID=Msa0609000-mRNA-1:exon:14521;Parent=Msa0609000-mRNA-1
chr4_2 exon 56394277 56394413 56394277 ID=Msa0609000-mRNA-1:exon:14520;Parent=Msa0609000-mRNA-1
chr4_2 five_prime_UTR 56394277 56394413 56394277 ID=Msa0609000-mRNA-1:five_prime_utr;Parent=Msa0609000-mRNA-1
chr4_2 five_prime_UTR 56394140 56394165 56394140 ID=Msa0609000-mRNA-1:five_prime_utr;Parent=Msa0609000-mRNA-1
chr4_2 CDS 56394025 56394139 56394025 ID=Msa0609000-mRNA-1:cds;Parent=Msa0609000-mRNA-1
chr4_2 CDS 56391602 56391715 56391602 ID=Msa0609000-mRNA-1:cds;Parent=Msa0609000-mRNA-1
chr4_2 CDS 56391464 56391510 56391464 ID=Msa0609000-mRNA-1:cds;Parent=Msa0609000-mRNA-1
chr4_2 three_prime_UTR 56391433 56391463 56391433 ID=Msa0609000-mRNA-1:three_prime_utr;Parent=Msa0609000-mRNA-1
chr4_2 three_prime_UTR 56391194 56391391 56391194 ID=Msa0609000-mRNA-1:three_prime_utr;Parent=Msa0609000-mRNA-1
Gene Sequence

>Msa0609000

ATGAGTGGAACAGAGAAAAGTGGTTCAGGAACAACCAAAACTCCAGCTGATTTCCTCAAATCCATTCGTGGTAGACCTGTGGTTGTTAAGCTCAACTCTGGTGTTGACTATCGAGGTATCCTAGCTTGTCTAGATGGGTATATGAATATTGCAATGGAACAAACAGAGGAGTATGTTAATGGACAGCTGAAGAACAAGTATGGTGATGCATTCATTCGAGGGAATAATGTTTTGTACATCAGTACCTCAAAGAGGACTCTAGCAGAAGGGGCTTAA

Protein sequence

>Msa0609000

MSGTEKSGSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA*