AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1381650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1381650 MtrunA17_Chr4g0046801 99.738 381 1 0 1 381 80 460 0.0 754
Msa1381650 MtrunA17_Chr4g0046801 99.475 381 2 0 1 381 4 384 0.0 751
Msa1381650 MtrunA17_Chr8g0342711 99.738 381 1 0 1 381 156 536 0.0 754
Msa1381650 MtrunA17_Chr8g0342711 99.475 381 2 0 1 381 4 384 0.0 751
Msa1381650 MtrunA17_Chr8g0342711 99.475 381 2 0 1 381 80 460 0.0 751
Msa1381650 MtrunA17_Chr4g0041641 99.738 381 1 0 1 381 81 461 0.0 753
Msa1381650 MtrunA17_Chr4g0041641 99.475 381 2 0 1 381 5 385 0.0 750
Msa1381650 MtrunA17_Chr4g0041701 99.475 381 2 0 1 381 153 533 0.0 752
Msa1381650 MtrunA17_Chr4g0041701 99.475 381 2 0 1 381 1 381 0.0 751
Msa1381650 MtrunA17_Chr4g0041701 99.475 381 2 0 1 381 77 457 0.0 751
Msa1381650 MtrunA17_Chr8g0377821 99.737 380 1 0 1 380 9 388 0.0 751
Msa1381650 MtrunA17_Chr4g0048591 99.213 381 3 0 1 381 156 536 0.0 749
Msa1381650 MtrunA17_Chr4g0048591 98.950 381 4 0 1 381 4 384 0.0 747
Msa1381650 MtrunA17_Chr4g0048591 98.950 381 4 0 1 381 80 460 0.0 747
Msa1381650 MtrunA17_Chr4g0046831 95.538 381 1 1 1 381 232 596 0.0 711
Msa1381650 MtrunA17_Chr4g0046831 95.013 381 3 1 1 381 4 368 0.0 705
Msa1381650 MtrunA17_Chr7g0274921 99.563 229 1 0 153 381 3 231 6.66e-163 455
Msa1381650 MtrunA17_Chr7g0274921 99.127 229 2 0 1 229 3 231 7.57e-162 453
Msa1381650 MtrunA17_Chr7g0274921 99.127 229 2 0 77 305 3 231 7.57e-162 453
Msa1381650 MtrunA17_Chr1g0181441 99.561 228 1 0 1 228 1 228 3.94e-161 451
Msa1381650 MtrunA17_Chr1g0181441 99.561 228 1 0 77 304 1 228 3.94e-161 451
Msa1381650 MtrunA17_Chr1g0181441 99.561 228 1 0 153 380 1 228 3.94e-161 451
Msa1381650 MtrunA17_Chr4g0041751 88.596 228 26 0 1 228 1 228 1.83e-141 401
Msa1381650 MtrunA17_Chr4g0041751 88.596 228 26 0 77 304 1 228 1.83e-141 401
Msa1381650 MtrunA17_Chr4g0041751 88.596 228 26 0 153 380 1 228 1.83e-141 401
Msa1381650 MtrunA17_Chr6g0475961 99.471 189 1 0 1 189 4 192 4.12e-131 374
Msa1381650 MtrunA17_Chr6g0475961 99.471 189 1 0 77 265 4 192 4.12e-131 374
Msa1381650 MtrunA17_Chr6g0475961 99.471 189 1 0 153 341 4 192 4.12e-131 374
Msa1381650 MtrunA17_Chr6g0475961 99.346 153 1 0 229 381 4 156 6.55e-104 305
Msa1381650 MtrunA17_Chr4g0037241 80.263 152 30 0 1 152 1 152 2.80e-81 245
Msa1381650 MtrunA17_Chr4g0037241 80.263 152 30 0 229 380 1 152 2.80e-81 245
Msa1381650 MtrunA17_Chr4g0037241 79.605 152 31 0 77 228 1 152 4.61e-81 244
Msa1381650 MtrunA17_Chr4g0037241 79.605 152 31 0 153 304 1 152 4.61e-81 244
Msa1381650 MtrunA17_Chr5g0444101 80.263 152 30 0 1 152 1 152 2.80e-81 245
Msa1381650 MtrunA17_Chr5g0444101 80.263 152 30 0 229 380 1 152 2.80e-81 245
Msa1381650 MtrunA17_Chr5g0444101 79.605 152 31 0 77 228 1 152 4.61e-81 244
Msa1381650 MtrunA17_Chr5g0444101 79.605 152 31 0 153 304 1 152 4.61e-81 244
Msa1381650 MtrunA17_Chr8g0374171 95.276 127 6 0 43 169 40 166 5.60e-72 222
Msa1381650 MtrunA17_Chr8g0374171 95.276 127 6 0 195 321 40 166 5.60e-72 222
Msa1381650 MtrunA17_Chr8g0374171 94.488 127 7 0 119 245 40 166 8.82e-72 221
Msa1381650 MtrunA17_Chr8g0374171 96.364 110 4 0 271 380 40 149 7.88e-61 193
Msa1381650 MtrunA17_Chr8g0374171 95.699 93 4 0 1 93 74 166 5.79e-47 157
Msa1381650 MtrunA17_Chr6g0475951 100.000 77 0 0 305 381 1 77 9.33e-48 156
Msa1381650 MtrunA17_Chr6g0475951 98.701 77 1 0 1 77 1 77 8.73e-47 154
Msa1381650 MtrunA17_Chr6g0475951 98.701 77 1 0 77 153 1 77 8.73e-47 154
Msa1381650 MtrunA17_Chr6g0475951 98.701 77 1 0 229 305 1 77 8.73e-47 154
Msa1381650 MtrunA17_Chr6g0475951 97.403 77 2 0 153 229 1 77 1.43e-46 153
Msa1381650 MtrunA17_Chr7g0266661 98.701 77 1 0 1 77 1 77 4.36e-47 157
Msa1381650 MtrunA17_Chr7g0266661 98.701 77 1 0 77 153 1 77 4.36e-47 157
Msa1381650 MtrunA17_Chr7g0266661 98.701 77 1 0 229 305 1 77 4.36e-47 157
Msa1381650 MtrunA17_Chr7g0266661 98.701 77 1 0 305 381 1 77 5.88e-47 156
Msa1381650 MtrunA17_Chr7g0266661 97.403 77 2 0 153 229 1 77 7.20e-47 156
Msa1381650 MtrunA17_Chr1g0178381 98.701 77 1 0 1 77 1 77 4.36e-47 157
Msa1381650 MtrunA17_Chr1g0178381 98.701 77 1 0 77 153 1 77 4.36e-47 157
Msa1381650 MtrunA17_Chr1g0178381 98.701 77 1 0 229 305 1 77 4.36e-47 157
Msa1381650 MtrunA17_Chr1g0178381 98.701 77 1 0 305 381 1 77 5.88e-47 156
Msa1381650 MtrunA17_Chr1g0178381 97.403 77 2 0 153 229 1 77 7.20e-47 156
Msa1381650 MtrunA17_Chr3g0127481 98.701 77 1 0 1 77 1 77 4.36e-47 157
Msa1381650 MtrunA17_Chr3g0127481 98.701 77 1 0 77 153 1 77 4.36e-47 157
Msa1381650 MtrunA17_Chr3g0127481 98.701 77 1 0 229 305 1 77 4.36e-47 157
Msa1381650 MtrunA17_Chr3g0127481 98.701 77 1 0 305 381 1 77 5.88e-47 156
Msa1381650 MtrunA17_Chr3g0127481 97.403 77 2 0 153 229 1 77 7.20e-47 156
Msa1381650 MtrunA17_Chr8g0380181 97.436 78 2 0 1 78 1 78 1.47e-46 156
Msa1381650 MtrunA17_Chr8g0380181 97.436 78 2 0 77 154 1 78 1.47e-46 156
Msa1381650 MtrunA17_Chr8g0380181 97.436 78 2 0 229 306 1 78 1.47e-46 156
Msa1381650 MtrunA17_Chr8g0380181 100.000 76 0 0 305 380 1 76 1.70e-46 156
Msa1381650 MtrunA17_Chr8g0380181 96.154 78 3 0 153 230 1 78 2.64e-46 155
Msa1381650 MtrunA17_Chr5g0413361 97.436 78 2 0 1 78 1 78 1.53e-46 156
Msa1381650 MtrunA17_Chr5g0413361 97.436 78 2 0 77 154 1 78 1.53e-46 156
Msa1381650 MtrunA17_Chr5g0413361 97.436 78 2 0 229 306 1 78 1.53e-46 156
Msa1381650 MtrunA17_Chr5g0413361 100.000 76 0 0 305 380 1 76 1.80e-46 156
Msa1381650 MtrunA17_Chr5g0413361 96.154 78 3 0 153 230 1 78 2.76e-46 155
Msa1381650 MtrunA17_Chr1g0169371 71.053 76 22 0 1 76 215 290 1.44e-26 107
Msa1381650 MtrunA17_Chr1g0169371 71.053 76 22 0 77 152 215 290 1.44e-26 107
Msa1381650 MtrunA17_Chr1g0169371 71.053 76 22 0 229 304 215 290 1.44e-26 107
Msa1381650 MtrunA17_Chr1g0169371 71.053 76 22 0 305 380 215 290 1.44e-26 107
Msa1381650 MtrunA17_Chr1g0169371 69.737 76 23 0 153 228 215 290 2.31e-26 107
Msa1381650 MtrunA17_Chr5g0433631 63.855 83 30 0 67 149 256 338 1.25e-25 105
Msa1381650 MtrunA17_Chr5g0433631 63.855 83 30 0 219 301 256 338 1.25e-25 105
Msa1381650 MtrunA17_Chr5g0433631 63.855 83 30 0 295 377 256 338 1.25e-25 105
Msa1381650 MtrunA17_Chr5g0433631 62.651 83 31 0 143 225 256 338 2.10e-25 105
Msa1381650 MtrunA17_Chr5g0433631 69.863 73 22 0 1 73 266 338 2.36e-25 105
Msa1381650 MtrunA17_Chr5g0433721 68.831 77 23 1 1 76 194 270 1.36e-25 104
Msa1381650 MtrunA17_Chr5g0433721 68.831 77 23 1 77 152 194 270 1.36e-25 104
Msa1381650 MtrunA17_Chr5g0433721 68.831 77 23 1 229 304 194 270 1.36e-25 104
Msa1381650 MtrunA17_Chr5g0433721 68.831 77 23 1 305 380 194 270 1.36e-25 104
Msa1381650 MtrunA17_Chr5g0433721 67.532 77 24 1 153 228 194 270 2.16e-25 103
Msa1381650 MtrunA17_Chr5g0424981 60.000 75 30 0 1 75 2 76 3.40e-23 92.0
Msa1381650 MtrunA17_Chr5g0424981 60.000 75 30 0 77 151 2 76 3.40e-23 92.0
Msa1381650 MtrunA17_Chr5g0424981 60.000 75 30 0 229 303 2 76 3.40e-23 92.0
Msa1381650 MtrunA17_Chr5g0424981 60.000 75 30 0 305 379 2 76 3.40e-23 92.0
Msa1381650 MtrunA17_Chr5g0424981 58.667 75 31 0 153 227 2 76 5.11e-23 91.7
Msa1381650 MtrunA17_Chr5g0428191 68.421 76 24 0 1 76 241 316 5.37e-23 98.2
Msa1381650 MtrunA17_Chr5g0428191 68.421 76 24 0 77 152 241 316 5.37e-23 98.2
Msa1381650 MtrunA17_Chr5g0428191 68.421 76 24 0 229 304 241 316 5.37e-23 98.2
Msa1381650 MtrunA17_Chr5g0428191 68.421 76 24 0 305 380 241 316 5.37e-23 98.2
Msa1381650 MtrunA17_Chr5g0428191 67.105 76 25 0 153 228 241 316 8.54e-23 97.4
Msa1381650 MtrunA17_Chr8g0374161 100.000 44 0 0 1 44 9 52 1.84e-22 89.4
Msa1381650 MtrunA17_Chr8g0374161 100.000 44 0 0 77 120 9 52 1.84e-22 89.4
Msa1381650 MtrunA17_Chr8g0374161 100.000 44 0 0 229 272 9 52 1.84e-22 89.4
Msa1381650 MtrunA17_Chr8g0374161 100.000 44 0 0 305 348 9 52 1.84e-22 89.4
Msa1381650 MtrunA17_Chr8g0374161 97.727 44 1 0 153 196 9 52 2.81e-22 89.0
Msa1381650 MtrunA17_Chr5g0433411 59.036 83 34 0 67 149 257 339 1.12e-21 94.7
Msa1381650 MtrunA17_Chr5g0433411 59.036 83 34 0 219 301 257 339 1.12e-21 94.7
Msa1381650 MtrunA17_Chr5g0433411 59.036 83 34 0 295 377 257 339 1.12e-21 94.7
Msa1381650 MtrunA17_Chr5g0433411 57.831 83 35 0 143 225 257 339 1.86e-21 94.4
Msa1381650 MtrunA17_Chr5g0433411 64.384 73 26 0 1 73 267 339 1.98e-21 94.4
Msa1381650 MtrunA17_Chr5g0433681 57.692 78 32 1 305 381 1 78 4.25e-21 86.7
Msa1381650 MtrunA17_Chr5g0433681 59.211 76 30 1 1 75 1 76 7.89e-21 85.9
Msa1381650 MtrunA17_Chr5g0433681 59.211 76 30 1 77 151 1 76 7.89e-21 85.9
Msa1381650 MtrunA17_Chr5g0433681 59.211 76 30 1 229 303 1 76 7.89e-21 85.9
Msa1381650 MtrunA17_Chr5g0433681 57.895 76 31 1 153 227 1 76 1.23e-20 85.1
Msa1381650 MtrunA17_Chr2g0298951 61.333 75 29 0 1 75 236 310 1.36e-20 91.3
Msa1381650 MtrunA17_Chr2g0298951 61.333 75 29 0 77 151 236 310 1.36e-20 91.3
Msa1381650 MtrunA17_Chr2g0298951 61.333 75 29 0 229 303 236 310 1.36e-20 91.3
Msa1381650 MtrunA17_Chr2g0298951 61.333 75 29 0 305 379 236 310 1.36e-20 91.3
Msa1381650 MtrunA17_Chr2g0298951 60.000 75 30 0 153 227 236 310 2.24e-20 90.5
Msa1381650 MtrunA17_Chr5g0433521 61.333 75 29 0 1 75 240 314 1.56e-20 91.3
Msa1381650 MtrunA17_Chr5g0433521 61.333 75 29 0 77 151 240 314 1.56e-20 91.3
Msa1381650 MtrunA17_Chr5g0433521 61.333 75 29 0 229 303 240 314 1.56e-20 91.3
Msa1381650 MtrunA17_Chr5g0433521 61.333 75 29 0 305 379 240 314 1.56e-20 91.3
Msa1381650 MtrunA17_Chr5g0433521 60.000 75 30 0 153 227 240 314 2.44e-20 90.5
Msa1381650 MtrunA17_Chr5g0433661 65.333 75 26 0 1 75 278 352 2.01e-20 91.7
Msa1381650 MtrunA17_Chr5g0433661 65.333 75 26 0 77 151 278 352 2.01e-20 91.7
Msa1381650 MtrunA17_Chr5g0433661 65.333 75 26 0 229 303 278 352 2.01e-20 91.7
Msa1381650 MtrunA17_Chr5g0433661 65.333 75 26 0 305 379 278 352 2.01e-20 91.7
Msa1381650 MtrunA17_Chr5g0433661 64.000 75 27 0 153 227 278 352 3.28e-20 90.9
Msa1381650 MtrunA17_Chr2g0298941 60.000 75 30 0 1 75 177 251 5.66e-20 88.6
Msa1381650 MtrunA17_Chr2g0298941 60.000 75 30 0 77 151 177 251 5.66e-20 88.6
Msa1381650 MtrunA17_Chr2g0298941 60.000 75 30 0 229 303 177 251 5.66e-20 88.6
Msa1381650 MtrunA17_Chr2g0298941 60.000 75 30 0 305 379 177 251 5.66e-20 88.6
Msa1381650 MtrunA17_Chr2g0298941 58.667 75 31 0 153 227 177 251 9.18e-20 87.8
Msa1381650 MtrunA17_Chr7g0259431 54.118 85 39 0 67 151 213 297 6.62e-20 89.0
Msa1381650 MtrunA17_Chr7g0259431 54.118 85 39 0 219 303 213 297 6.62e-20 89.0
Msa1381650 MtrunA17_Chr7g0259431 54.118 85 39 0 295 379 213 297 6.62e-20 89.0
Msa1381650 MtrunA17_Chr7g0259431 58.667 75 31 0 1 75 223 297 9.30e-20 88.6
Msa1381650 MtrunA17_Chr7g0259431 52.941 85 40 0 143 227 213 297 1.01e-19 88.6
Msa1381650 MtrunA17_Chr1g0169401 60.000 70 28 0 7 76 2 71 1.08e-19 82.4
Msa1381650 MtrunA17_Chr1g0169401 60.000 70 28 0 83 152 2 71 1.08e-19 82.4
Msa1381650 MtrunA17_Chr1g0169401 60.000 70 28 0 235 304 2 71 1.08e-19 82.4
Msa1381650 MtrunA17_Chr1g0169401 60.000 70 28 0 311 380 2 71 1.08e-19 82.4
Msa1381650 MtrunA17_Chr1g0169401 58.571 70 29 0 159 228 2 71 1.75e-19 82.0
Msa1381650 MtrunA17_Chr4g0003111 53.333 75 35 0 1 75 4 78 2.27e-18 79.0
Msa1381650 MtrunA17_Chr4g0003111 53.333 75 35 0 77 151 4 78 2.27e-18 79.0
Msa1381650 MtrunA17_Chr4g0003111 53.333 75 35 0 229 303 4 78 2.27e-18 79.0
Msa1381650 MtrunA17_Chr4g0003111 53.333 75 35 0 305 379 4 78 2.27e-18 79.0
Msa1381650 MtrunA17_Chr4g0003111 52.000 75 36 0 153 227 4 78 3.68e-18 78.6
Msa1381650 MtrunA17_Chr4g0041621 84.091 44 7 0 44 87 11 54 7.74e-18 77.0
Msa1381650 MtrunA17_Chr4g0041621 84.091 44 7 0 120 163 11 54 7.74e-18 77.0
Msa1381650 MtrunA17_Chr4g0041621 84.091 44 7 0 196 239 11 54 7.74e-18 77.0
Msa1381650 MtrunA17_Chr4g0041621 84.091 44 7 0 272 315 11 54 7.74e-18 77.0
Msa1381650 MtrunA17_Chr5g0433531 56.410 78 33 1 305 381 244 321 8.13e-18 83.6
Msa1381650 MtrunA17_Chr5g0433531 57.333 75 31 1 1 74 244 318 1.56e-17 82.8
Msa1381650 MtrunA17_Chr5g0433531 57.333 75 31 1 77 150 244 318 1.56e-17 82.8
Msa1381650 MtrunA17_Chr5g0433531 57.333 75 31 1 229 302 244 318 1.56e-17 82.8
Msa1381650 MtrunA17_Chr5g0433531 56.000 75 32 1 153 226 244 318 2.50e-17 82.0
Msa1381650 MtrunA17_Chr5g0433701 58.824 68 27 1 1 67 1 68 3.92e-17 75.9
Msa1381650 MtrunA17_Chr5g0433701 58.824 68 27 1 77 143 1 68 3.92e-17 75.9
Msa1381650 MtrunA17_Chr5g0433701 58.824 68 27 1 229 295 1 68 3.92e-17 75.9
Msa1381650 MtrunA17_Chr5g0433701 58.824 68 27 1 305 371 1 68 3.92e-17 75.9
Msa1381650 MtrunA17_Chr5g0433701 57.353 68 28 1 153 219 1 68 5.78e-17 75.5
Msa1381650 MtrunA17_Chr7g0223111 60.526 76 29 1 1 75 267 342 1.35e-16 80.1
Msa1381650 MtrunA17_Chr7g0223111 60.526 76 29 1 77 151 267 342 1.35e-16 80.1
Msa1381650 MtrunA17_Chr7g0223111 60.526 76 29 1 229 303 267 342 1.35e-16 80.1
Msa1381650 MtrunA17_Chr7g0223111 60.526 76 29 1 305 379 267 342 1.35e-16 80.1
Msa1381650 MtrunA17_Chr7g0223111 59.211 76 30 1 153 227 267 342 2.11e-16 79.7
Msa1381650 MtrunA17_Chr5g0424971 53.333 75 35 0 1 75 252 326 4.91e-16 78.2
Msa1381650 MtrunA17_Chr5g0424971 53.333 75 35 0 77 151 252 326 4.91e-16 78.2
Msa1381650 MtrunA17_Chr5g0424971 53.333 75 35 0 229 303 252 326 4.91e-16 78.2
Msa1381650 MtrunA17_Chr5g0424971 53.333 75 35 0 305 379 252 326 4.91e-16 78.2
Msa1381650 MtrunA17_Chr5g0424971 52.000 75 36 0 153 227 252 326 7.86e-16 77.8
Msa1381650 MtrunA17_Chr8g0346901 32.544 169 102 6 65 226 26 189 8.78e-16 79.0
Msa1381650 MtrunA17_Chr8g0346901 31.953 169 103 6 217 378 26 189 1.27e-15 78.6
Msa1381650 MtrunA17_Chr8g0346901 31.361 169 104 6 141 302 26 189 2.09e-15 77.8
Msa1381650 MtrunA17_Chr8g0346901 33.974 156 91 6 3 150 38 189 4.01e-15 77.0
Msa1381650 MtrunA17_Chr2g0322851 27.049 244 151 6 15 233 43 284 1.61e-15 76.3
Msa1381650 MtrunA17_Chr2g0322851 26.957 230 143 5 167 373 43 270 5.46e-15 74.7
Msa1381650 MtrunA17_Chr3g0126781 33.121 157 101 4 72 225 22 177 2.28e-15 77.8
Msa1381650 MtrunA17_Chr3g0126781 32.484 157 102 4 224 377 22 177 3.37e-15 77.0
Msa1381650 MtrunA17_Chr3g0126781 33.562 146 94 3 7 149 32 177 5.10e-15 76.6
Msa1381650 MtrunA17_Chr7g0275661 32.911 158 99 5 77 228 37 193 3.39e-14 73.9
Msa1381650 MtrunA17_Chr7g0275661 32.278 158 100 5 1 152 37 193 4.99e-14 73.6
Msa1381650 MtrunA17_Chr7g0275661 32.278 158 100 5 229 380 37 193 4.99e-14 73.6
Msa1381650 MtrunA17_Chr7g0275661 31.646 158 101 5 153 304 37 193 8.04e-14 72.8
Msa1381650 MtrunA17_Chr5g0433711 56.452 62 27 0 13 74 2 63 1.13e-13 65.5
Msa1381650 MtrunA17_Chr5g0433711 56.452 62 27 0 89 150 2 63 1.13e-13 65.5
Msa1381650 MtrunA17_Chr5g0433711 56.452 62 27 0 241 302 2 63 1.13e-13 65.5
Msa1381650 MtrunA17_Chr5g0433711 56.452 62 27 0 317 378 2 63 1.13e-13 65.5
Msa1381650 MtrunA17_Chr5g0433711 54.839 62 28 0 165 226 2 63 1.85e-13 65.1
Msa1381650 MtrunA17_Chr5g0433391 50.000 74 36 1 1 73 8 81 7.55e-13 63.9
Msa1381650 MtrunA17_Chr5g0433391 50.000 74 36 1 77 149 8 81 7.55e-13 63.9
Msa1381650 MtrunA17_Chr5g0433391 50.000 74 36 1 229 301 8 81 7.55e-13 63.9
Msa1381650 MtrunA17_Chr5g0433391 50.000 74 36 1 305 377 8 81 7.55e-13 63.9
Msa1381650 MtrunA17_Chr5g0433391 48.649 74 37 1 153 225 8 81 1.21e-12 63.2
Msa1381650 MtrunA17_Chr5g0433381 52.000 75 34 2 1 73 9 83 3.61e-12 62.0
Msa1381650 MtrunA17_Chr5g0433381 52.000 75 34 2 77 149 9 83 3.61e-12 62.0
Msa1381650 MtrunA17_Chr5g0433381 52.000 75 34 2 229 301 9 83 3.61e-12 62.0
Msa1381650 MtrunA17_Chr5g0433381 52.000 75 34 2 305 377 9 83 3.61e-12 62.0
Msa1381650 MtrunA17_Chr5g0433381 50.667 75 35 2 153 225 9 83 5.78e-12 61.2
Msa1381650 MtrunA17_Chr5g0396531 25.000 168 120 3 62 224 16 182 9.17e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1381650 AT4G05320.1 99.738 381 1 0 1 381 1 381 0.0 753
Msa1381650 AT4G05320.6 99.738 381 1 0 1 381 1 381 0.0 753
Msa1381650 AT4G05320.2 99.738 381 1 0 1 381 77 457 0.0 753
Msa1381650 AT4G05320.2 99.475 381 2 0 1 381 1 381 0.0 751
Msa1381650 AT4G05320.3 99.738 381 1 0 1 381 1 381 0.0 753
Msa1381650 AT4G05320.4 99.738 381 1 0 1 381 77 457 0.0 753
Msa1381650 AT4G05320.4 99.475 381 2 0 1 381 1 381 0.0 751
Msa1381650 AT5G20620.1 99.737 380 1 0 1 380 1 380 0.0 750
Msa1381650 AT4G05320.5 99.672 305 1 0 77 381 1 305 0.0 604
Msa1381650 AT4G05320.5 99.344 305 2 0 1 305 1 305 0.0 602
Msa1381650 AT4G05320.8 99.672 305 1 0 77 381 1 305 0.0 604
Msa1381650 AT4G05320.8 99.344 305 2 0 1 305 1 305 0.0 602
Msa1381650 AT4G02890.3 99.672 305 1 0 77 381 1 305 0.0 604
Msa1381650 AT4G02890.3 99.344 305 2 0 1 305 1 305 0.0 602
Msa1381650 AT4G02890.4 99.672 305 1 0 77 381 1 305 0.0 604
Msa1381650 AT4G02890.4 99.344 305 2 0 1 305 1 305 0.0 602
Msa1381650 AT5G03240.3 99.671 304 1 0 1 304 1 304 0.0 601
Msa1381650 AT5G03240.3 99.671 304 1 0 77 380 1 304 0.0 601
Msa1381650 AT5G03240.2 99.671 304 1 0 1 304 1 304 0.0 601
Msa1381650 AT5G03240.2 99.671 304 1 0 77 380 1 304 0.0 601
Msa1381650 AT5G03240.1 99.671 304 1 0 1 304 1 304 0.0 601
Msa1381650 AT5G03240.1 99.671 304 1 0 77 380 1 304 0.0 601
Msa1381650 AT5G20620.2 99.671 304 1 0 1 304 1 304 0.0 601
Msa1381650 AT5G20620.2 99.671 304 1 0 77 380 1 304 0.0 601
Msa1381650 AT1G65350.1 93.396 318 6 2 1 304 1 317 0.0 570
Msa1381650 AT1G65350.1 93.396 318 6 2 77 380 1 317 0.0 570
Msa1381650 AT3G09790.2 77.892 389 72 4 1 375 3 391 0.0 566
Msa1381650 AT3G09790.2 74.365 394 83 5 1 380 79 468 0.0 540
Msa1381650 AT3G09790.2 71.684 392 93 4 1 378 238 625 6.13e-179 512
Msa1381650 AT3G09790.2 69.077 401 99 6 1 380 155 551 5.84e-174 499
Msa1381650 AT3G09790.2 89.474 152 16 0 229 380 3 154 1.44e-83 267
Msa1381650 AT3G09790.1 77.892 389 72 4 1 375 3 391 0.0 566
Msa1381650 AT3G09790.1 74.365 394 83 5 1 380 79 468 0.0 540
Msa1381650 AT3G09790.1 71.684 392 93 4 1 378 238 625 6.13e-179 512
Msa1381650 AT3G09790.1 69.077 401 99 6 1 380 155 551 5.84e-174 499
Msa1381650 AT3G09790.1 89.474 152 16 0 229 380 3 154 1.44e-83 267
Msa1381650 AT5G37640.1 90.492 305 28 1 1 304 3 307 0.0 539
Msa1381650 AT5G37640.1 89.869 306 30 1 76 380 2 307 0.0 538
Msa1381650 AT4G02890.2 99.563 229 1 0 153 381 1 229 1.67e-162 455
Msa1381650 AT4G02890.2 99.127 229 2 0 1 229 1 229 1.83e-161 452
Msa1381650 AT4G02890.2 99.127 229 2 0 77 305 1 229 1.83e-161 452
Msa1381650 AT4G02890.1 99.563 229 1 0 153 381 1 229 1.67e-162 455
Msa1381650 AT4G02890.1 99.127 229 2 0 1 229 1 229 1.83e-161 452
Msa1381650 AT4G02890.1 99.127 229 2 0 77 305 1 229 1.83e-161 452
Msa1381650 AT4G05050.2 99.563 229 1 0 153 381 1 229 1.67e-162 455
Msa1381650 AT4G05050.2 99.127 229 2 0 1 229 1 229 1.83e-161 452
Msa1381650 AT4G05050.2 99.127 229 2 0 77 305 1 229 1.83e-161 452
Msa1381650 AT4G05050.1 99.563 229 1 0 153 381 1 229 1.67e-162 455
Msa1381650 AT4G05050.1 99.127 229 2 0 1 229 1 229 1.83e-161 452
Msa1381650 AT4G05050.1 99.127 229 2 0 77 305 1 229 1.83e-161 452
Msa1381650 AT4G05050.3 99.563 229 1 0 153 381 1 229 1.67e-162 455
Msa1381650 AT4G05050.3 99.127 229 2 0 1 229 1 229 1.83e-161 452
Msa1381650 AT4G05050.3 99.127 229 2 0 77 305 1 229 1.83e-161 452
Msa1381650 AT1G55060.1 93.860 228 14 0 1 228 1 228 5.67e-152 428
Msa1381650 AT1G55060.1 93.860 228 14 0 77 304 1 228 5.67e-152 428
Msa1381650 AT1G55060.1 93.860 228 14 0 153 380 1 228 5.67e-152 428
Msa1381650 AT4G05320.7 100.000 153 0 0 229 381 1 153 6.20e-105 306
Msa1381650 AT4G05320.7 99.346 153 1 0 1 153 1 153 6.54e-104 303
Msa1381650 AT4G05320.7 98.693 153 2 0 77 229 1 153 1.07e-103 303
Msa1381650 AT4G05320.7 98.693 153 2 0 153 305 1 153 1.07e-103 303
Msa1381650 AT4G05050.4 100.000 153 0 0 229 381 1 153 6.20e-105 306
Msa1381650 AT4G05050.4 99.346 153 1 0 1 153 1 153 6.54e-104 303
Msa1381650 AT4G05050.4 98.693 153 2 0 77 229 1 153 1.07e-103 303
Msa1381650 AT4G05050.4 98.693 153 2 0 153 305 1 153 1.07e-103 303
Msa1381650 AT1G31340.1 81.046 153 29 0 229 381 1 153 1.13e-82 249
Msa1381650 AT1G31340.1 78.846 156 33 0 1 156 1 156 1.17e-81 246
Msa1381650 AT1G31340.1 78.205 156 34 0 77 232 1 156 1.89e-81 246
Msa1381650 AT1G31340.1 78.205 156 34 0 153 308 1 156 1.89e-81 246
Msa1381650 AT2G35635.1 79.739 153 31 0 1 153 1 153 6.51e-81 244
Msa1381650 AT2G35635.1 79.739 153 31 0 229 381 1 153 9.22e-81 244
Msa1381650 AT2G35635.1 79.085 153 32 0 77 229 1 153 1.06e-80 244
Msa1381650 AT2G35635.1 79.085 153 32 0 153 305 1 153 1.06e-80 244
Msa1381650 AT2G36170.1 98.701 77 1 0 1 77 1 77 6.01e-47 157
Msa1381650 AT2G36170.1 98.701 77 1 0 77 153 1 77 6.01e-47 157
Msa1381650 AT2G36170.1 98.701 77 1 0 229 305 1 77 6.01e-47 157
Msa1381650 AT2G36170.1 98.701 77 1 0 305 381 1 77 7.53e-47 156
Msa1381650 AT2G36170.1 97.403 77 2 0 153 229 1 77 9.94e-47 156
Msa1381650 AT3G52590.1 98.701 77 1 0 1 77 1 77 6.01e-47 157
Msa1381650 AT3G52590.1 98.701 77 1 0 77 153 1 77 6.01e-47 157
Msa1381650 AT3G52590.1 98.701 77 1 0 229 305 1 77 6.01e-47 157
Msa1381650 AT3G52590.1 98.701 77 1 0 305 381 1 77 7.53e-47 156
Msa1381650 AT3G52590.1 97.403 77 2 0 153 229 1 77 9.94e-47 156
Msa1381650 AT3G62250.1 97.436 78 2 0 1 78 1 78 2.11e-46 156
Msa1381650 AT3G62250.1 97.436 78 2 0 77 154 1 78 2.11e-46 156
Msa1381650 AT3G62250.1 97.436 78 2 0 229 306 1 78 2.11e-46 156
Msa1381650 AT3G62250.1 100.000 76 0 0 305 380 1 76 2.48e-46 156
Msa1381650 AT3G62250.1 96.154 78 3 0 153 230 1 78 3.75e-46 155
Msa1381650 AT2G47110.2 97.436 78 2 0 1 78 1 78 2.13e-46 156
Msa1381650 AT2G47110.2 97.436 78 2 0 77 154 1 78 2.13e-46 156
Msa1381650 AT2G47110.2 97.436 78 2 0 229 306 1 78 2.13e-46 156
Msa1381650 AT2G47110.2 100.000 76 0 0 305 380 1 76 2.48e-46 156
Msa1381650 AT2G47110.2 96.154 78 3 0 153 230 1 78 3.84e-46 155
Msa1381650 AT2G47110.1 97.436 78 2 0 1 78 1 78 2.13e-46 156
Msa1381650 AT2G47110.1 97.436 78 2 0 77 154 1 78 2.13e-46 156
Msa1381650 AT2G47110.1 97.436 78 2 0 229 306 1 78 2.13e-46 156
Msa1381650 AT2G47110.1 100.000 76 0 0 305 380 1 76 2.48e-46 156
Msa1381650 AT2G47110.1 96.154 78 3 0 153 230 1 78 3.84e-46 155
Msa1381650 AT1G23410.1 100.000 76 0 0 1 76 1 76 4.27e-46 155
Msa1381650 AT1G23410.1 100.000 76 0 0 77 152 1 76 4.27e-46 155
Msa1381650 AT1G23410.1 100.000 76 0 0 229 304 1 76 4.27e-46 155
Msa1381650 AT1G23410.1 100.000 76 0 0 305 380 1 76 4.27e-46 155
Msa1381650 AT1G23410.1 98.684 76 1 0 153 228 1 76 7.77e-46 155
Msa1381650 AT1G53930.1 49.091 165 54 7 160 301 1 158 3.27e-33 122
Msa1381650 AT1G53930.1 49.091 165 54 7 8 149 1 158 4.52e-33 121
Msa1381650 AT1G53930.1 49.091 165 54 7 236 377 1 158 4.52e-33 121
Msa1381650 AT1G53930.1 48.485 165 55 7 84 225 1 158 6.95e-33 121
Msa1381650 AT1G53930.1 75.342 73 18 0 1 73 86 158 3.11e-30 114
Msa1381650 AT1G53950.1 41.463 164 55 3 223 379 14 143 5.72e-26 102
Msa1381650 AT1G53950.1 40.854 164 56 3 71 227 14 143 9.19e-26 101
Msa1381650 AT1G53950.1 40.854 164 56 3 147 303 14 143 9.19e-26 101
Msa1381650 AT1G53950.1 43.038 158 49 3 1 151 20 143 1.05e-25 101
Msa1381650 AT1G11980.1 54.545 77 35 0 1 77 1 77 3.63e-22 89.7
Msa1381650 AT1G11980.1 54.545 77 35 0 77 153 1 77 3.63e-22 89.7
Msa1381650 AT1G11980.1 54.545 77 35 0 229 305 1 77 3.63e-22 89.7
Msa1381650 AT1G11980.1 54.545 77 35 0 305 381 1 77 3.82e-22 89.7
Msa1381650 AT1G11980.1 53.247 77 36 0 153 229 1 77 5.81e-22 89.4
Msa1381650 AT2G46500.3 35.862 145 90 2 7 148 40 184 9.59e-19 87.8
Msa1381650 AT2G46500.3 35.862 145 90 2 235 376 40 184 9.59e-19 87.8
Msa1381650 AT2G46500.3 35.172 145 91 2 159 300 40 184 1.64e-18 87.0
Msa1381650 AT2G46500.1 35.862 145 90 2 7 148 40 184 1.49e-18 87.8
Msa1381650 AT2G46500.1 35.862 145 90 2 235 376 40 184 1.49e-18 87.8
Msa1381650 AT2G46500.1 35.172 145 91 2 159 300 40 184 2.48e-18 87.0
Msa1381650 AT2G46500.2 35.862 145 90 2 7 148 40 184 1.49e-18 87.8
Msa1381650 AT2G46500.2 35.862 145 90 2 235 376 40 184 1.49e-18 87.8
Msa1381650 AT2G46500.2 35.172 145 91 2 159 300 40 184 2.48e-18 87.0
Msa1381650 AT1G53945.1 38.356 146 53 3 1 143 1 112 4.68e-17 77.0
Msa1381650 AT1G53945.1 38.356 146 53 3 229 371 1 112 4.68e-17 77.0
Msa1381650 AT1G53945.1 37.671 146 54 3 77 219 1 112 7.32e-17 76.6
Msa1381650 AT1G53945.1 37.671 146 54 3 153 295 1 112 7.32e-17 76.6
Msa1381650 AT5G24240.1 34.483 145 90 3 83 223 38 181 2.30e-13 72.0
Msa1381650 AT5G24240.1 33.793 145 91 3 7 147 38 181 3.39e-13 71.2
Msa1381650 AT5G24240.1 33.793 145 91 3 235 375 38 181 3.39e-13 71.2
Msa1381650 AT5G24240.1 33.103 145 92 3 159 299 38 181 5.40e-13 70.9
Msa1381650 AT5G24240.2 34.483 145 90 3 83 223 38 181 2.30e-13 72.0
Msa1381650 AT5G24240.2 33.793 145 91 3 7 147 38 181 3.39e-13 71.2
Msa1381650 AT5G24240.2 33.793 145 91 3 235 375 38 181 3.39e-13 71.2
Msa1381650 AT5G24240.2 33.103 145 92 3 159 299 38 181 5.40e-13 70.9

Find 110 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATCCTCCAATTGCTTTC+CGG 0.228225 tig0020442:+104701 None:intergenic
ACCCTCTTTGTCCTGGATCT+TGG 0.274270 tig0020442:+105211 None:intergenic
AATGAAGAGTGGATTCCTTT+TGG 0.288937 tig0020442:+104883 None:intergenic
AAAATAAGCCTCTGCTGATC+TGG 0.304914 tig0020442:+104498 None:intergenic
ACCCTCTTTGTCCTGAATCT+TGG 0.309404 tig0020442:+105439 None:intergenic
CAGCAGAGGCTTATCTTTGC+AGG 0.323151 tig0020442:-105176 Msa1381650:CDS
ATATTTGTGAAGACACTTAC+TGG 0.340523 tig0020442:-104603 Msa1381650:CDS
CAGCAGAGGCTTATCTTTGC+TGG 0.346608 tig0020442:-105404 Msa1381650:CDS
AATGCAAAGTAGATTCCTTC+TGG 0.349783 tig0020442:+104655 None:intergenic
TAATGTCAAGGCCAAGATTC+AGG 0.350237 tig0020442:-105450 Msa1381650:CDS
AAAGGAATCCACTCTTCATT+TGG 0.350557 tig0020442:-104880 Msa1381650:CDS
GAAGGAATCTACTTTGCATT+TGG 0.357379 tig0020442:-104652 Msa1381650:CDS
AAGATAAGCCTCTGCTGATC+TGG 0.372442 tig0020442:+104954 None:intergenic
CAGCAGAGGCTTATCTTTGC+TGG 0.372605 tig0020442:-104948 Msa1381650:CDS
TAATGTCAAGGCTAAAATTC+AGG 0.376104 tig0020442:-104766 Msa1381650:CDS
AATGAAGGGTAGATTCCTTC+TGG 0.382623 tig0020442:+105339 None:intergenic
TACTGGGAAGACTATTACCT+TGG 0.388796 tig0020442:-104586 Msa1381650:CDS
GACGGGAAAGACTATTACTT+TGG 0.390154 tig0020442:-105042 Msa1381650:CDS
AATGAAGGGTGGATTCCTTC+TGG 0.393830 tig0020442:+105111 None:intergenic
GAAGGAATCCACCCTTCATT+TGG 0.394555 tig0020442:-105108 Msa1381650:CDS
AAGATAAGCCTCTGCTGATC+AGG 0.398269 tig0020442:+105410 None:intergenic
AAGATAAGCCTCTGCTGATC+AGG 0.404708 tig0020442:+105182 None:intergenic
GAAGGAATCTACCCTTCATT+TGG 0.416312 tig0020442:-105336 Msa1381650:CDS
TCTGGATGTTATAATCTGCT+AGG 0.432083 tig0020442:+105357 None:intergenic
GTGGGATACCCTCTTTGTCC+TGG 0.442832 tig0020442:+105204 None:intergenic
AAAATTAGTCTCTGCTGGTC+TGG 0.443739 tig0020442:+104726 None:intergenic
TCAATCTAAGCACCAAATGA+AGG 0.460679 tig0020442:+105096 None:intergenic
CTTGGCCTTGACATTATCAA+TGG 0.462747 tig0020442:+105229 None:intergenic
GCTGGCAAGCAACTTGAAGA+TGG 0.464410 tig0020442:-104930 Msa1381650:CDS
AAATAAGCCTCTGCTGATCT+GGG 0.465164 tig0020442:+104499 None:intergenic
TCAATCTAAGCACCAAATGA+AGG 0.467207 tig0020442:+105324 None:intergenic
CACCCTAGAGGTTGAATCCT+CGG 0.468211 tig0020442:-105255 Msa1381650:CDS
GGCTAAAATTCAGGATAAAG+AGG 0.478339 tig0020442:-104757 Msa1381650:CDS
CATTTGGTGCTTAGATTGAG+AGG 0.480984 tig0020442:-105092 Msa1381650:CDS
CATTTGGTGCTTAGATTGAG+AGG 0.480984 tig0020442:-105320 Msa1381650:CDS
ATTGGAGGATGGTCGTACTT+TGG 0.488133 tig0020442:-104691 Msa1381650:CDS
ATCTTTGTGAAAACATTGAC+TGG 0.491047 tig0020442:-105515 Msa1381650:CDS
AGCAGAGGCTTATCTTTGCT+GGG 0.491816 tig0020442:-105403 Msa1381650:CDS
CTGGATGTTATAATCTGCTA+GGG 0.501082 tig0020442:+105358 None:intergenic
GGGAAAGACTATTACTTTGG+AGG 0.502909 tig0020442:-105039 Msa1381650:CDS
TCTGGATGTTATAATCAGCT+AGG 0.505255 tig0020442:+105129 None:intergenic
TGGGAAGACTATTACCTTGG+AGG 0.507917 tig0020442:-104583 Msa1381650:CDS
GAAAGCTAAGATTCAAGATA+AGG 0.516683 tig0020442:-104988 Msa1381650:CDS
TAATGTCAAGGCCAAGATCC+AGG 0.518614 tig0020442:-105222 Msa1381650:CDS
TGCTGATTATAATATCCAAA+AGG 0.520701 tig0020442:-104898 Msa1381650:CDS
AAAGACTATTACTTTGGAGG+TGG 0.523715 tig0020442:-105036 Msa1381650:CDS
ATATTCGTCAAGACTTTGAC+CGG 0.529492 tig0020442:-105287 Msa1381650:CDS
TGATTCCACCTCAAGGGTGA+TGG 0.532738 tig0020442:+105487 None:intergenic
GCTGGCAAGCAGTTGGAGGA+TGG 0.535241 tig0020442:-104474 Msa1381650:CDS
GCTGGGAAACAGCTTGAGGA+TGG 0.536276 tig0020442:-105386 Msa1381650:CDS
GTTGGAGGATGGTCGTACTC+TGG 0.539382 tig0020442:-104463 Msa1381650:CDS
TTTGGATATTATAATCAGCA+AGG 0.551320 tig0020442:+104901 None:intergenic
GCAGGGAAACAACTAGAAGA+TGG 0.551920 tig0020442:-105158 Msa1381650:CDS
TATCCGAGGATTCAACCTCT+AGG 0.556980 tig0020442:+105252 None:intergenic
AGCTAAGATTCAAGATAAGG+AGG 0.557195 tig0020442:-104985 Msa1381650:CDS
GCCGGAAAGCAATTGGAGGA+TGG 0.558534 tig0020442:-104702 Msa1381650:CDS
CATCTTGTTCTTCGTCTCCG+TGG 0.558629 tig0020442:-104408 Msa1381650:CDS
AGCAAAGATACAAGATAAGG+AGG 0.559260 tig0020442:-104529 Msa1381650:CDS
CTTGTTCTTCGTCTCCGTGG+TGG 0.562924 tig0020442:-104405 Msa1381650:CDS
GAAAGCAAAGATACAAGATA+AGG 0.565523 tig0020442:-104532 Msa1381650:CDS
CTTTGCTGGGAAACAGCTTG+AGG 0.565867 tig0020442:-105390 Msa1381650:CDS
TTGGATATTATAATCAGCAA+GGG 0.567259 tig0020442:+104902 None:intergenic
ATCCGAGGATTCAACCTCTA+GGG 0.568186 tig0020442:+105253 None:intergenic
GCTAAAATTCAGGATAAAGA+GGG 0.570872 tig0020442:-104756 Msa1381650:CDS
ATAAGCCTCTGCTGATCTGG+AGG 0.572008 tig0020442:+104957 None:intergenic
AGCAGAGGCTTATCTTTGCA+GGG 0.572317 tig0020442:-105175 Msa1381650:CDS
GAAGACTATTACCTTGGAGG+TGG 0.573223 tig0020442:-104580 Msa1381650:CDS
GGATTCAACCTCTAGGGTGA+TGG 0.575072 tig0020442:+105259 None:intergenic
ATAAGCCTCTGCTGATCAGG+TGG 0.575147 tig0020442:+105185 None:intergenic
GACATTATCAATGGTATCCG+AGG 0.576477 tig0020442:+105238 None:intergenic
ATAAGCCTCTGCTGATCAGG+AGG 0.578405 tig0020442:+105413 None:intergenic
GGAGACGAAGAACAAGATGA+AGG 0.578463 tig0020442:+104412 None:intergenic
TATTTGTGAAGACACTTACT+GGG 0.579572 tig0020442:-104602 Msa1381650:CDS
ATCAGAGCTTTCCACCTCCA+AGG 0.582807 tig0020442:+104569 None:intergenic
CAATCTAAGCACCAAATGAA+GGG 0.584307 tig0020442:+105325 None:intergenic
GCAAGCAACTTGAAGATGGA+AGG 0.585193 tig0020442:-104926 Msa1381650:CDS
ATTAGTCTCTGCTGGTCTGG+AGG 0.592481 tig0020442:+104729 None:intergenic
CAATCTAAGCACCAAATGAA+GGG 0.592660 tig0020442:+105097 None:intergenic
TATCTGATGATTCCACCTCA+AGG 0.595447 tig0020442:+105480 None:intergenic
CTGGATGTTATAATCAGCTA+GGG 0.596159 tig0020442:+105130 None:intergenic
CAAAACCATCACCCTTGAGG+TGG 0.600034 tig0020442:-105492 Msa1381650:CDS
ATCTGATGATTCCACCTCAA+GGG 0.601696 tig0020442:+105481 None:intergenic
ATAAGCCTCTGCTGATCTGG+GGG 0.604365 tig0020442:+104501 None:intergenic
CCGCAAAACCAAATGAAGAG+TGG 0.607687 tig0020442:+104872 None:intergenic
GCTAAGATTCAAGATAAGGA+GGG 0.608071 tig0020442:-104984 Msa1381650:CDS
GGCCAAGATTCAGGACAAAG+AGG 0.609724 tig0020442:-105441 Msa1381650:CDS
AATAAGCCTCTGCTGATCTG+GGG 0.611344 tig0020442:+104500 None:intergenic
GGCCAAGATCCAGGACAAAG+AGG 0.613915 tig0020442:-105213 Msa1381650:CDS
TGATACAATTGATAATGTCA+AGG 0.616929 tig0020442:-104778 Msa1381650:CDS
GCCAAGATCCAGGACAAAGA+GGG 0.620887 tig0020442:-105212 Msa1381650:CDS
GCCAAGATTCAGGACAAAGA+GGG 0.620887 tig0020442:-105440 Msa1381650:CDS
GCAAAGATACAAGATAAGGA+GGG 0.621833 tig0020442:-104528 Msa1381650:CDS
GGAAACAACTAGAAGATGGA+AGG 0.625020 tig0020442:-105154 Msa1381650:CDS
GGCTGATTATAATATCCAGA+AGG 0.627715 tig0020442:-104670 Msa1381650:CDS
TTGGTGCTTAGATTGAGAGG+TGG 0.628688 tig0020442:-105089 Msa1381650:CDS
TTGGTGCTTAGATTGAGAGG+TGG 0.628688 tig0020442:-105317 Msa1381650:CDS
GGATACCATTGATAATGTCA+AGG 0.634466 tig0020442:-105234 Msa1381650:CDS
TAAGCCTCTGCTGATCTGGA+GGG 0.637169 tig0020442:+104958 None:intergenic
AGATACAATTGATAATGTCA+AGG 0.641099 tig0020442:-105462 Msa1381650:CDS
GAGACGAAGAACAAGATGAA+GGG 0.641854 tig0020442:+104413 None:intergenic
TGGCAAAACCATCACCCTTG+AGG 0.648872 tig0020442:-105495 Msa1381650:CDS
TCTAAGCACCAAATGAAGGG+TGG 0.651428 tig0020442:+105100 None:intergenic
GTATCCCTCCTGATCAGCAG+AGG 0.654458 tig0020442:-105418 Msa1381650:CDS
AGCAGATTATAACATCCAGA+AGG 0.655688 tig0020442:-105354 Msa1381650:CDS
TAAGCCTCTGCTGATCAGGA+GGG 0.663439 tig0020442:+105414 None:intergenic
GTATCCCTCCAGATCAGCAG+AGG 0.664066 tig0020442:-104962 Msa1381650:CDS
GTATCCCACCTGATCAGCAG+AGG 0.664066 tig0020442:-105190 Msa1381650:CDS
TAAGCCTCTGCTGATCAGGT+GGG 0.669417 tig0020442:+105186 None:intergenic
AGCTGATTATAACATCCAGA+AGG 0.677696 tig0020442:-105126 Msa1381650:CDS
AACACGCTTAGAAGCCACCA+CGG 0.699059 tig0020442:+104391 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATACAATTGATAATGTCA+AGG - tig0020442:104457-104476 Msa1381650:CDS 25.0%
! TTGGATATTATAATCAGCAA+GGG + tig0020442:105020-105039 None:intergenic 25.0%
! TTTGGATATTATAATCAGCA+AGG + tig0020442:105021-105040 None:intergenic 25.0%
!! TGCTGATTATAATATCCAAA+AGG - tig0020442:105021-105040 Msa1381650:CDS 25.0%
!!! TGATACAATTGATAATGTCA+AGG - tig0020442:105141-105160 Msa1381650:CDS 25.0%
!!! AGATACAATTGATAATGTCA+AGG - tig0020442:104457-104476 Msa1381650:CDS 25.0%
! TTGGATATTATAATCAGCAA+GGG + tig0020442:105020-105039 None:intergenic 25.0%
! TTTGGATATTATAATCAGCA+AGG + tig0020442:105021-105040 None:intergenic 25.0%
!! TGCTGATTATAATATCCAAA+AGG - tig0020442:105021-105040 Msa1381650:CDS 25.0%
!!! TGATACAATTGATAATGTCA+AGG - tig0020442:105141-105160 Msa1381650:CDS 25.0%
ATCTTTGTGAAAACATTGAC+TGG - tig0020442:104404-104423 Msa1381650:CDS 30.0%
! GATTTTTGTGAAGACTTTGA+CGG - tig0020442:104859-104878 Msa1381650:CDS 30.0%
! ATTTTTGTGAAGACTTTGAC+GGG - tig0020442:104860-104879 Msa1381650:CDS 30.0%
GAAAGCTAAGATTCAAGATA+AGG - tig0020442:104931-104950 Msa1381650:CDS 30.0%
! AGTAATAGTTTTTCCGGTAA+GGG + tig0020442:105104-105123 None:intergenic 30.0%
! AAGTAATAGTTTTTCCGGTA+AGG + tig0020442:105105-105124 None:intergenic 30.0%
TACCGGAAAAACTATTACTT+TGG - tig0020442:105105-105124 Msa1381650:CDS 30.0%
! CTCCAAAGTAATAGTTTTTC+CGG + tig0020442:105110-105129 None:intergenic 30.0%
TAATGTCAAGGCTAAAATTC+AGG - tig0020442:105153-105172 Msa1381650:CDS 30.0%
GCTAAAATTCAGGATAAAGA+GGG - tig0020442:105163-105182 Msa1381650:CDS 30.0%
ATATTTGTGAAGACACTTAC+TGG - tig0020442:105316-105335 Msa1381650:CDS 30.0%
TATTTGTGAAGACACTTACT+GGG - tig0020442:105317-105336 Msa1381650:CDS 30.0%
GAAAGCAAAGATACAAGATA+AGG - tig0020442:105387-105406 Msa1381650:CDS 30.0%
ATCTTTGTGAAAACATTGAC+TGG - tig0020442:104404-104423 Msa1381650:CDS 30.0%
! GATTTTTGTGAAGACTTTGA+CGG - tig0020442:104859-104878 Msa1381650:CDS 30.0%
! ATTTTTGTGAAGACTTTGAC+GGG - tig0020442:104860-104879 Msa1381650:CDS 30.0%
GAAAGCTAAGATTCAAGATA+AGG - tig0020442:104931-104950 Msa1381650:CDS 30.0%
! AGTAATAGTTTTTCCGGTAA+GGG + tig0020442:105104-105123 None:intergenic 30.0%
! AAGTAATAGTTTTTCCGGTA+AGG + tig0020442:105105-105124 None:intergenic 30.0%
TACCGGAAAAACTATTACTT+TGG - tig0020442:105105-105124 Msa1381650:CDS 30.0%
! CTCCAAAGTAATAGTTTTTC+CGG + tig0020442:105110-105129 None:intergenic 30.0%
TAATGTCAAGGCTAAAATTC+AGG - tig0020442:105153-105172 Msa1381650:CDS 30.0%
GCTAAAATTCAGGATAAAGA+GGG - tig0020442:105163-105182 Msa1381650:CDS 30.0%
ATATTTGTGAAGACACTTAC+TGG - tig0020442:105316-105335 Msa1381650:CDS 30.0%
TATTTGTGAAGACACTTACT+GGG - tig0020442:105317-105336 Msa1381650:CDS 30.0%
GAAAGCAAAGATACAAGATA+AGG - tig0020442:105387-105406 Msa1381650:CDS 30.0%
CTGGATGTTATAATCTGCTA+GGG + tig0020442:104564-104583 None:intergenic 35.0%
TCTGGATGTTATAATCTGCT+AGG + tig0020442:104565-104584 None:intergenic 35.0%
AGCAGATTATAACATCCAGA+AGG - tig0020442:104565-104584 Msa1381650:CDS 35.0%
CAATCTAAGCACCAAATGAA+GGG + tig0020442:104597-104616 None:intergenic 35.0%
TCAATCTAAGCACCAAATGA+AGG + tig0020442:104598-104617 None:intergenic 35.0%
ATATTCGTCAAGACTTTGAC+CGG - tig0020442:104632-104651 Msa1381650:CDS 35.0%
!! GGATACCATTGATAATGTCA+AGG - tig0020442:104685-104704 Msa1381650:CDS 35.0%
CTGGATGTTATAATCAGCTA+GGG + tig0020442:104792-104811 None:intergenic 35.0%
TCTGGATGTTATAATCAGCT+AGG + tig0020442:104793-104812 None:intergenic 35.0%
AGCTGATTATAACATCCAGA+AGG - tig0020442:104793-104812 Msa1381650:CDS 35.0%
CAATCTAAGCACCAAATGAA+GGG + tig0020442:104597-104616 None:intergenic 35.0%
TCAATCTAAGCACCAAATGA+AGG + tig0020442:104598-104617 None:intergenic 35.0%
! AAAGACTATTACTTTGGAGG+TGG - tig0020442:104883-104902 Msa1381650:CDS 35.0%
AGCTAAGATTCAAGATAAGG+AGG - tig0020442:104934-104953 Msa1381650:CDS 35.0%
GCTAAGATTCAAGATAAGGA+GGG - tig0020442:104935-104954 Msa1381650:CDS 35.0%
!! AATGAAGAGTGGATTCCTTT+TGG + tig0020442:105039-105058 None:intergenic 35.0%
AAAGGAATCCACTCTTCATT+TGG - tig0020442:105039-105058 Msa1381650:CDS 35.0%
! ATTTTTGTGAAGACCCTTAC+CGG - tig0020442:105088-105107 Msa1381650:CDS 35.0%
CGGAAAAACTATTACTTTGG+AGG - tig0020442:105108-105127 Msa1381650:CDS 35.0%
GGCTAAAATTCAGGATAAAG+AGG - tig0020442:105162-105181 Msa1381650:CDS 35.0%
! AATTTTTGCCGGAAAGCAAT+TGG - tig0020442:105210-105229 Msa1381650:CDS 35.0%
GGCTGATTATAATATCCAGA+AGG - tig0020442:105249-105268 Msa1381650:CDS 35.0%
AATGCAAAGTAGATTCCTTC+TGG + tig0020442:105267-105286 None:intergenic 35.0%
GAAGGAATCTACTTTGCATT+TGG - tig0020442:105267-105286 Msa1381650:CDS 35.0%
!!! CTACTTTGCATTTGGTTTTG+AGG - tig0020442:105275-105294 Msa1381650:CDS 35.0%
AGCAAAGATACAAGATAAGG+AGG - tig0020442:105390-105409 Msa1381650:CDS 35.0%
GCAAAGATACAAGATAAGGA+GGG - tig0020442:105391-105410 Msa1381650:CDS 35.0%
CTGGATGTTATAATCTGCTA+GGG + tig0020442:104564-104583 None:intergenic 35.0%
TCTGGATGTTATAATCTGCT+AGG + tig0020442:104565-104584 None:intergenic 35.0%
AGCAGATTATAACATCCAGA+AGG - tig0020442:104565-104584 Msa1381650:CDS 35.0%
CAATCTAAGCACCAAATGAA+GGG + tig0020442:104597-104616 None:intergenic 35.0%
TCAATCTAAGCACCAAATGA+AGG + tig0020442:104598-104617 None:intergenic 35.0%
ATATTCGTCAAGACTTTGAC+CGG - tig0020442:104632-104651 Msa1381650:CDS 35.0%
!! GGATACCATTGATAATGTCA+AGG - tig0020442:104685-104704 Msa1381650:CDS 35.0%
CTGGATGTTATAATCAGCTA+GGG + tig0020442:104792-104811 None:intergenic 35.0%
TCTGGATGTTATAATCAGCT+AGG + tig0020442:104793-104812 None:intergenic 35.0%
AGCTGATTATAACATCCAGA+AGG - tig0020442:104793-104812 Msa1381650:CDS 35.0%
CAATCTAAGCACCAAATGAA+GGG + tig0020442:104597-104616 None:intergenic 35.0%
TCAATCTAAGCACCAAATGA+AGG + tig0020442:104598-104617 None:intergenic 35.0%
! AAAGACTATTACTTTGGAGG+TGG - tig0020442:104883-104902 Msa1381650:CDS 35.0%
AGCTAAGATTCAAGATAAGG+AGG - tig0020442:104934-104953 Msa1381650:CDS 35.0%
GCTAAGATTCAAGATAAGGA+GGG - tig0020442:104935-104954 Msa1381650:CDS 35.0%
!! AATGAAGAGTGGATTCCTTT+TGG + tig0020442:105039-105058 None:intergenic 35.0%
AAAGGAATCCACTCTTCATT+TGG - tig0020442:105039-105058 Msa1381650:CDS 35.0%
! ATTTTTGTGAAGACCCTTAC+CGG - tig0020442:105088-105107 Msa1381650:CDS 35.0%
CGGAAAAACTATTACTTTGG+AGG - tig0020442:105108-105127 Msa1381650:CDS 35.0%
GGCTAAAATTCAGGATAAAG+AGG - tig0020442:105162-105181 Msa1381650:CDS 35.0%
! AATTTTTGCCGGAAAGCAAT+TGG - tig0020442:105210-105229 Msa1381650:CDS 35.0%
GGCTGATTATAATATCCAGA+AGG - tig0020442:105249-105268 Msa1381650:CDS 35.0%
AATGCAAAGTAGATTCCTTC+TGG + tig0020442:105267-105286 None:intergenic 35.0%
GAAGGAATCTACTTTGCATT+TGG - tig0020442:105267-105286 Msa1381650:CDS 35.0%
!!! CTACTTTGCATTTGGTTTTG+AGG - tig0020442:105275-105294 Msa1381650:CDS 35.0%
AGCAAAGATACAAGATAAGG+AGG - tig0020442:105390-105409 Msa1381650:CDS 35.0%
GCAAAGATACAAGATAAGGA+GGG - tig0020442:105391-105410 Msa1381650:CDS 35.0%
ATCTGATGATTCCACCTCAA+GGG + tig0020442:104441-104460 None:intergenic 40.0%
TATCTGATGATTCCACCTCA+AGG + tig0020442:104442-104461 None:intergenic 40.0%
TAATGTCAAGGCCAAGATTC+AGG - tig0020442:104469-104488 Msa1381650:CDS 40.0%
AATGAAGGGTAGATTCCTTC+TGG + tig0020442:104583-104602 None:intergenic 40.0%
GAAGGAATCTACCCTTCATT+TGG - tig0020442:104583-104602 Msa1381650:CDS 40.0%
!! CATTTGGTGCTTAGATTGAG+AGG - tig0020442:104599-104618 Msa1381650:CDS 40.0%
GACATTATCAATGGTATCCG+AGG + tig0020442:104684-104703 None:intergenic 40.0%
!! CTTGGCCTTGACATTATCAA+TGG + tig0020442:104465-104484 None:intergenic 40.0%
GGAAACAACTAGAAGATGGA+AGG - tig0020442:104765-104784 Msa1381650:CDS 40.0%
!! CATTTGGTGCTTAGATTGAG+AGG - tig0020442:104599-104618 Msa1381650:CDS 40.0%
GACGGGAAAGACTATTACTT+TGG - tig0020442:104877-104896 Msa1381650:CDS 40.0%
GGGAAAGACTATTACTTTGG+AGG - tig0020442:104880-104899 Msa1381650:CDS 40.0%
!!! CCACTCTTCATTTGGTTTTG+CGG - tig0020442:105047-105066 Msa1381650:CDS 40.0%
! AAAATTAGTCTCTGCTGGTC+TGG + tig0020442:105196-105215 None:intergenic 40.0%
! CAGCAGAGACTAATTTTTGC+CGG - tig0020442:105199-105218 Msa1381650:CDS 40.0%
TACTGGGAAGACTATTACCT+TGG - tig0020442:105333-105352 Msa1381650:CDS 40.0%
AAATAAGCCTCTGCTGATCT+GGG + tig0020442:105423-105442 None:intergenic 40.0%
AAAATAAGCCTCTGCTGATC+TGG + tig0020442:105424-105443 None:intergenic 40.0%
!! TATTTTTGCTGGCAAGCAGT+TGG - tig0020442:105438-105457 Msa1381650:CDS 40.0%
GAGACGAAGAACAAGATGAA+GGG + tig0020442:105509-105528 None:intergenic 40.0%
ATCTGATGATTCCACCTCAA+GGG + tig0020442:104441-104460 None:intergenic 40.0%
TATCTGATGATTCCACCTCA+AGG + tig0020442:104442-104461 None:intergenic 40.0%
TAATGTCAAGGCCAAGATTC+AGG - tig0020442:104469-104488 Msa1381650:CDS 40.0%
AATGAAGGGTAGATTCCTTC+TGG + tig0020442:104583-104602 None:intergenic 40.0%
GAAGGAATCTACCCTTCATT+TGG - tig0020442:104583-104602 Msa1381650:CDS 40.0%
!! CATTTGGTGCTTAGATTGAG+AGG - tig0020442:104599-104618 Msa1381650:CDS 40.0%
GACATTATCAATGGTATCCG+AGG + tig0020442:104684-104703 None:intergenic 40.0%
!! CTTGGCCTTGACATTATCAA+TGG + tig0020442:104465-104484 None:intergenic 40.0%
GGAAACAACTAGAAGATGGA+AGG - tig0020442:104765-104784 Msa1381650:CDS 40.0%
!! CATTTGGTGCTTAGATTGAG+AGG - tig0020442:104599-104618 Msa1381650:CDS 40.0%
GACGGGAAAGACTATTACTT+TGG - tig0020442:104877-104896 Msa1381650:CDS 40.0%
GGGAAAGACTATTACTTTGG+AGG - tig0020442:104880-104899 Msa1381650:CDS 40.0%
!!! CCACTCTTCATTTGGTTTTG+CGG - tig0020442:105047-105066 Msa1381650:CDS 40.0%
! AAAATTAGTCTCTGCTGGTC+TGG + tig0020442:105196-105215 None:intergenic 40.0%
! CAGCAGAGACTAATTTTTGC+CGG - tig0020442:105199-105218 Msa1381650:CDS 40.0%
TACTGGGAAGACTATTACCT+TGG - tig0020442:105333-105352 Msa1381650:CDS 40.0%
AAATAAGCCTCTGCTGATCT+GGG + tig0020442:105423-105442 None:intergenic 40.0%
AAAATAAGCCTCTGCTGATC+TGG + tig0020442:105424-105443 None:intergenic 40.0%
!! TATTTTTGCTGGCAAGCAGT+TGG - tig0020442:105438-105457 Msa1381650:CDS 40.0%
GAGACGAAGAACAAGATGAA+GGG + tig0020442:105509-105528 None:intergenic 40.0%
GCCAAGATTCAGGACAAAGA+GGG - tig0020442:104479-104498 Msa1381650:CDS 45.0%
ACCCTCTTTGTCCTGAATCT+TGG + tig0020442:104483-104502 None:intergenic 45.0%
AAGATAAGCCTCTGCTGATC+AGG + tig0020442:104512-104531 None:intergenic 45.0%
AGCAGAGGCTTATCTTTGCT+GGG - tig0020442:104516-104535 Msa1381650:CDS 45.0%
! TTGGTGCTTAGATTGAGAGG+TGG - tig0020442:104602-104621 Msa1381650:CDS 45.0%
!!! CTCTAGGGTGATGGTTTTTC+CGG + tig0020442:104654-104673 None:intergenic 45.0%
ATCCGAGGATTCAACCTCTA+GGG + tig0020442:104669-104688 None:intergenic 45.0%
TATCCGAGGATTCAACCTCT+AGG + tig0020442:104670-104689 None:intergenic 45.0%
TAATGTCAAGGCCAAGATCC+AGG - tig0020442:104697-104716 Msa1381650:CDS 45.0%
AAGATAAGCCTCTGCTGATC+AGG + tig0020442:104512-104531 None:intergenic 45.0%
AGCAGAGGCTTATCTTTGCA+GGG - tig0020442:104744-104763 Msa1381650:CDS 45.0%
GCAGGGAAACAACTAGAAGA+TGG - tig0020442:104761-104780 Msa1381650:CDS 45.0%
! AATGAAGGGTGGATTCCTTC+TGG + tig0020442:104811-104830 None:intergenic 45.0%
GAAGGAATCCACCCTTCATT+TGG - tig0020442:104811-104830 Msa1381650:CDS 45.0%
TCTAAGCACCAAATGAAGGG+TGG + tig0020442:104594-104613 None:intergenic 45.0%
! TTGGTGCTTAGATTGAGAGG+TGG - tig0020442:104602-104621 Msa1381650:CDS 45.0%
AAGATAAGCCTCTGCTGATC+TGG + tig0020442:104512-104531 None:intergenic 45.0%
GCAAGCAACTTGAAGATGGA+AGG - tig0020442:104993-105012 Msa1381650:CDS 45.0%
CCGCAAAACCAAATGAAGAG+TGG + tig0020442:105050-105069 None:intergenic 45.0%
! CGGCAAAAATTAGTCTCTGC+TGG + tig0020442:105201-105220 None:intergenic 45.0%
! TTTTGCCGGAAAGCAATTGG+AGG - tig0020442:105213-105232 Msa1381650:CDS 45.0%
ACCATCCTCCAATTGCTTTC+CGG + tig0020442:105221-105240 None:intergenic 45.0%
ATTGGAGGATGGTCGTACTT+TGG - tig0020442:105228-105247 Msa1381650:CDS 45.0%
!!! CATTTGGTTTTGAGGCTTCG+TGG - tig0020442:105283-105302 Msa1381650:CDS 45.0%
TGGGAAGACTATTACCTTGG+AGG - tig0020442:105336-105355 Msa1381650:CDS 45.0%
GAAGACTATTACCTTGGAGG+TGG - tig0020442:105339-105358 Msa1381650:CDS 45.0%
AATAAGCCTCTGCTGATCTG+GGG + tig0020442:105422-105441 None:intergenic 45.0%
!!! CAGCAGAGGCTTATTTTTGC+TGG - tig0020442:105427-105446 Msa1381650:CDS 45.0%
GGAGACGAAGAACAAGATGA+AGG + tig0020442:105510-105529 None:intergenic 45.0%
GCCAAGATTCAGGACAAAGA+GGG - tig0020442:104479-104498 Msa1381650:CDS 45.0%
ACCCTCTTTGTCCTGAATCT+TGG + tig0020442:104483-104502 None:intergenic 45.0%
AAGATAAGCCTCTGCTGATC+AGG + tig0020442:104512-104531 None:intergenic 45.0%
AGCAGAGGCTTATCTTTGCT+GGG - tig0020442:104516-104535 Msa1381650:CDS 45.0%
! TTGGTGCTTAGATTGAGAGG+TGG - tig0020442:104602-104621 Msa1381650:CDS 45.0%
!!! CTCTAGGGTGATGGTTTTTC+CGG + tig0020442:104654-104673 None:intergenic 45.0%
ATCCGAGGATTCAACCTCTA+GGG + tig0020442:104669-104688 None:intergenic 45.0%
TATCCGAGGATTCAACCTCT+AGG + tig0020442:104670-104689 None:intergenic 45.0%
TAATGTCAAGGCCAAGATCC+AGG - tig0020442:104697-104716 Msa1381650:CDS 45.0%
AAGATAAGCCTCTGCTGATC+AGG + tig0020442:104512-104531 None:intergenic 45.0%
AGCAGAGGCTTATCTTTGCA+GGG - tig0020442:104744-104763 Msa1381650:CDS 45.0%
GCAGGGAAACAACTAGAAGA+TGG - tig0020442:104761-104780 Msa1381650:CDS 45.0%
! AATGAAGGGTGGATTCCTTC+TGG + tig0020442:104811-104830 None:intergenic 45.0%
GAAGGAATCCACCCTTCATT+TGG - tig0020442:104811-104830 Msa1381650:CDS 45.0%
TCTAAGCACCAAATGAAGGG+TGG + tig0020442:104594-104613 None:intergenic 45.0%
! TTGGTGCTTAGATTGAGAGG+TGG - tig0020442:104602-104621 Msa1381650:CDS 45.0%
AAGATAAGCCTCTGCTGATC+TGG + tig0020442:104512-104531 None:intergenic 45.0%
GCAAGCAACTTGAAGATGGA+AGG - tig0020442:104993-105012 Msa1381650:CDS 45.0%
CCGCAAAACCAAATGAAGAG+TGG + tig0020442:105050-105069 None:intergenic 45.0%
! CGGCAAAAATTAGTCTCTGC+TGG + tig0020442:105201-105220 None:intergenic 45.0%
! TTTTGCCGGAAAGCAATTGG+AGG - tig0020442:105213-105232 Msa1381650:CDS 45.0%
ACCATCCTCCAATTGCTTTC+CGG + tig0020442:105221-105240 None:intergenic 45.0%
ATTGGAGGATGGTCGTACTT+TGG - tig0020442:105228-105247 Msa1381650:CDS 45.0%
!!! CATTTGGTTTTGAGGCTTCG+TGG - tig0020442:105283-105302 Msa1381650:CDS 45.0%
TGGGAAGACTATTACCTTGG+AGG - tig0020442:105336-105355 Msa1381650:CDS 45.0%
GAAGACTATTACCTTGGAGG+TGG - tig0020442:105339-105358 Msa1381650:CDS 45.0%
AATAAGCCTCTGCTGATCTG+GGG + tig0020442:105422-105441 None:intergenic 45.0%
!!! CAGCAGAGGCTTATTTTTGC+TGG - tig0020442:105427-105446 Msa1381650:CDS 45.0%
GGAGACGAAGAACAAGATGA+AGG + tig0020442:105510-105529 None:intergenic 45.0%
TGGCAAAACCATCACCCTTG+AGG - tig0020442:104424-104443 Msa1381650:CDS 50.0%
CAAAACCATCACCCTTGAGG+TGG - tig0020442:104427-104446 Msa1381650:CDS 50.0%
TGATTCCACCTCAAGGGTGA+TGG + tig0020442:104435-104454 None:intergenic 50.0%
GGCCAAGATTCAGGACAAAG+AGG - tig0020442:104478-104497 Msa1381650:CDS 50.0%
TAAGCCTCTGCTGATCAGGA+GGG + tig0020442:104508-104527 None:intergenic 50.0%
ATAAGCCTCTGCTGATCAGG+AGG + tig0020442:104509-104528 None:intergenic 50.0%
CAGCAGAGGCTTATCTTTGC+TGG - tig0020442:104515-104534 Msa1381650:CDS 50.0%
CTTTGCTGGGAAACAGCTTG+AGG - tig0020442:104529-104548 Msa1381650:CDS 50.0%
CGGAAAAACCATCACCCTAG+AGG - tig0020442:104652-104671 Msa1381650:CDS 50.0%
!! GGATTCAACCTCTAGGGTGA+TGG + tig0020442:104663-104682 None:intergenic 50.0%
CACCCTAGAGGTTGAATCCT+CGG - tig0020442:104664-104683 Msa1381650:CDS 50.0%
GCCAAGATCCAGGACAAAGA+GGG - tig0020442:104707-104726 Msa1381650:CDS 50.0%
ACCCTCTTTGTCCTGGATCT+TGG + tig0020442:104711-104730 None:intergenic 50.0%
TAAGCCTCTGCTGATCAGGT+GGG + tig0020442:104736-104755 None:intergenic 50.0%
ATAAGCCTCTGCTGATCAGG+TGG + tig0020442:104509-104528 None:intergenic 50.0%
CAGCAGAGGCTTATCTTTGC+AGG - tig0020442:104515-104534 Msa1381650:CDS 50.0%
TAAGCCTCTGCTGATCTGGA+GGG + tig0020442:104964-104983 None:intergenic 50.0%
ATAAGCCTCTGCTGATCTGG+AGG + tig0020442:104965-104984 None:intergenic 50.0%
CAGCAGAGGCTTATCTTTGC+TGG - tig0020442:104515-104534 Msa1381650:CDS 50.0%
GCTGGCAAGCAACTTGAAGA+TGG - tig0020442:104989-105008 Msa1381650:CDS 50.0%
!!! CATTTGGTTTTGCGGCTTCG+TGG - tig0020442:105055-105074 Msa1381650:CDS 50.0%
! ATTAGTCTCTGCTGGTCTGG+AGG + tig0020442:105193-105212 None:intergenic 50.0%
!!! TTGGTTTTGAGGCTTCGTGG+TGG - tig0020442:105286-105305 Msa1381650:CDS 50.0%
ATCAGAGCTTTCCACCTCCA+AGG + tig0020442:105353-105372 None:intergenic 50.0%
ATAAGCCTCTGCTGATCTGG+GGG + tig0020442:104965-104984 None:intergenic 50.0%
! TTTTGCTGGCAAGCAGTTGG+AGG - tig0020442:105441-105460 Msa1381650:CDS 50.0%
CATCTTGTTCTTCGTCTCCG+TGG - tig0020442:105511-105530 Msa1381650:CDS 50.0%
TGGCAAAACCATCACCCTTG+AGG - tig0020442:104424-104443 Msa1381650:CDS 50.0%
CAAAACCATCACCCTTGAGG+TGG - tig0020442:104427-104446 Msa1381650:CDS 50.0%
TGATTCCACCTCAAGGGTGA+TGG + tig0020442:104435-104454 None:intergenic 50.0%
GGCCAAGATTCAGGACAAAG+AGG - tig0020442:104478-104497 Msa1381650:CDS 50.0%
TAAGCCTCTGCTGATCAGGA+GGG + tig0020442:104508-104527 None:intergenic 50.0%
ATAAGCCTCTGCTGATCAGG+AGG + tig0020442:104509-104528 None:intergenic 50.0%
CAGCAGAGGCTTATCTTTGC+TGG - tig0020442:104515-104534 Msa1381650:CDS 50.0%
CTTTGCTGGGAAACAGCTTG+AGG - tig0020442:104529-104548 Msa1381650:CDS 50.0%
CGGAAAAACCATCACCCTAG+AGG - tig0020442:104652-104671 Msa1381650:CDS 50.0%
!! GGATTCAACCTCTAGGGTGA+TGG + tig0020442:104663-104682 None:intergenic 50.0%
CACCCTAGAGGTTGAATCCT+CGG - tig0020442:104664-104683 Msa1381650:CDS 50.0%
GCCAAGATCCAGGACAAAGA+GGG - tig0020442:104707-104726 Msa1381650:CDS 50.0%
ACCCTCTTTGTCCTGGATCT+TGG + tig0020442:104711-104730 None:intergenic 50.0%
TAAGCCTCTGCTGATCAGGT+GGG + tig0020442:104736-104755 None:intergenic 50.0%
ATAAGCCTCTGCTGATCAGG+TGG + tig0020442:104509-104528 None:intergenic 50.0%
CAGCAGAGGCTTATCTTTGC+AGG - tig0020442:104515-104534 Msa1381650:CDS 50.0%
TAAGCCTCTGCTGATCTGGA+GGG + tig0020442:104964-104983 None:intergenic 50.0%
ATAAGCCTCTGCTGATCTGG+AGG + tig0020442:104965-104984 None:intergenic 50.0%
CAGCAGAGGCTTATCTTTGC+TGG - tig0020442:104515-104534 Msa1381650:CDS 50.0%
GCTGGCAAGCAACTTGAAGA+TGG - tig0020442:104989-105008 Msa1381650:CDS 50.0%
!!! CATTTGGTTTTGCGGCTTCG+TGG - tig0020442:105055-105074 Msa1381650:CDS 50.0%
! ATTAGTCTCTGCTGGTCTGG+AGG + tig0020442:105193-105212 None:intergenic 50.0%
!!! TTGGTTTTGAGGCTTCGTGG+TGG - tig0020442:105286-105305 Msa1381650:CDS 50.0%
ATCAGAGCTTTCCACCTCCA+AGG + tig0020442:105353-105372 None:intergenic 50.0%
ATAAGCCTCTGCTGATCTGG+GGG + tig0020442:104965-104984 None:intergenic 50.0%
! TTTTGCTGGCAAGCAGTTGG+AGG - tig0020442:105441-105460 Msa1381650:CDS 50.0%
CATCTTGTTCTTCGTCTCCG+TGG - tig0020442:105511-105530 Msa1381650:CDS 50.0%
GTATCCCTCCTGATCAGCAG+AGG - tig0020442:104501-104520 Msa1381650:CDS 55.0%
GCTGGGAAACAGCTTGAGGA+TGG - tig0020442:104533-104552 Msa1381650:CDS 55.0%
GGCCAAGATCCAGGACAAAG+AGG - tig0020442:104706-104725 Msa1381650:CDS 55.0%
GTGGGATACCCTCTTTGTCC+TGG + tig0020442:104718-104737 None:intergenic 55.0%
GTATCCCACCTGATCAGCAG+AGG - tig0020442:104729-104748 Msa1381650:CDS 55.0%
GTATCCCTCCAGATCAGCAG+AGG - tig0020442:104957-104976 Msa1381650:CDS 55.0%
!!! TTGGTTTTGCGGCTTCGTGG+TGG - tig0020442:105058-105077 Msa1381650:CDS 55.0%
GCCGGAAAGCAATTGGAGGA+TGG - tig0020442:105217-105236 Msa1381650:CDS 55.0%
GTATTCCCCCAGATCAGCAG+AGG - tig0020442:105413-105432 Msa1381650:CDS 55.0%
GTTGGAGGATGGTCGTACTC+TGG - tig0020442:105456-105475 Msa1381650:CDS 55.0%
CTTGTTCTTCGTCTCCGTGG+TGG - tig0020442:105514-105533 Msa1381650:CDS 55.0%
GTATCCCTCCTGATCAGCAG+AGG - tig0020442:104501-104520 Msa1381650:CDS 55.0%
GCTGGGAAACAGCTTGAGGA+TGG - tig0020442:104533-104552 Msa1381650:CDS 55.0%
GGCCAAGATCCAGGACAAAG+AGG - tig0020442:104706-104725 Msa1381650:CDS 55.0%
GTGGGATACCCTCTTTGTCC+TGG + tig0020442:104718-104737 None:intergenic 55.0%
GTATCCCACCTGATCAGCAG+AGG - tig0020442:104729-104748 Msa1381650:CDS 55.0%
GTATCCCTCCAGATCAGCAG+AGG - tig0020442:104957-104976 Msa1381650:CDS 55.0%
!!! TTGGTTTTGCGGCTTCGTGG+TGG - tig0020442:105058-105077 Msa1381650:CDS 55.0%
GCCGGAAAGCAATTGGAGGA+TGG - tig0020442:105217-105236 Msa1381650:CDS 55.0%
GTATTCCCCCAGATCAGCAG+AGG - tig0020442:105413-105432 Msa1381650:CDS 55.0%
GTTGGAGGATGGTCGTACTC+TGG - tig0020442:105456-105475 Msa1381650:CDS 55.0%
CTTGTTCTTCGTCTCCGTGG+TGG - tig0020442:105514-105533 Msa1381650:CDS 55.0%
GCTGGCAAGCAGTTGGAGGA+TGG - tig0020442:105445-105464 Msa1381650:CDS 60.0%
GCTGGCAAGCAGTTGGAGGA+TGG - tig0020442:105445-105464 Msa1381650:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0020442 gene 104398 105543 104398 ID=Msa1381650;Name=Msa1381650
tig0020442 mRNA 104398 105543 104398 ID=Msa1381650-mRNA-1;Parent=Msa1381650;Name=Msa1381650-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|381
tig0020442 exon 104398 105543 104398 ID=Msa1381650-mRNA-1:exon:7661;Parent=Msa1381650-mRNA-1
tig0020442 CDS 104398 105543 104398 ID=Msa1381650-mRNA-1:cds;Parent=Msa1381650-mRNA-1
Gene Sequence

>Msa1381650

ATGCAAATCTTTGTGAAAACATTGACTGGCAAAACCATCACCCTTGAGGTGGAATCATCAGATACAATTGATAATGTCAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCTGATCAGCAGAGGCTTATCTTTGCTGGGAAACAGCTTGAGGATGGAAGAACCCTAGCAGATTATAACATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAATGCAGATATTCGTCAAGACTTTGACCGGAAAAACCATCACCCTAGAGGTTGAATCCTCGGATACCATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGTATCCCACCTGATCAGCAGAGGCTTATCTTTGCAGGGAAACAACTAGAAGATGGAAGGACCCTAGCTGATTATAACATCCAGAAGGAATCCACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAATGCAGATTTTTGTGAAGACTTTGACGGGAAAGACTATTACTTTGGAGGTGGAGAGTTCAGATACTGTTGATAATGTGAAAGCTAAGATTCAAGATAAGGAGGGTATCCCTCCAGATCAGCAGAGGCTTATCTTTGCTGGCAAGCAACTTGAAGATGGAAGGACCCTTGCTGATTATAATATCCAAAAGGAATCCACTCTTCATTTGGTTTTGCGGCTTCGTGGTGGTATGCAAATTTTTGTGAAGACCCTTACCGGAAAAACTATTACTTTGGAGGTTGAGAGTTCTGATACAATTGATAATGTCAAGGCTAAAATTCAGGATAAAGAGGGCATTCCTCCAGACCAGCAGAGACTAATTTTTGCCGGAAAGCAATTGGAGGATGGTCGTACTTTGGCTGATTATAATATCCAGAAGGAATCTACTTTGCATTTGGTTTTGAGGCTTCGTGGTGGCATGCAAATATTTGTGAAGACACTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCTGATACTATTGATAATGTGAAAGCAAAGATACAAGATAAGGAGGGTATTCCCCCAGATCAGCAGAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTCTGGCAGATTACAATATTCAGAAAGAATCTACCCTTCATCTTGTTCTTCGTCTCCGTGGTGGCTTCTAA

Protein sequence

>Msa1381650

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTVDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*