AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1130560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130560 MtrunA17_Chr7g0275771 97.561 369 9 0 53 421 268 636 0.0 768
Msa1130560 MtrunA17_Chr1g0147021 52.957 372 130 5 53 421 1001 1330 1.09e-122 391
Msa1130560 MtrunA17_Chr1g0211711 49.737 380 154 10 53 421 475 828 1.01e-104 333
Msa1130560 MtrunA17_Chr1g0183311 47.200 375 175 8 53 421 276 633 2.14e-103 327
Msa1130560 MtrunA17_Chr1g0211661 49.462 372 170 7 53 421 357 713 4.42e-97 310
Msa1130560 MtrunA17_Chr1g0211691 46.966 379 169 10 53 421 477 833 2.11e-96 310
Msa1130560 MtrunA17_Chr5g0426961 46.631 371 182 6 53 421 273 629 2.73e-93 299
Msa1130560 MtrunA17_Chr1g0192011 40.106 379 182 6 43 421 383 716 1.47e-86 284
Msa1130560 MtrunA17_Chr4g0075261 42.049 371 165 8 53 421 296 618 5.65e-85 277
Msa1130560 MtrunA17_Chr5g0420361 42.667 375 187 12 53 421 208 560 4.03e-82 269
Msa1130560 MtrunA17_Chr2g0289121 40.108 369 176 6 53 421 285 608 9.56e-82 268
Msa1130560 MtrunA17_Chr5g0448301 45.187 374 164 10 53 421 172 509 1.49e-81 263
Msa1130560 MtrunA17_Chr6g0472441 40.526 380 189 12 53 425 151 500 2.39e-75 249
Msa1130560 MtrunA17_Chr2g0289031 56.522 184 80 0 238 421 9 192 7.33e-65 213
Msa1130560 MtrunA17_Chr8g0361381 51.852 189 85 2 233 421 26 208 8.62e-63 202
Msa1130560 MtrunA17_Chr4g0048531 43.431 274 149 3 149 421 722 990 7.06e-62 217
Msa1130560 MtrunA17_Chr2g0281051 36.979 384 191 12 55 421 341 690 6.68e-60 210
Msa1130560 MtrunA17_Chr7g0231061 54.331 127 58 0 295 421 7 133 9.13e-38 136
Msa1130560 MtrunA17_Chr2g0289091 58.559 111 46 0 311 421 21 131 5.08e-37 140
Msa1130560 MtrunA17_Chr8g0364421 34.764 233 111 7 53 285 27 218 4.40e-32 122
Msa1130560 MtrunA17_Chr8g0340381 60.870 92 32 2 334 425 36 123 1.67e-28 110
Msa1130560 MtrunA17_Chr2g0289101 28.767 146 88 4 53 198 8 137 2.99e-14 70.5
Msa1130560 MtrunA17_Chr2g0289041 35.398 113 54 5 53 164 110 204 6.28e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130560 AT4G00990.3 58.182 385 126 7 40 421 201 553 7.28e-150 444
Msa1130560 AT4G00990.2 58.182 385 126 7 40 421 201 553 7.96e-150 444
Msa1130560 AT4G00990.1 58.182 385 126 7 40 421 201 553 1.41e-149 446
Msa1130560 AT1G11950.2 48.649 370 162 7 53 421 323 665 3.06e-107 335
Msa1130560 AT1G11950.1 48.787 371 160 8 53 421 323 665 8.89e-107 335
Msa1130560 AT1G11950.3 48.787 371 160 8 53 421 323 665 8.89e-107 335
Msa1130560 AT1G62310.1 47.709 371 166 8 53 421 339 683 7.38e-106 333
Msa1130560 AT3G07610.2 48.239 284 133 4 146 425 417 690 4.54e-81 265
Msa1130560 AT3G07610.1 48.929 280 129 4 146 421 417 686 2.25e-79 265
Msa1130560 AT3G07610.3 48.746 279 129 4 146 420 417 685 1.54e-78 263
Msa1130560 AT1G09060.2 36.559 372 183 8 55 421 335 658 3.58e-70 239
Msa1130560 AT1G09060.1 36.559 372 183 8 55 421 335 658 3.58e-70 239
Msa1130560 AT1G09060.4 36.559 372 183 8 55 421 349 672 4.24e-70 239
Msa1130560 AT1G09060.3 36.559 372 183 8 55 421 349 672 4.24e-70 239
Msa1130560 AT4G21430.1 35.055 271 160 5 156 421 412 671 3.23e-42 159

Find 197 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCAATTTCAACATTTC+TGG 0.120735 7_3:+82723609 None:intergenic
TAGAGGGACTAAACGAAATT+TGG 0.136911 7_3:-82721793 Msa1130560:three_prime_UTR
CACTCTTCTGCCTCACAATT+TGG 0.152053 7_3:-82721591 Msa1130560:three_prime_UTR
TCCATAAGCAATATATGTTT+TGG 0.206014 7_3:+82723431 None:intergenic
GACGCATTTACAAAGCTAAT+TGG 0.212539 7_3:-82724173 Msa1130560:CDS
CCTTGCTGCACTTCCGTATA+TGG 0.220636 7_3:-82723532 Msa1130560:CDS
TCACTATTAGCTTTCCATTC+TGG 0.221053 7_3:+82724258 None:intergenic
CATCACATTGTCCAATTCTT+TGG 0.222867 7_3:+82722865 None:intergenic
ACCAGCATCTTCCATTTAAA+AGG 0.223935 7_3:+82722635 None:intergenic
AAATTTAAAAGACCTGATTT+TGG 0.227869 7_3:+82723498 None:intergenic
TACCACACAATTATGATCTT+TGG 0.236760 7_3:+82722309 None:intergenic
CATGAAATTGTAGCTCATTT+AGG 0.236993 7_3:+82722888 None:intergenic
CCCAAAACATATATTGCTTA+TGG 0.252702 7_3:-82723432 Msa1130560:CDS
CCTAATGGATGCTTGGATTC+TGG 0.266923 7_3:-82722537 Msa1130560:three_prime_UTR
GAATGAGGTGTGCAGATTAA+AGG 0.276568 7_3:-82722726 Msa1130560:three_prime_UTR
TTCTATGCCTTTGGTTTGTC+CGG 0.280508 7_3:-82724691 None:intergenic
CTGAATGCCTACATTATAAA+TGG 0.280883 7_3:-82724558 Msa1130560:CDS
ATACACACAAGTTTACTTAA+AGG 0.283933 7_3:+82722165 None:intergenic
TTTCTTGAATTGATATTTAG+AGG 0.296637 7_3:-82722793 Msa1130560:three_prime_UTR
GGTTTCATCTTCTATGCCTT+TGG 0.300132 7_3:-82724700 None:intergenic
CACTATTAGCTTTCCATTCT+GGG 0.308619 7_3:+82724259 None:intergenic
ATATTTAGAGGTAGTGTATA+TGG 0.319006 7_3:-82722781 Msa1130560:three_prime_UTR
TGTTAACTCTCCAGTTCATA+TGG 0.325715 7_3:-82722107 Msa1130560:three_prime_UTR
CCAACTTAGACCAGATGTTT+TGG 0.327801 7_3:+82723885 None:intergenic
GCTGATGGTTCTTGTGTTGT+TGG 0.329327 7_3:-82722427 Msa1130560:three_prime_UTR
ACAATTTCATGCCAAAGAAT+TGG 0.333187 7_3:-82722876 Msa1130560:three_prime_UTR
ATAATGTAGGCATTCAGTTT+AGG 0.335215 7_3:+82724564 None:intergenic
CACCTCATTCTCTCCATTTG+TGG 0.337561 7_3:+82722739 None:intergenic
TGGCTCGTTGAAACCAGATT+TGG 0.338002 7_3:-82723457 Msa1130560:CDS
CTCAGAAAGGGCTGCCAACC+TGG 0.342470 7_3:-82724441 Msa1130560:CDS
AATTGCAATACATCCATATA+TGG 0.343840 7_3:-82724528 Msa1130560:CDS
CCGCAACCTCCACGCTGCTT+TGG 0.346427 7_3:+82724216 None:intergenic
CATTCAGTTTAGGATCAAAT+AGG 0.347182 7_3:+82724574 None:intergenic
GCCTCTGGTATTATGCCTAA+TGG 0.348626 7_3:-82722552 Msa1130560:three_prime_UTR
AATGCTGCCGTCCTGACTTC+AGG 0.358100 7_3:+82724033 None:intergenic
AAATGTTGAAATTGAAAGAT+TGG 0.360364 7_3:-82723605 Msa1130560:CDS
AGAGGGACTAAACGAAATTT+GGG 0.360449 7_3:-82721792 Msa1130560:three_prime_UTR
GCTACGGTAAAATCCATATA+TGG 0.365215 7_3:+82724515 None:intergenic
TTCCTCTTTCAACTTCGCTT+TGG 0.365483 7_3:+82723822 None:intergenic
CGCTGATAAATCTAATAATC+TGG 0.366014 7_3:-82723275 Msa1130560:three_prime_UTR
AGTCAGGACGGCAGCATTCC+GGG 0.366559 7_3:-82724028 Msa1130560:CDS
CACAACAAGGCTTTGTCACT+TGG 0.366672 7_3:-82724628 Msa1130560:CDS
TGCCAGCTAAACTTGTTAGA+AGG 0.368652 7_3:-82724066 Msa1130560:CDS
GGATCAGTGTAGTCCATATA+CGG 0.368658 7_3:+82723519 None:intergenic
ATGAAATGCTGGGACAAGTA+TGG 0.369813 7_3:+82723014 None:intergenic
ACCTCATTCTCTCCATTTGT+GGG 0.374017 7_3:+82722740 None:intergenic
AGTCACGACGCAAAACATTT+GGG 0.379238 7_3:-82721839 Msa1130560:three_prime_UTR
AAGTCACGACGCAAAACATT+TGG 0.379376 7_3:-82721840 Msa1130560:three_prime_UTR
TCATATGAGCAACCGGTGTT+GGG 0.387584 7_3:+82724489 None:intergenic
TGGAGGGCCCTCAGAGAAAC+AGG 0.401355 7_3:-82723847 Msa1130560:CDS
TGTGGTTGTGAGAAATGTTT+TGG 0.402232 7_3:-82723908 Msa1130560:CDS
CTCCCTTCATCCAGTGCCTC+TGG 0.403927 7_3:+82723935 None:intergenic
CAACCTCCACGCTGCTTTGG+AGG 0.406325 7_3:+82724219 None:intergenic
TCAGATATGTCAAGGGCGTT+TGG 0.411554 7_3:+82723976 None:intergenic
CATGTCCGGTGTCACTCATA+TGG 0.413293 7_3:-82722607 Msa1130560:three_prime_UTR
CCAAAACATCTGGTCTAAGT+TGG 0.422615 7_3:-82723885 Msa1130560:CDS
ATCATATGAGCAACCGGTGT+TGG 0.424828 7_3:+82724488 None:intergenic
GGCTCGTTGAAACCAGATTT+GGG 0.425618 7_3:-82723456 Msa1130560:CDS
TTCTGTATATAAATGTCAAA+GGG 0.425677 7_3:+82721483 None:intergenic
TTTAAAAGGAAGAGAGCATC+AGG 0.428506 7_3:+82722649 None:intergenic
GCAATATAATAAATACTAGA+AGG 0.428813 7_3:+82722454 None:intergenic
TATGATCTTTGGTAAGCTTA+CGG 0.434111 7_3:+82722320 None:intergenic
TTGATTGCTTGGATTGGTGT+GGG 0.436266 7_3:-82723780 Msa1130560:CDS
AACCCCTTTCCCATATGAAC+TGG 0.443211 7_3:+82722097 None:intergenic
AATCAATTACTTTCAACAAA+AGG 0.445010 7_3:+82723095 None:intergenic
TTCTGTGACCAAACTGCACT+TGG 0.447540 7_3:-82723382 Msa1130560:CDS
TTATTCTTGTCATTATTTGT+TGG 0.448416 7_3:+82723187 None:intergenic
ACGCATTTACAAAGCTAATT+GGG 0.448708 7_3:-82724172 Msa1130560:CDS
TCTCCAGTTCATATGGGAAA+GGG 0.453870 7_3:-82722100 Msa1130560:three_prime_UTR
TTGGTTTGTCCGGGACTTTG+TGG 0.454078 7_3:-82724681 Msa1130560:CDS
TGTTAAGGCTGTTGATTGCT+TGG 0.454355 7_3:-82723791 Msa1130560:CDS
TTCTAACAAGTTTAGCTGGC+AGG 0.459337 7_3:+82724068 None:intergenic
CAACCTGGAGGCATGGAGGC+TGG 0.460136 7_3:-82724426 Msa1130560:CDS
GTTGATTGCTTGGATTGGTG+TGG 0.461006 7_3:-82723781 Msa1130560:CDS
TTCCTTCTAACAAGTTTAGC+TGG 0.463979 7_3:+82724064 None:intergenic
GCATAATACCAGAGGCAGTA+AGG 0.464570 7_3:+82722559 None:intergenic
GTCACTGCCATTTATAATGT+AGG 0.466830 7_3:+82724551 None:intergenic
TTTGGAACCTGTTTCTCTGA+GGG 0.469787 7_3:+82723840 None:intergenic
AGACACATCCAAGTGCAGTT+TGG 0.473593 7_3:+82723374 None:intergenic
AGATTTATCAGCGATTAGTA+AGG 0.474185 7_3:+82723285 None:intergenic
CTTCCAGAGGCACTGGATGA+AGG 0.474463 7_3:-82723938 Msa1130560:CDS
ACATGTAGAAACCTGCTGTT+GGG 0.475017 7_3:-82723311 Msa1130560:exon
AGGCTGTTGATTGCTTGGAT+TGG 0.480261 7_3:-82723786 Msa1130560:CDS
GACTACACTGATCCAAAATC+AGG 0.480455 7_3:-82723510 Msa1130560:CDS
CAAAACATCTGGTCTAAGTT+GGG 0.481497 7_3:-82723884 Msa1130560:CDS
CCAAAGCAGCGTGGAGGTTG+CGG 0.481572 7_3:-82724216 Msa1130560:CDS
TTTGCTAGTAAACTTCCTGC+TGG 0.483596 7_3:-82723477 Msa1130560:CDS
AATTGCAATAAATCAGAAAA+CGG 0.483960 7_3:-82723164 Msa1130560:three_prime_UTR
TCTATGCCTTTGGTTTGTCC+GGG 0.484589 7_3:-82724690 Msa1130560:CDS
TCTCGATCCCTTACTGCCTC+TGG 0.484948 7_3:-82722567 Msa1130560:three_prime_UTR
TGTTCTCTCCCTTCCCAGAA+TGG 0.488292 7_3:-82724272 Msa1130560:CDS
AACCGGTGTTGGGGCAGCTA+CGG 0.490680 7_3:+82724499 None:intergenic
GTTAACTCTCCAGTTCATAT+GGG 0.490838 7_3:-82722106 Msa1130560:three_prime_UTR
AGAGGAAACACAAAGTGTTA+AGG 0.491693 7_3:-82723806 Msa1130560:CDS
AACAAGGCTTTGTCACTTGG+AGG 0.492837 7_3:-82724625 Msa1130560:CDS
ACAGAGATCATATGAGCAAC+CGG 0.493700 7_3:+82724482 None:intergenic
TATTATGCCTAATGGATGCT+TGG 0.495478 7_3:-82722544 Msa1130560:three_prime_UTR
GAAATCATAAGATGAAATGC+TGG 0.496691 7_3:+82723003 None:intergenic
GGGCTGCCAACCTGGAGGCA+TGG 0.498628 7_3:-82724433 Msa1130560:CDS
AAATTACACACCACTGGATG+TGG 0.499086 7_3:-82724112 Msa1130560:CDS
GATGCAAATTCAAATACATC+AGG 0.499288 7_3:-82722846 Msa1130560:three_prime_UTR
TCAAGCACTTCCAGAGGCAC+TGG 0.499542 7_3:-82723945 Msa1130560:CDS
TACATCGTAAAAGATATGAC+TGG 0.502695 7_3:-82724338 Msa1130560:CDS
GAAGAGCGCTTGCCTAGGCA+TGG 0.506411 7_3:-82723564 Msa1130560:CDS
ATCTTTGGTAAGCTTACGGA+TGG 0.508515 7_3:+82722324 None:intergenic
CTTTGGAACCTGTTTCTCTG+AGG 0.509010 7_3:+82723839 None:intergenic
TATTATATTGCAGTTGCTGA+TGG 0.512107 7_3:-82722442 Msa1130560:three_prime_UTR
TACATGTAGAAACCTGCTGT+TGG 0.516556 7_3:-82723312 Msa1130560:exon
TCAAATAGGATATTATGAAA+AGG 0.517375 7_3:+82724588 None:intergenic
ATGAAAAGGTAAAACAATCA+AGG 0.518521 7_3:+82724602 None:intergenic
TTTCTGTATATAAATGTCAA+AGG 0.519690 7_3:+82721482 None:intergenic
TTAGCTTTCCATTCTGGGAA+GGG 0.520236 7_3:+82724264 None:intergenic
CCACGCTGCTTTGGAGGACA+TGG 0.521105 7_3:+82724225 None:intergenic
TAGTAAGGACTCCCAACAGC+AGG 0.521995 7_3:+82723300 None:intergenic
TAAGCTTACGGATGGAGATA+AGG 0.522114 7_3:+82722332 None:intergenic
TGGCTTTAGCTCAAATGTCT+CGG 0.522919 7_3:-82721571 Msa1130560:three_prime_UTR
GTTGTGAAATATTTATGAGA+AGG 0.522927 7_3:+82724645 None:intergenic
TGTCTGAGACGTCGTGAGAC+TGG 0.524468 7_3:+82722502 None:intergenic
TGCTGTCAAGAGCTCAGAAA+GGG 0.524593 7_3:-82724453 Msa1130560:CDS
GAGTGCATATGACCCACAAA+TGG 0.525600 7_3:-82722752 Msa1130560:three_prime_UTR
CTCTCCAGTTCATATGGGAA+AGG 0.526718 7_3:-82722101 Msa1130560:three_prime_UTR
CATAATACCAGAGGCAGTAA+GGG 0.534819 7_3:+82722560 None:intergenic
ATGTCCGGTGTCACTCATAT+GGG 0.534934 7_3:-82722606 Msa1130560:three_prime_UTR
CACTAGAAATTACACACCAC+TGG 0.535964 7_3:-82724118 Msa1130560:CDS
TTCCAGAGGCACTGGATGAA+GGG 0.536895 7_3:-82723937 Msa1130560:CDS
CCAGAATCCAAGCATCCATT+AGG 0.537292 7_3:+82722537 None:intergenic
GGACTTTGTGGAAAAGAATA+CGG 0.540970 7_3:-82724669 Msa1130560:CDS
ATTAGCTTTCCATTCTGGGA+AGG 0.541639 7_3:+82724263 None:intergenic
GTCAAGACACATTTGTTGAA+AGG 0.543319 7_3:+82723122 None:intergenic
CTCATAAATATTTCACAACA+AGG 0.543675 7_3:-82724641 Msa1130560:CDS
GTTCCAGCCTCCATGCCTCC+AGG 0.544115 7_3:+82724423 None:intergenic
TCTTCAAAAGAGGTGGATGA+AGG 0.544342 7_3:+82723582 None:intergenic
TCTGGTTTCAACGAGCCAGC+AGG 0.545236 7_3:+82723462 None:intergenic
GTTGGGAACCAATGGTTATG+TGG 0.549955 7_3:-82723867 Msa1130560:CDS
GATGCGGTAATTTCTGCTCT+AGG 0.550602 7_3:-82723351 Msa1130560:CDS
CACAAGTTTACTTAAAGGCA+AGG 0.552252 7_3:+82722170 None:intergenic
TGGTCTAAGTTGGGAACCAA+TGG 0.552684 7_3:-82723875 Msa1130560:CDS
AAATCATAAGATGAAATGCT+GGG 0.552758 7_3:+82723004 None:intergenic
GTCGAATGCATAAAGATAAG+TGG 0.555220 7_3:-82723632 Msa1130560:CDS
TAAAAGGAAGAGAGCATCAG+GGG 0.555627 7_3:+82722651 None:intergenic
AAAACATTTCTCACAACCAC+AGG 0.556803 7_3:+82723910 None:intergenic
AGATAAGGTTACGAGACTCT+TGG 0.562330 7_3:+82722347 None:intergenic
GAATGGAAAGCTAATAGTGA+TGG 0.562940 7_3:-82724255 Msa1130560:CDS
CTCCAGTTCATATGGGAAAG+GGG 0.570034 7_3:-82722099 Msa1130560:three_prime_UTR
TACCGTAGCTGCCCCAACAC+CGG 0.571816 7_3:-82724501 Msa1130560:CDS
GTGCTGTCAAGAGCTCAGAA+AGG 0.573335 7_3:-82724454 Msa1130560:CDS
AGGCAAGCGCTCTTCAAAAG+AGG 0.574024 7_3:+82723572 None:intergenic
ACATCTAGCCGTCGGAAACA+AGG 0.575584 7_3:+82722382 None:intergenic
AGTTATCTTTACTGTCATCC+CGG 0.575632 7_3:+82724010 None:intergenic
AGGGCCCTCCACATAACCAT+TGG 0.576182 7_3:+82723859 None:intergenic
TGAGTTGTTAAGGAACATAG+AGG 0.578351 7_3:-82721687 Msa1130560:intron
CATATGAGCAACCGGTGTTG+GGG 0.581272 7_3:+82724490 None:intergenic
TTCCAAAGCGAAGTTGAAAG+AGG 0.582695 7_3:-82723824 Msa1130560:CDS
ACCCACAAATGGAGAGAATG+AGG 0.583049 7_3:-82722741 Msa1130560:three_prime_UTR
GCCTGAGAATGAAAACTAGT+AGG 0.583092 7_3:+82724300 None:intergenic
AGGAATTCAGCACCATGCCT+AGG 0.583338 7_3:+82723552 None:intergenic
GATGCTGGTGAGATCATGTC+CGG 0.583706 7_3:-82722621 Msa1130560:three_prime_UTR
AGTTGTTGTCTTCCACACTT+CGG 0.586713 7_3:-82721627 Msa1130560:three_prime_UTR
ATTACTTTCAACAAAAGGAA+CGG 0.594367 7_3:+82723100 None:intergenic
TCTCATCATCAGATATGTCA+AGG 0.595439 7_3:+82723968 None:intergenic
GTCGTGACGGAAAATATTTG+AGG 0.600845 7_3:+82722200 None:intergenic
GGAACCAATGGTTATGTGGA+GGG 0.602890 7_3:-82723863 Msa1130560:CDS
CTGCCAACCTGGAGGCATGG+AGG 0.608369 7_3:-82724430 Msa1130560:CDS
CAAGCGCTCTTCAAAAGAGG+TGG 0.609569 7_3:+82723575 None:intergenic
AATTTCAACCTTGTTTCCGA+CGG 0.610631 7_3:-82722390 Msa1130560:three_prime_UTR
AAAACTACTAAATAATGCTG+AGG 0.613650 7_3:-82724145 Msa1130560:CDS
GTTTGGTCACAGAATCTCCT+CGG 0.620832 7_3:+82723391 None:intergenic
ACATCGTAAAAGATATGACT+GGG 0.621776 7_3:-82724337 Msa1130560:CDS
TTCTACATGTAAAGAACACA+AGG 0.622174 7_3:+82723324 None:intergenic
GTCACGACGCAAAACATTTG+GGG 0.622188 7_3:-82721838 Msa1130560:three_prime_UTR
TGATTGCTTGGATTGGTGTG+GGG 0.624612 7_3:-82723779 Msa1130560:intron
GGGAACCAATGGTTATGTGG+AGG 0.624618 7_3:-82723864 Msa1130560:CDS
TACCAAAGATCATAATTGTG+TGG 0.629980 7_3:-82722311 Msa1130560:three_prime_UTR
GCAAGGACCAAAAGTCGTGA+CGG 0.630979 7_3:+82722187 None:intergenic
GTCACCCATATGAGTGACAC+CGG 0.633922 7_3:+82722602 None:intergenic
TGTGTAGCACATCTAGCCGT+CGG 0.638083 7_3:+82722374 None:intergenic
CAAAGTCCCGGACAAACCAA+AGG 0.639850 7_3:+82724684 None:intergenic
TGAGCTAAAGCCAAATTGTG+AGG 0.642278 7_3:+82721581 None:intergenic
CTCATCATCAGATATGTCAA+GGG 0.643129 7_3:+82723969 None:intergenic
CTGAGACGTCGTGAGACTGG+TGG 0.645259 7_3:+82722505 None:intergenic
TCCATTAGGCATAATACCAG+AGG 0.648409 7_3:+82722551 None:intergenic
TGCATCTGGGAAGGCCACTG+TGG 0.653021 7_3:+82722965 None:intergenic
AGAAAGGGCTGCCAACCTGG+AGG 0.659756 7_3:-82724438 Msa1130560:CDS
AATCAATCCTGAAGTCAGGA+CGG 0.661137 7_3:-82724040 Msa1130560:CDS
TCTGTATATAAATGTCAAAG+GGG 0.662399 7_3:+82721484 None:intergenic
CCATATACGGAAGTGCAGCA+AGG 0.667187 7_3:+82723532 None:intergenic
AAAAGGAAGAGAGCATCAGG+GGG 0.668628 7_3:+82722652 None:intergenic
CTGTATATAAATGTCAAAGG+GGG 0.670905 7_3:+82721485 None:intergenic
TCAGTAATATCCACATCCAG+TGG 0.671163 7_3:+82724102 None:intergenic
CTGGATGAAGGGAGAACCTG+TGG 0.674541 7_3:-82723926 Msa1130560:CDS
TTAAAAGGAAGAGAGCATCA+GGG 0.675485 7_3:+82722650 None:intergenic
CTTTGACTAAGACCGAAGTG+TGG 0.691670 7_3:+82721615 None:intergenic
TGTCCTCCAAAGCAGCGTGG+AGG 0.692688 7_3:-82724222 Msa1130560:CDS
ATGAGATCAAGCACTTCCAG+AGG 0.695160 7_3:-82723951 Msa1130560:CDS
GCACTTGGATGTGTCTGATG+CGG 0.702546 7_3:-82723367 Msa1130560:CDS
CCATGTCCTCCAAAGCAGCG+TGG 0.720281 7_3:-82724225 Msa1130560:CDS
AAAGGAAGAGAGCATCAGGG+GGG 0.759786 7_3:+82722653 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTAACATCAAAT+TGG + chr7_3:82723368-82723387 None:intergenic 10.0%
!!! CTTTTTAATCCTTTTTTATT+TGG - chr7_3:82723139-82723158 Msa1130560:three_prime_UTR 15.0%
!! AAATTCATTCAAAAATATGA+AGG - chr7_3:82724287-82724306 Msa1130560:CDS 15.0%
!! AATTCATTCAAAAATATGAA+GGG - chr7_3:82724288-82724307 Msa1130560:CDS 15.0%
!! AAAAAAAAATTCGAAAAAAG+AGG + chr7_3:82724642-82724661 None:intergenic 15.0%
!! TCAAATAGGATATTATGAAA+AGG + chr7_3:82721598-82721617 None:intergenic 20.0%
!!! CATACTTCATTTTATTTACA+CGG - chr7_3:82722472-82722491 Msa1130560:three_prime_UTR 20.0%
!!! AATATACACCAATTTTTTCA+AGG - chr7_3:82722517-82722536 Msa1130560:three_prime_UTR 20.0%
!! AAATGTTGAAATTGAAAGAT+TGG - chr7_3:82722578-82722597 Msa1130560:three_prime_UTR 20.0%
!!! AAATTTAAAAGACCTGATTT+TGG + chr7_3:82722688-82722707 None:intergenic 20.0%
!! TTATTCTTGTCATTATTTGT+TGG + chr7_3:82722999-82723018 None:intergenic 20.0%
!! AATTGCAATAAATCAGAAAA+CGG - chr7_3:82723019-82723038 Msa1130560:three_prime_UTR 20.0%
!! AATCAATTACTTTCAACAAA+AGG + chr7_3:82723091-82723110 None:intergenic 20.0%
!!! TTGCTTAAGATATGATTTTT+AGG - chr7_3:82723109-82723128 Msa1130560:three_prime_UTR 20.0%
!!! TGCTTAAGATATGATTTTTA+GGG - chr7_3:82723110-82723129 Msa1130560:three_prime_UTR 20.0%
!! TTTCTTGAATTGATATTTAG+AGG - chr7_3:82723390-82723409 Msa1130560:CDS 20.0%
!! GCAATATAATAAATACTAGA+AGG + chr7_3:82723732-82723751 None:intergenic 20.0%
!!! ATAATTGTGTGGTAATTTTT+AGG - chr7_3:82723883-82723902 Msa1130560:CDS 20.0%
!!! TAATTGTGTGGTAATTTTTA+GGG - chr7_3:82723884-82723903 Msa1130560:CDS 20.0%
!!! CTAAATTTGAGATTTTTACA+AGG + chr7_3:82723927-82723946 None:intergenic 20.0%
!!! AAAAATATTTCAGCAAGTTT+TGG - chr7_3:82723959-82723978 Msa1130560:CDS 20.0%
!! TATAAAAATCTCTCTTATGA+AGG - chr7_3:82724130-82724149 Msa1130560:CDS 20.0%
!!! TAAAAAATTTCAGCAAGTTT+TGG + chr7_3:82724372-82724391 None:intergenic 20.0%
! GTTGTGAAATATTTATGAGA+AGG + chr7_3:82721541-82721560 None:intergenic 25.0%
! CTCATAAATATTTCACAACA+AGG - chr7_3:82721542-82721561 Msa1130560:three_prime_UTR 25.0%
! ATGAAAAGGTAAAACAATCA+AGG + chr7_3:82721584-82721603 None:intergenic 25.0%
! AATTGCAATACATCCATATA+TGG - chr7_3:82721655-82721674 Msa1130560:three_prime_UTR 25.0%
! AAAACTACTAAATAATGCTG+AGG - chr7_3:82722038-82722057 Msa1130560:three_prime_UTR 25.0%
! TCTTTCAATTTCAACATTTC+TGG + chr7_3:82722577-82722596 None:intergenic 25.0%
!! CCATAAGCAATATATGTTTT+GGG + chr7_3:82722754-82722773 None:intergenic 25.0%
!! TCCATAAGCAATATATGTTT+TGG + chr7_3:82722755-82722774 None:intergenic 25.0%
! ATTACTTTCAACAAAAGGAA+CGG + chr7_3:82723086-82723105 None:intergenic 25.0%
! AAATCATAAGATGAAATGCT+GGG + chr7_3:82723182-82723201 None:intergenic 25.0%
! ATATTTAGAGGTAGTGTATA+TGG - chr7_3:82723402-82723421 Msa1130560:CDS 25.0%
!!! AACTTGCTGAAATATTTTTG+AGG + chr7_3:82723958-82723977 None:intergenic 25.0%
! ATACACACAAGTTTACTTAA+AGG + chr7_3:82724021-82724040 None:intergenic 25.0%
!!! AACTTGCTGAAATTTTTTAG+AGG - chr7_3:82724373-82724392 Msa1130560:CDS 25.0%
!!! ACTTGCTGAAATTTTTTAGA+GGG - chr7_3:82724374-82724393 Msa1130560:CDS 25.0%
!!! ACGAAATTTGGGATTTTTAT+AGG - chr7_3:82724402-82724421 Msa1130560:CDS 25.0%
!!! CGAAATTTGGGATTTTTATA+GGG - chr7_3:82724403-82724422 Msa1130560:CDS 25.0%
! AAAAATTCGAAAAAAGAGGT+TGG + chr7_3:82724638-82724657 None:intergenic 25.0%
!!! TCAGATTTGGGATTTTTTTT+GGG + chr7_3:82724678-82724697 None:intergenic 25.0%
! CATTCAGTTTAGGATCAAAT+AGG + chr7_3:82721612-82721631 None:intergenic 30.0%
ATAATGTAGGCATTCAGTTT+AGG + chr7_3:82721622-82721641 None:intergenic 30.0%
CTGAATGCCTACATTATAAA+TGG - chr7_3:82721625-82721644 Msa1130560:three_prime_UTR 30.0%
ATCACGGTTCAACAAAAAAT+CGG - chr7_3:82721815-82721834 Msa1130560:three_prime_UTR 30.0%
TACATCGTAAAAGATATGAC+TGG - chr7_3:82721845-82721864 Msa1130560:three_prime_UTR 30.0%
ACATCGTAAAAGATATGACT+GGG - chr7_3:82721846-82721865 Msa1130560:three_prime_UTR 30.0%
ACGCATTTACAAAGCTAATT+GGG - chr7_3:82722011-82722030 Msa1130560:three_prime_UTR 30.0%
! TTACGTAGCCTTGAAAAAAT+TGG + chr7_3:82722528-82722547 None:intergenic 30.0%
!!! ATTTTTTCAAGGCTACGTAA+AGG - chr7_3:82722528-82722547 Msa1130560:three_prime_UTR 30.0%
!!! TTTTTTCAAGGCTACGTAAA+GGG - chr7_3:82722529-82722548 Msa1130560:three_prime_UTR 30.0%
CCCAAAACATATATTGCTTA+TGG - chr7_3:82722751-82722770 Msa1130560:three_prime_UTR 30.0%
TTCTACATGTAAAGAACACA+AGG + chr7_3:82722862-82722881 None:intergenic 30.0%
AGATTTATCAGCGATTAGTA+AGG + chr7_3:82722901-82722920 None:intergenic 30.0%
CGCTGATAAATCTAATAATC+TGG - chr7_3:82722908-82722927 Msa1130560:three_prime_UTR 30.0%
GGAAGCAAACCAAATAAAAA+AGG + chr7_3:82723151-82723170 None:intergenic 30.0%
GAAATCATAAGATGAAATGC+TGG + chr7_3:82723183-82723202 None:intergenic 30.0%
!!! TTCTTTTGTTTTGTGCATCT+GGG + chr7_3:82723234-82723253 None:intergenic 30.0%
!!! TTTCTTTTGTTTTGTGCATC+TGG + chr7_3:82723235-82723254 None:intergenic 30.0%
CATGAAATTGTAGCTCATTT+AGG + chr7_3:82723298-82723317 None:intergenic 30.0%
ACAATTTCATGCCAAAGAAT+TGG - chr7_3:82723307-82723326 Msa1130560:exon 30.0%
GATGCAAATTCAAATACATC+AGG - chr7_3:82723337-82723356 Msa1130560:CDS 30.0%
! TAACAACAGTTCTCTTTTGT+TGG - chr7_3:82723483-82723502 Msa1130560:CDS 30.0%
TATTATATTGCAGTTGCTGA+TGG - chr7_3:82723741-82723760 Msa1130560:intron 30.0%
TATGATCTTTGGTAAGCTTA+CGG + chr7_3:82723866-82723885 None:intergenic 30.0%
TACCAAAGATCATAATTGTG+TGG - chr7_3:82723872-82723891 Msa1130560:CDS 30.0%
TACCACACAATTATGATCTT+TGG + chr7_3:82723877-82723896 None:intergenic 30.0%
AACTGCGAAAAAAAATGTGA+AGG + chr7_3:82724044-82724063 None:intergenic 30.0%
! TCATTCCTATTGCACTTTTA+AGG - chr7_3:82724455-82724474 Msa1130560:CDS 30.0%
! AAGATCCTTAAAAGTGCAAT+AGG + chr7_3:82724463-82724482 None:intergenic 30.0%
!!! TCTTTTCTGGTTTTTCTAAC+TGG - chr7_3:82724528-82724547 Msa1130560:CDS 30.0%
!!! GTCAGATTTGGGATTTTTTT+TGG + chr7_3:82724679-82724698 None:intergenic 30.0%
! TATTCTTTTCCACAAAGTCC+CGG + chr7_3:82721514-82721533 None:intergenic 35.0%
GGACTTTGTGGAAAAGAATA+CGG - chr7_3:82721514-82721533 Msa1130560:three_prime_UTR 35.0%
! GTCACTGCCATTTATAATGT+AGG + chr7_3:82721635-82721654 None:intergenic 35.0%
GCTACGGTAAAATCCATATA+TGG + chr7_3:82721671-82721690 None:intergenic 35.0%
! GAAGAGATTTTTCACCATCA+CGG - chr7_3:82721799-82721818 Msa1130560:three_prime_UTR 35.0%
!!! GATTTTTTGTTGAACCGTGA+TGG + chr7_3:82721816-82721835 None:intergenic 35.0%
!!! ACCTACTAGTTTTCATTCTC+AGG - chr7_3:82721882-82721901 Msa1130560:three_prime_UTR 35.0%
!! CACTATTAGCTTTCCATTCT+GGG + chr7_3:82721927-82721946 None:intergenic 35.0%
!! TCACTATTAGCTTTCCATTC+TGG + chr7_3:82721928-82721947 None:intergenic 35.0%
GAATGGAAAGCTAATAGTGA+TGG - chr7_3:82721928-82721947 Msa1130560:three_prime_UTR 35.0%
GACGCATTTACAAAGCTAAT+TGG - chr7_3:82722010-82722029 Msa1130560:three_prime_UTR 35.0%
TTCCTTCTAACAAGTTTAGC+TGG + chr7_3:82722122-82722141 None:intergenic 35.0%
GAAAAATCAATCCTGAAGTC+AGG - chr7_3:82722139-82722158 Msa1130560:three_prime_UTR 35.0%
AGTTATCTTTACTGTCATCC+CGG + chr7_3:82722176-82722195 None:intergenic 35.0%
CTCATCATCAGATATGTCAA+GGG + chr7_3:82722217-82722236 None:intergenic 35.0%
TCTCATCATCAGATATGTCA+AGG + chr7_3:82722218-82722237 None:intergenic 35.0%
AAAACATTTCTCACAACCAC+AGG + chr7_3:82722276-82722295 None:intergenic 35.0%
! TGTGGTTGTGAGAAATGTTT+TGG - chr7_3:82722275-82722294 Msa1130560:three_prime_UTR 35.0%
!!! AATGTTTTGGCCAAAACATC+TGG - chr7_3:82722288-82722307 Msa1130560:three_prime_UTR 35.0%
CAAAACATCTGGTCTAAGTT+GGG - chr7_3:82722299-82722318 Msa1130560:three_prime_UTR 35.0%
! AGAGGAAACACAAAGTGTTA+AGG - chr7_3:82722377-82722396 Msa1130560:three_prime_UTR 35.0%
GTCGAATGCATAAAGATAAG+TGG - chr7_3:82722551-82722570 Msa1130560:three_prime_UTR 35.0%
!! TATGGATTTTCTGAAGAGCT+TGG - chr7_3:82722769-82722788 Msa1130560:three_prime_UTR 35.0%
! GTCAAGACACATTTGTTGAA+AGG + chr7_3:82723064-82723083 None:intergenic 35.0%
CATCACATTGTCCAATTCTT+TGG + chr7_3:82723321-82723340 None:intergenic 35.0%
!! TTAAAAGGAAGAGAGCATCA+GGG + chr7_3:82723536-82723555 None:intergenic 35.0%
!! TTTAAAAGGAAGAGAGCATC+AGG + chr7_3:82723537-82723556 None:intergenic 35.0%
! GATGCTCTCTTCCTTTTAAA+TGG - chr7_3:82723537-82723556 Msa1130560:CDS 35.0%
! TCCTTTTAAATGGAAGATGC+TGG - chr7_3:82723547-82723566 Msa1130560:CDS 35.0%
ACCAGCATCTTCCATTTAAA+AGG + chr7_3:82723551-82723570 None:intergenic 35.0%
! TATTATGCCTAATGGATGCT+TGG - chr7_3:82723639-82723658 Msa1130560:CDS 35.0%
! AATTTCAACCTTGTTTCCGA+CGG - chr7_3:82723793-82723812 Msa1130560:CDS 35.0%
! ATATTTTCCGTCACGACTTT+TGG - chr7_3:82723989-82724008 Msa1130560:CDS 35.0%
CACAAGTTTACTTAAAGGCA+AGG + chr7_3:82724016-82724035 None:intergenic 35.0%
TGTTAACTCTCCAGTTCATA+TGG - chr7_3:82724076-82724095 Msa1130560:CDS 35.0%
GTTAACTCTCCAGTTCATAT+GGG - chr7_3:82724077-82724096 Msa1130560:CDS 35.0%
TAGAGGGACTAAACGAAATT+TGG - chr7_3:82724390-82724409 Msa1130560:CDS 35.0%
AGAGGGACTAAACGAAATTT+GGG - chr7_3:82724391-82724410 Msa1130560:CDS 35.0%
TGAGTTGTTAAGGAACATAG+AGG - chr7_3:82724496-82724515 Msa1130560:CDS 35.0%
!!! TGGGATTTTTTTTGGGAACA+GGG + chr7_3:82724671-82724690 None:intergenic 35.0%
!!! TTGGGATTTTTTTTGGGAAC+AGG + chr7_3:82724672-82724691 None:intergenic 35.0%
ACAGAGATCATATGAGCAAC+CGG + chr7_3:82721704-82721723 None:intergenic 40.0%
GCCTGAGAATGAAAACTAGT+AGG + chr7_3:82721886-82721905 None:intergenic 40.0%
! TTAGCTTTCCATTCTGGGAA+GGG + chr7_3:82721922-82721941 None:intergenic 40.0%
!! ATTAGCTTTCCATTCTGGGA+AGG + chr7_3:82721923-82721942 None:intergenic 40.0%
CACTAGAAATTACACACCAC+TGG - chr7_3:82722065-82722084 Msa1130560:three_prime_UTR 40.0%
AAATTACACACCACTGGATG+TGG - chr7_3:82722071-82722090 Msa1130560:three_prime_UTR 40.0%
TCAGTAATATCCACATCCAG+TGG + chr7_3:82722084-82722103 None:intergenic 40.0%
TTCTAACAAGTTTAGCTGGC+AGG + chr7_3:82722118-82722137 None:intergenic 40.0%
!! TGCCAGCTAAACTTGTTAGA+AGG - chr7_3:82722117-82722136 Msa1130560:three_prime_UTR 40.0%
AATCAATCCTGAAGTCAGGA+CGG - chr7_3:82722143-82722162 Msa1130560:three_prime_UTR 40.0%
! CCAACTTAGACCAGATGTTT+TGG + chr7_3:82722301-82722320 None:intergenic 40.0%
CCAAAACATCTGGTCTAAGT+TGG - chr7_3:82722298-82722317 Msa1130560:three_prime_UTR 40.0%
! TTTGGAACCTGTTTCTCTGA+GGG + chr7_3:82722346-82722365 None:intergenic 40.0%
TTCCAAAGCGAAGTTGAAAG+AGG - chr7_3:82722359-82722378 Msa1130560:three_prime_UTR 40.0%
TTCCTCTTTCAACTTCGCTT+TGG + chr7_3:82722364-82722383 None:intergenic 40.0%
! TGTTAAGGCTGTTGATTGCT+TGG - chr7_3:82722392-82722411 Msa1130560:three_prime_UTR 40.0%
!! TTGATTGCTTGGATTGGTGT+GGG - chr7_3:82722403-82722422 Msa1130560:three_prime_UTR 40.0%
TCTTCAAAAGAGGTGGATGA+AGG + chr7_3:82722604-82722623 None:intergenic 40.0%
GGATCAGTGTAGTCCATATA+CGG + chr7_3:82722667-82722686 None:intergenic 40.0%
GACTACACTGATCCAAAATC+AGG - chr7_3:82722673-82722692 Msa1130560:three_prime_UTR 40.0%
TTTGCTAGTAAACTTCCTGC+TGG - chr7_3:82722706-82722725 Msa1130560:three_prime_UTR 40.0%
!! TATGTTTTGGGTCCCAAATC+TGG + chr7_3:82722742-82722761 None:intergenic 40.0%
TACATGTAGAAACCTGCTGT+TGG - chr7_3:82722871-82722890 Msa1130560:three_prime_UTR 40.0%
ACATGTAGAAACCTGCTGTT+GGG - chr7_3:82722872-82722891 Msa1130560:three_prime_UTR 40.0%
ATGAAATGCTGGGACAAGTA+TGG + chr7_3:82723172-82723191 None:intergenic 40.0%
!! AGCATTTTTGAAAGCCACAG+TGG - chr7_3:82723204-82723223 Msa1130560:three_prime_UTR 40.0%
!!! TTTGTTTTGTGCATCTGGGA+AGG + chr7_3:82723230-82723249 None:intergenic 40.0%
ACCTCATTCTCTCCATTTGT+GGG + chr7_3:82723446-82723465 None:intergenic 40.0%
GAATGAGGTGTGCAGATTAA+AGG - chr7_3:82723457-82723476 Msa1130560:CDS 40.0%
!! TAAAAGGAAGAGAGCATCAG+GGG + chr7_3:82723535-82723554 None:intergenic 40.0%
CATAATACCAGAGGCAGTAA+GGG + chr7_3:82723626-82723645 None:intergenic 40.0%
TCCATTAGGCATAATACCAG+AGG + chr7_3:82723635-82723654 None:intergenic 40.0%
AGATAAGGTTACGAGACTCT+TGG + chr7_3:82723839-82723858 None:intergenic 40.0%
TAAGCTTACGGATGGAGATA+AGG + chr7_3:82723854-82723873 None:intergenic 40.0%
ATCTTTGGTAAGCTTACGGA+TGG + chr7_3:82723862-82723881 None:intergenic 40.0%
! GTCGTGACGGAAAATATTTG+AGG + chr7_3:82723986-82724005 None:intergenic 40.0%
TCTCCAGTTCATATGGGAAA+GGG - chr7_3:82724083-82724102 Msa1130560:CDS 40.0%
! ATGTTTTGCGTCGTGACTTT+TGG + chr7_3:82724342-82724361 None:intergenic 40.0%
AAGTCACGACGCAAAACATT+TGG - chr7_3:82724343-82724362 Msa1130560:CDS 40.0%
AGTCACGACGCAAAACATTT+GGG - chr7_3:82724344-82724363 Msa1130560:CDS 40.0%
!! TGCACTTTTAAGGATCTTGC+AGG - chr7_3:82724465-82724484 Msa1130560:CDS 40.0%
!! GCACTTTTAAGGATCTTGCA+GGG - chr7_3:82724466-82724485 Msa1130560:CDS 40.0%
!! CACTTTTAAGGATCTTGCAG+GGG - chr7_3:82724467-82724486 Msa1130560:CDS 40.0%
! GAGGACTGTACTATCTTTTC+TGG - chr7_3:82724515-82724534 Msa1130560:CDS 40.0%
AGTTGTTGTCTTCCACACTT+CGG - chr7_3:82724556-82724575 Msa1130560:CDS 40.0%
TGAGCTAAAGCCAAATTGTG+AGG + chr7_3:82724605-82724624 None:intergenic 40.0%
!! TGGCTTTAGCTCAAATGTCT+CGG - chr7_3:82724612-82724631 Msa1130560:CDS 40.0%
! CACAACAAGGCTTTGTCACT+TGG - chr7_3:82721555-82721574 Msa1130560:three_prime_UTR 45.0%
! AACAAGGCTTTGTCACTTGG+AGG - chr7_3:82721558-82721577 Msa1130560:three_prime_UTR 45.0%
TCATATGAGCAACCGGTGTT+GGG + chr7_3:82721697-82721716 None:intergenic 45.0%
ATCATATGAGCAACCGGTGT+TGG + chr7_3:82721698-82721717 None:intergenic 45.0%
TGCTGTCAAGAGCTCAGAAA+GGG - chr7_3:82721730-82721749 Msa1130560:intron 45.0%
!! TCAGATATGTCAAGGGCGTT+TGG + chr7_3:82722210-82722229 None:intergenic 45.0%
ATGAGATCAAGCACTTCCAG+AGG - chr7_3:82722232-82722251 Msa1130560:three_prime_UTR 45.0%
! TGGTCTAAGTTGGGAACCAA+TGG - chr7_3:82722308-82722327 Msa1130560:three_prime_UTR 45.0%
GTTGGGAACCAATGGTTATG+TGG - chr7_3:82722316-82722335 Msa1130560:three_prime_UTR 45.0%
GGAACCAATGGTTATGTGGA+GGG - chr7_3:82722320-82722339 Msa1130560:three_prime_UTR 45.0%
!! CTTTGGAACCTGTTTCTCTG+AGG + chr7_3:82722347-82722366 None:intergenic 45.0%
! AGGCTGTTGATTGCTTGGAT+TGG - chr7_3:82722397-82722416 Msa1130560:three_prime_UTR 45.0%
!! GTTGATTGCTTGGATTGGTG+TGG - chr7_3:82722402-82722421 Msa1130560:three_prime_UTR 45.0%
!! TGATTGCTTGGATTGGTGTG+GGG - chr7_3:82722404-82722423 Msa1130560:three_prime_UTR 45.0%
TTTACACGGCTTTGCTTCAC+AGG - chr7_3:82722486-82722505 Msa1130560:three_prime_UTR 45.0%
TGGCTCGTTGAAACCAGATT+TGG - chr7_3:82722726-82722745 Msa1130560:three_prime_UTR 45.0%
GGCTCGTTGAAACCAGATTT+GGG - chr7_3:82722727-82722746 Msa1130560:three_prime_UTR 45.0%
GTTTGGTCACAGAATCTCCT+CGG + chr7_3:82722795-82722814 None:intergenic 45.0%
TTCTGTGACCAAACTGCACT+TGG - chr7_3:82722801-82722820 Msa1130560:three_prime_UTR 45.0%
AGACACATCCAAGTGCAGTT+TGG + chr7_3:82722812-82722831 None:intergenic 45.0%
GATGCGGTAATTTCTGCTCT+AGG - chr7_3:82722832-82722851 Msa1130560:three_prime_UTR 45.0%
GAGTGCATATGACCCACAAA+TGG - chr7_3:82723431-82723450 Msa1130560:CDS 45.0%
ACCCACAAATGGAGAGAATG+AGG - chr7_3:82723442-82723461 Msa1130560:CDS 45.0%
CACCTCATTCTCTCCATTTG+TGG + chr7_3:82723447-82723466 None:intergenic 45.0%
!! AAAAGGAAGAGAGCATCAGG+GGG + chr7_3:82723534-82723553 None:intergenic 45.0%
!! ATGTCCGGTGTCACTCATAT+GGG - chr7_3:82723577-82723596 Msa1130560:CDS 45.0%
GCATAATACCAGAGGCAGTA+AGG + chr7_3:82723627-82723646 None:intergenic 45.0%
GCCTCTGGTATTATGCCTAA+TGG - chr7_3:82723631-82723650 Msa1130560:CDS 45.0%
CCAGAATCCAAGCATCCATT+AGG + chr7_3:82723649-82723668 None:intergenic 45.0%
! CCTAATGGATGCTTGGATTC+TGG - chr7_3:82723646-82723665 Msa1130560:CDS 45.0%
GCTGATGGTTCTTGTGTTGT+TGG - chr7_3:82723756-82723775 Msa1130560:intron 45.0%
CTCTCCAGTTCATATGGGAA+AGG - chr7_3:82724082-82724101 Msa1130560:CDS 45.0%
CTCCAGTTCATATGGGAAAG+GGG - chr7_3:82724084-82724103 Msa1130560:CDS 45.0%
AACCCCTTTCCCATATGAAC+TGG + chr7_3:82724089-82724108 None:intergenic 45.0%
GTCACGACGCAAAACATTTG+GGG - chr7_3:82724345-82724364 Msa1130560:CDS 45.0%
!! GGGGACGATTTGAGTTGTTA+AGG - chr7_3:82724486-82724505 Msa1130560:CDS 45.0%
CTTTGACTAAGACCGAAGTG+TGG + chr7_3:82724571-82724590 None:intergenic 45.0%
CACTCTTCTGCCTCACAATT+TGG - chr7_3:82724592-82724611 Msa1130560:CDS 45.0%
TGTCAAAGGGGGTCAGATTT+GGG + chr7_3:82724690-82724709 None:intergenic 45.0%
CAAAGTCCCGGACAAACCAA+AGG + chr7_3:82721502-82721521 None:intergenic 50.0%
!! TTGGTTTGTCCGGGACTTTG+TGG - chr7_3:82721502-82721521 Msa1130560:three_prime_UTR 50.0%
! CATATGAGCAACCGGTGTTG+GGG + chr7_3:82721696-82721715 None:intergenic 50.0%
GTGCTGTCAAGAGCTCAGAA+AGG - chr7_3:82721729-82721748 Msa1130560:intron 50.0%
TGTTCTCTCCCTTCCCAGAA+TGG - chr7_3:82721911-82721930 Msa1130560:three_prime_UTR 50.0%
!! TTCCAGAGGCACTGGATGAA+GGG - chr7_3:82722246-82722265 Msa1130560:three_prime_UTR 50.0%
GGGAACCAATGGTTATGTGG+AGG - chr7_3:82722319-82722338 Msa1130560:three_prime_UTR 50.0%
CAAGCGCTCTTCAAAAGAGG+TGG + chr7_3:82722611-82722630 None:intergenic 50.0%
AGGCAAGCGCTCTTCAAAAG+AGG + chr7_3:82722614-82722633 None:intergenic 50.0%
!!! CTTTTGAAGAGCGCTTGCCT+AGG - chr7_3:82722614-82722633 Msa1130560:three_prime_UTR 50.0%
AGGAATTCAGCACCATGCCT+AGG + chr7_3:82722634-82722653 None:intergenic 50.0%
! CCATATACGGAAGTGCAGCA+AGG + chr7_3:82722654-82722673 None:intergenic 50.0%
CCTTGCTGCACTTCCGTATA+TGG - chr7_3:82722651-82722670 Msa1130560:three_prime_UTR 50.0%
!! TTTTCTGAAGAGCTTGGCCG+AGG - chr7_3:82722775-82722794 Msa1130560:three_prime_UTR 50.0%
GCACTTGGATGTGTCTGATG+CGG - chr7_3:82722816-82722835 Msa1130560:three_prime_UTR 50.0%
TAGTAAGGACTCCCAACAGC+AGG + chr7_3:82722886-82722905 None:intergenic 50.0%
!! AAAGGAAGAGAGCATCAGGG+GGG + chr7_3:82723533-82723552 None:intergenic 50.0%
GATGCTGGTGAGATCATGTC+CGG - chr7_3:82723562-82723581 Msa1130560:CDS 50.0%
!! CATGTCCGGTGTCACTCATA+TGG - chr7_3:82723576-82723595 Msa1130560:CDS 50.0%
GTCACCCATATGAGTGACAC+CGG + chr7_3:82723584-82723603 None:intergenic 50.0%
ACATCTAGCCGTCGGAAACA+AGG + chr7_3:82723804-82723823 None:intergenic 50.0%
TGTGTAGCACATCTAGCCGT+CGG + chr7_3:82723812-82723831 None:intergenic 50.0%
GCAAGGACCAAAAGTCGTGA+CGG + chr7_3:82723999-82724018 None:intergenic 50.0%
AATGCTGCCGTCCTGACTTC+AGG + chr7_3:82722153-82722172 None:intergenic 55.0%
AAGTCAGGACGGCAGCATTC+CGG - chr7_3:82722154-82722173 Msa1130560:three_prime_UTR 55.0%
! TCAAGCACTTCCAGAGGCAC+TGG - chr7_3:82722238-82722257 Msa1130560:three_prime_UTR 55.0%
!! CTTCCAGAGGCACTGGATGA+AGG - chr7_3:82722245-82722264 Msa1130560:three_prime_UTR 55.0%
CTGGATGAAGGGAGAACCTG+TGG - chr7_3:82722257-82722276 Msa1130560:three_prime_UTR 55.0%
AGGGCCCTCCACATAACCAT+TGG + chr7_3:82722327-82722346 None:intergenic 55.0%
! TCTGGTTTCAACGAGCCAGC+AGG + chr7_3:82722724-82722743 None:intergenic 55.0%
TCTCGATCCCTTACTGCCTC+TGG - chr7_3:82723616-82723635 Msa1130560:CDS 55.0%
! TGTCTGAGACGTCGTGAGAC+TGG + chr7_3:82723684-82723703 None:intergenic 55.0%
TACCGTAGCTGCCCCAACAC+CGG - chr7_3:82721682-82721701 Msa1130560:intron 60.0%
! AACCGGTGTTGGGGCAGCTA+CGG + chr7_3:82721687-82721706 None:intergenic 60.0%
CTCAGAAAGGGCTGCCAACC+TGG - chr7_3:82721742-82721761 Msa1130560:intron 60.0%
AGAAAGGGCTGCCAACCTGG+AGG - chr7_3:82721745-82721764 Msa1130560:intron 60.0%
!! CCACGCTGCTTTGGAGGACA+TGG + chr7_3:82721961-82721980 None:intergenic 60.0%
CCATGTCCTCCAAAGCAGCG+TGG - chr7_3:82721958-82721977 Msa1130560:three_prime_UTR 60.0%
TGTCCTCCAAAGCAGCGTGG+AGG - chr7_3:82721961-82721980 Msa1130560:three_prime_UTR 60.0%
! CAACCTCCACGCTGCTTTGG+AGG + chr7_3:82721967-82721986 None:intergenic 60.0%
CCAAAGCAGCGTGGAGGTTG+CGG - chr7_3:82721967-82721986 Msa1130560:three_prime_UTR 60.0%
AGTCAGGACGGCAGCATTCC+GGG - chr7_3:82722155-82722174 Msa1130560:three_prime_UTR 60.0%
CTCCCTTCATCCAGTGCCTC+TGG + chr7_3:82722251-82722270 None:intergenic 60.0%
TGGAGGGCCCTCAGAGAAAC+AGG - chr7_3:82722336-82722355 Msa1130560:three_prime_UTR 60.0%
!! GAAGAGCGCTTGCCTAGGCA+TGG - chr7_3:82722619-82722638 Msa1130560:three_prime_UTR 60.0%
TGCATCTGGGAAGGCCACTG+TGG + chr7_3:82723221-82723240 None:intergenic 60.0%
!! AGAGAGCATCAGGGGGGAGA+GGG + chr7_3:82723527-82723546 None:intergenic 60.0%
!! AAGAGAGCATCAGGGGGGAG+AGG + chr7_3:82723528-82723547 None:intergenic 60.0%
CTGAGACGTCGTGAGACTGG+TGG + chr7_3:82723681-82723700 None:intergenic 60.0%
! CTGCCAACCTGGAGGCATGG+AGG - chr7_3:82721753-82721772 Msa1130560:intron 65.0%
CAGCCTCCATGCCTCCAGGT+TGG + chr7_3:82721759-82721778 None:intergenic 65.0%
! CAACCTGGAGGCATGGAGGC+TGG - chr7_3:82721757-82721776 Msa1130560:intron 65.0%
GTTCCAGCCTCCATGCCTCC+AGG + chr7_3:82721763-82721782 None:intergenic 65.0%
CCGCAACCTCCACGCTGCTT+TGG + chr7_3:82721970-82721989 None:intergenic 65.0%
GGGCTGCCAACCTGGAGGCA+TGG - chr7_3:82721750-82721769 Msa1130560:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 82721496 82724709 82721496 ID=Msa1130560;Name=Msa1130560
chr7_3 mRNA 82721496 82724709 82721496 ID=Msa1130560-mRNA-1;Parent=Msa1130560;Name=Msa1130560-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|1|0.66|1|0.5|0.33|3|1746|433
chr7_3 exon 82721496 82721697 82721496 ID=Msa1130560-mRNA-1:exon:24491;Parent=Msa1130560-mRNA-1
chr7_3 exon 82721782 82723697 82721782 ID=Msa1130560-mRNA-1:exon:24490;Parent=Msa1130560-mRNA-1
chr7_3 exon 82723780 82724709 82723780 ID=Msa1130560-mRNA-1:exon:24489;Parent=Msa1130560-mRNA-1
chr7_3 CDS 82723780 82724709 82723780 ID=Msa1130560-mRNA-1:cds;Parent=Msa1130560-mRNA-1
chr7_3 CDS 82723326 82723697 82723326 ID=Msa1130560-mRNA-1:cds;Parent=Msa1130560-mRNA-1
chr7_3 three_prime_UTR 82721782 82723325 82721782 ID=Msa1130560-mRNA-1:three_prime_utr;Parent=Msa1130560-mRNA-1
chr7_3 three_prime_UTR 82721496 82721697 82721496 ID=Msa1130560-mRNA-1:three_prime_utr;Parent=Msa1130560-mRNA-1
Gene Sequence

>Msa1130560

ATGCCTTTGGTTTGTCCGGGACTTTGTGGAAAAGAATACGGTCCTTCTCATAAATATTTCACAACAAGGCTTTGTCACTTGGAGGCCTTGATTGTTTTACCTTTTCATAATATCCTATTTGATCCTAAACTGAATGCCTACATTATAAATGGCAGTGACAATTGCAATACATCCATATATGGATTTTACCGTAGCTGCCCCAACACCGGTTGCTCATATGATCTCTGTCTCGTGTGCTGTCAAGAGCTCAGAAAGGGCTGCCAACCTGGAGGCATGGAGGCTGGAACGTCTCATGAAAAATTTGAAGAGATTTTTCACCATCACGGTTCAACAAAAAATCGGAGTAAAATACATCGTAAAAGATATGACTGGGAGAGCGAACTTGCACCTACTAGTTTTCATTCTCAGGCTGACATGTTCTCTCCCTTCCCAGAATGGAAAGCTAATAGTGATGGTAACATTCCATGTCCTCCAAAGCAGCGTGGAGGTTGCGGTACTGCATTACTAGAACTGAGACGCATTTACAAAGCTAATTGGGTAGCAAAACTACTAAATAATGCTGAGGATCTCACTAGAAATTACACACCACTGGATGTGGATATTACTGATAAGTGTTCTTCCTGCCAGCTAAACTTGTTAGAAGGAAAAATCAATCCTGAAGTCAGGACGGCAGCATTCCGGGATGACAGTAAAGATAACTTCTTATATAGTCCAAACGCCCTTGACATATCTGATGATGAGATCAAGCACTTCCAGAGGCACTGGATGAAGGGAGAACCTGTGGTTGTGAGAAATGTTTTGGCCAAAACATCTGGTCTAAGTTGGGAACCAATGGTTATGTGGAGGGCCCTCAGAGAAACAGGTTCCAAAGCGAAGTTGAAAGAGGAAACACAAAGTGTTAAGGCTGTTGATTGCTTGGATTGGTGTGGGGTTGAAATTAATATACACCAATTTTTTCAAGGCTACGTAAAGGGTCGAATGCATAAAGATAAGTGGCCAGAAATGTTGAAATTGAAAGATTGGCCTTCATCCACCTCTTTTGAAGAGCGCTTGCCTAGGCATGGTGCTGAATTCCTTGCTGCACTTCCGTATATGGACTACACTGATCCAAAATCAGGTCTTTTAAATTTTGCTAGTAAACTTCCTGCTGGCTCGTTGAAACCAGATTTGGGACCCAAAACATATATTGCTTATGGATTTTCTGAAGAGCTTGGCCGAGGAGATTCTGTGACCAAACTGCACTTGGATGTGTCTGATGCGGTAATTTCTGCTCTAGGAAATCCTTGTGTTCTTTACATGTAG
Protein sequence

>Msa1130560

MPLVCPGLCGKEYGPSHKYFTTRLCHLEALIVLPFHNILFDPKLNAYIINGSDNCNTSIYGFYRSCPNTGCSYDLCLVCCQELRKGCQPGGMEAGTSHEKFEEIFHHHGSTKNRSKIHRKRYDWESELAPTSFHSQADMFSPFPEWKANSDGNIPCPPKQRGGCGTALLELRRIYKANWVAKLLNNAEDLTRNYTPLDVDITDKCSSCQLNLLEGKINPEVRTAAFRDDSKDNFLYSPNALDISDDEIKHFQRHWMKGEPVVVRNVLAKTSGLSWEPMVMWRALRETGSKAKLKEETQSVKAVDCLDWCGVEINIHQFFQGYVKGRMHKDKWPEMLKLKDWPSSTSFEERLPRHGAEFLAALPYMDYTDPKSGLLNFASKLPAGSLKPDLGPKTYIAYGFSEELGRGDSVTKLHLDVSDAVISALGNPCVLYM*