AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1341530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341530 MtrunA17_Chr7g0275771 97.561 369 9 0 53 421 268 636 0.0 768
Msa1341530 MtrunA17_Chr1g0147021 52.957 372 130 5 53 421 1001 1330 1.09e-122 391
Msa1341530 MtrunA17_Chr1g0211711 49.737 380 154 10 53 421 475 828 1.01e-104 333
Msa1341530 MtrunA17_Chr1g0183311 47.200 375 175 8 53 421 276 633 2.14e-103 327
Msa1341530 MtrunA17_Chr1g0211661 49.462 372 170 7 53 421 357 713 4.42e-97 310
Msa1341530 MtrunA17_Chr1g0211691 46.966 379 169 10 53 421 477 833 2.11e-96 310
Msa1341530 MtrunA17_Chr5g0426961 46.631 371 182 6 53 421 273 629 2.73e-93 299
Msa1341530 MtrunA17_Chr1g0192011 40.106 379 182 6 43 421 383 716 1.47e-86 284
Msa1341530 MtrunA17_Chr4g0075261 42.049 371 165 8 53 421 296 618 5.65e-85 277
Msa1341530 MtrunA17_Chr5g0420361 42.667 375 187 12 53 421 208 560 4.03e-82 269
Msa1341530 MtrunA17_Chr2g0289121 40.108 369 176 6 53 421 285 608 9.56e-82 268
Msa1341530 MtrunA17_Chr5g0448301 45.187 374 164 10 53 421 172 509 1.49e-81 263
Msa1341530 MtrunA17_Chr6g0472441 40.526 380 189 12 53 425 151 500 2.39e-75 249
Msa1341530 MtrunA17_Chr2g0289031 56.522 184 80 0 238 421 9 192 7.33e-65 213
Msa1341530 MtrunA17_Chr8g0361381 51.852 189 85 2 233 421 26 208 8.62e-63 202
Msa1341530 MtrunA17_Chr4g0048531 43.431 274 149 3 149 421 722 990 7.06e-62 217
Msa1341530 MtrunA17_Chr2g0281051 36.979 384 191 12 55 421 341 690 6.68e-60 210
Msa1341530 MtrunA17_Chr7g0231061 54.331 127 58 0 295 421 7 133 9.13e-38 136
Msa1341530 MtrunA17_Chr2g0289091 58.559 111 46 0 311 421 21 131 5.08e-37 140
Msa1341530 MtrunA17_Chr8g0364421 34.764 233 111 7 53 285 27 218 4.40e-32 122
Msa1341530 MtrunA17_Chr8g0340381 60.870 92 32 2 334 425 36 123 1.67e-28 110
Msa1341530 MtrunA17_Chr2g0289101 28.767 146 88 4 53 198 8 137 2.99e-14 70.5
Msa1341530 MtrunA17_Chr2g0289041 35.398 113 54 5 53 164 110 204 6.28e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341530 AT4G00990.3 58.182 385 126 7 40 421 201 553 7.28e-150 444
Msa1341530 AT4G00990.2 58.182 385 126 7 40 421 201 553 7.96e-150 444
Msa1341530 AT4G00990.1 58.182 385 126 7 40 421 201 553 1.41e-149 446
Msa1341530 AT1G11950.2 48.649 370 162 7 53 421 323 665 3.06e-107 335
Msa1341530 AT1G11950.1 48.787 371 160 8 53 421 323 665 8.89e-107 335
Msa1341530 AT1G11950.3 48.787 371 160 8 53 421 323 665 8.89e-107 335
Msa1341530 AT1G62310.1 47.709 371 166 8 53 421 339 683 7.38e-106 333
Msa1341530 AT3G07610.2 48.239 284 133 4 146 425 417 690 4.54e-81 265
Msa1341530 AT3G07610.1 48.929 280 129 4 146 421 417 686 2.25e-79 265
Msa1341530 AT3G07610.3 48.746 279 129 4 146 420 417 685 1.54e-78 263
Msa1341530 AT1G09060.2 36.559 372 183 8 55 421 335 658 3.58e-70 239
Msa1341530 AT1G09060.1 36.559 372 183 8 55 421 335 658 3.58e-70 239
Msa1341530 AT1G09060.4 36.559 372 183 8 55 421 349 672 4.24e-70 239
Msa1341530 AT1G09060.3 36.559 372 183 8 55 421 349 672 4.24e-70 239
Msa1341530 AT4G21430.1 35.055 271 160 5 156 421 412 671 3.23e-42 159

Find 196 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCAATTTCAACATTTC+TGG 0.120735 tig0004829:+91983 None:intergenic
TAGAGGGACTAAACGAAATT+TGG 0.136911 tig0004829:-90167 Msa1341530:three_prime_UTR
CACTCTTCTGCCTCACAATT+TGG 0.152053 tig0004829:-90049 Msa1341530:three_prime_UTR
TCCATAAGCAATATATGTTT+TGG 0.206014 tig0004829:+91805 None:intergenic
GACGCATTTACAAAGCTAAT+TGG 0.212539 tig0004829:-92547 Msa1341530:CDS
CCTTGCTGCACTTCCGTATA+TGG 0.220636 tig0004829:-91906 Msa1341530:CDS
TCACTATTAGCTTTCCATTC+TGG 0.221053 tig0004829:+92632 None:intergenic
CATCACATTGTCCAATTCTT+TGG 0.222867 tig0004829:+91239 None:intergenic
ACCAGCATCTTCCATTTAAA+AGG 0.223935 tig0004829:+91009 None:intergenic
AAATTTAAAAGACCTGATTT+TGG 0.227869 tig0004829:+91872 None:intergenic
TACCACACAATTATGATCTT+TGG 0.236760 tig0004829:+90683 None:intergenic
CATGAAATTGTAGCTCATTT+AGG 0.236993 tig0004829:+91262 None:intergenic
CCCAAAACATATATTGCTTA+TGG 0.252702 tig0004829:-91806 Msa1341530:CDS
CCTAATGGATGCTTGGATTC+TGG 0.266923 tig0004829:-90911 Msa1341530:three_prime_UTR
GAATGAGGTGTGCAGATTAA+AGG 0.276568 tig0004829:-91100 Msa1341530:three_prime_UTR
TTCTATGCCTTTGGTTTGTC+CGG 0.280508 tig0004829:-93065 None:intergenic
CTGAATGCCTACATTATAAA+TGG 0.280883 tig0004829:-92932 Msa1341530:CDS
ATACACACAAGTTTACTTAA+AGG 0.283933 tig0004829:+90539 None:intergenic
TTTCTTGAATTGATATTTAG+AGG 0.296637 tig0004829:-91167 Msa1341530:three_prime_UTR
GGTTTCATCTTCTATGCCTT+TGG 0.300132 tig0004829:-93074 None:intergenic
CACTATTAGCTTTCCATTCT+GGG 0.308619 tig0004829:+92633 None:intergenic
ATATTTAGAGGTAGTGTATA+TGG 0.319006 tig0004829:-91155 Msa1341530:three_prime_UTR
TGTTAACTCTCCAGTTCATA+TGG 0.325715 tig0004829:-90481 Msa1341530:three_prime_UTR
CCAACTTAGACCAGATGTTT+TGG 0.327801 tig0004829:+92259 None:intergenic
GCTGATGGTTCTTGTGTTGT+TGG 0.329327 tig0004829:-90801 Msa1341530:three_prime_UTR
ACAATTTCATGCCAAAGAAT+TGG 0.333187 tig0004829:-91250 Msa1341530:three_prime_UTR
ATAATGTAGGCATTCAGTTT+AGG 0.335215 tig0004829:+92938 None:intergenic
CACCTCATTCTCTCCATTTG+TGG 0.337561 tig0004829:+91113 None:intergenic
TGGCTCGTTGAAACCAGATT+TGG 0.338002 tig0004829:-91831 Msa1341530:CDS
CTCAGAAAGGGCTGCCAACC+TGG 0.342470 tig0004829:-92815 Msa1341530:CDS
AATTGCAATACATCCATATA+TGG 0.343840 tig0004829:-92902 Msa1341530:CDS
CCGCAACCTCCACGCTGCTT+TGG 0.346427 tig0004829:+92590 None:intergenic
CATTCAGTTTAGGATCAAAT+AGG 0.347182 tig0004829:+92948 None:intergenic
GCCTCTGGTATTATGCCTAA+TGG 0.348626 tig0004829:-90926 Msa1341530:three_prime_UTR
AATGCTGCCGTCCTGACTTC+AGG 0.358100 tig0004829:+92407 None:intergenic
AAATGTTGAAATTGAAAGAT+TGG 0.360364 tig0004829:-91979 Msa1341530:CDS
AGAGGGACTAAACGAAATTT+GGG 0.360449 tig0004829:-90166 Msa1341530:three_prime_UTR
GCTACGGTAAAATCCATATA+TGG 0.365215 tig0004829:+92889 None:intergenic
TTCCTCTTTCAACTTCGCTT+TGG 0.365483 tig0004829:+92196 None:intergenic
CGCTGATAAATCTAATAATC+TGG 0.366014 tig0004829:-91649 Msa1341530:three_prime_UTR
AGTCAGGACGGCAGCATTCC+GGG 0.366559 tig0004829:-92402 Msa1341530:CDS
CACAACAAGGCTTTGTCACT+TGG 0.366672 tig0004829:-93002 Msa1341530:CDS
TGCCAGCTAAACTTGTTAGA+AGG 0.368652 tig0004829:-92440 Msa1341530:CDS
GGATCAGTGTAGTCCATATA+CGG 0.368658 tig0004829:+91893 None:intergenic
ATGAAATGCTGGGACAAGTA+TGG 0.369813 tig0004829:+91388 None:intergenic
ACCTCATTCTCTCCATTTGT+GGG 0.374017 tig0004829:+91114 None:intergenic
AGTCACGACGCAAAACATTT+GGG 0.379238 tig0004829:-90213 Msa1341530:three_prime_UTR
AAGTCACGACGCAAAACATT+TGG 0.379376 tig0004829:-90214 Msa1341530:three_prime_UTR
TCATATGAGCAACCGGTGTT+GGG 0.387584 tig0004829:+92863 None:intergenic
TGGAGGGCCCTCAGAGAAAC+AGG 0.401355 tig0004829:-92221 Msa1341530:CDS
TGTGGTTGTGAGAAATGTTT+TGG 0.402232 tig0004829:-92282 Msa1341530:CDS
CTCCCTTCATCCAGTGCCTC+TGG 0.403927 tig0004829:+92309 None:intergenic
CAACCTCCACGCTGCTTTGG+AGG 0.406325 tig0004829:+92593 None:intergenic
TCAGATATGTCAAGGGCGTT+TGG 0.411554 tig0004829:+92350 None:intergenic
CATGTCCGGTGTCACTCATA+TGG 0.413293 tig0004829:-90981 Msa1341530:three_prime_UTR
CCAAAACATCTGGTCTAAGT+TGG 0.422615 tig0004829:-92259 Msa1341530:CDS
ATCATATGAGCAACCGGTGT+TGG 0.424828 tig0004829:+92862 None:intergenic
GGCTCGTTGAAACCAGATTT+GGG 0.425618 tig0004829:-91830 Msa1341530:CDS
TTCTGTATATAAATGTCAAA+GGG 0.425677 tig0004829:+89942 None:intergenic
TTTAAAAGGAAGAGAGCATC+AGG 0.428506 tig0004829:+91023 None:intergenic
GCAATATAATAAATACTAGA+AGG 0.428813 tig0004829:+90828 None:intergenic
TATGATCTTTGGTAAGCTTA+CGG 0.434111 tig0004829:+90694 None:intergenic
TTGATTGCTTGGATTGGTGT+GGG 0.436266 tig0004829:-92154 Msa1341530:CDS
AACCCCTTTCCCATATGAAC+TGG 0.443211 tig0004829:+90471 None:intergenic
AATCAATTACTTTCAACAAA+AGG 0.445010 tig0004829:+91469 None:intergenic
TTCTGTGACCAAACTGCACT+TGG 0.447540 tig0004829:-91756 Msa1341530:CDS
TTATTCTTGTCATTATTTGT+TGG 0.448416 tig0004829:+91561 None:intergenic
ACGCATTTACAAAGCTAATT+GGG 0.448708 tig0004829:-92546 Msa1341530:CDS
TCTCCAGTTCATATGGGAAA+GGG 0.453870 tig0004829:-90474 Msa1341530:three_prime_UTR
TTGGTTTGTCCGGGACTTTG+TGG 0.454078 tig0004829:-93055 Msa1341530:CDS
TGTTAAGGCTGTTGATTGCT+TGG 0.454355 tig0004829:-92165 Msa1341530:CDS
TTCTAACAAGTTTAGCTGGC+AGG 0.459337 tig0004829:+92442 None:intergenic
CAACCTGGAGGCATGGAGGC+TGG 0.460136 tig0004829:-92800 Msa1341530:CDS
GTTGATTGCTTGGATTGGTG+TGG 0.461006 tig0004829:-92155 Msa1341530:CDS
TTCCTTCTAACAAGTTTAGC+TGG 0.463979 tig0004829:+92438 None:intergenic
GCATAATACCAGAGGCAGTA+AGG 0.464570 tig0004829:+90933 None:intergenic
GTCACTGCCATTTATAATGT+AGG 0.466830 tig0004829:+92925 None:intergenic
TTTGGAACCTGTTTCTCTGA+GGG 0.469787 tig0004829:+92214 None:intergenic
AGACACATCCAAGTGCAGTT+TGG 0.473593 tig0004829:+91748 None:intergenic
AGATTTATCAGCGATTAGTA+AGG 0.474185 tig0004829:+91659 None:intergenic
CTTCCAGAGGCACTGGATGA+AGG 0.474463 tig0004829:-92312 Msa1341530:CDS
ACATGTAGAAACCTGCTGTT+GGG 0.475017 tig0004829:-91685 Msa1341530:exon
AGGCTGTTGATTGCTTGGAT+TGG 0.480261 tig0004829:-92160 Msa1341530:CDS
GACTACACTGATCCAAAATC+AGG 0.480455 tig0004829:-91884 Msa1341530:CDS
CAAAACATCTGGTCTAAGTT+GGG 0.481497 tig0004829:-92258 Msa1341530:CDS
CCAAAGCAGCGTGGAGGTTG+CGG 0.481572 tig0004829:-92590 Msa1341530:CDS
TTTGCTAGTAAACTTCCTGC+TGG 0.483596 tig0004829:-91851 Msa1341530:CDS
AATTGCAATAAATCAGAAAA+CGG 0.483960 tig0004829:-91538 Msa1341530:three_prime_UTR
TCTATGCCTTTGGTTTGTCC+GGG 0.484589 tig0004829:-93064 Msa1341530:CDS
TCTCGATCCCTTACTGCCTC+TGG 0.484948 tig0004829:-90941 Msa1341530:three_prime_UTR
TGTTCTCTCCCTTCCCAGAA+TGG 0.488292 tig0004829:-92646 Msa1341530:CDS
AACCGGTGTTGGGGCAGCTA+CGG 0.490680 tig0004829:+92873 None:intergenic
GTTAACTCTCCAGTTCATAT+GGG 0.490838 tig0004829:-90480 Msa1341530:three_prime_UTR
AGAGGAAACACAAAGTGTTA+AGG 0.491693 tig0004829:-92180 Msa1341530:CDS
AACAAGGCTTTGTCACTTGG+AGG 0.492837 tig0004829:-92999 Msa1341530:CDS
ACAGAGATCATATGAGCAAC+CGG 0.493700 tig0004829:+92856 None:intergenic
TATTATGCCTAATGGATGCT+TGG 0.495478 tig0004829:-90918 Msa1341530:three_prime_UTR
GAAATCATAAGATGAAATGC+TGG 0.496691 tig0004829:+91377 None:intergenic
GGGCTGCCAACCTGGAGGCA+TGG 0.498628 tig0004829:-92807 Msa1341530:CDS
AAATTACACACCACTGGATG+TGG 0.499086 tig0004829:-92486 Msa1341530:CDS
GATGCAAATTCAAATACATC+AGG 0.499288 tig0004829:-91220 Msa1341530:three_prime_UTR
TCAAGCACTTCCAGAGGCAC+TGG 0.499542 tig0004829:-92319 Msa1341530:CDS
TACATCGTAAAAGATATGAC+TGG 0.502695 tig0004829:-92712 Msa1341530:CDS
GAAGAGCGCTTGCCTAGGCA+TGG 0.506411 tig0004829:-91938 Msa1341530:CDS
ATCTTTGGTAAGCTTACGGA+TGG 0.508515 tig0004829:+90698 None:intergenic
CTTTGGAACCTGTTTCTCTG+AGG 0.509010 tig0004829:+92213 None:intergenic
TATTATATTGCAGTTGCTGA+TGG 0.512107 tig0004829:-90816 Msa1341530:three_prime_UTR
TACATGTAGAAACCTGCTGT+TGG 0.516556 tig0004829:-91686 Msa1341530:exon
TCAAATAGGATATTATGAAA+AGG 0.517375 tig0004829:+92962 None:intergenic
ATGAAAAGGTAAAACAATCA+AGG 0.518521 tig0004829:+92976 None:intergenic
TTTCTGTATATAAATGTCAA+AGG 0.519690 tig0004829:+89941 None:intergenic
TTAGCTTTCCATTCTGGGAA+GGG 0.520236 tig0004829:+92638 None:intergenic
CCACGCTGCTTTGGAGGACA+TGG 0.521105 tig0004829:+92599 None:intergenic
TAGTAAGGACTCCCAACAGC+AGG 0.521995 tig0004829:+91674 None:intergenic
TAAGCTTACGGATGGAGATA+AGG 0.522114 tig0004829:+90706 None:intergenic
TGGCTTTAGCTCAAATGTCT+CGG 0.522919 tig0004829:-90029 Msa1341530:three_prime_UTR
GTTGTGAAATATTTATGAGA+AGG 0.522927 tig0004829:+93019 None:intergenic
TGTCTGAGACGTCGTGAGAC+TGG 0.524468 tig0004829:+90876 None:intergenic
TGCTGTCAAGAGCTCAGAAA+GGG 0.524593 tig0004829:-92827 Msa1341530:CDS
GAGTGCATATGACCCACAAA+TGG 0.525600 tig0004829:-91126 Msa1341530:three_prime_UTR
CTCTCCAGTTCATATGGGAA+AGG 0.526718 tig0004829:-90475 Msa1341530:three_prime_UTR
CATAATACCAGAGGCAGTAA+GGG 0.534819 tig0004829:+90934 None:intergenic
ATGTCCGGTGTCACTCATAT+GGG 0.534934 tig0004829:-90980 Msa1341530:three_prime_UTR
CACTAGAAATTACACACCAC+TGG 0.535964 tig0004829:-92492 Msa1341530:CDS
TTCCAGAGGCACTGGATGAA+GGG 0.536895 tig0004829:-92311 Msa1341530:CDS
CCAGAATCCAAGCATCCATT+AGG 0.537292 tig0004829:+90911 None:intergenic
GGACTTTGTGGAAAAGAATA+CGG 0.540970 tig0004829:-93043 Msa1341530:CDS
ATTAGCTTTCCATTCTGGGA+AGG 0.541639 tig0004829:+92637 None:intergenic
GTCAAGACACATTTGTTGAA+AGG 0.543319 tig0004829:+91496 None:intergenic
CTCATAAATATTTCACAACA+AGG 0.543675 tig0004829:-93015 Msa1341530:CDS
GTTCCAGCCTCCATGCCTCC+AGG 0.544115 tig0004829:+92797 None:intergenic
TCTTCAAAAGAGGTGGATGA+AGG 0.544342 tig0004829:+91956 None:intergenic
TCTGGTTTCAACGAGCCAGC+AGG 0.545236 tig0004829:+91836 None:intergenic
GTTGGGAACCAATGGTTATG+TGG 0.549955 tig0004829:-92241 Msa1341530:CDS
GATGCGGTAATTTCTGCTCT+AGG 0.550602 tig0004829:-91725 Msa1341530:CDS
CACAAGTTTACTTAAAGGCA+AGG 0.552252 tig0004829:+90544 None:intergenic
TGGTCTAAGTTGGGAACCAA+TGG 0.552684 tig0004829:-92249 Msa1341530:CDS
AAATCATAAGATGAAATGCT+GGG 0.552758 tig0004829:+91378 None:intergenic
GTCGAATGCATAAAGATAAG+TGG 0.555220 tig0004829:-92006 Msa1341530:CDS
TAAAAGGAAGAGAGCATCAG+GGG 0.555627 tig0004829:+91025 None:intergenic
AAAACATTTCTCACAACCAC+AGG 0.556803 tig0004829:+92284 None:intergenic
AGATAAGGTTACGAGACTCT+TGG 0.562330 tig0004829:+90721 None:intergenic
GAATGGAAAGCTAATAGTGA+TGG 0.562940 tig0004829:-92629 Msa1341530:CDS
CTCCAGTTCATATGGGAAAG+GGG 0.570034 tig0004829:-90473 Msa1341530:three_prime_UTR
TACCGTAGCTGCCCCAACAC+CGG 0.571816 tig0004829:-92875 Msa1341530:CDS
GTGCTGTCAAGAGCTCAGAA+AGG 0.573335 tig0004829:-92828 Msa1341530:CDS
AGGCAAGCGCTCTTCAAAAG+AGG 0.574024 tig0004829:+91946 None:intergenic
ACATCTAGCCGTCGGAAACA+AGG 0.575584 tig0004829:+90756 None:intergenic
AGTTATCTTTACTGTCATCC+CGG 0.575632 tig0004829:+92384 None:intergenic
AGGGCCCTCCACATAACCAT+TGG 0.576182 tig0004829:+92233 None:intergenic
CATATGAGCAACCGGTGTTG+GGG 0.581272 tig0004829:+92864 None:intergenic
TTCCAAAGCGAAGTTGAAAG+AGG 0.582695 tig0004829:-92198 Msa1341530:CDS
ACCCACAAATGGAGAGAATG+AGG 0.583049 tig0004829:-91115 Msa1341530:three_prime_UTR
GCCTGAGAATGAAAACTAGT+AGG 0.583092 tig0004829:+92674 None:intergenic
AGGAATTCAGCACCATGCCT+AGG 0.583338 tig0004829:+91926 None:intergenic
GATGCTGGTGAGATCATGTC+CGG 0.583706 tig0004829:-90995 Msa1341530:three_prime_UTR
AGTTGTTGTCTTCCACACTT+CGG 0.586713 tig0004829:-90085 Msa1341530:three_prime_UTR
ATTACTTTCAACAAAAGGAA+CGG 0.594367 tig0004829:+91474 None:intergenic
TCTCATCATCAGATATGTCA+AGG 0.595439 tig0004829:+92342 None:intergenic
GTCGTGACGGAAAATATTTG+AGG 0.600845 tig0004829:+90574 None:intergenic
GGAACCAATGGTTATGTGGA+GGG 0.602890 tig0004829:-92237 Msa1341530:CDS
CTGCCAACCTGGAGGCATGG+AGG 0.608369 tig0004829:-92804 Msa1341530:CDS
CAAGCGCTCTTCAAAAGAGG+TGG 0.609569 tig0004829:+91949 None:intergenic
AATTTCAACCTTGTTTCCGA+CGG 0.610631 tig0004829:-90764 Msa1341530:three_prime_UTR
AAAACTACTAAATAATGCTG+AGG 0.613650 tig0004829:-92519 Msa1341530:CDS
GTTTGGTCACAGAATCTCCT+CGG 0.620832 tig0004829:+91765 None:intergenic
ACATCGTAAAAGATATGACT+GGG 0.621776 tig0004829:-92711 Msa1341530:CDS
TTCTACATGTAAAGAACACA+AGG 0.622174 tig0004829:+91698 None:intergenic
GTCACGACGCAAAACATTTG+GGG 0.622188 tig0004829:-90212 Msa1341530:three_prime_UTR
TGATTGCTTGGATTGGTGTG+GGG 0.624612 tig0004829:-92153 Msa1341530:intron
GGGAACCAATGGTTATGTGG+AGG 0.624618 tig0004829:-92238 Msa1341530:CDS
TACCAAAGATCATAATTGTG+TGG 0.629980 tig0004829:-90685 Msa1341530:three_prime_UTR
GCAAGGACCAAAAGTCGTGA+CGG 0.630979 tig0004829:+90561 None:intergenic
GTCACCCATATGAGTGACAC+CGG 0.633922 tig0004829:+90976 None:intergenic
TGTGTAGCACATCTAGCCGT+CGG 0.638083 tig0004829:+90748 None:intergenic
CAAAGTCCCGGACAAACCAA+AGG 0.639850 tig0004829:+93058 None:intergenic
TGAGCTAAAGCCAAATTGTG+AGG 0.642278 tig0004829:+90039 None:intergenic
CTCATCATCAGATATGTCAA+GGG 0.643129 tig0004829:+92343 None:intergenic
CTGAGACGTCGTGAGACTGG+TGG 0.645259 tig0004829:+90879 None:intergenic
TCCATTAGGCATAATACCAG+AGG 0.648409 tig0004829:+90925 None:intergenic
TGCATCTGGGAAGGCCACTG+TGG 0.653021 tig0004829:+91339 None:intergenic
AGAAAGGGCTGCCAACCTGG+AGG 0.659756 tig0004829:-92812 Msa1341530:CDS
AATCAATCCTGAAGTCAGGA+CGG 0.661137 tig0004829:-92414 Msa1341530:CDS
TCTGTATATAAATGTCAAAG+GGG 0.662399 tig0004829:+89943 None:intergenic
CCATATACGGAAGTGCAGCA+AGG 0.667187 tig0004829:+91906 None:intergenic
AAAAGGAAGAGAGCATCAGG+GGG 0.668628 tig0004829:+91026 None:intergenic
CTGTATATAAATGTCAAAGG+GGG 0.670905 tig0004829:+89944 None:intergenic
TCAGTAATATCCACATCCAG+TGG 0.671163 tig0004829:+92476 None:intergenic
CTGGATGAAGGGAGAACCTG+TGG 0.674541 tig0004829:-92300 Msa1341530:CDS
TTAAAAGGAAGAGAGCATCA+GGG 0.675485 tig0004829:+91024 None:intergenic
CTTTGACTAAGACCGAAGTG+TGG 0.691670 tig0004829:+90073 None:intergenic
TGTCCTCCAAAGCAGCGTGG+AGG 0.692688 tig0004829:-92596 Msa1341530:CDS
ATGAGATCAAGCACTTCCAG+AGG 0.695160 tig0004829:-92325 Msa1341530:CDS
GCACTTGGATGTGTCTGATG+CGG 0.702546 tig0004829:-91741 Msa1341530:CDS
CCATGTCCTCCAAAGCAGCG+TGG 0.720281 tig0004829:-92599 Msa1341530:CDS
AAAGGAAGAGAGCATCAGGG+GGG 0.759786 tig0004829:+91027 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTAACATCAAAT+TGG + tig0004829:91827-91846 None:intergenic 10.0%
!!! CTTTTTAATCCTTTTTTATT+TGG - tig0004829:91598-91617 Msa1341530:three_prime_UTR 15.0%
!! AAATTCATTCAAAAATATGA+AGG - tig0004829:92746-92765 Msa1341530:CDS 15.0%
!! AATTCATTCAAAAATATGAA+GGG - tig0004829:92747-92766 Msa1341530:CDS 15.0%
!! AAAAAAAAATTCGAAAAAAG+AGG + tig0004829:93017-93036 None:intergenic 15.0%
!! TCAAATAGGATATTATGAAA+AGG + tig0004829:90057-90076 None:intergenic 20.0%
!!! CATACTTCATTTTATTTACA+CGG - tig0004829:90931-90950 Msa1341530:three_prime_UTR 20.0%
!!! AATATACACCAATTTTTTCA+AGG - tig0004829:90976-90995 Msa1341530:three_prime_UTR 20.0%
!! AAATGTTGAAATTGAAAGAT+TGG - tig0004829:91037-91056 Msa1341530:three_prime_UTR 20.0%
!!! AAATTTAAAAGACCTGATTT+TGG + tig0004829:91147-91166 None:intergenic 20.0%
!! TTATTCTTGTCATTATTTGT+TGG + tig0004829:91458-91477 None:intergenic 20.0%
!! AATTGCAATAAATCAGAAAA+CGG - tig0004829:91478-91497 Msa1341530:three_prime_UTR 20.0%
!! AATCAATTACTTTCAACAAA+AGG + tig0004829:91550-91569 None:intergenic 20.0%
!!! TTGCTTAAGATATGATTTTT+AGG - tig0004829:91568-91587 Msa1341530:three_prime_UTR 20.0%
!!! TGCTTAAGATATGATTTTTA+GGG - tig0004829:91569-91588 Msa1341530:three_prime_UTR 20.0%
!! TTTCTTGAATTGATATTTAG+AGG - tig0004829:91849-91868 Msa1341530:CDS 20.0%
!! GCAATATAATAAATACTAGA+AGG + tig0004829:92191-92210 None:intergenic 20.0%
!!! ATAATTGTGTGGTAATTTTT+AGG - tig0004829:92342-92361 Msa1341530:CDS 20.0%
!!! TAATTGTGTGGTAATTTTTA+GGG - tig0004829:92343-92362 Msa1341530:CDS 20.0%
!!! CTAAATTTGAGATTTTTACA+AGG + tig0004829:92386-92405 None:intergenic 20.0%
!!! AAAAATATTTCAGCAAGTTT+TGG - tig0004829:92418-92437 Msa1341530:CDS 20.0%
!! TATAAAAATCTCTCTTATGA+AGG - tig0004829:92589-92608 Msa1341530:CDS 20.0%
!!! TAAAAAATTTCAGCAAGTTT+TGG + tig0004829:92831-92850 None:intergenic 20.0%
!!! TCAGATTTGGAATTTTTTTT+GGG + tig0004829:93052-93071 None:intergenic 20.0%
! GTTGTGAAATATTTATGAGA+AGG + tig0004829:90000-90019 None:intergenic 25.0%
! CTCATAAATATTTCACAACA+AGG - tig0004829:90001-90020 Msa1341530:three_prime_UTR 25.0%
! ATGAAAAGGTAAAACAATCA+AGG + tig0004829:90043-90062 None:intergenic 25.0%
! AATTGCAATACATCCATATA+TGG - tig0004829:90114-90133 Msa1341530:three_prime_UTR 25.0%
! AAAACTACTAAATAATGCTG+AGG - tig0004829:90497-90516 Msa1341530:three_prime_UTR 25.0%
! TCTTTCAATTTCAACATTTC+TGG + tig0004829:91036-91055 None:intergenic 25.0%
!! CCATAAGCAATATATGTTTT+GGG + tig0004829:91213-91232 None:intergenic 25.0%
!! TCCATAAGCAATATATGTTT+TGG + tig0004829:91214-91233 None:intergenic 25.0%
! ATTACTTTCAACAAAAGGAA+CGG + tig0004829:91545-91564 None:intergenic 25.0%
! AAATCATAAGATGAAATGCT+GGG + tig0004829:91641-91660 None:intergenic 25.0%
! ATATTTAGAGGTAGTGTATA+TGG - tig0004829:91861-91880 Msa1341530:CDS 25.0%
!!! AACTTGCTGAAATATTTTTG+AGG + tig0004829:92417-92436 None:intergenic 25.0%
! ATACACACAAGTTTACTTAA+AGG + tig0004829:92480-92499 None:intergenic 25.0%
!!! AACTTGCTGAAATTTTTTAG+AGG - tig0004829:92832-92851 Msa1341530:CDS 25.0%
!!! ACTTGCTGAAATTTTTTAGA+GGG - tig0004829:92833-92852 Msa1341530:CDS 25.0%
!!! ACGAAATTTGGGATTTTTAT+AGG - tig0004829:92861-92880 Msa1341530:CDS 25.0%
!!! CGAAATTTGGGATTTTTATA+GGG - tig0004829:92862-92881 Msa1341530:CDS 25.0%
! AAAAATTCGAAAAAAGAGGT+TGG + tig0004829:93013-93032 None:intergenic 25.0%
!!! GTCAGATTTGGAATTTTTTT+TGG + tig0004829:93053-93072 None:intergenic 25.0%
! CATTCAGTTTAGGATCAAAT+AGG + tig0004829:90071-90090 None:intergenic 30.0%
ATAATGTAGGCATTCAGTTT+AGG + tig0004829:90081-90100 None:intergenic 30.0%
CTGAATGCCTACATTATAAA+TGG - tig0004829:90084-90103 Msa1341530:three_prime_UTR 30.0%
ATCACGGTTCAACAAAAAAT+CGG - tig0004829:90274-90293 Msa1341530:three_prime_UTR 30.0%
TACATCGTAAAAGATATGAC+TGG - tig0004829:90304-90323 Msa1341530:three_prime_UTR 30.0%
ACATCGTAAAAGATATGACT+GGG - tig0004829:90305-90324 Msa1341530:three_prime_UTR 30.0%
ACGCATTTACAAAGCTAATT+GGG - tig0004829:90470-90489 Msa1341530:three_prime_UTR 30.0%
! TTACGTAGCCTTGAAAAAAT+TGG + tig0004829:90987-91006 None:intergenic 30.0%
!!! ATTTTTTCAAGGCTACGTAA+AGG - tig0004829:90987-91006 Msa1341530:three_prime_UTR 30.0%
!!! TTTTTTCAAGGCTACGTAAA+GGG - tig0004829:90988-91007 Msa1341530:three_prime_UTR 30.0%
CCCAAAACATATATTGCTTA+TGG - tig0004829:91210-91229 Msa1341530:three_prime_UTR 30.0%
TTCTACATGTAAAGAACACA+AGG + tig0004829:91321-91340 None:intergenic 30.0%
AGATTTATCAGCGATTAGTA+AGG + tig0004829:91360-91379 None:intergenic 30.0%
CGCTGATAAATCTAATAATC+TGG - tig0004829:91367-91386 Msa1341530:three_prime_UTR 30.0%
GGAAGCAAACCAAATAAAAA+AGG + tig0004829:91610-91629 None:intergenic 30.0%
GAAATCATAAGATGAAATGC+TGG + tig0004829:91642-91661 None:intergenic 30.0%
!!! TTCTTTTGTTTTGTGCATCT+GGG + tig0004829:91693-91712 None:intergenic 30.0%
!!! TTTCTTTTGTTTTGTGCATC+TGG + tig0004829:91694-91713 None:intergenic 30.0%
CATGAAATTGTAGCTCATTT+AGG + tig0004829:91757-91776 None:intergenic 30.0%
ACAATTTCATGCCAAAGAAT+TGG - tig0004829:91766-91785 Msa1341530:CDS 30.0%
GATGCAAATTCAAATACATC+AGG - tig0004829:91796-91815 Msa1341530:CDS 30.0%
! TAACAACAGTTCTCTTTTGT+TGG - tig0004829:91942-91961 Msa1341530:CDS 30.0%
TATTATATTGCAGTTGCTGA+TGG - tig0004829:92200-92219 Msa1341530:CDS 30.0%
TATGATCTTTGGTAAGCTTA+CGG + tig0004829:92325-92344 None:intergenic 30.0%
TACCAAAGATCATAATTGTG+TGG - tig0004829:92331-92350 Msa1341530:CDS 30.0%
TACCACACAATTATGATCTT+TGG + tig0004829:92336-92355 None:intergenic 30.0%
AACTGCGAAAAAAAATGTGA+AGG + tig0004829:92503-92522 None:intergenic 30.0%
!!! TCTTTTCTGGTTTTTCTAAC+TGG - tig0004829:92903-92922 Msa1341530:CDS 30.0%
!!! TGGAATTTTTTTTGGGAACA+GGG + tig0004829:93045-93064 None:intergenic 30.0%
!!! TTGGAATTTTTTTTGGGAAC+AGG + tig0004829:93046-93065 None:intergenic 30.0%
! TATTCTTTTCCACAAAGTCC+CGG + tig0004829:89973-89992 None:intergenic 35.0%
GGACTTTGTGGAAAAGAATA+CGG - tig0004829:89973-89992 Msa1341530:three_prime_UTR 35.0%
! GTCACTGCCATTTATAATGT+AGG + tig0004829:90094-90113 None:intergenic 35.0%
GCTACGGTAAAATCCATATA+TGG + tig0004829:90130-90149 None:intergenic 35.0%
! GAAGAGATTTTTCACCATCA+CGG - tig0004829:90258-90277 Msa1341530:three_prime_UTR 35.0%
!!! GATTTTTTGTTGAACCGTGA+TGG + tig0004829:90275-90294 None:intergenic 35.0%
!!! ACCTACTAGTTTTCATTCTC+AGG - tig0004829:90341-90360 Msa1341530:three_prime_UTR 35.0%
!! CACTATTAGCTTTCCATTCT+GGG + tig0004829:90386-90405 None:intergenic 35.0%
!! TCACTATTAGCTTTCCATTC+TGG + tig0004829:90387-90406 None:intergenic 35.0%
GAATGGAAAGCTAATAGTGA+TGG - tig0004829:90387-90406 Msa1341530:three_prime_UTR 35.0%
GACGCATTTACAAAGCTAAT+TGG - tig0004829:90469-90488 Msa1341530:three_prime_UTR 35.0%
TTCCTTCTAACAAGTTTAGC+TGG + tig0004829:90581-90600 None:intergenic 35.0%
GAAAAATCAATCCTGAAGTC+AGG - tig0004829:90598-90617 Msa1341530:three_prime_UTR 35.0%
AGTTATCTTTACTGTCATCC+CGG + tig0004829:90635-90654 None:intergenic 35.0%
CTCATCATCAGATATGTCAA+GGG + tig0004829:90676-90695 None:intergenic 35.0%
TCTCATCATCAGATATGTCA+AGG + tig0004829:90677-90696 None:intergenic 35.0%
AAAACATTTCTCACAACCAC+AGG + tig0004829:90735-90754 None:intergenic 35.0%
! TGTGGTTGTGAGAAATGTTT+TGG - tig0004829:90734-90753 Msa1341530:three_prime_UTR 35.0%
!!! AATGTTTTGGCCAAAACATC+TGG - tig0004829:90747-90766 Msa1341530:three_prime_UTR 35.0%
CAAAACATCTGGTCTAAGTT+GGG - tig0004829:90758-90777 Msa1341530:three_prime_UTR 35.0%
! AGAGGAAACACAAAGTGTTA+AGG - tig0004829:90836-90855 Msa1341530:three_prime_UTR 35.0%
GTCGAATGCATAAAGATAAG+TGG - tig0004829:91010-91029 Msa1341530:three_prime_UTR 35.0%
!! TATGGATTTTCTGAAGAGCT+TGG - tig0004829:91228-91247 Msa1341530:three_prime_UTR 35.0%
! GTCAAGACACATTTGTTGAA+AGG + tig0004829:91523-91542 None:intergenic 35.0%
CATCACATTGTCCAATTCTT+TGG + tig0004829:91780-91799 None:intergenic 35.0%
!! TTAAAAGGAAGAGAGCATCA+GGG + tig0004829:91995-92014 None:intergenic 35.0%
!! TTTAAAAGGAAGAGAGCATC+AGG + tig0004829:91996-92015 None:intergenic 35.0%
! GATGCTCTCTTCCTTTTAAA+TGG - tig0004829:91996-92015 Msa1341530:CDS 35.0%
! TCCTTTTAAATGGAAGATGC+TGG - tig0004829:92006-92025 Msa1341530:CDS 35.0%
ACCAGCATCTTCCATTTAAA+AGG + tig0004829:92010-92029 None:intergenic 35.0%
! TATTATGCCTAATGGATGCT+TGG - tig0004829:92098-92117 Msa1341530:intron 35.0%
! AATTTCAACCTTGTTTCCGA+CGG - tig0004829:92252-92271 Msa1341530:CDS 35.0%
! ATATTTTCCGTCACGACTTT+TGG - tig0004829:92448-92467 Msa1341530:CDS 35.0%
CACAAGTTTACTTAAAGGCA+AGG + tig0004829:92475-92494 None:intergenic 35.0%
TGTTAACTCTCCAGTTCATA+TGG - tig0004829:92535-92554 Msa1341530:CDS 35.0%
GTTAACTCTCCAGTTCATAT+GGG - tig0004829:92536-92555 Msa1341530:CDS 35.0%
TAGAGGGACTAAACGAAATT+TGG - tig0004829:92849-92868 Msa1341530:CDS 35.0%
AGAGGGACTAAACGAAATTT+GGG - tig0004829:92850-92869 Msa1341530:CDS 35.0%
! GGATTTTTATAGGGACATAG+AGG - tig0004829:92871-92890 Msa1341530:CDS 35.0%
ACAGAGATCATATGAGCAAC+CGG + tig0004829:90163-90182 None:intergenic 40.0%
GCCTGAGAATGAAAACTAGT+AGG + tig0004829:90345-90364 None:intergenic 40.0%
! TTAGCTTTCCATTCTGGGAA+GGG + tig0004829:90381-90400 None:intergenic 40.0%
!! ATTAGCTTTCCATTCTGGGA+AGG + tig0004829:90382-90401 None:intergenic 40.0%
CACTAGAAATTACACACCAC+TGG - tig0004829:90524-90543 Msa1341530:three_prime_UTR 40.0%
AAATTACACACCACTGGATG+TGG - tig0004829:90530-90549 Msa1341530:three_prime_UTR 40.0%
TCAGTAATATCCACATCCAG+TGG + tig0004829:90543-90562 None:intergenic 40.0%
TTCTAACAAGTTTAGCTGGC+AGG + tig0004829:90577-90596 None:intergenic 40.0%
!! TGCCAGCTAAACTTGTTAGA+AGG - tig0004829:90576-90595 Msa1341530:three_prime_UTR 40.0%
AATCAATCCTGAAGTCAGGA+CGG - tig0004829:90602-90621 Msa1341530:three_prime_UTR 40.0%
! CCAACTTAGACCAGATGTTT+TGG + tig0004829:90760-90779 None:intergenic 40.0%
CCAAAACATCTGGTCTAAGT+TGG - tig0004829:90757-90776 Msa1341530:three_prime_UTR 40.0%
! TTTGGAACCTGTTTCTCTGA+GGG + tig0004829:90805-90824 None:intergenic 40.0%
TTCCAAAGCGAAGTTGAAAG+AGG - tig0004829:90818-90837 Msa1341530:three_prime_UTR 40.0%
TTCCTCTTTCAACTTCGCTT+TGG + tig0004829:90823-90842 None:intergenic 40.0%
! TGTTAAGGCTGTTGATTGCT+TGG - tig0004829:90851-90870 Msa1341530:three_prime_UTR 40.0%
!! TTGATTGCTTGGATTGGTGT+GGG - tig0004829:90862-90881 Msa1341530:three_prime_UTR 40.0%
TCTTCAAAAGAGGTGGATGA+AGG + tig0004829:91063-91082 None:intergenic 40.0%
GGATCAGTGTAGTCCATATA+CGG + tig0004829:91126-91145 None:intergenic 40.0%
GACTACACTGATCCAAAATC+AGG - tig0004829:91132-91151 Msa1341530:three_prime_UTR 40.0%
TTTGCTAGTAAACTTCCTGC+TGG - tig0004829:91165-91184 Msa1341530:three_prime_UTR 40.0%
!! TATGTTTTGGGTCCCAAATC+TGG + tig0004829:91201-91220 None:intergenic 40.0%
TACATGTAGAAACCTGCTGT+TGG - tig0004829:91330-91349 Msa1341530:three_prime_UTR 40.0%
ACATGTAGAAACCTGCTGTT+GGG - tig0004829:91331-91350 Msa1341530:three_prime_UTR 40.0%
ATGAAATGCTGGGACAAGTA+TGG + tig0004829:91631-91650 None:intergenic 40.0%
!! AGCATTTTTGAAAGCCACAG+TGG - tig0004829:91663-91682 Msa1341530:three_prime_UTR 40.0%
!!! TTTGTTTTGTGCATCTGGGA+AGG + tig0004829:91689-91708 None:intergenic 40.0%
ACCTCATTCTCTCCATTTGT+GGG + tig0004829:91905-91924 None:intergenic 40.0%
GAATGAGGTGTGCAGATTAA+AGG - tig0004829:91916-91935 Msa1341530:CDS 40.0%
!! TAAAAGGAAGAGAGCATCAG+GGG + tig0004829:91994-92013 None:intergenic 40.0%
CATAATACCAGAGGCAGTAA+GGG + tig0004829:92085-92104 None:intergenic 40.0%
TCCATTAGGCATAATACCAG+AGG + tig0004829:92094-92113 None:intergenic 40.0%
AGATAAGGTTACGAGACTCT+TGG + tig0004829:92298-92317 None:intergenic 40.0%
TAAGCTTACGGATGGAGATA+AGG + tig0004829:92313-92332 None:intergenic 40.0%
ATCTTTGGTAAGCTTACGGA+TGG + tig0004829:92321-92340 None:intergenic 40.0%
! GTCGTGACGGAAAATATTTG+AGG + tig0004829:92445-92464 None:intergenic 40.0%
TCTCCAGTTCATATGGGAAA+GGG - tig0004829:92542-92561 Msa1341530:CDS 40.0%
! ATGTTTTGCGTCGTGACTTT+TGG + tig0004829:92801-92820 None:intergenic 40.0%
AAGTCACGACGCAAAACATT+TGG - tig0004829:92802-92821 Msa1341530:CDS 40.0%
AGTCACGACGCAAAACATTT+GGG - tig0004829:92803-92822 Msa1341530:CDS 40.0%
! GAGGACTGTACTATCTTTTC+TGG - tig0004829:92890-92909 Msa1341530:CDS 40.0%
AGTTGTTGTCTTCCACACTT+CGG - tig0004829:92931-92950 Msa1341530:CDS 40.0%
TGAGCTAAAGCCAAATTGTG+AGG + tig0004829:92980-92999 None:intergenic 40.0%
!! TGGCTTTAGCTCAAATGTCT+CGG - tig0004829:92987-93006 Msa1341530:CDS 40.0%
! CACAACAAGGCTTTGTCACT+TGG - tig0004829:90014-90033 Msa1341530:three_prime_UTR 45.0%
! AACAAGGCTTTGTCACTTGG+AGG - tig0004829:90017-90036 Msa1341530:three_prime_UTR 45.0%
TCATATGAGCAACCGGTGTT+GGG + tig0004829:90156-90175 None:intergenic 45.0%
ATCATATGAGCAACCGGTGT+TGG + tig0004829:90157-90176 None:intergenic 45.0%
TGCTGTCAAGAGCTCAGAAA+GGG - tig0004829:90189-90208 Msa1341530:three_prime_UTR 45.0%
!! TCAGATATGTCAAGGGCGTT+TGG + tig0004829:90669-90688 None:intergenic 45.0%
ATGAGATCAAGCACTTCCAG+AGG - tig0004829:90691-90710 Msa1341530:three_prime_UTR 45.0%
! TGGTCTAAGTTGGGAACCAA+TGG - tig0004829:90767-90786 Msa1341530:three_prime_UTR 45.0%
GTTGGGAACCAATGGTTATG+TGG - tig0004829:90775-90794 Msa1341530:three_prime_UTR 45.0%
GGAACCAATGGTTATGTGGA+GGG - tig0004829:90779-90798 Msa1341530:three_prime_UTR 45.0%
!! CTTTGGAACCTGTTTCTCTG+AGG + tig0004829:90806-90825 None:intergenic 45.0%
! AGGCTGTTGATTGCTTGGAT+TGG - tig0004829:90856-90875 Msa1341530:three_prime_UTR 45.0%
!! GTTGATTGCTTGGATTGGTG+TGG - tig0004829:90861-90880 Msa1341530:three_prime_UTR 45.0%
!! TGATTGCTTGGATTGGTGTG+GGG - tig0004829:90863-90882 Msa1341530:three_prime_UTR 45.0%
TTTACACGGCTTTGCTTCAC+AGG - tig0004829:90945-90964 Msa1341530:three_prime_UTR 45.0%
TGGCTCGTTGAAACCAGATT+TGG - tig0004829:91185-91204 Msa1341530:three_prime_UTR 45.0%
GGCTCGTTGAAACCAGATTT+GGG - tig0004829:91186-91205 Msa1341530:three_prime_UTR 45.0%
GTTTGGTCACAGAATCTCCT+CGG + tig0004829:91254-91273 None:intergenic 45.0%
TTCTGTGACCAAACTGCACT+TGG - tig0004829:91260-91279 Msa1341530:three_prime_UTR 45.0%
AGACACATCCAAGTGCAGTT+TGG + tig0004829:91271-91290 None:intergenic 45.0%
GATGCGGTAATTTCTGCTCT+AGG - tig0004829:91291-91310 Msa1341530:three_prime_UTR 45.0%
GAGTGCATATGACCCACAAA+TGG - tig0004829:91890-91909 Msa1341530:CDS 45.0%
ACCCACAAATGGAGAGAATG+AGG - tig0004829:91901-91920 Msa1341530:CDS 45.0%
CACCTCATTCTCTCCATTTG+TGG + tig0004829:91906-91925 None:intergenic 45.0%
!! AAAAGGAAGAGAGCATCAGG+GGG + tig0004829:91993-92012 None:intergenic 45.0%
!! ATGTCCGGTGTCACTCATAT+GGG - tig0004829:92036-92055 Msa1341530:CDS 45.0%
GCATAATACCAGAGGCAGTA+AGG + tig0004829:92086-92105 None:intergenic 45.0%
GCCTCTGGTATTATGCCTAA+TGG - tig0004829:92090-92109 Msa1341530:intron 45.0%
CCAGAATCCAAGCATCCATT+AGG + tig0004829:92108-92127 None:intergenic 45.0%
! CCTAATGGATGCTTGGATTC+TGG - tig0004829:92105-92124 Msa1341530:intron 45.0%
GCTGATGGTTCTTGTGTTGT+TGG - tig0004829:92215-92234 Msa1341530:CDS 45.0%
CTCTCCAGTTCATATGGGAA+AGG - tig0004829:92541-92560 Msa1341530:CDS 45.0%
CTCCAGTTCATATGGGAAAG+GGG - tig0004829:92543-92562 Msa1341530:CDS 45.0%
AACCCCTTTCCCATATGAAC+TGG + tig0004829:92548-92567 None:intergenic 45.0%
GTCACGACGCAAAACATTTG+GGG - tig0004829:92804-92823 Msa1341530:CDS 45.0%
CTTTGACTAAGACCGAAGTG+TGG + tig0004829:92946-92965 None:intergenic 45.0%
CACTCTTCTGCCTCACAATT+TGG - tig0004829:92967-92986 Msa1341530:CDS 45.0%
CAAAGTCCCGGACAAACCAA+AGG + tig0004829:89961-89980 None:intergenic 50.0%
!! TTGGTTTGTCCGGGACTTTG+TGG - tig0004829:89961-89980 Msa1341530:three_prime_UTR 50.0%
! CATATGAGCAACCGGTGTTG+GGG + tig0004829:90155-90174 None:intergenic 50.0%
GTGCTGTCAAGAGCTCAGAA+AGG - tig0004829:90188-90207 Msa1341530:three_prime_UTR 50.0%
TGTTCTCTCCCTTCCCAGAA+TGG - tig0004829:90370-90389 Msa1341530:three_prime_UTR 50.0%
!! TTCCAGAGGCACTGGATGAA+GGG - tig0004829:90705-90724 Msa1341530:three_prime_UTR 50.0%
GGGAACCAATGGTTATGTGG+AGG - tig0004829:90778-90797 Msa1341530:three_prime_UTR 50.0%
CAAGCGCTCTTCAAAAGAGG+TGG + tig0004829:91070-91089 None:intergenic 50.0%
AGGCAAGCGCTCTTCAAAAG+AGG + tig0004829:91073-91092 None:intergenic 50.0%
!!! CTTTTGAAGAGCGCTTGCCT+AGG - tig0004829:91073-91092 Msa1341530:three_prime_UTR 50.0%
AGGAATTCAGCACCATGCCT+AGG + tig0004829:91093-91112 None:intergenic 50.0%
! CCATATACGGAAGTGCAGCA+AGG + tig0004829:91113-91132 None:intergenic 50.0%
CCTTGCTGCACTTCCGTATA+TGG - tig0004829:91110-91129 Msa1341530:three_prime_UTR 50.0%
!! TTTTCTGAAGAGCTTGGCCG+AGG - tig0004829:91234-91253 Msa1341530:three_prime_UTR 50.0%
GCACTTGGATGTGTCTGATG+CGG - tig0004829:91275-91294 Msa1341530:three_prime_UTR 50.0%
TAGTAAGGACTCCCAACAGC+AGG + tig0004829:91345-91364 None:intergenic 50.0%
!! AAAGGAAGAGAGCATCAGGG+GGG + tig0004829:91992-92011 None:intergenic 50.0%
GATGCTGGTGAGATCATGTC+CGG - tig0004829:92021-92040 Msa1341530:CDS 50.0%
!! CATGTCCGGTGTCACTCATA+TGG - tig0004829:92035-92054 Msa1341530:CDS 50.0%
GTCACCCATATGAGTGACAC+CGG + tig0004829:92043-92062 None:intergenic 50.0%
ACATCTAGCCGTCGGAAACA+AGG + tig0004829:92263-92282 None:intergenic 50.0%
TGTGTAGCACATCTAGCCGT+CGG + tig0004829:92271-92290 None:intergenic 50.0%
GCAAGGACCAAAAGTCGTGA+CGG + tig0004829:92458-92477 None:intergenic 50.0%
AATGCTGCCGTCCTGACTTC+AGG + tig0004829:90612-90631 None:intergenic 55.0%
AAGTCAGGACGGCAGCATTC+CGG - tig0004829:90613-90632 Msa1341530:three_prime_UTR 55.0%
! TCAAGCACTTCCAGAGGCAC+TGG - tig0004829:90697-90716 Msa1341530:three_prime_UTR 55.0%
!! CTTCCAGAGGCACTGGATGA+AGG - tig0004829:90704-90723 Msa1341530:three_prime_UTR 55.0%
CTGGATGAAGGGAGAACCTG+TGG - tig0004829:90716-90735 Msa1341530:three_prime_UTR 55.0%
AGGGCCCTCCACATAACCAT+TGG + tig0004829:90786-90805 None:intergenic 55.0%
! TCTGGTTTCAACGAGCCAGC+AGG + tig0004829:91183-91202 None:intergenic 55.0%
TCTCGATCCCTTACTGCCTC+TGG - tig0004829:92075-92094 Msa1341530:intron 55.0%
! TGTCTGAGACGTCGTGAGAC+TGG + tig0004829:92143-92162 None:intergenic 55.0%
TACCGTAGCTGCCCCAACAC+CGG - tig0004829:90141-90160 Msa1341530:three_prime_UTR 60.0%
! AACCGGTGTTGGGGCAGCTA+CGG + tig0004829:90146-90165 None:intergenic 60.0%
CTCAGAAAGGGCTGCCAACC+TGG - tig0004829:90201-90220 Msa1341530:three_prime_UTR 60.0%
AGAAAGGGCTGCCAACCTGG+AGG - tig0004829:90204-90223 Msa1341530:three_prime_UTR 60.0%
!! CCACGCTGCTTTGGAGGACA+TGG + tig0004829:90420-90439 None:intergenic 60.0%
CCATGTCCTCCAAAGCAGCG+TGG - tig0004829:90417-90436 Msa1341530:three_prime_UTR 60.0%
TGTCCTCCAAAGCAGCGTGG+AGG - tig0004829:90420-90439 Msa1341530:three_prime_UTR 60.0%
! CAACCTCCACGCTGCTTTGG+AGG + tig0004829:90426-90445 None:intergenic 60.0%
CCAAAGCAGCGTGGAGGTTG+CGG - tig0004829:90426-90445 Msa1341530:three_prime_UTR 60.0%
AGTCAGGACGGCAGCATTCC+GGG - tig0004829:90614-90633 Msa1341530:three_prime_UTR 60.0%
CTCCCTTCATCCAGTGCCTC+TGG + tig0004829:90710-90729 None:intergenic 60.0%
TGGAGGGCCCTCAGAGAAAC+AGG - tig0004829:90795-90814 Msa1341530:three_prime_UTR 60.0%
!! GAAGAGCGCTTGCCTAGGCA+TGG - tig0004829:91078-91097 Msa1341530:three_prime_UTR 60.0%
TGCATCTGGGAAGGCCACTG+TGG + tig0004829:91680-91699 None:intergenic 60.0%
!! AGAGAGCATCAGGGGGGAGA+GGG + tig0004829:91986-92005 None:intergenic 60.0%
!! AAGAGAGCATCAGGGGGGAG+AGG + tig0004829:91987-92006 None:intergenic 60.0%
CTGAGACGTCGTGAGACTGG+TGG + tig0004829:92140-92159 None:intergenic 60.0%
! CTGCCAACCTGGAGGCATGG+AGG - tig0004829:90212-90231 Msa1341530:three_prime_UTR 65.0%
CAGCCTCCATGCCTCCAGGT+TGG + tig0004829:90218-90237 None:intergenic 65.0%
! CAACCTGGAGGCATGGAGGC+TGG - tig0004829:90216-90235 Msa1341530:three_prime_UTR 65.0%
GTTCCAGCCTCCATGCCTCC+AGG + tig0004829:90222-90241 None:intergenic 65.0%
CCGCAACCTCCACGCTGCTT+TGG + tig0004829:90429-90448 None:intergenic 65.0%
GGGCTGCCAACCTGGAGGCA+TGG - tig0004829:90209-90228 Msa1341530:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
tig0004829 gene 89955 93083 89955 ID=Msa1341530;Name=Msa1341530
tig0004829 mRNA 89955 93083 89955 ID=Msa1341530-mRNA-1;Parent=Msa1341530;Name=Msa1341530-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|1|0.5|1|1|1|2|1745|433
tig0004829 exon 89955 92071 89955 ID=Msa1341530-mRNA-1:exon:3262;Parent=Msa1341530-mRNA-1
tig0004829 exon 92154 93083 92154 ID=Msa1341530-mRNA-1:exon:3261;Parent=Msa1341530-mRNA-1
tig0004829 CDS 92154 93083 92154 ID=Msa1341530-mRNA-1:cds;Parent=Msa1341530-mRNA-1
tig0004829 CDS 91700 92071 91700 ID=Msa1341530-mRNA-1:cds;Parent=Msa1341530-mRNA-1
tig0004829 three_prime_UTR 89955 91699 89955 ID=Msa1341530-mRNA-1:three_prime_utr;Parent=Msa1341530-mRNA-1
Gene Sequence

>Msa1341530

ATGCCTTTGGTTTGTCCGGGACTTTGTGGAAAAGAATACGGTCCTTCTCATAAATATTTCACAACAAGGCTTTGTCACTTGGAGGCCTTGATTGTTTTACCTTTTCATAATATCCTATTTGATCCTAAACTGAATGCCTACATTATAAATGGCAGTGACAATTGCAATACATCCATATATGGATTTTACCGTAGCTGCCCCAACACCGGTTGCTCATATGATCTCTGTCTCGTGTGCTGTCAAGAGCTCAGAAAGGGCTGCCAACCTGGAGGCATGGAGGCTGGAACGTCTCATGAAAAATTTGAAGAGATTTTTCACCATCACGGTTCAACAAAAAATCGGAGTAAAATACATCGTAAAAGATATGACTGGGAGAGCGAACTTGCACCTACTAGTTTTCATTCTCAGGCTGACATGTTCTCTCCCTTCCCAGAATGGAAAGCTAATAGTGATGGTAACATTCCATGTCCTCCAAAGCAGCGTGGAGGTTGCGGTACTGCATTACTAGAACTGAGACGCATTTACAAAGCTAATTGGGTAGCAAAACTACTAAATAATGCTGAGGATCTCACTAGAAATTACACACCACTGGATGTGGATATTACTGATAAGTGTTCTTCCTGCCAGCTAAACTTGTTAGAAGGAAAAATCAATCCTGAAGTCAGGACGGCAGCATTCCGGGATGACAGTAAAGATAACTTCTTATATAGTCCAAACGCCCTTGACATATCTGATGATGAGATCAAGCACTTCCAGAGGCACTGGATGAAGGGAGAACCTGTGGTTGTGAGAAATGTTTTGGCCAAAACATCTGGTCTAAGTTGGGAACCAATGGTTATGTGGAGGGCCCTCAGAGAAACAGGTTCCAAAGCGAAGTTGAAAGAGGAAACACAAAGTGTTAAGGCTGTTGATTGCTTGGATTGGTGTGGGGTTGAAATTAATATACACCAATTTTTTCAAGGCTACGTAAAGGGTCGAATGCATAAAGATAAGTGGCCAGAAATGTTGAAATTGAAAGATTGGCCTTCATCCACCTCTTTTGAAGAGCGCTTGCCTAGGCATGGTGCTGAATTCCTTGCTGCACTTCCGTATATGGACTACACTGATCCAAAATCAGGTCTTTTAAATTTTGCTAGTAAACTTCCTGCTGGCTCGTTGAAACCAGATTTGGGACCCAAAACATATATTGCTTATGGATTTTCTGAAGAGCTTGGCCGAGGAGATTCTGTGACCAAACTGCACTTGGATGTGTCTGATGCGGTAATTTCTGCTCTAGGAAATCCTTGTGTTCTTTACATGTAG
Protein sequence

>Msa1341530

MPLVCPGLCGKEYGPSHKYFTTRLCHLEALIVLPFHNILFDPKLNAYIINGSDNCNTSIYGFYRSCPNTGCSYDLCLVCCQELRKGCQPGGMEAGTSHEKFEEIFHHHGSTKNRSKIHRKRYDWESELAPTSFHSQADMFSPFPEWKANSDGNIPCPPKQRGGCGTALLELRRIYKANWVAKLLNNAEDLTRNYTPLDVDITDKCSSCQLNLLEGKINPEVRTAAFRDDSKDNFLYSPNALDISDDEIKHFQRHWMKGEPVVVRNVLAKTSGLSWEPMVMWRALRETGSKAKLKEETQSVKAVDCLDWCGVEINIHQFFQGYVKGRMHKDKWPEMLKLKDWPSSTSFEERLPRHGAEFLAALPYMDYTDPKSGLLNFASKLPAGSLKPDLGPKTYIAYGFSEELGRGDSVTKLHLDVSDAVISALGNPCVLYM*