AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0527610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527610 MtrunA17_Chr2g0290411 96.920 552 17 0 1 552 1 552 0.0 1077
Msa0527610 MtrunA17_Chr4g0076251 67.140 563 161 4 6 552 19 573 0.0 695
Msa0527610 MtrunA17_Chr8g0391771 47.263 548 257 9 13 545 57 587 1.52e-151 448
Msa0527610 MtrunA17_Chr1g0161371 47.005 551 254 9 13 545 52 582 2.82e-150 444
Msa0527610 MtrunA17_Chr8g0344311 47.928 555 241 9 13 545 53 581 8.39e-149 441
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527610 AT4G17220.1 56.154 520 182 7 15 529 8 486 6.16e-173 499
Msa0527610 AT1G68060.1 49.180 549 243 11 13 543 66 596 1.52e-157 464
Msa0527610 AT1G24764.1 47.541 549 256 7 13 545 74 606 2.10e-157 464
Msa0527610 AT1G24764.3 47.227 559 262 8 4 545 123 665 1.27e-155 461
Msa0527610 AT2G01750.2 46.691 559 266 7 4 546 63 605 9.43e-153 452
Msa0527610 AT2G01750.1 46.691 559 266 7 4 546 63 605 1.39e-152 451
Msa0527610 AT1G14840.1 46.863 542 248 7 13 536 49 568 5.66e-151 446
Msa0527610 AT1G14840.2 44.649 542 245 8 13 536 49 553 1.72e-135 406
Msa0527610 AT1G24764.2 48.188 469 211 7 93 545 1 453 1.77e-135 402

Find 105 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTCAGTTTCTTGACTTCT+AGG 0.102098 3_4:+82064996 None:intergenic
TTTCCTTTGGTCTTCTATTT+TGG 0.106408 3_4:+82066199 None:intergenic
TTTCCTTTGGTATCCAATTT+TGG 0.142874 3_4:+82066304 None:intergenic
CTTAGCTTCAGTTGCCCTTA+TGG 0.199525 3_4:+82065325 None:intergenic
ATTCTTTATGAAGAGAAAAT+TGG 0.212662 3_4:-82062860 Msa0527610:three_prime_UTR
GGTAGAACCATATTTCATTT+TGG 0.221595 3_4:+82063629 None:intergenic
TACCTTAATTTCTTCATCTT+TGG 0.231823 3_4:+82063362 None:intergenic
TTCCAAAAGCCAAACATAAA+AGG 0.248082 3_4:-82063696 Msa0527610:CDS
ACACTTACCATCACCAAAAT+TGG 0.257334 3_4:-82066317 Msa0527610:five_prime_UTR
GAAGTTCAAACTTCTCTAAA+AGG 0.264788 3_4:-82062988 Msa0527610:intron
TCTTCTAACCATTGCCTAAC+AGG 0.277147 3_4:+82064076 None:intergenic
CACCAAAGATGAAGAAATTA+AGG 0.291999 3_4:-82063364 Msa0527610:intron
ATATTCGATTTATCAGCTTT+TGG 0.300457 3_4:+82063801 None:intergenic
AGCATAACCAAAATGAAATA+TGG 0.322617 3_4:-82063636 Msa0527610:CDS
TTTACCAAGAAAGAAGAAAA+TGG 0.324121 3_4:-82066042 Msa0527610:exon
CCTCAAGTTCATGAATTGTT+TGG 0.350831 3_4:+82064393 None:intergenic
TCTACAGATTACAGCACTTC+AGG 0.391041 3_4:-82064726 Msa0527610:intron
GAAAGCACTGATGTGGTCTC+TGG 0.402489 3_4:-82063462 Msa0527610:CDS
GTGATAAGGTCATGCCTGTT+AGG 0.415652 3_4:-82064090 Msa0527610:CDS
TCAGGAAGATAAGAAAGCTT+TGG 0.418519 3_4:-82064708 Msa0527610:CDS
ACAATGGTGGATTGAGAAAC+AGG 0.418721 3_4:-82063761 Msa0527610:CDS
AAAAGGCAACATAGACAGTA+TGG 0.427289 3_4:-82063679 Msa0527610:CDS
TAGCATACTCCATTTGTTGT+TGG 0.431105 3_4:-82066260 Msa0527610:five_prime_UTR
AGATCTCGATCCGTCTCTTC+AGG 0.431500 3_4:+82064576 None:intergenic
ATCTCCAACACAACAACATC+TGG 0.433211 3_4:+82065990 None:intergenic
AAAAGCAGAATCACAATTGA+AGG 0.437230 3_4:-82063987 Msa0527610:intron
TATGGCTGGGAACCGAAAAC+CGG 0.449172 3_4:-82063661 Msa0527610:CDS
AAGATTACACACAGATCAAA+AGG 0.452964 3_4:-82064921 Msa0527610:CDS
GAGAAATGAAGTAAGTAAGA+TGG 0.460243 3_4:-82065129 Msa0527610:CDS
ATGGTGAAATCAAGGCCATA+AGG 0.461955 3_4:-82065340 Msa0527610:CDS
ACAGGAGGAGAACAAAATCT+TGG 0.462576 3_4:-82064459 Msa0527610:intron
AGAAGGCTTAAAGCAATTCT+CGG 0.473398 3_4:-82063850 Msa0527610:CDS
GAGGAGCTCATCTTATCAAA+TGG 0.475247 3_4:-82064374 Msa0527610:CDS
CGCAACAGTTGCAATTCTGT+TGG 0.479391 3_4:+82064135 None:intergenic
CATCAATAAAATCCGATGAT+AGG 0.480394 3_4:-82063021 Msa0527610:CDS
TTTAGAGTCTTCATCAGCAT+TGG 0.483845 3_4:+82063506 None:intergenic
TGGAGATACTGAAAATGCAT+TGG 0.489587 3_4:+82063821 None:intergenic
AAAACACCAACAACAAATGA+TGG 0.495818 3_4:+82066359 None:intergenic
TCTCAGACTCTGTAAGTTAG+TGG 0.498944 3_4:+82062754 None:intergenic
TCACAAAAGTAGAACACCTA+TGG 0.501557 3_4:-82066114 Msa0527610:five_prime_UTR
TAAAAGCCATCATTTGTTGT+TGG 0.502135 3_4:-82066365 Msa0527610:five_prime_UTR
GGCAACATAGACAGTATGGC+TGG 0.502574 3_4:-82063675 Msa0527610:CDS
TTTCCAACGGTAGATCCTCT+TGG 0.502837 3_4:+82063726 None:intergenic
CATTTGCAAAACAAACTCAT+AGG 0.508565 3_4:-82065963 Msa0527610:intron
CAAACCAGATGTTGTTGTGT+TGG 0.510088 3_4:-82065994 Msa0527610:CDS
ATGGAAAGATGAAAGTGATA+AGG 0.511209 3_4:-82064104 Msa0527610:CDS
CAAAGGCTATGGAAGTAGAA+TGG 0.511214 3_4:-82063087 Msa0527610:CDS
CTTTATGAAGAGAAAATTGG+AGG 0.512076 3_4:-82062857 Msa0527610:three_prime_UTR
CAACTGTTGCGGCTAATGAA+TGG 0.512914 3_4:-82064123 Msa0527610:CDS
AACATGCCATGGTGAAATCA+AGG 0.522834 3_4:-82065348 Msa0527610:CDS
CTTCTCTGTATGTACAGAGT+TGG 0.523530 3_4:+82062730 None:intergenic
TAAGTGTACTGTTGAGGCTA+AGG 0.523957 3_4:+82066228 None:intergenic
TGAGGCATTGACAAAGGCTA+TGG 0.528361 3_4:-82063098 Msa0527610:CDS
TGCGAGACTAAGACTTAAAG+AGG 0.531452 3_4:-82065105 Msa0527610:CDS
GGCGTGATGACACTTTCAAA+TGG 0.532270 3_4:+82064884 None:intergenic
TAAAATTTCAGGAGGAGAAG+AGG 0.539106 3_4:-82064195 Msa0527610:intron
CCAAACAATTCATGAACTTG+AGG 0.539948 3_4:-82064393 Msa0527610:CDS
AACAAATGAAGTATGATCAC+TGG 0.540299 3_4:+82066075 None:intergenic
AAGCCACCGGCAAAAGATTG+TGG 0.540851 3_4:-82064432 Msa0527610:CDS
TATATATAGTATTATTCCAT+AGG 0.547203 3_4:+82066098 None:intergenic
AGAAGAAAGAAAGATTATGC+AGG 0.548152 3_4:-82064059 Msa0527610:CDS
CACTAGAGAGGGAATTAGCA+AGG 0.557388 3_4:-82064171 Msa0527610:CDS
CAACAGAATTGCAACTGTTG+CGG 0.557551 3_4:-82064134 Msa0527610:CDS
TTAAGTTTCGTAACGAACAA+TGG 0.569896 3_4:-82063777 Msa0527610:CDS
CAATAAAATCCGATGATAGG+AGG 0.573485 3_4:-82063018 Msa0527610:CDS
GAGACGGATCGAGATCTGCC+AGG 0.577223 3_4:-82064570 Msa0527610:intron
TGGTGAAATCAAGGCCATAA+GGG 0.577785 3_4:-82065339 Msa0527610:CDS
ATCTTAATCTCGTCTTCAAG+AGG 0.579230 3_4:+82064863 None:intergenic
TGATGGAAAGTGCCCTATTG+AGG 0.579242 3_4:+82066134 None:intergenic
GAAAATGGTTGTCAATGAAG+AGG 0.581609 3_4:-82066027 Msa0527610:exon
AGACGAAAAGAAAGATGCGT+TGG 0.582689 3_4:-82064975 Msa0527610:CDS
AACTGAAGCTAAGAAAGATA+AGG 0.586496 3_4:-82065315 Msa0527610:CDS
GCTCACAAAGTCGAAAGAGT+TGG 0.587191 3_4:-82064681 Msa0527610:CDS
GAAAGATAAGGCCATAGAAG+AGG 0.588351 3_4:-82065303 Msa0527610:intron
ACAACATCTGGTTTGACAAG+AGG 0.589315 3_4:+82066002 None:intergenic
TTATGCAGGCAGAGATGCAA+AGG 0.590511 3_4:-82064045 Msa0527610:CDS
AGGAGAAGAGGACACTAGAG+AGG 0.591941 3_4:-82064183 Msa0527610:CDS
CGCAGGATAAACTGAAGCTG+AGG 0.593606 3_4:-82063887 Msa0527610:intron
AAAACTTTGACCTGAAGAGA+CGG 0.598972 3_4:-82064586 Msa0527610:CDS
ATGGCTGGGAACCGAAAACC+GGG 0.599697 3_4:-82063660 Msa0527610:CDS
AATGAACTTGCAACATGCCA+TGG 0.604754 3_4:-82065359 Msa0527610:CDS
AGGTCATGCCTGTTAGGCAA+TGG 0.612732 3_4:-82064084 Msa0527610:CDS
GAAAGTTGAGGCATTGACAA+AGG 0.615355 3_4:-82063104 Msa0527610:CDS
TTATGGCCTTGATTTCACCA+TGG 0.621711 3_4:+82065342 None:intergenic
TCACCAAAATTGGATACCAA+AGG 0.622755 3_4:-82066307 Msa0527610:five_prime_UTR
TAACCAAAATAGAAGACCAA+AGG 0.624121 3_4:-82066202 Msa0527610:five_prime_UTR
AAGATAAGAAAGCTTTGGAA+CGG 0.627349 3_4:-82064703 Msa0527610:CDS
TGATTTAGAAAGCACTGATG+TGG 0.627887 3_4:-82063469 Msa0527610:CDS
AGTTTCGTAACGAACAATGG+TGG 0.630214 3_4:-82063774 Msa0527610:CDS
CAACCAAGAGGATCTACCGT+TGG 0.630663 3_4:-82063729 Msa0527610:CDS
ATAATCACGAATGAGATTAG+CGG 0.637427 3_4:+82064346 None:intergenic
AAATCTTGGAGAAAAGCCAC+CGG 0.637665 3_4:-82064445 Msa0527610:CDS
TTATGGTAAGTGTACTGTTG+AGG 0.644306 3_4:+82066222 None:intergenic
GCAACATAGACAGTATGGCT+GGG 0.648667 3_4:-82063674 Msa0527610:CDS
TGGCATTGCTTGAAGCAGAG+AGG 0.652208 3_4:-82064661 Msa0527610:CDS
TTGGAACAAAGTGTTTCCAA+CGG 0.656799 3_4:+82063713 None:intergenic
ATCACGAATGAGATTAGCGG+TGG 0.659965 3_4:+82064349 None:intergenic
GGAGAAGAGGACACTAGAGA+GGG 0.660251 3_4:-82064182 Msa0527610:CDS
AATGAGATACAGGTGAACAC+AGG 0.676366 3_4:-82063540 Msa0527610:CDS
TGATGGTAAGTGTACTGTTG+AGG 0.679865 3_4:+82066327 None:intergenic
GATGCTCACAAAGAAAGTTG+AGG 0.680066 3_4:-82063116 Msa0527610:CDS
ACTAGAGAGGGAATTAGCAA+GGG 0.681716 3_4:-82064170 Msa0527610:CDS
GATTAAGATGTATAGAACTG+AGG 0.694125 3_4:-82064849 Msa0527610:intron
AGGTCTACATCACAACCAAG+AGG 0.700161 3_4:-82063741 Msa0527610:CDS
TGATTCTGCAGCATATTGTG+CGG 0.724358 3_4:+82064952 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGGTATTTAAAAAAATAA+AGG - chr3_4:82063365-82063384 Msa0527610:CDS 10.0%
!!! TAATTTATTTTTTTCTATGT+AGG - chr3_4:82065098-82065117 Msa0527610:CDS 10.0%
!!! TATATAAAGTATTTTTCCTT+TGG + chr3_4:82062879-82062898 None:intergenic 15.0%
!! TATATATAGTATTATTCCAT+AGG + chr3_4:82062967-82062986 None:intergenic 15.0%
!! TTAAAAAAATCAATAGATCA+AGG - chr3_4:82063544-82063563 Msa0527610:CDS 15.0%
!! TAAAAAAATCAATAGATCAA+GGG - chr3_4:82063545-82063564 Msa0527610:CDS 15.0%
!!! CTATTTTTACTCCTTATTTT+TGG - chr3_4:82063243-82063262 Msa0527610:intron 20.0%
!!! TTTCTTTTACACATTAACAA+TGG + chr3_4:82063410-82063429 None:intergenic 20.0%
!! AACAAATAATGTTCTAACTT+TGG + chr3_4:82063839-82063858 None:intergenic 20.0%
!!! CATAGAATTTATCATTGTTT+TGG + chr3_4:82064012-82064031 None:intergenic 20.0%
!! TAAAAAAAGAAGTCAGATAA+CGG + chr3_4:82065820-82065839 None:intergenic 20.0%
!!! TTTAGTTCTATGTAACAAAA+GGG + chr3_4:82065906-82065925 None:intergenic 20.0%
!! ATTCTTTATGAAGAGAAAAT+TGG - chr3_4:82066202-82066221 Msa0527610:five_prime_UTR 20.0%
!! ATACTATAGTGTTTTTCCTT+TGG + chr3_4:82062774-82062793 None:intergenic 25.0%
! ACAAAAATACCAACAACAAA+TGG + chr3_4:82062814-82062833 None:intergenic 25.0%
! TTTACCAAGAAAGAAGAAAA+TGG - chr3_4:82063020-82063039 Msa0527610:CDS 25.0%
! ATTTGCTTCATCATTTGATT+AGG - chr3_4:82063152-82063171 Msa0527610:intron 25.0%
!!! TGCACTTTTTTTTTATCGTA+AGG - chr3_4:82063304-82063323 Msa0527610:intron 25.0%
!! TTAAATACCTTTTGTTACCT+TGG + chr3_4:82063357-82063376 None:intergenic 25.0%
! AACTAGTGACAATTTATTCA+TGG - chr3_4:82063489-82063508 Msa0527610:CDS 25.0%
!! ATCACAGTTTTCTTTGAATA+TGG - chr3_4:82063604-82063623 Msa0527610:CDS 25.0%
! AAAAACAAATACCTCTTCTA+TGG + chr3_4:82063773-82063792 None:intergenic 25.0%
! GTTAGTGTTATCATCTTTAA+AGG + chr3_4:82064306-82064325 None:intergenic 25.0%
! AACATAAAAAGATATATGCC+TGG + chr3_4:82064513-82064532 None:intergenic 25.0%
! ATAGAAACTATACACGAAAA+TGG + chr3_4:82064537-82064556 None:intergenic 25.0%
! TGTATAGTTTCTATATCGAA+CGG - chr3_4:82064543-82064562 Msa0527610:intron 25.0%
!! TTATACAACTTTTCATGAAC+AGG - chr3_4:82064585-82064604 Msa0527610:CDS 25.0%
!!! TGGTTTTAGCATAAAATTTC+AGG - chr3_4:82064856-82064875 Msa0527610:CDS 25.0%
!! TTTTAGCATAAAATTTCAGG+AGG - chr3_4:82064859-82064878 Msa0527610:CDS 25.0%
!! ATATTCGATTTATCAGCTTT+TGG + chr3_4:82065264-82065283 None:intergenic 25.0%
! AGCATAACCAAAATGAAATA+TGG - chr3_4:82065426-82065445 Msa0527610:intron 25.0%
!!! ACCTTTTTTCAACACATTTT+CGG + chr3_4:82065457-82065476 None:intergenic 25.0%
!! ATGTGTTGAAAAAAGGTATA+TGG - chr3_4:82065460-82065479 Msa0527610:intron 25.0%
!! TGTGTTGAAAAAAGGTATAT+GGG - chr3_4:82065461-82065480 Msa0527610:intron 25.0%
!! TCAAGAAACAAATTTTCTGA+TGG - chr3_4:82065486-82065505 Msa0527610:intron 25.0%
! TGAAAAAGAAAATGAGATAC+AGG - chr3_4:82065512-82065531 Msa0527610:intron 25.0%
! AAAAAGAAGTCATCAATTTG+AGG - chr3_4:82065643-82065662 Msa0527610:intron 25.0%
! TACCTTAATTTCTTCATCTT+TGG + chr3_4:82065703-82065722 None:intergenic 25.0%
!!! CTTTAGTTCTATGTAACAAA+AGG + chr3_4:82065907-82065926 None:intergenic 25.0%
! AGGTTAACTATAGAAGTAAA+AGG + chr3_4:82066136-82066155 None:intergenic 25.0%
!! GTAATTTTATAGCATTGTTC+AGG + chr3_4:82066156-82066175 None:intergenic 25.0%
! AATGCTATAAAATTACTGCA+GGG - chr3_4:82066160-82066179 Msa0527610:five_prime_UTR 25.0%
!! TAAAAGCCATCATTTGTTGT+TGG - chr3_4:82062697-82062716 Msa0527610:three_prime_UTR 30.0%
AAAACACCAACAACAAATGA+TGG + chr3_4:82062706-82062725 None:intergenic 30.0%
! TTTCCTTTGGTATCCAATTT+TGG + chr3_4:82062761-82062780 None:intergenic 30.0%
!!! TTGGTCTTCTATTTTGGTTA+TGG + chr3_4:82062860-82062879 None:intergenic 30.0%
TAACCAAAATAGAAGACCAA+AGG - chr3_4:82062860-82062879 Msa0527610:three_prime_UTR 30.0%
!! TTTCCTTTGGTCTTCTATTT+TGG + chr3_4:82062866-82062885 None:intergenic 30.0%
! TTTTTGTACTTAGCCTCAAT+AGG - chr3_4:82062915-82062934 Msa0527610:intron 30.0%
! TTTTGTACTTAGCCTCAATA+GGG - chr3_4:82062916-82062935 Msa0527610:intron 30.0%
AACAAATGAAGTATGATCAC+TGG + chr3_4:82062990-82063009 None:intergenic 30.0%
! ACAACCATTTTCTTCTTTCT+TGG + chr3_4:82063027-82063046 None:intergenic 30.0%
CATTTGCAAAACAAACTCAT+AGG - chr3_4:82063099-82063118 Msa0527610:CDS 30.0%
AACACCAATGGAAAATTAGA+TGG - chr3_4:82063188-82063207 Msa0527610:intron 30.0%
! TTTAAGTGAACTCTTTTCCA+AGG - chr3_4:82063337-82063356 Msa0527610:intron 30.0%
! CTTTTACACATTAACAATGG+TGG + chr3_4:82063407-82063426 None:intergenic 30.0%
TCATGACTAAAAAGTGATAG+TGG - chr3_4:82063465-82063484 Msa0527610:CDS 30.0%
AAAAATCAATAGATCAAGGG+AGG - chr3_4:82063548-82063567 Msa0527610:CDS 30.0%
!! GTTTTAATCTGTTGCAGAAA+AGG - chr3_4:82063678-82063697 Msa0527610:CDS 30.0%
AACTGAAGCTAAGAAAGATA+AGG - chr3_4:82063747-82063766 Msa0527610:CDS 30.0%
GAGAAATGAAGTAAGTAAGA+TGG - chr3_4:82063933-82063952 Msa0527610:intron 30.0%
AGAGGATCATCTTAAAAACA+AGG - chr3_4:82063975-82063994 Msa0527610:intron 30.0%
AAGATTACACACAGATCAAA+AGG - chr3_4:82064141-82064160 Msa0527610:CDS 30.0%
GATTAAGATGTATAGAACTG+AGG - chr3_4:82064213-82064232 Msa0527610:intron 30.0%
AACGCATCATTAATGGAAAT+TGG + chr3_4:82064249-82064268 None:intergenic 30.0%
CATTGTAAACGCATCATTAA+TGG + chr3_4:82064256-82064275 None:intergenic 30.0%
!! AAGATAAGAAAGCTTTGGAA+CGG - chr3_4:82064359-82064378 Msa0527610:CDS 30.0%
ATAATCACGAATGAGATTAG+CGG + chr3_4:82064719-82064738 None:intergenic 30.0%
! TTTTGGACTAACTTTTGCAT+AGG - chr3_4:82064798-82064817 Msa0527610:intron 30.0%
! CATAGGAATTTTGTATCTAC+TGG - chr3_4:82064815-82064834 Msa0527610:intron 30.0%
GGTTTATCTATACAGTAACA+TGG - chr3_4:82064836-82064855 Msa0527610:intron 30.0%
ATGGAAAGATGAAAGTGATA+AGG - chr3_4:82064958-82064977 Msa0527610:CDS 30.0%
AGAAGAAAGAAAGATTATGC+AGG - chr3_4:82065003-82065022 Msa0527610:intron 30.0%
AAAAGCAGAATCACAATTGA+AGG - chr3_4:82065075-82065094 Msa0527610:intron 30.0%
!! ATACGGTATTTATTTTTCGC+AGG - chr3_4:82065158-82065177 Msa0527610:intron 30.0%
TTAAGTTTCGTAACGAACAA+TGG - chr3_4:82065285-82065304 Msa0527610:intron 30.0%
TTCCAAAAGCCAAACATAAA+AGG - chr3_4:82065366-82065385 Msa0527610:CDS 30.0%
! TCTATGTTGCCTTTTATGTT+TGG + chr3_4:82065378-82065397 None:intergenic 30.0%
! GGTAGAACCATATTTCATTT+TGG + chr3_4:82065436-82065455 None:intergenic 30.0%
ACCGAAAATGTGTTGAAAAA+AGG - chr3_4:82065453-82065472 Msa0527610:intron 30.0%
! AGAAACAAATTTTCTGATGG+TGG - chr3_4:82065489-82065508 Msa0527610:intron 30.0%
CACCAAAGATGAAGAAATTA+AGG - chr3_4:82065698-82065717 Msa0527610:intron 30.0%
AGATGAAGAAATTAAGGTAC+TGG - chr3_4:82065704-82065723 Msa0527610:intron 30.0%
TTGTCAATCGTAGAAAATAG+TGG - chr3_4:82065749-82065768 Msa0527610:intron 30.0%
CATCAATAAAATCCGATGAT+AGG - chr3_4:82066041-82066060 Msa0527610:exon 30.0%
GAAGTTCAAACTTCTCTAAA+AGG - chr3_4:82066074-82066093 Msa0527610:five_prime_UTR 30.0%
CAATGCTATAAAATTACTGC+AGG - chr3_4:82066159-82066178 Msa0527610:five_prime_UTR 30.0%
CTTTATGAAGAGAAAATTGG+AGG - chr3_4:82066205-82066224 Msa0527610:five_prime_UTR 30.0%
ACACTTACCATCACCAAAAT+TGG - chr3_4:82062745-82062764 Msa0527610:three_prime_UTR 35.0%
!! TTGGTATCCAATTTTGGTGA+TGG + chr3_4:82062755-82062774 None:intergenic 35.0%
TCACCAAAATTGGATACCAA+AGG - chr3_4:82062755-82062774 Msa0527610:three_prime_UTR 35.0%
!! TAGCATACTCCATTTGTTGT+TGG - chr3_4:82062802-82062821 Msa0527610:three_prime_UTR 35.0%
TTATGGTAAGTGTACTGTTG+AGG + chr3_4:82062843-82062862 None:intergenic 35.0%
!! TAGGTGTTCTACTTTTGTGA+TGG + chr3_4:82062948-82062967 None:intergenic 35.0%
TCACAAAAGTAGAACACCTA+TGG - chr3_4:82062948-82062967 Msa0527610:intron 35.0%
GAAAATGGTTGTCAATGAAG+AGG - chr3_4:82063035-82063054 Msa0527610:CDS 35.0%
TCATGCATGTAAAACACCAA+TGG - chr3_4:82063176-82063195 Msa0527610:intron 35.0%
! GAGTCCATCTAATTTTCCAT+TGG + chr3_4:82063195-82063214 None:intergenic 35.0%
GACACACAAGACCAAAAATA+AGG + chr3_4:82063257-82063276 None:intergenic 35.0%
! CTCTTTTCCAAGGTAACAAA+AGG - chr3_4:82063347-82063366 Msa0527610:intron 35.0%
ATCTTAATCTCGTCTTCAAG+AGG + chr3_4:82064202-82064221 None:intergenic 35.0%
TCAGGAAGATAAGAAAGCTT+TGG - chr3_4:82064354-82064373 Msa0527610:CDS 35.0%
AAAACTTTGACCTGAAGAGA+CGG - chr3_4:82064476-82064495 Msa0527610:intron 35.0%
! TACAACTTTTCATGAACAGG+AGG - chr3_4:82064588-82064607 Msa0527610:CDS 35.0%
CCTCAAGTTCATGAATTGTT+TGG + chr3_4:82064672-82064691 None:intergenic 35.0%
CCAAACAATTCATGAACTTG+AGG - chr3_4:82064669-82064688 Msa0527610:CDS 35.0%
! TGATATGACGACTTGCATTT+TGG - chr3_4:82064781-82064800 Msa0527610:intron 35.0%
TAAAATTTCAGGAGGAGAAG+AGG - chr3_4:82064867-82064886 Msa0527610:CDS 35.0%
!!! TTTTGCTGTTCTCTCTGATA+TGG + chr3_4:82065059-82065078 None:intergenic 35.0%
AGAAGGCTTAAAGCAATTCT+CGG - chr3_4:82065212-82065231 Msa0527610:intron 35.0%
TGGAGATACTGAAAATGCAT+TGG + chr3_4:82065244-82065263 None:intergenic 35.0%
! TTGGAACAAAGTGTTTCCAA+CGG + chr3_4:82065352-82065371 None:intergenic 35.0%
!!! TGCCTTTTATGTTTGGCTTT+TGG + chr3_4:82065371-82065390 None:intergenic 35.0%
AAAAGGCAACATAGACAGTA+TGG - chr3_4:82065383-82065402 Msa0527610:intron 35.0%
!!! TTCATTTTGGTTATGCTACC+CGG + chr3_4:82065423-82065442 None:intergenic 35.0%
! TTTAGAGTCTTCATCAGCAT+TGG + chr3_4:82065559-82065578 None:intergenic 35.0%
!! TGATTTAGAAAGCACTGATG+TGG - chr3_4:82065593-82065612 Msa0527610:intron 35.0%
CAATAAAATCCGATGATAGG+AGG - chr3_4:82066044-82066063 Msa0527610:exon 35.0%
TGATGGTAAGTGTACTGTTG+AGG + chr3_4:82062738-82062757 None:intergenic 40.0%
TAAGTGTACTGTTGAGGCTA+AGG + chr3_4:82062732-82062751 None:intergenic 40.0%
! ACAACATCTGGTTTGACAAG+AGG + chr3_4:82063063-82063082 None:intergenic 40.0%
CAAACCAGATGTTGTTGTGT+TGG - chr3_4:82063068-82063087 Msa0527610:CDS 40.0%
ATCTCCAACACAACAACATC+TGG + chr3_4:82063075-82063094 None:intergenic 40.0%
! TAGATGGACTCATTGTGTCA+AGG - chr3_4:82063204-82063223 Msa0527610:intron 40.0%
!!! TTTTTGGTCTTGTGTGTCAG+TGG - chr3_4:82063259-82063278 Msa0527610:intron 40.0%
AATGAACTTGCAACATGCCA+TGG - chr3_4:82063703-82063722 Msa0527610:CDS 40.0%
AACATGCCATGGTGAAATCA+AGG - chr3_4:82063714-82063733 Msa0527610:CDS 40.0%
! TTATGGCCTTGATTTCACCA+TGG + chr3_4:82063723-82063742 None:intergenic 40.0%
ATGGTGAAATCAAGGCCATA+AGG - chr3_4:82063722-82063741 Msa0527610:CDS 40.0%
TGGTGAAATCAAGGCCATAA+GGG - chr3_4:82063723-82063742 Msa0527610:CDS 40.0%
GAAAGATAAGGCCATAGAAG+AGG - chr3_4:82063759-82063778 Msa0527610:CDS 40.0%
TGCGAGACTAAGACTTAAAG+AGG - chr3_4:82063957-82063976 Msa0527610:intron 40.0%
CTGTCAGTTTCTTGACTTCT+AGG + chr3_4:82064069-82064088 None:intergenic 40.0%
AGACGAAAAGAAAGATGCGT+TGG - chr3_4:82064087-82064106 Msa0527610:CDS 40.0%
TGATTCTGCAGCATATTGTG+CGG + chr3_4:82064113-82064132 None:intergenic 40.0%
!! GAAGTGCTGTAATCTGTAGA+TGG + chr3_4:82064336-82064355 None:intergenic 40.0%
TCTACAGATTACAGCACTTC+AGG - chr3_4:82064336-82064355 Msa0527610:CDS 40.0%
ACAGGAGGAGAACAAAATCT+TGG - chr3_4:82064603-82064622 Msa0527610:CDS 40.0%
AAATCTTGGAGAAAAGCCAC+CGG - chr3_4:82064617-82064636 Msa0527610:CDS 40.0%
! CAACTTCCACAATCTTTTGC+CGG + chr3_4:82064639-82064658 None:intergenic 40.0%
GAGGAGCTCATCTTATCAAA+TGG - chr3_4:82064688-82064707 Msa0527610:CDS 40.0%
CAGATTTCTGAGTTGCAAGT+AGG - chr3_4:82064745-82064764 Msa0527610:intron 40.0%
ACTAGAGAGGGAATTAGCAA+GGG - chr3_4:82064892-82064911 Msa0527610:CDS 40.0%
CAACAGAATTGCAACTGTTG+CGG - chr3_4:82064928-82064947 Msa0527610:CDS 40.0%
TCTTCTAACCATTGCCTAAC+AGG + chr3_4:82064989-82065008 None:intergenic 40.0%
AGGCTAAAAACGCTTGAAGA+AGG - chr3_4:82065195-82065214 Msa0527610:intron 40.0%
AGTTTCGTAACGAACAATGG+TGG - chr3_4:82065288-82065307 Msa0527610:intron 40.0%
!! ACAATGGTGGATTGAGAAAC+AGG - chr3_4:82065301-82065320 Msa0527610:intron 40.0%
AATGAGATACAGGTGAACAC+AGG - chr3_4:82065522-82065541 Msa0527610:intron 40.0%
CGATTGACAACTCTGATATG+AGG + chr3_4:82065739-82065758 None:intergenic 40.0%
GATGCTCACAAAGAAAGTTG+AGG - chr3_4:82065946-82065965 Msa0527610:intron 40.0%
!! GAAAGTTGAGGCATTGACAA+AGG - chr3_4:82065958-82065977 Msa0527610:intron 40.0%
CAAAGGCTATGGAAGTAGAA+TGG - chr3_4:82065975-82065994 Msa0527610:CDS 40.0%
!! TCTGCTTTTCCTCCTATCAT+CGG + chr3_4:82066056-82066075 None:intergenic 40.0%
TCTCAGACTCTGTAAGTTAG+TGG + chr3_4:82066311-82066330 None:intergenic 40.0%
CTTCTCTGTATGTACAGAGT+TGG + chr3_4:82066335-82066354 None:intergenic 40.0%
!! TGATGGAAAGTGCCCTATTG+AGG + chr3_4:82062931-82062950 None:intergenic 45.0%
CTTAGCTTCAGTTGCCCTTA+TGG + chr3_4:82063740-82063759 None:intergenic 45.0%
GGCGTGATGACACTTTCAAA+TGG + chr3_4:82064181-82064200 None:intergenic 45.0%
GCTCACAAAGTCGAAAGAGT+TGG - chr3_4:82064381-82064400 Msa0527610:CDS 45.0%
ATCACGAATGAGATTAGCGG+TGG + chr3_4:82064716-82064735 None:intergenic 45.0%
CACTAGAGAGGGAATTAGCA+AGG - chr3_4:82064891-82064910 Msa0527610:CDS 45.0%
CGCAACAGTTGCAATTCTGT+TGG + chr3_4:82064930-82064949 None:intergenic 45.0%
CAACTGTTGCGGCTAATGAA+TGG - chr3_4:82064939-82064958 Msa0527610:CDS 45.0%
GTGATAAGGTCATGCCTGTT+AGG - chr3_4:82064972-82064991 Msa0527610:CDS 45.0%
TTATGCAGGCAGAGATGCAA+AGG - chr3_4:82065017-82065036 Msa0527610:intron 45.0%
AGGTCTACATCACAACCAAG+AGG - chr3_4:82065321-82065340 Msa0527610:CDS 45.0%
TTTCCAACGGTAGATCCTCT+TGG + chr3_4:82065339-82065358 None:intergenic 45.0%
GCAACATAGACAGTATGGCT+GGG - chr3_4:82065388-82065407 Msa0527610:intron 45.0%
! TGGTTATGCTACCCGGTTTT+CGG + chr3_4:82065416-82065435 None:intergenic 45.0%
!! TGAGGCATTGACAAAGGCTA+TGG - chr3_4:82065964-82065983 Msa0527610:CDS 45.0%
!!! TAGTAATAAATAATTTTATA+CGG - chr3_4:82065141-82065160 Msa0527610:intron 5.0%
! GGTCTTGTGTGTCAGTGGTA+AGG - chr3_4:82063264-82063283 Msa0527610:intron 50.0%
TGGCATTGCTTGAAGCAGAG+AGG - chr3_4:82064401-82064420 Msa0527610:CDS 50.0%
AGATCTCGATCCGTCTCTTC+AGG + chr3_4:82064489-82064508 None:intergenic 50.0%
AAGCCACCGGCAAAAGATTG+TGG - chr3_4:82064630-82064649 Msa0527610:CDS 50.0%
! CTTCCACAATCTTTTGCCGG+TGG + chr3_4:82064636-82064655 None:intergenic 50.0%
AGGAGAAGAGGACACTAGAG+AGG - chr3_4:82064879-82064898 Msa0527610:CDS 50.0%
GGAGAAGAGGACACTAGAGA+GGG - chr3_4:82064880-82064899 Msa0527610:CDS 50.0%
AGGTCATGCCTGTTAGGCAA+TGG - chr3_4:82064978-82064997 Msa0527610:CDS 50.0%
CGCAGGATAAACTGAAGCTG+AGG - chr3_4:82065175-82065194 Msa0527610:intron 50.0%
CAACCAAGAGGATCTACCGT+TGG - chr3_4:82065333-82065352 Msa0527610:CDS 50.0%
GGCAACATAGACAGTATGGC+TGG - chr3_4:82065387-82065406 Msa0527610:intron 50.0%
TATGGCTGGGAACCGAAAAC+CGG - chr3_4:82065401-82065420 Msa0527610:intron 50.0%
!! GAAAGCACTGATGTGGTCTC+TGG - chr3_4:82065600-82065619 Msa0527610:intron 50.0%
ATGGCTGGGAACCGAAAACC+GGG - chr3_4:82065402-82065421 Msa0527610:intron 55.0%
GAGACGGATCGAGATCTGCC+AGG - chr3_4:82064492-82064511 Msa0527610:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 82062680 82066404 82062680 ID=Msa0527610;Name=Msa0527610
chr3_4 mRNA 82062680 82066404 82062680 ID=Msa0527610-mRNA-1;Parent=Msa0527610;Name=Msa0527610-mRNA-1;_AED=0.08;_eAED=0.08;_QI=359|1|1|1|1|1|10|205|552
chr3_4 exon 82062680 82062903 82062680 ID=Msa0527610-mRNA-1:exon:24826;Parent=Msa0527610-mRNA-1
chr3_4 exon 82062989 82063137 82062989 ID=Msa0527610-mRNA-1:exon:24825;Parent=Msa0527610-mRNA-1
chr3_4 exon 82063365 82063904 82063365 ID=Msa0527610-mRNA-1:exon:24824;Parent=Msa0527610-mRNA-1
chr3_4 exon 82063988 82064206 82063988 ID=Msa0527610-mRNA-1:exon:24823;Parent=Msa0527610-mRNA-1
chr3_4 exon 82064322 82064477 82064322 ID=Msa0527610-mRNA-1:exon:24822;Parent=Msa0527610-mRNA-1
chr3_4 exon 82064571 82064741 82064571 ID=Msa0527610-mRNA-1:exon:24821;Parent=Msa0527610-mRNA-1
chr3_4 exon 82064850 82065020 82064850 ID=Msa0527610-mRNA-1:exon:24820;Parent=Msa0527610-mRNA-1
chr3_4 exon 82065088 82065153 82065088 ID=Msa0527610-mRNA-1:exon:24819;Parent=Msa0527610-mRNA-1
chr3_4 exon 82065304 82065389 82065304 ID=Msa0527610-mRNA-1:exon:24818;Parent=Msa0527610-mRNA-1
chr3_4 exon 82065964 82066404 82065964 ID=Msa0527610-mRNA-1:exon:24817;Parent=Msa0527610-mRNA-1
chr3_4 five_prime_UTR 82066046 82066404 82066046 ID=Msa0527610-mRNA-1:five_prime_utr;Parent=Msa0527610-mRNA-1
chr3_4 CDS 82065964 82066045 82065964 ID=Msa0527610-mRNA-1:cds;Parent=Msa0527610-mRNA-1
chr3_4 CDS 82065304 82065389 82065304 ID=Msa0527610-mRNA-1:cds;Parent=Msa0527610-mRNA-1
chr3_4 CDS 82065088 82065153 82065088 ID=Msa0527610-mRNA-1:cds;Parent=Msa0527610-mRNA-1
chr3_4 CDS 82064850 82065020 82064850 ID=Msa0527610-mRNA-1:cds;Parent=Msa0527610-mRNA-1
chr3_4 CDS 82064571 82064741 82064571 ID=Msa0527610-mRNA-1:cds;Parent=Msa0527610-mRNA-1
chr3_4 CDS 82064322 82064477 82064322 ID=Msa0527610-mRNA-1:cds;Parent=Msa0527610-mRNA-1
chr3_4 CDS 82063988 82064206 82063988 ID=Msa0527610-mRNA-1:cds;Parent=Msa0527610-mRNA-1
chr3_4 CDS 82063365 82063904 82063365 ID=Msa0527610-mRNA-1:cds;Parent=Msa0527610-mRNA-1
chr3_4 CDS 82062989 82063137 82062989 ID=Msa0527610-mRNA-1:cds;Parent=Msa0527610-mRNA-1
chr3_4 CDS 82062885 82062903 82062885 ID=Msa0527610-mRNA-1:cds;Parent=Msa0527610-mRNA-1
chr3_4 three_prime_UTR 82062680 82062884 82062680 ID=Msa0527610-mRNA-1:three_prime_utr;Parent=Msa0527610-mRNA-1
Gene Sequence

>Msa0527610

ATGGTTGTCAATGAAGAGGTTCCTCTTGTCAAACCAGATGTTGTTGTGTTGGAGATTGATCATTTGCAAAACAAACTCATAGAAAAGGTTAATGAACTTGCAACATGCCATGGTGAAATCAAGGCCATAAGGGCAACTGAAGCTAAGAAAGATAAGGCCATAGAAGAGCTGAGAAATGAAGTAAGTAAGATGGATGCGAGACTAAGACTTAAAGAGGATCATCTTAAAAACAAGAACCTAGAAGTCAAGAAACTGACAGACGAAAAGAAAGATGCGTTGGCCGCACAATATGCTGCAGAATCAGCACTTAGAAGATTACACACAGATCAAAAGGAAGAAGATTTTTATCCATTTGAAAGTGTCATCACGCCTCTTGAAGACGAGATTAAGATGTATAGAACTGAGATTACAGCACTTCAGGAAGATAAGAAAGCTTTGGAACGGCTCACAAAGTCGAAAGAGTTGGCATTGCTTGAAGCAGAGAGGATTTTACGAAGTGCACTAGAGAGAGCTTTGATAGTCGAAGAAGTTCAGAATGAAAACTTTGACCTGAAGAGACGGATCGAGATCTGCCAGGAGGAGAACAAAATCTTGGAGAAAAGCCACCGGCAAAAGATTGTGGAAGTTGAGAAACTTAGCCAAACAATTCATGAACTTGAGGAGCTCATCTTATCAAATGGAGCCACCGCTAATCTCATTCGTGATTATAAGCGACAGATTTCTGAGTTGCAAGAGGAGAAGAGGACACTAGAGAGGGAATTAGCAAGGGTAAAAGTTTCTGCCAACAGAATTGCAACTGTTGCGGCTAATGAATGGAAAGATGAAAGTGATAAGGTCATGCCTGTTAGGCAATGGTTAGAAGAAAGAAAGATTATGCAGGCAGAGATGCAAAGGTTGAAAGAAAAGCTTGCCATATCAGAGAGAACAGCAAAAGCAGAATCACAATTGAAGGATAAACTGAAGCTGAGGCTAAAAACGCTTGAAGAAGGCTTAAAGCAATTCTCGGTCAATTCCAATGCATTTTCAGTATCTCCAAAAGCTGATAAATCGAATATCTTAAGTTTCGTAACGAACAATGGTGGATTGAGAAACAGGTCTACATCACAACCAAGAGGATCTACCGTTGGAAACACTTTGTTCCAAAAGCCAAACATAAAAGGCAACATAGACAGTATGGCTGGGAACCGAAAACCGGGTAGCATAACCAAAATGAAATATGGTTCTACCGAAAATGTGTTGAAAAAAGGTATATGGGCGTCAAGAAACAAATTTTCTGATGGTGGTGAAAAAGAAAATGAGATACAGGTGAACACAGGCAGTGTTAAAACCAATGCTGATGAAGACTCTAAAAGTAATAGCAGCAATGATTTAGAAAGCACTGATGTGGTCTCTGGATTTTTATATGATAAGCTTCAAAAAGAAGTCATCAATTTGAGGAAGACTTGTGAAACAAAAGACAATACTCTGCACACCAAAGATGAAGAAATTAAGATGCTCACAAAGAAAGTTGAGGCATTGACAAAGGCTATGGAAGTAGAATGGAAAAAAATGAAAAGAGAAATAGCTGCAAGAGAGAAAGAAGTTGCATCAATAAAATCCGATGATAGGAGGAAAAGCAGAAGTTCAAACTTCTCTAAAAGGGTGATGAAAAAACATTGA

Protein sequence

>Msa0527610

MVVNEEVPLVKPDVVVLEIDHLQNKLIEKVNELATCHGEIKAIRATEAKKDKAIEELRNEVSKMDARLRLKEDHLKNKNLEVKKLTDEKKDALAAQYAAESALRRLHTDQKEEDFYPFESVITPLEDEIKMYRTEITALQEDKKALERLTKSKELALLEAERILRSALERALIVEEVQNENFDLKRRIEICQEENKILEKSHRQKIVEVEKLSQTIHELEELILSNGATANLIRDYKRQISELQEEKRTLERELARVKVSANRIATVAANEWKDESDKVMPVRQWLEERKIMQAEMQRLKEKLAISERTAKAESQLKDKLKLRLKTLEEGLKQFSVNSNAFSVSPKADKSNILSFVTNNGGLRNRSTSQPRGSTVGNTLFQKPNIKGNIDSMAGNRKPGSITKMKYGSTENVLKKGIWASRNKFSDGGEKENEIQVNTGSVKTNADEDSKSNSSNDLESTDVVSGFLYDKLQKEVINLRKTCETKDNTLHTKDEEIKMLTKKVEALTKAMEVEWKKMKREIAAREKEVASIKSDDRRKSRSSNFSKRVMKKH*