AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0277650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0277650 MtrunA17_Chr2g0290411 96.920 552 17 0 1 552 1 552 0.0 1077
Msa0277650 MtrunA17_Chr4g0076251 67.140 563 161 4 6 552 19 573 0.0 695
Msa0277650 MtrunA17_Chr8g0391771 47.263 548 257 9 13 545 57 587 1.52e-151 448
Msa0277650 MtrunA17_Chr1g0161371 47.005 551 254 9 13 545 52 582 2.82e-150 444
Msa0277650 MtrunA17_Chr8g0344311 47.928 555 241 9 13 545 53 581 8.39e-149 441
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0277650 AT4G17220.1 56.154 520 182 7 15 529 8 486 6.16e-173 499
Msa0277650 AT1G68060.1 49.180 549 243 11 13 543 66 596 1.52e-157 464
Msa0277650 AT1G24764.1 47.541 549 256 7 13 545 74 606 2.10e-157 464
Msa0277650 AT1G24764.3 47.227 559 262 8 4 545 123 665 1.27e-155 461
Msa0277650 AT2G01750.2 46.691 559 266 7 4 546 63 605 9.43e-153 452
Msa0277650 AT2G01750.1 46.691 559 266 7 4 546 63 605 1.39e-152 451
Msa0277650 AT1G14840.1 46.863 542 248 7 13 536 49 568 5.66e-151 446
Msa0277650 AT1G14840.2 44.649 542 245 8 13 536 49 553 1.72e-135 406
Msa0277650 AT1G24764.2 48.188 469 211 7 93 545 1 453 1.77e-135 402

Find 105 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTCAGTTTCTTGACTTCT+AGG 0.102098 2_3:+10362803 None:intergenic
TTTCCTTTGGTCTTCTATTT+TGG 0.106408 2_3:+10364008 None:intergenic
TTTCCTTTGGTATCCAATTT+TGG 0.142874 2_3:+10364113 None:intergenic
CTTAGCTTCAGTTGCCCTTA+TGG 0.199525 2_3:+10363132 None:intergenic
ATTCTTTATGAAGAGAAAAT+TGG 0.212662 2_3:-10360666 Msa0277650:three_prime_UTR
GGTAGAACCATATTTCATTT+TGG 0.221595 2_3:+10361436 None:intergenic
TACCTTAATTTCTTCATCTT+TGG 0.231823 2_3:+10361169 None:intergenic
TTCCAAAAGCCAAACATAAA+AGG 0.248082 2_3:-10361503 Msa0277650:CDS
ACACTTACCATCACCAAAAT+TGG 0.257334 2_3:-10364126 Msa0277650:five_prime_UTR
GAAGTTCAAACTTCTCTAAA+AGG 0.264788 2_3:-10360794 Msa0277650:intron
TCTTCTAACCATTGCCTAAC+AGG 0.277147 2_3:+10361883 None:intergenic
CACCAAAGATGAAGAAATTA+AGG 0.291999 2_3:-10361171 Msa0277650:intron
ATATTCGATTTATCAGCTTT+TGG 0.300457 2_3:+10361608 None:intergenic
AGCATAACCAAAATGAAATA+TGG 0.322617 2_3:-10361443 Msa0277650:CDS
TTTACCAAGAAAGAAGAAAA+TGG 0.324121 2_3:-10363851 Msa0277650:exon
CCTCAAGTTCATGAATTGTT+TGG 0.350831 2_3:+10362200 None:intergenic
TCTACAGATTACAGCACTTC+AGG 0.391041 2_3:-10362533 Msa0277650:intron
GAAAGCACTGATGTGGTCTC+TGG 0.402489 2_3:-10361269 Msa0277650:CDS
GTGATAAGGTCATGCCTGTT+AGG 0.415652 2_3:-10361897 Msa0277650:CDS
TCAGGAAGATAAGAAAGCTT+TGG 0.418519 2_3:-10362515 Msa0277650:CDS
ACAATGGTGGATTGAGAAAC+AGG 0.418721 2_3:-10361568 Msa0277650:CDS
AAAAGGCAACATAGACAGTA+TGG 0.427289 2_3:-10361486 Msa0277650:CDS
TAGCATACTCCATTTGTTGT+TGG 0.431105 2_3:-10364069 Msa0277650:five_prime_UTR
AGATCTCGATCCGTCTCTTC+AGG 0.431500 2_3:+10362383 None:intergenic
ATCTCCAACACAACAACATC+TGG 0.433211 2_3:+10363799 None:intergenic
AAAAGCAGAATCACAATTGA+AGG 0.437230 2_3:-10361794 Msa0277650:intron
TATGGCTGGGAACCGAAAAC+CGG 0.449172 2_3:-10361468 Msa0277650:CDS
AAGATTACACACAGATCAAA+AGG 0.452964 2_3:-10362728 Msa0277650:CDS
GAGAAATGAAGTAAGTAAGA+TGG 0.460243 2_3:-10362936 Msa0277650:CDS
ATGGTGAAATCAAGGCCATA+AGG 0.461955 2_3:-10363147 Msa0277650:CDS
ACAGGAGGAGAACAAAATCT+TGG 0.462576 2_3:-10362266 Msa0277650:intron
AGAAGGCTTAAAGCAATTCT+CGG 0.473398 2_3:-10361657 Msa0277650:CDS
GAGGAGCTCATCTTATCAAA+TGG 0.475247 2_3:-10362181 Msa0277650:CDS
CGCAACAGTTGCAATTCTGT+TGG 0.479391 2_3:+10361942 None:intergenic
CATCAATAAAATCCGATGAT+AGG 0.480394 2_3:-10360827 Msa0277650:CDS
TTTAGAGTCTTCATCAGCAT+TGG 0.483845 2_3:+10361313 None:intergenic
TGGAGATACTGAAAATGCAT+TGG 0.489587 2_3:+10361628 None:intergenic
AAAACACCAACAACAAATGA+TGG 0.495818 2_3:+10364168 None:intergenic
TCTCAGACTCTGTAAGTTAG+TGG 0.498944 2_3:+10360560 None:intergenic
TCACAAAAGTAGAACACCTA+TGG 0.501557 2_3:-10363923 Msa0277650:five_prime_UTR
TAAAAGCCATCATTTGTTGT+TGG 0.502135 2_3:-10364174 Msa0277650:five_prime_UTR
GGCAACATAGACAGTATGGC+TGG 0.502574 2_3:-10361482 Msa0277650:CDS
TTTCCAACGGTAGATCCTCT+TGG 0.502837 2_3:+10361533 None:intergenic
CATTTGCAAAACAAACTCAT+AGG 0.508565 2_3:-10363772 Msa0277650:intron
CAAACCAGATGTTGTTGTGT+TGG 0.510088 2_3:-10363803 Msa0277650:CDS
ATGGAAAGATGAAAGTGATA+AGG 0.511209 2_3:-10361911 Msa0277650:CDS
CAAAGGCTATGGAAGTAGAA+TGG 0.511214 2_3:-10360893 Msa0277650:CDS
CTTTATGAAGAGAAAATTGG+AGG 0.512076 2_3:-10360663 Msa0277650:three_prime_UTR
CAACTGTTGCGGCTAATGAA+TGG 0.512914 2_3:-10361930 Msa0277650:CDS
CTTCTCTGTATGTACAGAGT+TGG 0.523530 2_3:+10360536 None:intergenic
TAAGTGTACTGTTGAGGCTA+AGG 0.523957 2_3:+10364037 None:intergenic
TACATGCCATGGTGAAATCA+AGG 0.527571 2_3:-10363155 Msa0277650:CDS
TGAGGCATTGACAAAGGCTA+TGG 0.528361 2_3:-10360904 Msa0277650:CDS
TGCGAGACTAAGACTTAAAG+AGG 0.531452 2_3:-10362912 Msa0277650:CDS
GGCGTGATGACACTTTCAAA+TGG 0.532270 2_3:+10362691 None:intergenic
TAAAATTTCAGGAGGAGAAG+AGG 0.539106 2_3:-10362002 Msa0277650:intron
CCAAACAATTCATGAACTTG+AGG 0.539948 2_3:-10362200 Msa0277650:CDS
AACAAATGAAGTATGATCAC+TGG 0.540299 2_3:+10363884 None:intergenic
AAGCCACCGGCAAAAGATTG+TGG 0.540851 2_3:-10362239 Msa0277650:CDS
TATATATAGTATTATTCCAT+AGG 0.547203 2_3:+10363907 None:intergenic
AGAAGAAAGAAAGATTATGC+AGG 0.548152 2_3:-10361866 Msa0277650:CDS
CACTAGAGAGGGAATTAGCA+AGG 0.557388 2_3:-10361978 Msa0277650:CDS
CAACAGAATTGCAACTGTTG+CGG 0.557551 2_3:-10361941 Msa0277650:CDS
TTAAGTTTCGTAACGAACAA+TGG 0.569896 2_3:-10361584 Msa0277650:CDS
CAATAAAATCCGATGATAGG+AGG 0.573485 2_3:-10360824 Msa0277650:CDS
GAGACGGATCGAGATCTGCC+AGG 0.577223 2_3:-10362377 Msa0277650:intron
TGGTGAAATCAAGGCCATAA+GGG 0.577785 2_3:-10363146 Msa0277650:CDS
ATCTTAATCTCGTCTTCAAG+AGG 0.579230 2_3:+10362670 None:intergenic
TGATGGAAAGTGCCCTATTG+AGG 0.579242 2_3:+10363943 None:intergenic
GAAAATGGTTGTCAATGAAG+AGG 0.581609 2_3:-10363836 Msa0277650:exon
AGACGAAAAGAAAGATGCGT+TGG 0.582689 2_3:-10362782 Msa0277650:CDS
AACTGAAGCTAAGAAAGATA+AGG 0.586496 2_3:-10363122 Msa0277650:CDS
GCTCACAAAGTCGAAAGAGT+TGG 0.587191 2_3:-10362488 Msa0277650:CDS
GAAAGATAAGGCCATAGAAG+AGG 0.588351 2_3:-10363110 Msa0277650:intron
ACAACATCTGGTTTGACAAG+AGG 0.589315 2_3:+10363811 None:intergenic
TTATGCAGGCAGAGATGCAA+AGG 0.590511 2_3:-10361852 Msa0277650:CDS
AGGAGAAGAGGACACTAGAG+AGG 0.591941 2_3:-10361990 Msa0277650:CDS
CGCAGGATAAACTGAAGCTG+AGG 0.593606 2_3:-10361694 Msa0277650:intron
AAAACTTTGACCTGAAGAGA+CGG 0.598972 2_3:-10362393 Msa0277650:CDS
ATGGCTGGGAACCGAAAACC+GGG 0.599697 2_3:-10361467 Msa0277650:CDS
AGGTCATGCCTGTTAGGCAA+TGG 0.612732 2_3:-10361891 Msa0277650:CDS
GAAAGTTGAGGCATTGACAA+AGG 0.615355 2_3:-10360910 Msa0277650:CDS
TTATGGCCTTGATTTCACCA+TGG 0.621711 2_3:+10363149 None:intergenic
TCACCAAAATTGGATACCAA+AGG 0.622755 2_3:-10364116 Msa0277650:five_prime_UTR
TAACCAAAATAGAAGACCAA+AGG 0.624121 2_3:-10364011 Msa0277650:five_prime_UTR
AAGATAAGAAAGCTTTGGAA+CGG 0.627349 2_3:-10362510 Msa0277650:CDS
TGATTTAGAAAGCACTGATG+TGG 0.627887 2_3:-10361276 Msa0277650:CDS
AATGAACTTGCTACATGCCA+TGG 0.628116 2_3:-10363166 Msa0277650:CDS
AGTTTCGTAACGAACAATGG+TGG 0.630214 2_3:-10361581 Msa0277650:CDS
CAACCAAGAGGATCTACCGT+TGG 0.630663 2_3:-10361536 Msa0277650:CDS
ATAATCACGAATGAGATTAG+CGG 0.637427 2_3:+10362153 None:intergenic
AAATCTTGGAGAAAAGCCAC+CGG 0.637665 2_3:-10362252 Msa0277650:CDS
TTATGGTAAGTGTACTGTTG+AGG 0.644306 2_3:+10364031 None:intergenic
GCAACATAGACAGTATGGCT+GGG 0.648667 2_3:-10361481 Msa0277650:CDS
TGGCATTGCTTGAAGCAGAG+AGG 0.652208 2_3:-10362468 Msa0277650:CDS
TTGGAACAAAGTGTTTCCAA+CGG 0.656799 2_3:+10361520 None:intergenic
ATCACGAATGAGATTAGCGG+TGG 0.659965 2_3:+10362156 None:intergenic
GGAGAAGAGGACACTAGAGA+GGG 0.660251 2_3:-10361989 Msa0277650:CDS
AATGAGATACAGGTGAACAC+AGG 0.676366 2_3:-10361347 Msa0277650:CDS
TGATGGTAAGTGTACTGTTG+AGG 0.679865 2_3:+10364136 None:intergenic
GATGCTCACAAAGAAAGTTG+AGG 0.680066 2_3:-10360922 Msa0277650:CDS
ACTAGAGAGGGAATTAGCAA+GGG 0.681716 2_3:-10361977 Msa0277650:CDS
GATTAAGATGTATAGAACTG+AGG 0.694125 2_3:-10362656 Msa0277650:intron
AGGTCTACATCACAACCAAG+AGG 0.700161 2_3:-10361548 Msa0277650:CDS
TGATTCTGCAGCATATTGTG+CGG 0.724358 2_3:+10362759 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGGTATTTAAAAAAATAA+AGG - chr2_3:10361168-10361187 Msa0277650:intron 10.0%
!!! TAATTTATTTTTTTCTATGT+AGG - chr2_3:10362904-10362923 Msa0277650:CDS 10.0%
!!! TATATAAAGTATTTTTCCTT+TGG + chr2_3:10360683-10360702 None:intergenic 15.0%
!! TATATATAGTATTATTCCAT+AGG + chr2_3:10360771-10360790 None:intergenic 15.0%
!! TTAAAAAAATCAATAGATCA+AGG - chr2_3:10361350-10361369 Msa0277650:CDS 15.0%
!! TAAAAAAATCAATAGATCAA+GGG - chr2_3:10361351-10361370 Msa0277650:CDS 15.0%
!!! CTATTTTTACTCCTTATTTT+TGG - chr2_3:10361047-10361066 Msa0277650:intron 20.0%
!!! TTTCTTTTACACATTAACAA+TGG + chr2_3:10361213-10361232 None:intergenic 20.0%
!! AACAAATAATGTTCTAACTT+TGG + chr2_3:10361645-10361664 None:intergenic 20.0%
!!! CATAGAATTTATCATTGTTT+TGG + chr2_3:10361818-10361837 None:intergenic 20.0%
!! TAAAAAAAGAAGTCAGATAA+CGG + chr2_3:10363627-10363646 None:intergenic 20.0%
!!! TTTAGTTCTATGTAACAAAA+GGG + chr2_3:10363713-10363732 None:intergenic 20.0%
!! ATTCTTTATGAAGAGAAAAT+TGG - chr2_3:10364009-10364028 Msa0277650:five_prime_UTR 20.0%
!! ATACTATAGTGTTTTTCCTT+TGG + chr2_3:10360578-10360597 None:intergenic 25.0%
! ACAAAAATACCAACAACAAA+TGG + chr2_3:10360618-10360637 None:intergenic 25.0%
! TTTACCAAGAAAGAAGAAAA+TGG - chr2_3:10360824-10360843 Msa0277650:CDS 25.0%
! ATTTGCTTCATCATTTGATT+AGG - chr2_3:10360956-10360975 Msa0277650:intron 25.0%
!!! GCACTTTTTTTTTTATCGTA+AGG - chr2_3:10361107-10361126 Msa0277650:intron 25.0%
!! TTAAATACCTTTTGTTACCT+TGG + chr2_3:10361160-10361179 None:intergenic 25.0%
! AACTAGTGACAATTTATTCA+TGG - chr2_3:10361292-10361311 Msa0277650:CDS 25.0%
!! ATCACAGTTTTCTTTGAATA+TGG - chr2_3:10361410-10361429 Msa0277650:CDS 25.0%
! AAAAACAAATACCTCTTCTA+TGG + chr2_3:10361579-10361598 None:intergenic 25.0%
! GTTAGTGTTATCATCTTTAA+AGG + chr2_3:10362112-10362131 None:intergenic 25.0%
! ATAGAAACTATACACGAAAA+TGG + chr2_3:10362343-10362362 None:intergenic 25.0%
! TGTATAGTTTCTATATCGAA+CGG - chr2_3:10362349-10362368 Msa0277650:intron 25.0%
!! TTATACAACTTTTCATGAAC+AGG - chr2_3:10362391-10362410 Msa0277650:CDS 25.0%
!!! TGGTTTTAGCATAAAATTTC+AGG - chr2_3:10362662-10362681 Msa0277650:CDS 25.0%
!! TTTTAGCATAAAATTTCAGG+AGG - chr2_3:10362665-10362684 Msa0277650:CDS 25.0%
!! ATATTCGATTTATCAGCTTT+TGG + chr2_3:10363070-10363089 None:intergenic 25.0%
! AGCATAACCAAAATGAAATA+TGG - chr2_3:10363232-10363251 Msa0277650:intron 25.0%
!!! ACCTTTTTTCAACACATTTT+CGG + chr2_3:10363263-10363282 None:intergenic 25.0%
!! ATGTGTTGAAAAAAGGTATA+TGG - chr2_3:10363266-10363285 Msa0277650:intron 25.0%
!! TGTGTTGAAAAAAGGTATAT+GGG - chr2_3:10363267-10363286 Msa0277650:intron 25.0%
!! TCAAGAAACAAATTTTCTGA+TGG - chr2_3:10363292-10363311 Msa0277650:intron 25.0%
! TGAAAAAGAAAATGAGATAC+AGG - chr2_3:10363318-10363337 Msa0277650:intron 25.0%
! AAAAAGAAGTCATCAATTTG+AGG - chr2_3:10363449-10363468 Msa0277650:intron 25.0%
! TACCTTAATTTCTTCATCTT+TGG + chr2_3:10363509-10363528 None:intergenic 25.0%
!!! CTTTAGTTCTATGTAACAAA+AGG + chr2_3:10363714-10363733 None:intergenic 25.0%
! AGGTTAACTATAGAAGTAAA+AGG + chr2_3:10363943-10363962 None:intergenic 25.0%
!! GTAATTTTATAGCATTGTTC+AGG + chr2_3:10363963-10363982 None:intergenic 25.0%
! AATGCTATAAAATTACTGCA+GGG - chr2_3:10363967-10363986 Msa0277650:five_prime_UTR 25.0%
!! TAAAAGCCATCATTTGTTGT+TGG - chr2_3:10360501-10360520 Msa0277650:three_prime_UTR 30.0%
AAAACACCAACAACAAATGA+TGG + chr2_3:10360510-10360529 None:intergenic 30.0%
! TTTCCTTTGGTATCCAATTT+TGG + chr2_3:10360565-10360584 None:intergenic 30.0%
!!! TTGGTCTTCTATTTTGGTTA+TGG + chr2_3:10360664-10360683 None:intergenic 30.0%
TAACCAAAATAGAAGACCAA+AGG - chr2_3:10360664-10360683 Msa0277650:three_prime_UTR 30.0%
!! TTTCCTTTGGTCTTCTATTT+TGG + chr2_3:10360670-10360689 None:intergenic 30.0%
! TTTTTGTACTTAGCCTCAAT+AGG - chr2_3:10360719-10360738 Msa0277650:intron 30.0%
! TTTTGTACTTAGCCTCAATA+GGG - chr2_3:10360720-10360739 Msa0277650:intron 30.0%
AACAAATGAAGTATGATCAC+TGG + chr2_3:10360794-10360813 None:intergenic 30.0%
! ACAACCATTTTCTTCTTTCT+TGG + chr2_3:10360831-10360850 None:intergenic 30.0%
CATTTGCAAAACAAACTCAT+AGG - chr2_3:10360903-10360922 Msa0277650:CDS 30.0%
AACACCAATGGAAAATTAGA+TGG - chr2_3:10360992-10361011 Msa0277650:intron 30.0%
! TTTAAGTGAACTCTTTTCCA+AGG - chr2_3:10361140-10361159 Msa0277650:intron 30.0%
! CTTTTACACATTAACAATGG+TGG + chr2_3:10361210-10361229 None:intergenic 30.0%
TCATGACTAAAAAGTGATAG+TGG - chr2_3:10361268-10361287 Msa0277650:CDS 30.0%
AAAAATCAATAGATCAAGGG+AGG - chr2_3:10361354-10361373 Msa0277650:CDS 30.0%
!! GTTTTAATCTGTTGCAGAAA+AGG - chr2_3:10361484-10361503 Msa0277650:CDS 30.0%
AACTGAAGCTAAGAAAGATA+AGG - chr2_3:10361553-10361572 Msa0277650:CDS 30.0%
GAGAAATGAAGTAAGTAAGA+TGG - chr2_3:10361739-10361758 Msa0277650:intron 30.0%
AGAGGATCATCTTAAAAACA+AGG - chr2_3:10361781-10361800 Msa0277650:intron 30.0%
AAGATTACACACAGATCAAA+AGG - chr2_3:10361947-10361966 Msa0277650:CDS 30.0%
GATTAAGATGTATAGAACTG+AGG - chr2_3:10362019-10362038 Msa0277650:intron 30.0%
AACGCATCATTAATGGAAAT+TGG + chr2_3:10362055-10362074 None:intergenic 30.0%
CATTGTAAACGCATCATTAA+TGG + chr2_3:10362062-10362081 None:intergenic 30.0%
!! AAGATAAGAAAGCTTTGGAA+CGG - chr2_3:10362165-10362184 Msa0277650:CDS 30.0%
AACATAAGAAGATATATGCC+TGG + chr2_3:10362319-10362338 None:intergenic 30.0%
ATAATCACGAATGAGATTAG+CGG + chr2_3:10362525-10362544 None:intergenic 30.0%
! TTTTGGACTAACTTTTGCAT+AGG - chr2_3:10362604-10362623 Msa0277650:intron 30.0%
! CATAGGAATTTTGTATCTAC+TGG - chr2_3:10362621-10362640 Msa0277650:intron 30.0%
GGTTTATCTATACAGTAACA+TGG - chr2_3:10362642-10362661 Msa0277650:intron 30.0%
ATGGAAAGATGAAAGTGATA+AGG - chr2_3:10362764-10362783 Msa0277650:CDS 30.0%
AGAAGAAAGAAAGATTATGC+AGG - chr2_3:10362809-10362828 Msa0277650:intron 30.0%
AAAAGCAGAATCACAATTGA+AGG - chr2_3:10362881-10362900 Msa0277650:intron 30.0%
!! ATACGGTATTTATTTTTCGC+AGG - chr2_3:10362964-10362983 Msa0277650:intron 30.0%
TTAAGTTTCGTAACGAACAA+TGG - chr2_3:10363091-10363110 Msa0277650:intron 30.0%
TTCCAAAAGCCAAACATAAA+AGG - chr2_3:10363172-10363191 Msa0277650:CDS 30.0%
! TCTATGTTGCCTTTTATGTT+TGG + chr2_3:10363184-10363203 None:intergenic 30.0%
! GGTAGAACCATATTTCATTT+TGG + chr2_3:10363242-10363261 None:intergenic 30.0%
ACCGAAAATGTGTTGAAAAA+AGG - chr2_3:10363259-10363278 Msa0277650:intron 30.0%
! AGAAACAAATTTTCTGATGG+TGG - chr2_3:10363295-10363314 Msa0277650:intron 30.0%
CACCAAAGATGAAGAAATTA+AGG - chr2_3:10363504-10363523 Msa0277650:intron 30.0%
AGATGAAGAAATTAAGGTAC+TGG - chr2_3:10363510-10363529 Msa0277650:intron 30.0%
TTGTCAATCGTAGAAAATAG+TGG - chr2_3:10363556-10363575 Msa0277650:intron 30.0%
CATCAATAAAATCCGATGAT+AGG - chr2_3:10363848-10363867 Msa0277650:exon 30.0%
GAAGTTCAAACTTCTCTAAA+AGG - chr2_3:10363881-10363900 Msa0277650:five_prime_UTR 30.0%
CAATGCTATAAAATTACTGC+AGG - chr2_3:10363966-10363985 Msa0277650:five_prime_UTR 30.0%
CTTTATGAAGAGAAAATTGG+AGG - chr2_3:10364012-10364031 Msa0277650:five_prime_UTR 30.0%
ACACTTACCATCACCAAAAT+TGG - chr2_3:10360549-10360568 Msa0277650:three_prime_UTR 35.0%
!! TTGGTATCCAATTTTGGTGA+TGG + chr2_3:10360559-10360578 None:intergenic 35.0%
TCACCAAAATTGGATACCAA+AGG - chr2_3:10360559-10360578 Msa0277650:three_prime_UTR 35.0%
!! TAGCATACTCCATTTGTTGT+TGG - chr2_3:10360606-10360625 Msa0277650:three_prime_UTR 35.0%
TTATGGTAAGTGTACTGTTG+AGG + chr2_3:10360647-10360666 None:intergenic 35.0%
!! TAGGTGTTCTACTTTTGTGA+TGG + chr2_3:10360752-10360771 None:intergenic 35.0%
TCACAAAAGTAGAACACCTA+TGG - chr2_3:10360752-10360771 Msa0277650:intron 35.0%
GAAAATGGTTGTCAATGAAG+AGG - chr2_3:10360839-10360858 Msa0277650:CDS 35.0%
TCATGCATGTAAAACACCAA+TGG - chr2_3:10360980-10360999 Msa0277650:intron 35.0%
! GAGTCCATCTAATTTTCCAT+TGG + chr2_3:10360999-10361018 None:intergenic 35.0%
CTGACACAAGACCAAAAATA+AGG + chr2_3:10361061-10361080 None:intergenic 35.0%
!!! TATTTTTGGTCTTGTGTCAG+TGG - chr2_3:10361061-10361080 Msa0277650:intron 35.0%
! CTCTTTTCCAAGGTAACAAA+AGG - chr2_3:10361150-10361169 Msa0277650:intron 35.0%
ATCTTAATCTCGTCTTCAAG+AGG + chr2_3:10362008-10362027 None:intergenic 35.0%
TCAGGAAGATAAGAAAGCTT+TGG - chr2_3:10362160-10362179 Msa0277650:CDS 35.0%
AAAACTTTGACCTGAAGAGA+CGG - chr2_3:10362282-10362301 Msa0277650:intron 35.0%
! TACAACTTTTCATGAACAGG+AGG - chr2_3:10362394-10362413 Msa0277650:CDS 35.0%
CCTCAAGTTCATGAATTGTT+TGG + chr2_3:10362478-10362497 None:intergenic 35.0%
CCAAACAATTCATGAACTTG+AGG - chr2_3:10362475-10362494 Msa0277650:CDS 35.0%
! TGATATGACGACTTGCATTT+TGG - chr2_3:10362587-10362606 Msa0277650:intron 35.0%
TAAAATTTCAGGAGGAGAAG+AGG - chr2_3:10362673-10362692 Msa0277650:CDS 35.0%
!!! TTTTGCTGTTCTCTCTGATA+TGG + chr2_3:10362865-10362884 None:intergenic 35.0%
AGAAGGCTTAAAGCAATTCT+CGG - chr2_3:10363018-10363037 Msa0277650:intron 35.0%
TGGAGATACTGAAAATGCAT+TGG + chr2_3:10363050-10363069 None:intergenic 35.0%
! TTGGAACAAAGTGTTTCCAA+CGG + chr2_3:10363158-10363177 None:intergenic 35.0%
!!! TGCCTTTTATGTTTGGCTTT+TGG + chr2_3:10363177-10363196 None:intergenic 35.0%
AAAAGGCAACATAGACAGTA+TGG - chr2_3:10363189-10363208 Msa0277650:intron 35.0%
!!! TTCATTTTGGTTATGCTACC+CGG + chr2_3:10363229-10363248 None:intergenic 35.0%
! TTTAGAGTCTTCATCAGCAT+TGG + chr2_3:10363365-10363384 None:intergenic 35.0%
!! TGATTTAGAAAGCACTGATG+TGG - chr2_3:10363399-10363418 Msa0277650:intron 35.0%
CGATTGACAACTTTGATATG+AGG + chr2_3:10363546-10363565 None:intergenic 35.0%
CAATAAAATCCGATGATAGG+AGG - chr2_3:10363851-10363870 Msa0277650:exon 35.0%
TGATGGTAAGTGTACTGTTG+AGG + chr2_3:10360542-10360561 None:intergenic 40.0%
TAAGTGTACTGTTGAGGCTA+AGG + chr2_3:10360536-10360555 None:intergenic 40.0%
! ACAACATCTGGTTTGACAAG+AGG + chr2_3:10360867-10360886 None:intergenic 40.0%
CAAACCAGATGTTGTTGTGT+TGG - chr2_3:10360872-10360891 Msa0277650:CDS 40.0%
ATCTCCAACACAACAACATC+TGG + chr2_3:10360879-10360898 None:intergenic 40.0%
! TAGATGGACTCATTGTGTCA+AGG - chr2_3:10361008-10361027 Msa0277650:intron 40.0%
!! AATGAACTTGCTACATGCCA+TGG - chr2_3:10361509-10361528 Msa0277650:CDS 40.0%
TACATGCCATGGTGAAATCA+AGG - chr2_3:10361520-10361539 Msa0277650:CDS 40.0%
! TTATGGCCTTGATTTCACCA+TGG + chr2_3:10361529-10361548 None:intergenic 40.0%
ATGGTGAAATCAAGGCCATA+AGG - chr2_3:10361528-10361547 Msa0277650:CDS 40.0%
TGGTGAAATCAAGGCCATAA+GGG - chr2_3:10361529-10361548 Msa0277650:CDS 40.0%
GAAAGATAAGGCCATAGAAG+AGG - chr2_3:10361565-10361584 Msa0277650:CDS 40.0%
TGCGAGACTAAGACTTAAAG+AGG - chr2_3:10361763-10361782 Msa0277650:intron 40.0%
CTGTCAGTTTCTTGACTTCT+AGG + chr2_3:10361875-10361894 None:intergenic 40.0%
AGACGAAAAGAAAGATGCGT+TGG - chr2_3:10361893-10361912 Msa0277650:CDS 40.0%
TGATTCTGCAGCATATTGTG+CGG + chr2_3:10361919-10361938 None:intergenic 40.0%
!! GAAGTGCTGTAATCTGTAGA+TGG + chr2_3:10362142-10362161 None:intergenic 40.0%
TCTACAGATTACAGCACTTC+AGG - chr2_3:10362142-10362161 Msa0277650:CDS 40.0%
ACAGGAGGAGAACAAAATCT+TGG - chr2_3:10362409-10362428 Msa0277650:CDS 40.0%
AAATCTTGGAGAAAAGCCAC+CGG - chr2_3:10362423-10362442 Msa0277650:CDS 40.0%
! CAACTTCCACAATCTTTTGC+CGG + chr2_3:10362445-10362464 None:intergenic 40.0%
GAGGAGCTCATCTTATCAAA+TGG - chr2_3:10362494-10362513 Msa0277650:CDS 40.0%
CAGATTTCTGAGTTGCAAGT+AGG - chr2_3:10362551-10362570 Msa0277650:intron 40.0%
ACTAGAGAGGGAATTAGCAA+GGG - chr2_3:10362698-10362717 Msa0277650:CDS 40.0%
CAACAGAATTGCAACTGTTG+CGG - chr2_3:10362734-10362753 Msa0277650:CDS 40.0%
TCTTCTAACCATTGCCTAAC+AGG + chr2_3:10362795-10362814 None:intergenic 40.0%
AGGCTAAAAACGCTTGAAGA+AGG - chr2_3:10363001-10363020 Msa0277650:intron 40.0%
AGTTTCGTAACGAACAATGG+TGG - chr2_3:10363094-10363113 Msa0277650:intron 40.0%
!! ACAATGGTGGATTGAGAAAC+AGG - chr2_3:10363107-10363126 Msa0277650:intron 40.0%
AATGAGATACAGGTGAACAC+AGG - chr2_3:10363328-10363347 Msa0277650:intron 40.0%
GATGCTCACAAAGAAAGTTG+AGG - chr2_3:10363753-10363772 Msa0277650:intron 40.0%
!! GAAAGTTGAGGCATTGACAA+AGG - chr2_3:10363765-10363784 Msa0277650:intron 40.0%
CAAAGGCTATGGAAGTAGAA+TGG - chr2_3:10363782-10363801 Msa0277650:CDS 40.0%
!! TCTGCTTTTCCTCCTATCAT+CGG + chr2_3:10363863-10363882 None:intergenic 40.0%
TCTCAGACTCTGTAAGTTAG+TGG + chr2_3:10364118-10364137 None:intergenic 40.0%
CTTCTCTGTATGTACAGAGT+TGG + chr2_3:10364142-10364161 None:intergenic 40.0%
!! TGATGGAAAGTGCCCTATTG+AGG + chr2_3:10360735-10360754 None:intergenic 45.0%
!! TTGGTCTTGTGTCAGTGGTA+AGG - chr2_3:10361066-10361085 Msa0277650:intron 45.0%
CTTAGCTTCAGTTGCCCTTA+TGG + chr2_3:10361546-10361565 None:intergenic 45.0%
GGCGTGATGACACTTTCAAA+TGG + chr2_3:10361987-10362006 None:intergenic 45.0%
GCTCACAAAGTCGAAAGAGT+TGG - chr2_3:10362187-10362206 Msa0277650:CDS 45.0%
ATCACGAATGAGATTAGCGG+TGG + chr2_3:10362522-10362541 None:intergenic 45.0%
CACTAGAGAGGGAATTAGCA+AGG - chr2_3:10362697-10362716 Msa0277650:CDS 45.0%
CGCAACAGTTGCAATTCTGT+TGG + chr2_3:10362736-10362755 None:intergenic 45.0%
CAACTGTTGCGGCTAATGAA+TGG - chr2_3:10362745-10362764 Msa0277650:CDS 45.0%
GTGATAAGGTCATGCCTGTT+AGG - chr2_3:10362778-10362797 Msa0277650:CDS 45.0%
TTATGCAGGCAGAGATGCAA+AGG - chr2_3:10362823-10362842 Msa0277650:intron 45.0%
AGGTCTACATCACAACCAAG+AGG - chr2_3:10363127-10363146 Msa0277650:CDS 45.0%
TTTCCAACGGTAGATCCTCT+TGG + chr2_3:10363145-10363164 None:intergenic 45.0%
GCAACATAGACAGTATGGCT+GGG - chr2_3:10363194-10363213 Msa0277650:intron 45.0%
! TGGTTATGCTACCCGGTTTT+CGG + chr2_3:10363222-10363241 None:intergenic 45.0%
!! TGAGGCATTGACAAAGGCTA+TGG - chr2_3:10363771-10363790 Msa0277650:intron 45.0%
!!! TAGTAATAAATAATTTTATA+CGG - chr2_3:10362947-10362966 Msa0277650:intron 5.0%
TGGCATTGCTTGAAGCAGAG+AGG - chr2_3:10362207-10362226 Msa0277650:CDS 50.0%
AGATCTCGATCCGTCTCTTC+AGG + chr2_3:10362295-10362314 None:intergenic 50.0%
AAGCCACCGGCAAAAGATTG+TGG - chr2_3:10362436-10362455 Msa0277650:CDS 50.0%
! CTTCCACAATCTTTTGCCGG+TGG + chr2_3:10362442-10362461 None:intergenic 50.0%
AGGAGAAGAGGACACTAGAG+AGG - chr2_3:10362685-10362704 Msa0277650:CDS 50.0%
GGAGAAGAGGACACTAGAGA+GGG - chr2_3:10362686-10362705 Msa0277650:CDS 50.0%
AGGTCATGCCTGTTAGGCAA+TGG - chr2_3:10362784-10362803 Msa0277650:CDS 50.0%
CGCAGGATAAACTGAAGCTG+AGG - chr2_3:10362981-10363000 Msa0277650:intron 50.0%
CAACCAAGAGGATCTACCGT+TGG - chr2_3:10363139-10363158 Msa0277650:CDS 50.0%
GGCAACATAGACAGTATGGC+TGG - chr2_3:10363193-10363212 Msa0277650:intron 50.0%
TATGGCTGGGAACCGAAAAC+CGG - chr2_3:10363207-10363226 Msa0277650:intron 50.0%
!! GAAAGCACTGATGTGGTCTC+TGG - chr2_3:10363406-10363425 Msa0277650:intron 50.0%
ATGGCTGGGAACCGAAAACC+GGG - chr2_3:10363208-10363227 Msa0277650:intron 55.0%
GAGACGGATCGAGATCTGCC+AGG - chr2_3:10362298-10362317 Msa0277650:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 10360484 10364213 10360484 ID=Msa0277650;Name=Msa0277650
chr2_3 mRNA 10360484 10364213 10360484 ID=Msa0277650-mRNA-1;Parent=Msa0277650;Name=Msa0277650-mRNA-1;_AED=0.09;_eAED=0.09;_QI=359|1|1|1|1|1|10|207|552
chr2_3 exon 10360484 10360709 10360484 ID=Msa0277650-mRNA-1:exon:4585;Parent=Msa0277650-mRNA-1
chr2_3 exon 10360795 10360943 10360795 ID=Msa0277650-mRNA-1:exon:4584;Parent=Msa0277650-mRNA-1
chr2_3 exon 10361172 10361711 10361172 ID=Msa0277650-mRNA-1:exon:4583;Parent=Msa0277650-mRNA-1
chr2_3 exon 10361795 10362013 10361795 ID=Msa0277650-mRNA-1:exon:4582;Parent=Msa0277650-mRNA-1
chr2_3 exon 10362129 10362284 10362129 ID=Msa0277650-mRNA-1:exon:4581;Parent=Msa0277650-mRNA-1
chr2_3 exon 10362378 10362548 10362378 ID=Msa0277650-mRNA-1:exon:4580;Parent=Msa0277650-mRNA-1
chr2_3 exon 10362657 10362827 10362657 ID=Msa0277650-mRNA-1:exon:4579;Parent=Msa0277650-mRNA-1
chr2_3 exon 10362895 10362960 10362895 ID=Msa0277650-mRNA-1:exon:4578;Parent=Msa0277650-mRNA-1
chr2_3 exon 10363111 10363196 10363111 ID=Msa0277650-mRNA-1:exon:4577;Parent=Msa0277650-mRNA-1
chr2_3 exon 10363773 10364213 10363773 ID=Msa0277650-mRNA-1:exon:4576;Parent=Msa0277650-mRNA-1
chr2_3 five_prime_UTR 10363855 10364213 10363855 ID=Msa0277650-mRNA-1:five_prime_utr;Parent=Msa0277650-mRNA-1
chr2_3 CDS 10363773 10363854 10363773 ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1
chr2_3 CDS 10363111 10363196 10363111 ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1
chr2_3 CDS 10362895 10362960 10362895 ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1
chr2_3 CDS 10362657 10362827 10362657 ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1
chr2_3 CDS 10362378 10362548 10362378 ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1
chr2_3 CDS 10362129 10362284 10362129 ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1
chr2_3 CDS 10361795 10362013 10361795 ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1
chr2_3 CDS 10361172 10361711 10361172 ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1
chr2_3 CDS 10360795 10360943 10360795 ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1
chr2_3 CDS 10360691 10360709 10360691 ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1
chr2_3 three_prime_UTR 10360484 10360690 10360484 ID=Msa0277650-mRNA-1:three_prime_utr;Parent=Msa0277650-mRNA-1
Gene Sequence

>Msa0277650

ATGGTTGTCAATGAAGAGGTTCCTCTTGTCAAACCAGATGTTGTTGTGTTGGAGATTGATCATTTGCAAAACAAACTCATAGAAAAGGTTAATGAACTTGCTACATGCCATGGTGAAATCAAGGCCATAAGGGCAACTGAAGCTAAGAAAGATAAGGCCATAGAAGAGCTGAGAAATGAAGTAAGTAAGATGGATGCGAGACTAAGACTTAAAGAGGATCATCTTAAAAACAAGAACCTAGAAGTCAAGAAACTGACAGACGAAAAGAAAGATGCGTTGGCCGCACAATATGCTGCAGAATCAGCACTTAGAAGATTACACACAGATCAAAAGGAAGAAGATTTTTATCCATTTGAAAGTGTCATCACGCCTCTTGAAGACGAGATTAAGATGTATAGAACTGAGATTACAGCACTTCAGGAAGATAAGAAAGCTTTGGAACGGCTCACAAAGTCGAAAGAGTTGGCATTGCTTGAAGCAGAGAGGATTTTACGAAGTGCACTAGAGAGAGCTTTGATAGTCGAAGAAGTTCAGAATGAAAACTTTGACCTGAAGAGACGGATCGAGATCTGCCAGGAGGAGAACAAAATCTTGGAGAAAAGCCACCGGCAAAAGATTGTGGAAGTTGAGAAACTTAGCCAAACAATTCATGAACTTGAGGAGCTCATCTTATCAAATGGAGCCACCGCTAATCTCATTCGTGATTATAAGCGACAGATTTCTGAGTTGCAAGAGGAGAAGAGGACACTAGAGAGGGAATTAGCAAGGGTAAAAGTTTCTGCCAACAGAATTGCAACTGTTGCGGCTAATGAATGGAAAGATGAAAGTGATAAGGTCATGCCTGTTAGGCAATGGTTAGAAGAAAGAAAGATTATGCAGGCAGAGATGCAAAGGTTGAAAGAAAAGCTTGCCATATCAGAGAGAACAGCAAAAGCAGAATCACAATTGAAGGATAAACTGAAGCTGAGGCTAAAAACGCTTGAAGAAGGCTTAAAGCAATTCTCGGTCAATTCCAATGCATTTTCAGTATCTCCAAAAGCTGATAAATCGAATATCTTAAGTTTCGTAACGAACAATGGTGGATTGAGAAACAGGTCTACATCACAACCAAGAGGATCTACCGTTGGAAACACTTTGTTCCAAAAGCCAAACATAAAAGGCAACATAGACAGTATGGCTGGGAACCGAAAACCGGGTAGCATAACCAAAATGAAATATGGTTCTACCGAAAATGTGTTGAAAAAAGGTATATGGGCGTCAAGAAACAAATTTTCTGATGGTGGTGAAAAAGAAAATGAGATACAGGTGAACACAGGCAGTGTTAAAACCAATGCTGATGAAGACTCTAAAAGTAATAGCAGCAATGATTTAGAAAGCACTGATGTGGTCTCTGGATTTTTATATGATAAGCTTCAAAAAGAAGTCATCAATTTGAGGAAGACTTGTGAAACAAAAGACAATACTCTGCACACCAAAGATGAAGAAATTAAGATGCTCACAAAGAAAGTTGAGGCATTGACAAAGGCTATGGAAGTAGAATGGAAAAAAATGAAAAGAGAAATAGCTGCAAGAGAGAAAGAAGTTGCATCAATAAAATCCGATGATAGGAGGAAAAGCAGAAGTTCAAACTTCTCTAAAAGGGTGATGAAAAAACATTGA

Protein sequence

>Msa0277650

MVVNEEVPLVKPDVVVLEIDHLQNKLIEKVNELATCHGEIKAIRATEAKKDKAIEELRNEVSKMDARLRLKEDHLKNKNLEVKKLTDEKKDALAAQYAAESALRRLHTDQKEEDFYPFESVITPLEDEIKMYRTEITALQEDKKALERLTKSKELALLEAERILRSALERALIVEEVQNENFDLKRRIEICQEENKILEKSHRQKIVEVEKLSQTIHELEELILSNGATANLIRDYKRQISELQEEKRTLERELARVKVSANRIATVAANEWKDESDKVMPVRQWLEERKIMQAEMQRLKEKLAISERTAKAESQLKDKLKLRLKTLEEGLKQFSVNSNAFSVSPKADKSNILSFVTNNGGLRNRSTSQPRGSTVGNTLFQKPNIKGNIDSMAGNRKPGSITKMKYGSTENVLKKGIWASRNKFSDGGEKENEIQVNTGSVKTNADEDSKSNSSNDLESTDVVSGFLYDKLQKEVINLRKTCETKDNTLHTKDEEIKMLTKKVEALTKAMEVEWKKMKREIAAREKEVASIKSDDRRKSRSSNFSKRVMKKH*