Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0277650 | XP_013462928.1 | 96.920 | 552 | 17 | 0 | 1 | 552 | 1 | 552 | 0.0 | 1077 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0277650 | sp|Q8GYX3|MP705_ARATH | 56.154 | 520 | 182 | 7 | 15 | 529 | 8 | 486 | 6.06e-172 | 499 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0048010 | Msa0277650 | 0.908124 | 2.406915e-81 | -8.615850e-47 |
Msa0102870 | Msa0277650 | 0.813800 | 2.130365e-51 | -8.615850e-47 |
Msa0141420 | Msa0277650 | 0.903131 | 4.759473e-79 | -8.615850e-47 |
Msa0197880 | Msa0277650 | 0.832758 | 7.873420e-56 | -8.615850e-47 |
Msa0225220 | Msa0277650 | 0.804238 | 2.377893e-49 | -8.615850e-47 |
Msa0239650 | Msa0277650 | 0.909147 | 7.853639e-82 | -8.615850e-47 |
Msa0243600 | Msa0277650 | 0.813627 | 2.326219e-51 | -8.615850e-47 |
Msa0277650 | Msa0317240 | 0.882668 | 8.591415e-71 | -8.615850e-47 |
Msa0277650 | Msa0392380 | 0.812175 | 4.839228e-51 | -8.615850e-47 |
Msa0277650 | Msa0393440 | 0.809883 | 1.518106e-50 | -8.615850e-47 |
Msa0277650 | Msa0488790 | 0.813189 | 2.903203e-51 | -8.615850e-47 |
Msa0277650 | Msa0527610 | 0.983416 | 1.101636e-157 | -8.615850e-47 |
Msa0277650 | Msa1117910 | 0.862297 | 5.601162e-64 | -8.615850e-47 |
Msa0277650 | Msa1132870 | 0.802696 | 4.964418e-49 | -8.615850e-47 |
Msa0277650 | Msa1338370 | 0.816313 | 5.898033e-52 | -8.615850e-47 |
Msa0277650 | Msa1447210 | 0.909936 | 3.280255e-82 | -8.615850e-47 |
Msa0277650 | Msa1459360 | 0.803838 | 2.879985e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0277650 | MtrunA17_Chr2g0290411 | 96.920 | 552 | 17 | 0 | 1 | 552 | 1 | 552 | 0.0 | 1077 |
Msa0277650 | MtrunA17_Chr4g0076251 | 67.140 | 563 | 161 | 4 | 6 | 552 | 19 | 573 | 0.0 | 695 |
Msa0277650 | MtrunA17_Chr8g0391771 | 47.263 | 548 | 257 | 9 | 13 | 545 | 57 | 587 | 1.52e-151 | 448 |
Msa0277650 | MtrunA17_Chr1g0161371 | 47.005 | 551 | 254 | 9 | 13 | 545 | 52 | 582 | 2.82e-150 | 444 |
Msa0277650 | MtrunA17_Chr8g0344311 | 47.928 | 555 | 241 | 9 | 13 | 545 | 53 | 581 | 8.39e-149 | 441 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0277650 | AT4G17220.1 | 56.154 | 520 | 182 | 7 | 15 | 529 | 8 | 486 | 6.16e-173 | 499 |
Msa0277650 | AT1G68060.1 | 49.180 | 549 | 243 | 11 | 13 | 543 | 66 | 596 | 1.52e-157 | 464 |
Msa0277650 | AT1G24764.1 | 47.541 | 549 | 256 | 7 | 13 | 545 | 74 | 606 | 2.10e-157 | 464 |
Msa0277650 | AT1G24764.3 | 47.227 | 559 | 262 | 8 | 4 | 545 | 123 | 665 | 1.27e-155 | 461 |
Msa0277650 | AT2G01750.2 | 46.691 | 559 | 266 | 7 | 4 | 546 | 63 | 605 | 9.43e-153 | 452 |
Msa0277650 | AT2G01750.1 | 46.691 | 559 | 266 | 7 | 4 | 546 | 63 | 605 | 1.39e-152 | 451 |
Msa0277650 | AT1G14840.1 | 46.863 | 542 | 248 | 7 | 13 | 536 | 49 | 568 | 5.66e-151 | 446 |
Msa0277650 | AT1G14840.2 | 44.649 | 542 | 245 | 8 | 13 | 536 | 49 | 553 | 1.72e-135 | 406 |
Msa0277650 | AT1G24764.2 | 48.188 | 469 | 211 | 7 | 93 | 545 | 1 | 453 | 1.77e-135 | 402 |
Find 105 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGTCAGTTTCTTGACTTCT+AGG | 0.102098 | 2_3:+10362803 | None:intergenic |
TTTCCTTTGGTCTTCTATTT+TGG | 0.106408 | 2_3:+10364008 | None:intergenic |
TTTCCTTTGGTATCCAATTT+TGG | 0.142874 | 2_3:+10364113 | None:intergenic |
CTTAGCTTCAGTTGCCCTTA+TGG | 0.199525 | 2_3:+10363132 | None:intergenic |
ATTCTTTATGAAGAGAAAAT+TGG | 0.212662 | 2_3:-10360666 | Msa0277650:three_prime_UTR |
GGTAGAACCATATTTCATTT+TGG | 0.221595 | 2_3:+10361436 | None:intergenic |
TACCTTAATTTCTTCATCTT+TGG | 0.231823 | 2_3:+10361169 | None:intergenic |
TTCCAAAAGCCAAACATAAA+AGG | 0.248082 | 2_3:-10361503 | Msa0277650:CDS |
ACACTTACCATCACCAAAAT+TGG | 0.257334 | 2_3:-10364126 | Msa0277650:five_prime_UTR |
GAAGTTCAAACTTCTCTAAA+AGG | 0.264788 | 2_3:-10360794 | Msa0277650:intron |
TCTTCTAACCATTGCCTAAC+AGG | 0.277147 | 2_3:+10361883 | None:intergenic |
CACCAAAGATGAAGAAATTA+AGG | 0.291999 | 2_3:-10361171 | Msa0277650:intron |
ATATTCGATTTATCAGCTTT+TGG | 0.300457 | 2_3:+10361608 | None:intergenic |
AGCATAACCAAAATGAAATA+TGG | 0.322617 | 2_3:-10361443 | Msa0277650:CDS |
TTTACCAAGAAAGAAGAAAA+TGG | 0.324121 | 2_3:-10363851 | Msa0277650:exon |
CCTCAAGTTCATGAATTGTT+TGG | 0.350831 | 2_3:+10362200 | None:intergenic |
TCTACAGATTACAGCACTTC+AGG | 0.391041 | 2_3:-10362533 | Msa0277650:intron |
GAAAGCACTGATGTGGTCTC+TGG | 0.402489 | 2_3:-10361269 | Msa0277650:CDS |
GTGATAAGGTCATGCCTGTT+AGG | 0.415652 | 2_3:-10361897 | Msa0277650:CDS |
TCAGGAAGATAAGAAAGCTT+TGG | 0.418519 | 2_3:-10362515 | Msa0277650:CDS |
ACAATGGTGGATTGAGAAAC+AGG | 0.418721 | 2_3:-10361568 | Msa0277650:CDS |
AAAAGGCAACATAGACAGTA+TGG | 0.427289 | 2_3:-10361486 | Msa0277650:CDS |
TAGCATACTCCATTTGTTGT+TGG | 0.431105 | 2_3:-10364069 | Msa0277650:five_prime_UTR |
AGATCTCGATCCGTCTCTTC+AGG | 0.431500 | 2_3:+10362383 | None:intergenic |
ATCTCCAACACAACAACATC+TGG | 0.433211 | 2_3:+10363799 | None:intergenic |
AAAAGCAGAATCACAATTGA+AGG | 0.437230 | 2_3:-10361794 | Msa0277650:intron |
TATGGCTGGGAACCGAAAAC+CGG | 0.449172 | 2_3:-10361468 | Msa0277650:CDS |
AAGATTACACACAGATCAAA+AGG | 0.452964 | 2_3:-10362728 | Msa0277650:CDS |
GAGAAATGAAGTAAGTAAGA+TGG | 0.460243 | 2_3:-10362936 | Msa0277650:CDS |
ATGGTGAAATCAAGGCCATA+AGG | 0.461955 | 2_3:-10363147 | Msa0277650:CDS |
ACAGGAGGAGAACAAAATCT+TGG | 0.462576 | 2_3:-10362266 | Msa0277650:intron |
AGAAGGCTTAAAGCAATTCT+CGG | 0.473398 | 2_3:-10361657 | Msa0277650:CDS |
GAGGAGCTCATCTTATCAAA+TGG | 0.475247 | 2_3:-10362181 | Msa0277650:CDS |
CGCAACAGTTGCAATTCTGT+TGG | 0.479391 | 2_3:+10361942 | None:intergenic |
CATCAATAAAATCCGATGAT+AGG | 0.480394 | 2_3:-10360827 | Msa0277650:CDS |
TTTAGAGTCTTCATCAGCAT+TGG | 0.483845 | 2_3:+10361313 | None:intergenic |
TGGAGATACTGAAAATGCAT+TGG | 0.489587 | 2_3:+10361628 | None:intergenic |
AAAACACCAACAACAAATGA+TGG | 0.495818 | 2_3:+10364168 | None:intergenic |
TCTCAGACTCTGTAAGTTAG+TGG | 0.498944 | 2_3:+10360560 | None:intergenic |
TCACAAAAGTAGAACACCTA+TGG | 0.501557 | 2_3:-10363923 | Msa0277650:five_prime_UTR |
TAAAAGCCATCATTTGTTGT+TGG | 0.502135 | 2_3:-10364174 | Msa0277650:five_prime_UTR |
GGCAACATAGACAGTATGGC+TGG | 0.502574 | 2_3:-10361482 | Msa0277650:CDS |
TTTCCAACGGTAGATCCTCT+TGG | 0.502837 | 2_3:+10361533 | None:intergenic |
CATTTGCAAAACAAACTCAT+AGG | 0.508565 | 2_3:-10363772 | Msa0277650:intron |
CAAACCAGATGTTGTTGTGT+TGG | 0.510088 | 2_3:-10363803 | Msa0277650:CDS |
ATGGAAAGATGAAAGTGATA+AGG | 0.511209 | 2_3:-10361911 | Msa0277650:CDS |
CAAAGGCTATGGAAGTAGAA+TGG | 0.511214 | 2_3:-10360893 | Msa0277650:CDS |
CTTTATGAAGAGAAAATTGG+AGG | 0.512076 | 2_3:-10360663 | Msa0277650:three_prime_UTR |
CAACTGTTGCGGCTAATGAA+TGG | 0.512914 | 2_3:-10361930 | Msa0277650:CDS |
CTTCTCTGTATGTACAGAGT+TGG | 0.523530 | 2_3:+10360536 | None:intergenic |
TAAGTGTACTGTTGAGGCTA+AGG | 0.523957 | 2_3:+10364037 | None:intergenic |
TACATGCCATGGTGAAATCA+AGG | 0.527571 | 2_3:-10363155 | Msa0277650:CDS |
TGAGGCATTGACAAAGGCTA+TGG | 0.528361 | 2_3:-10360904 | Msa0277650:CDS |
TGCGAGACTAAGACTTAAAG+AGG | 0.531452 | 2_3:-10362912 | Msa0277650:CDS |
GGCGTGATGACACTTTCAAA+TGG | 0.532270 | 2_3:+10362691 | None:intergenic |
TAAAATTTCAGGAGGAGAAG+AGG | 0.539106 | 2_3:-10362002 | Msa0277650:intron |
CCAAACAATTCATGAACTTG+AGG | 0.539948 | 2_3:-10362200 | Msa0277650:CDS |
AACAAATGAAGTATGATCAC+TGG | 0.540299 | 2_3:+10363884 | None:intergenic |
AAGCCACCGGCAAAAGATTG+TGG | 0.540851 | 2_3:-10362239 | Msa0277650:CDS |
TATATATAGTATTATTCCAT+AGG | 0.547203 | 2_3:+10363907 | None:intergenic |
AGAAGAAAGAAAGATTATGC+AGG | 0.548152 | 2_3:-10361866 | Msa0277650:CDS |
CACTAGAGAGGGAATTAGCA+AGG | 0.557388 | 2_3:-10361978 | Msa0277650:CDS |
CAACAGAATTGCAACTGTTG+CGG | 0.557551 | 2_3:-10361941 | Msa0277650:CDS |
TTAAGTTTCGTAACGAACAA+TGG | 0.569896 | 2_3:-10361584 | Msa0277650:CDS |
CAATAAAATCCGATGATAGG+AGG | 0.573485 | 2_3:-10360824 | Msa0277650:CDS |
GAGACGGATCGAGATCTGCC+AGG | 0.577223 | 2_3:-10362377 | Msa0277650:intron |
TGGTGAAATCAAGGCCATAA+GGG | 0.577785 | 2_3:-10363146 | Msa0277650:CDS |
ATCTTAATCTCGTCTTCAAG+AGG | 0.579230 | 2_3:+10362670 | None:intergenic |
TGATGGAAAGTGCCCTATTG+AGG | 0.579242 | 2_3:+10363943 | None:intergenic |
GAAAATGGTTGTCAATGAAG+AGG | 0.581609 | 2_3:-10363836 | Msa0277650:exon |
AGACGAAAAGAAAGATGCGT+TGG | 0.582689 | 2_3:-10362782 | Msa0277650:CDS |
AACTGAAGCTAAGAAAGATA+AGG | 0.586496 | 2_3:-10363122 | Msa0277650:CDS |
GCTCACAAAGTCGAAAGAGT+TGG | 0.587191 | 2_3:-10362488 | Msa0277650:CDS |
GAAAGATAAGGCCATAGAAG+AGG | 0.588351 | 2_3:-10363110 | Msa0277650:intron |
ACAACATCTGGTTTGACAAG+AGG | 0.589315 | 2_3:+10363811 | None:intergenic |
TTATGCAGGCAGAGATGCAA+AGG | 0.590511 | 2_3:-10361852 | Msa0277650:CDS |
AGGAGAAGAGGACACTAGAG+AGG | 0.591941 | 2_3:-10361990 | Msa0277650:CDS |
CGCAGGATAAACTGAAGCTG+AGG | 0.593606 | 2_3:-10361694 | Msa0277650:intron |
AAAACTTTGACCTGAAGAGA+CGG | 0.598972 | 2_3:-10362393 | Msa0277650:CDS |
ATGGCTGGGAACCGAAAACC+GGG | 0.599697 | 2_3:-10361467 | Msa0277650:CDS |
AGGTCATGCCTGTTAGGCAA+TGG | 0.612732 | 2_3:-10361891 | Msa0277650:CDS |
GAAAGTTGAGGCATTGACAA+AGG | 0.615355 | 2_3:-10360910 | Msa0277650:CDS |
TTATGGCCTTGATTTCACCA+TGG | 0.621711 | 2_3:+10363149 | None:intergenic |
TCACCAAAATTGGATACCAA+AGG | 0.622755 | 2_3:-10364116 | Msa0277650:five_prime_UTR |
TAACCAAAATAGAAGACCAA+AGG | 0.624121 | 2_3:-10364011 | Msa0277650:five_prime_UTR |
AAGATAAGAAAGCTTTGGAA+CGG | 0.627349 | 2_3:-10362510 | Msa0277650:CDS |
TGATTTAGAAAGCACTGATG+TGG | 0.627887 | 2_3:-10361276 | Msa0277650:CDS |
AATGAACTTGCTACATGCCA+TGG | 0.628116 | 2_3:-10363166 | Msa0277650:CDS |
AGTTTCGTAACGAACAATGG+TGG | 0.630214 | 2_3:-10361581 | Msa0277650:CDS |
CAACCAAGAGGATCTACCGT+TGG | 0.630663 | 2_3:-10361536 | Msa0277650:CDS |
ATAATCACGAATGAGATTAG+CGG | 0.637427 | 2_3:+10362153 | None:intergenic |
AAATCTTGGAGAAAAGCCAC+CGG | 0.637665 | 2_3:-10362252 | Msa0277650:CDS |
TTATGGTAAGTGTACTGTTG+AGG | 0.644306 | 2_3:+10364031 | None:intergenic |
GCAACATAGACAGTATGGCT+GGG | 0.648667 | 2_3:-10361481 | Msa0277650:CDS |
TGGCATTGCTTGAAGCAGAG+AGG | 0.652208 | 2_3:-10362468 | Msa0277650:CDS |
TTGGAACAAAGTGTTTCCAA+CGG | 0.656799 | 2_3:+10361520 | None:intergenic |
ATCACGAATGAGATTAGCGG+TGG | 0.659965 | 2_3:+10362156 | None:intergenic |
GGAGAAGAGGACACTAGAGA+GGG | 0.660251 | 2_3:-10361989 | Msa0277650:CDS |
AATGAGATACAGGTGAACAC+AGG | 0.676366 | 2_3:-10361347 | Msa0277650:CDS |
TGATGGTAAGTGTACTGTTG+AGG | 0.679865 | 2_3:+10364136 | None:intergenic |
GATGCTCACAAAGAAAGTTG+AGG | 0.680066 | 2_3:-10360922 | Msa0277650:CDS |
ACTAGAGAGGGAATTAGCAA+GGG | 0.681716 | 2_3:-10361977 | Msa0277650:CDS |
GATTAAGATGTATAGAACTG+AGG | 0.694125 | 2_3:-10362656 | Msa0277650:intron |
AGGTCTACATCACAACCAAG+AGG | 0.700161 | 2_3:-10361548 | Msa0277650:CDS |
TGATTCTGCAGCATATTGTG+CGG | 0.724358 | 2_3:+10362759 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAGGTATTTAAAAAAATAA+AGG | - | chr2_3:10361168-10361187 | Msa0277650:intron | 10.0% |
!!! | TAATTTATTTTTTTCTATGT+AGG | - | chr2_3:10362904-10362923 | Msa0277650:CDS | 10.0% |
!!! | TATATAAAGTATTTTTCCTT+TGG | + | chr2_3:10360683-10360702 | None:intergenic | 15.0% |
!! | TATATATAGTATTATTCCAT+AGG | + | chr2_3:10360771-10360790 | None:intergenic | 15.0% |
!! | TTAAAAAAATCAATAGATCA+AGG | - | chr2_3:10361350-10361369 | Msa0277650:CDS | 15.0% |
!! | TAAAAAAATCAATAGATCAA+GGG | - | chr2_3:10361351-10361370 | Msa0277650:CDS | 15.0% |
!!! | CTATTTTTACTCCTTATTTT+TGG | - | chr2_3:10361047-10361066 | Msa0277650:intron | 20.0% |
!!! | TTTCTTTTACACATTAACAA+TGG | + | chr2_3:10361213-10361232 | None:intergenic | 20.0% |
!! | AACAAATAATGTTCTAACTT+TGG | + | chr2_3:10361645-10361664 | None:intergenic | 20.0% |
!!! | CATAGAATTTATCATTGTTT+TGG | + | chr2_3:10361818-10361837 | None:intergenic | 20.0% |
!! | TAAAAAAAGAAGTCAGATAA+CGG | + | chr2_3:10363627-10363646 | None:intergenic | 20.0% |
!!! | TTTAGTTCTATGTAACAAAA+GGG | + | chr2_3:10363713-10363732 | None:intergenic | 20.0% |
!! | ATTCTTTATGAAGAGAAAAT+TGG | - | chr2_3:10364009-10364028 | Msa0277650:five_prime_UTR | 20.0% |
!! | ATACTATAGTGTTTTTCCTT+TGG | + | chr2_3:10360578-10360597 | None:intergenic | 25.0% |
! | ACAAAAATACCAACAACAAA+TGG | + | chr2_3:10360618-10360637 | None:intergenic | 25.0% |
! | TTTACCAAGAAAGAAGAAAA+TGG | - | chr2_3:10360824-10360843 | Msa0277650:CDS | 25.0% |
! | ATTTGCTTCATCATTTGATT+AGG | - | chr2_3:10360956-10360975 | Msa0277650:intron | 25.0% |
!!! | GCACTTTTTTTTTTATCGTA+AGG | - | chr2_3:10361107-10361126 | Msa0277650:intron | 25.0% |
!! | TTAAATACCTTTTGTTACCT+TGG | + | chr2_3:10361160-10361179 | None:intergenic | 25.0% |
! | AACTAGTGACAATTTATTCA+TGG | - | chr2_3:10361292-10361311 | Msa0277650:CDS | 25.0% |
!! | ATCACAGTTTTCTTTGAATA+TGG | - | chr2_3:10361410-10361429 | Msa0277650:CDS | 25.0% |
! | AAAAACAAATACCTCTTCTA+TGG | + | chr2_3:10361579-10361598 | None:intergenic | 25.0% |
! | GTTAGTGTTATCATCTTTAA+AGG | + | chr2_3:10362112-10362131 | None:intergenic | 25.0% |
! | ATAGAAACTATACACGAAAA+TGG | + | chr2_3:10362343-10362362 | None:intergenic | 25.0% |
! | TGTATAGTTTCTATATCGAA+CGG | - | chr2_3:10362349-10362368 | Msa0277650:intron | 25.0% |
!! | TTATACAACTTTTCATGAAC+AGG | - | chr2_3:10362391-10362410 | Msa0277650:CDS | 25.0% |
!!! | TGGTTTTAGCATAAAATTTC+AGG | - | chr2_3:10362662-10362681 | Msa0277650:CDS | 25.0% |
!! | TTTTAGCATAAAATTTCAGG+AGG | - | chr2_3:10362665-10362684 | Msa0277650:CDS | 25.0% |
!! | ATATTCGATTTATCAGCTTT+TGG | + | chr2_3:10363070-10363089 | None:intergenic | 25.0% |
! | AGCATAACCAAAATGAAATA+TGG | - | chr2_3:10363232-10363251 | Msa0277650:intron | 25.0% |
!!! | ACCTTTTTTCAACACATTTT+CGG | + | chr2_3:10363263-10363282 | None:intergenic | 25.0% |
!! | ATGTGTTGAAAAAAGGTATA+TGG | - | chr2_3:10363266-10363285 | Msa0277650:intron | 25.0% |
!! | TGTGTTGAAAAAAGGTATAT+GGG | - | chr2_3:10363267-10363286 | Msa0277650:intron | 25.0% |
!! | TCAAGAAACAAATTTTCTGA+TGG | - | chr2_3:10363292-10363311 | Msa0277650:intron | 25.0% |
! | TGAAAAAGAAAATGAGATAC+AGG | - | chr2_3:10363318-10363337 | Msa0277650:intron | 25.0% |
! | AAAAAGAAGTCATCAATTTG+AGG | - | chr2_3:10363449-10363468 | Msa0277650:intron | 25.0% |
! | TACCTTAATTTCTTCATCTT+TGG | + | chr2_3:10363509-10363528 | None:intergenic | 25.0% |
!!! | CTTTAGTTCTATGTAACAAA+AGG | + | chr2_3:10363714-10363733 | None:intergenic | 25.0% |
! | AGGTTAACTATAGAAGTAAA+AGG | + | chr2_3:10363943-10363962 | None:intergenic | 25.0% |
!! | GTAATTTTATAGCATTGTTC+AGG | + | chr2_3:10363963-10363982 | None:intergenic | 25.0% |
! | AATGCTATAAAATTACTGCA+GGG | - | chr2_3:10363967-10363986 | Msa0277650:five_prime_UTR | 25.0% |
!! | TAAAAGCCATCATTTGTTGT+TGG | - | chr2_3:10360501-10360520 | Msa0277650:three_prime_UTR | 30.0% |
AAAACACCAACAACAAATGA+TGG | + | chr2_3:10360510-10360529 | None:intergenic | 30.0% | |
! | TTTCCTTTGGTATCCAATTT+TGG | + | chr2_3:10360565-10360584 | None:intergenic | 30.0% |
!!! | TTGGTCTTCTATTTTGGTTA+TGG | + | chr2_3:10360664-10360683 | None:intergenic | 30.0% |
TAACCAAAATAGAAGACCAA+AGG | - | chr2_3:10360664-10360683 | Msa0277650:three_prime_UTR | 30.0% | |
!! | TTTCCTTTGGTCTTCTATTT+TGG | + | chr2_3:10360670-10360689 | None:intergenic | 30.0% |
! | TTTTTGTACTTAGCCTCAAT+AGG | - | chr2_3:10360719-10360738 | Msa0277650:intron | 30.0% |
! | TTTTGTACTTAGCCTCAATA+GGG | - | chr2_3:10360720-10360739 | Msa0277650:intron | 30.0% |
AACAAATGAAGTATGATCAC+TGG | + | chr2_3:10360794-10360813 | None:intergenic | 30.0% | |
! | ACAACCATTTTCTTCTTTCT+TGG | + | chr2_3:10360831-10360850 | None:intergenic | 30.0% |
CATTTGCAAAACAAACTCAT+AGG | - | chr2_3:10360903-10360922 | Msa0277650:CDS | 30.0% | |
AACACCAATGGAAAATTAGA+TGG | - | chr2_3:10360992-10361011 | Msa0277650:intron | 30.0% | |
! | TTTAAGTGAACTCTTTTCCA+AGG | - | chr2_3:10361140-10361159 | Msa0277650:intron | 30.0% |
! | CTTTTACACATTAACAATGG+TGG | + | chr2_3:10361210-10361229 | None:intergenic | 30.0% |
TCATGACTAAAAAGTGATAG+TGG | - | chr2_3:10361268-10361287 | Msa0277650:CDS | 30.0% | |
AAAAATCAATAGATCAAGGG+AGG | - | chr2_3:10361354-10361373 | Msa0277650:CDS | 30.0% | |
!! | GTTTTAATCTGTTGCAGAAA+AGG | - | chr2_3:10361484-10361503 | Msa0277650:CDS | 30.0% |
AACTGAAGCTAAGAAAGATA+AGG | - | chr2_3:10361553-10361572 | Msa0277650:CDS | 30.0% | |
GAGAAATGAAGTAAGTAAGA+TGG | - | chr2_3:10361739-10361758 | Msa0277650:intron | 30.0% | |
AGAGGATCATCTTAAAAACA+AGG | - | chr2_3:10361781-10361800 | Msa0277650:intron | 30.0% | |
AAGATTACACACAGATCAAA+AGG | - | chr2_3:10361947-10361966 | Msa0277650:CDS | 30.0% | |
GATTAAGATGTATAGAACTG+AGG | - | chr2_3:10362019-10362038 | Msa0277650:intron | 30.0% | |
AACGCATCATTAATGGAAAT+TGG | + | chr2_3:10362055-10362074 | None:intergenic | 30.0% | |
CATTGTAAACGCATCATTAA+TGG | + | chr2_3:10362062-10362081 | None:intergenic | 30.0% | |
!! | AAGATAAGAAAGCTTTGGAA+CGG | - | chr2_3:10362165-10362184 | Msa0277650:CDS | 30.0% |
AACATAAGAAGATATATGCC+TGG | + | chr2_3:10362319-10362338 | None:intergenic | 30.0% | |
ATAATCACGAATGAGATTAG+CGG | + | chr2_3:10362525-10362544 | None:intergenic | 30.0% | |
! | TTTTGGACTAACTTTTGCAT+AGG | - | chr2_3:10362604-10362623 | Msa0277650:intron | 30.0% |
! | CATAGGAATTTTGTATCTAC+TGG | - | chr2_3:10362621-10362640 | Msa0277650:intron | 30.0% |
GGTTTATCTATACAGTAACA+TGG | - | chr2_3:10362642-10362661 | Msa0277650:intron | 30.0% | |
ATGGAAAGATGAAAGTGATA+AGG | - | chr2_3:10362764-10362783 | Msa0277650:CDS | 30.0% | |
AGAAGAAAGAAAGATTATGC+AGG | - | chr2_3:10362809-10362828 | Msa0277650:intron | 30.0% | |
AAAAGCAGAATCACAATTGA+AGG | - | chr2_3:10362881-10362900 | Msa0277650:intron | 30.0% | |
!! | ATACGGTATTTATTTTTCGC+AGG | - | chr2_3:10362964-10362983 | Msa0277650:intron | 30.0% |
TTAAGTTTCGTAACGAACAA+TGG | - | chr2_3:10363091-10363110 | Msa0277650:intron | 30.0% | |
TTCCAAAAGCCAAACATAAA+AGG | - | chr2_3:10363172-10363191 | Msa0277650:CDS | 30.0% | |
! | TCTATGTTGCCTTTTATGTT+TGG | + | chr2_3:10363184-10363203 | None:intergenic | 30.0% |
! | GGTAGAACCATATTTCATTT+TGG | + | chr2_3:10363242-10363261 | None:intergenic | 30.0% |
ACCGAAAATGTGTTGAAAAA+AGG | - | chr2_3:10363259-10363278 | Msa0277650:intron | 30.0% | |
! | AGAAACAAATTTTCTGATGG+TGG | - | chr2_3:10363295-10363314 | Msa0277650:intron | 30.0% |
CACCAAAGATGAAGAAATTA+AGG | - | chr2_3:10363504-10363523 | Msa0277650:intron | 30.0% | |
AGATGAAGAAATTAAGGTAC+TGG | - | chr2_3:10363510-10363529 | Msa0277650:intron | 30.0% | |
TTGTCAATCGTAGAAAATAG+TGG | - | chr2_3:10363556-10363575 | Msa0277650:intron | 30.0% | |
CATCAATAAAATCCGATGAT+AGG | - | chr2_3:10363848-10363867 | Msa0277650:exon | 30.0% | |
GAAGTTCAAACTTCTCTAAA+AGG | - | chr2_3:10363881-10363900 | Msa0277650:five_prime_UTR | 30.0% | |
CAATGCTATAAAATTACTGC+AGG | - | chr2_3:10363966-10363985 | Msa0277650:five_prime_UTR | 30.0% | |
CTTTATGAAGAGAAAATTGG+AGG | - | chr2_3:10364012-10364031 | Msa0277650:five_prime_UTR | 30.0% | |
ACACTTACCATCACCAAAAT+TGG | - | chr2_3:10360549-10360568 | Msa0277650:three_prime_UTR | 35.0% | |
!! | TTGGTATCCAATTTTGGTGA+TGG | + | chr2_3:10360559-10360578 | None:intergenic | 35.0% |
TCACCAAAATTGGATACCAA+AGG | - | chr2_3:10360559-10360578 | Msa0277650:three_prime_UTR | 35.0% | |
!! | TAGCATACTCCATTTGTTGT+TGG | - | chr2_3:10360606-10360625 | Msa0277650:three_prime_UTR | 35.0% |
TTATGGTAAGTGTACTGTTG+AGG | + | chr2_3:10360647-10360666 | None:intergenic | 35.0% | |
!! | TAGGTGTTCTACTTTTGTGA+TGG | + | chr2_3:10360752-10360771 | None:intergenic | 35.0% |
TCACAAAAGTAGAACACCTA+TGG | - | chr2_3:10360752-10360771 | Msa0277650:intron | 35.0% | |
GAAAATGGTTGTCAATGAAG+AGG | - | chr2_3:10360839-10360858 | Msa0277650:CDS | 35.0% | |
TCATGCATGTAAAACACCAA+TGG | - | chr2_3:10360980-10360999 | Msa0277650:intron | 35.0% | |
! | GAGTCCATCTAATTTTCCAT+TGG | + | chr2_3:10360999-10361018 | None:intergenic | 35.0% |
CTGACACAAGACCAAAAATA+AGG | + | chr2_3:10361061-10361080 | None:intergenic | 35.0% | |
!!! | TATTTTTGGTCTTGTGTCAG+TGG | - | chr2_3:10361061-10361080 | Msa0277650:intron | 35.0% |
! | CTCTTTTCCAAGGTAACAAA+AGG | - | chr2_3:10361150-10361169 | Msa0277650:intron | 35.0% |
ATCTTAATCTCGTCTTCAAG+AGG | + | chr2_3:10362008-10362027 | None:intergenic | 35.0% | |
TCAGGAAGATAAGAAAGCTT+TGG | - | chr2_3:10362160-10362179 | Msa0277650:CDS | 35.0% | |
AAAACTTTGACCTGAAGAGA+CGG | - | chr2_3:10362282-10362301 | Msa0277650:intron | 35.0% | |
! | TACAACTTTTCATGAACAGG+AGG | - | chr2_3:10362394-10362413 | Msa0277650:CDS | 35.0% |
CCTCAAGTTCATGAATTGTT+TGG | + | chr2_3:10362478-10362497 | None:intergenic | 35.0% | |
CCAAACAATTCATGAACTTG+AGG | - | chr2_3:10362475-10362494 | Msa0277650:CDS | 35.0% | |
! | TGATATGACGACTTGCATTT+TGG | - | chr2_3:10362587-10362606 | Msa0277650:intron | 35.0% |
TAAAATTTCAGGAGGAGAAG+AGG | - | chr2_3:10362673-10362692 | Msa0277650:CDS | 35.0% | |
!!! | TTTTGCTGTTCTCTCTGATA+TGG | + | chr2_3:10362865-10362884 | None:intergenic | 35.0% |
AGAAGGCTTAAAGCAATTCT+CGG | - | chr2_3:10363018-10363037 | Msa0277650:intron | 35.0% | |
TGGAGATACTGAAAATGCAT+TGG | + | chr2_3:10363050-10363069 | None:intergenic | 35.0% | |
! | TTGGAACAAAGTGTTTCCAA+CGG | + | chr2_3:10363158-10363177 | None:intergenic | 35.0% |
!!! | TGCCTTTTATGTTTGGCTTT+TGG | + | chr2_3:10363177-10363196 | None:intergenic | 35.0% |
AAAAGGCAACATAGACAGTA+TGG | - | chr2_3:10363189-10363208 | Msa0277650:intron | 35.0% | |
!!! | TTCATTTTGGTTATGCTACC+CGG | + | chr2_3:10363229-10363248 | None:intergenic | 35.0% |
! | TTTAGAGTCTTCATCAGCAT+TGG | + | chr2_3:10363365-10363384 | None:intergenic | 35.0% |
!! | TGATTTAGAAAGCACTGATG+TGG | - | chr2_3:10363399-10363418 | Msa0277650:intron | 35.0% |
CGATTGACAACTTTGATATG+AGG | + | chr2_3:10363546-10363565 | None:intergenic | 35.0% | |
CAATAAAATCCGATGATAGG+AGG | - | chr2_3:10363851-10363870 | Msa0277650:exon | 35.0% | |
TGATGGTAAGTGTACTGTTG+AGG | + | chr2_3:10360542-10360561 | None:intergenic | 40.0% | |
TAAGTGTACTGTTGAGGCTA+AGG | + | chr2_3:10360536-10360555 | None:intergenic | 40.0% | |
! | ACAACATCTGGTTTGACAAG+AGG | + | chr2_3:10360867-10360886 | None:intergenic | 40.0% |
CAAACCAGATGTTGTTGTGT+TGG | - | chr2_3:10360872-10360891 | Msa0277650:CDS | 40.0% | |
ATCTCCAACACAACAACATC+TGG | + | chr2_3:10360879-10360898 | None:intergenic | 40.0% | |
! | TAGATGGACTCATTGTGTCA+AGG | - | chr2_3:10361008-10361027 | Msa0277650:intron | 40.0% |
!! | AATGAACTTGCTACATGCCA+TGG | - | chr2_3:10361509-10361528 | Msa0277650:CDS | 40.0% |
TACATGCCATGGTGAAATCA+AGG | - | chr2_3:10361520-10361539 | Msa0277650:CDS | 40.0% | |
! | TTATGGCCTTGATTTCACCA+TGG | + | chr2_3:10361529-10361548 | None:intergenic | 40.0% |
ATGGTGAAATCAAGGCCATA+AGG | - | chr2_3:10361528-10361547 | Msa0277650:CDS | 40.0% | |
TGGTGAAATCAAGGCCATAA+GGG | - | chr2_3:10361529-10361548 | Msa0277650:CDS | 40.0% | |
GAAAGATAAGGCCATAGAAG+AGG | - | chr2_3:10361565-10361584 | Msa0277650:CDS | 40.0% | |
TGCGAGACTAAGACTTAAAG+AGG | - | chr2_3:10361763-10361782 | Msa0277650:intron | 40.0% | |
CTGTCAGTTTCTTGACTTCT+AGG | + | chr2_3:10361875-10361894 | None:intergenic | 40.0% | |
AGACGAAAAGAAAGATGCGT+TGG | - | chr2_3:10361893-10361912 | Msa0277650:CDS | 40.0% | |
TGATTCTGCAGCATATTGTG+CGG | + | chr2_3:10361919-10361938 | None:intergenic | 40.0% | |
!! | GAAGTGCTGTAATCTGTAGA+TGG | + | chr2_3:10362142-10362161 | None:intergenic | 40.0% |
TCTACAGATTACAGCACTTC+AGG | - | chr2_3:10362142-10362161 | Msa0277650:CDS | 40.0% | |
ACAGGAGGAGAACAAAATCT+TGG | - | chr2_3:10362409-10362428 | Msa0277650:CDS | 40.0% | |
AAATCTTGGAGAAAAGCCAC+CGG | - | chr2_3:10362423-10362442 | Msa0277650:CDS | 40.0% | |
! | CAACTTCCACAATCTTTTGC+CGG | + | chr2_3:10362445-10362464 | None:intergenic | 40.0% |
GAGGAGCTCATCTTATCAAA+TGG | - | chr2_3:10362494-10362513 | Msa0277650:CDS | 40.0% | |
CAGATTTCTGAGTTGCAAGT+AGG | - | chr2_3:10362551-10362570 | Msa0277650:intron | 40.0% | |
ACTAGAGAGGGAATTAGCAA+GGG | - | chr2_3:10362698-10362717 | Msa0277650:CDS | 40.0% | |
CAACAGAATTGCAACTGTTG+CGG | - | chr2_3:10362734-10362753 | Msa0277650:CDS | 40.0% | |
TCTTCTAACCATTGCCTAAC+AGG | + | chr2_3:10362795-10362814 | None:intergenic | 40.0% | |
AGGCTAAAAACGCTTGAAGA+AGG | - | chr2_3:10363001-10363020 | Msa0277650:intron | 40.0% | |
AGTTTCGTAACGAACAATGG+TGG | - | chr2_3:10363094-10363113 | Msa0277650:intron | 40.0% | |
!! | ACAATGGTGGATTGAGAAAC+AGG | - | chr2_3:10363107-10363126 | Msa0277650:intron | 40.0% |
AATGAGATACAGGTGAACAC+AGG | - | chr2_3:10363328-10363347 | Msa0277650:intron | 40.0% | |
GATGCTCACAAAGAAAGTTG+AGG | - | chr2_3:10363753-10363772 | Msa0277650:intron | 40.0% | |
!! | GAAAGTTGAGGCATTGACAA+AGG | - | chr2_3:10363765-10363784 | Msa0277650:intron | 40.0% |
CAAAGGCTATGGAAGTAGAA+TGG | - | chr2_3:10363782-10363801 | Msa0277650:CDS | 40.0% | |
!! | TCTGCTTTTCCTCCTATCAT+CGG | + | chr2_3:10363863-10363882 | None:intergenic | 40.0% |
TCTCAGACTCTGTAAGTTAG+TGG | + | chr2_3:10364118-10364137 | None:intergenic | 40.0% | |
CTTCTCTGTATGTACAGAGT+TGG | + | chr2_3:10364142-10364161 | None:intergenic | 40.0% | |
!! | TGATGGAAAGTGCCCTATTG+AGG | + | chr2_3:10360735-10360754 | None:intergenic | 45.0% |
!! | TTGGTCTTGTGTCAGTGGTA+AGG | - | chr2_3:10361066-10361085 | Msa0277650:intron | 45.0% |
CTTAGCTTCAGTTGCCCTTA+TGG | + | chr2_3:10361546-10361565 | None:intergenic | 45.0% | |
GGCGTGATGACACTTTCAAA+TGG | + | chr2_3:10361987-10362006 | None:intergenic | 45.0% | |
GCTCACAAAGTCGAAAGAGT+TGG | - | chr2_3:10362187-10362206 | Msa0277650:CDS | 45.0% | |
ATCACGAATGAGATTAGCGG+TGG | + | chr2_3:10362522-10362541 | None:intergenic | 45.0% | |
CACTAGAGAGGGAATTAGCA+AGG | - | chr2_3:10362697-10362716 | Msa0277650:CDS | 45.0% | |
CGCAACAGTTGCAATTCTGT+TGG | + | chr2_3:10362736-10362755 | None:intergenic | 45.0% | |
CAACTGTTGCGGCTAATGAA+TGG | - | chr2_3:10362745-10362764 | Msa0277650:CDS | 45.0% | |
GTGATAAGGTCATGCCTGTT+AGG | - | chr2_3:10362778-10362797 | Msa0277650:CDS | 45.0% | |
TTATGCAGGCAGAGATGCAA+AGG | - | chr2_3:10362823-10362842 | Msa0277650:intron | 45.0% | |
AGGTCTACATCACAACCAAG+AGG | - | chr2_3:10363127-10363146 | Msa0277650:CDS | 45.0% | |
TTTCCAACGGTAGATCCTCT+TGG | + | chr2_3:10363145-10363164 | None:intergenic | 45.0% | |
GCAACATAGACAGTATGGCT+GGG | - | chr2_3:10363194-10363213 | Msa0277650:intron | 45.0% | |
! | TGGTTATGCTACCCGGTTTT+CGG | + | chr2_3:10363222-10363241 | None:intergenic | 45.0% |
!! | TGAGGCATTGACAAAGGCTA+TGG | - | chr2_3:10363771-10363790 | Msa0277650:intron | 45.0% |
!!! | TAGTAATAAATAATTTTATA+CGG | - | chr2_3:10362947-10362966 | Msa0277650:intron | 5.0% |
TGGCATTGCTTGAAGCAGAG+AGG | - | chr2_3:10362207-10362226 | Msa0277650:CDS | 50.0% | |
AGATCTCGATCCGTCTCTTC+AGG | + | chr2_3:10362295-10362314 | None:intergenic | 50.0% | |
AAGCCACCGGCAAAAGATTG+TGG | - | chr2_3:10362436-10362455 | Msa0277650:CDS | 50.0% | |
! | CTTCCACAATCTTTTGCCGG+TGG | + | chr2_3:10362442-10362461 | None:intergenic | 50.0% |
AGGAGAAGAGGACACTAGAG+AGG | - | chr2_3:10362685-10362704 | Msa0277650:CDS | 50.0% | |
GGAGAAGAGGACACTAGAGA+GGG | - | chr2_3:10362686-10362705 | Msa0277650:CDS | 50.0% | |
AGGTCATGCCTGTTAGGCAA+TGG | - | chr2_3:10362784-10362803 | Msa0277650:CDS | 50.0% | |
CGCAGGATAAACTGAAGCTG+AGG | - | chr2_3:10362981-10363000 | Msa0277650:intron | 50.0% | |
CAACCAAGAGGATCTACCGT+TGG | - | chr2_3:10363139-10363158 | Msa0277650:CDS | 50.0% | |
GGCAACATAGACAGTATGGC+TGG | - | chr2_3:10363193-10363212 | Msa0277650:intron | 50.0% | |
TATGGCTGGGAACCGAAAAC+CGG | - | chr2_3:10363207-10363226 | Msa0277650:intron | 50.0% | |
!! | GAAAGCACTGATGTGGTCTC+TGG | - | chr2_3:10363406-10363425 | Msa0277650:intron | 50.0% |
ATGGCTGGGAACCGAAAACC+GGG | - | chr2_3:10363208-10363227 | Msa0277650:intron | 55.0% | |
GAGACGGATCGAGATCTGCC+AGG | - | chr2_3:10362298-10362317 | Msa0277650:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 10360484 | 10364213 | 10360484 | ID=Msa0277650;Name=Msa0277650 |
chr2_3 | mRNA | 10360484 | 10364213 | 10360484 | ID=Msa0277650-mRNA-1;Parent=Msa0277650;Name=Msa0277650-mRNA-1;_AED=0.09;_eAED=0.09;_QI=359|1|1|1|1|1|10|207|552 |
chr2_3 | exon | 10360484 | 10360709 | 10360484 | ID=Msa0277650-mRNA-1:exon:4585;Parent=Msa0277650-mRNA-1 |
chr2_3 | exon | 10360795 | 10360943 | 10360795 | ID=Msa0277650-mRNA-1:exon:4584;Parent=Msa0277650-mRNA-1 |
chr2_3 | exon | 10361172 | 10361711 | 10361172 | ID=Msa0277650-mRNA-1:exon:4583;Parent=Msa0277650-mRNA-1 |
chr2_3 | exon | 10361795 | 10362013 | 10361795 | ID=Msa0277650-mRNA-1:exon:4582;Parent=Msa0277650-mRNA-1 |
chr2_3 | exon | 10362129 | 10362284 | 10362129 | ID=Msa0277650-mRNA-1:exon:4581;Parent=Msa0277650-mRNA-1 |
chr2_3 | exon | 10362378 | 10362548 | 10362378 | ID=Msa0277650-mRNA-1:exon:4580;Parent=Msa0277650-mRNA-1 |
chr2_3 | exon | 10362657 | 10362827 | 10362657 | ID=Msa0277650-mRNA-1:exon:4579;Parent=Msa0277650-mRNA-1 |
chr2_3 | exon | 10362895 | 10362960 | 10362895 | ID=Msa0277650-mRNA-1:exon:4578;Parent=Msa0277650-mRNA-1 |
chr2_3 | exon | 10363111 | 10363196 | 10363111 | ID=Msa0277650-mRNA-1:exon:4577;Parent=Msa0277650-mRNA-1 |
chr2_3 | exon | 10363773 | 10364213 | 10363773 | ID=Msa0277650-mRNA-1:exon:4576;Parent=Msa0277650-mRNA-1 |
chr2_3 | five_prime_UTR | 10363855 | 10364213 | 10363855 | ID=Msa0277650-mRNA-1:five_prime_utr;Parent=Msa0277650-mRNA-1 |
chr2_3 | CDS | 10363773 | 10363854 | 10363773 | ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1 |
chr2_3 | CDS | 10363111 | 10363196 | 10363111 | ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1 |
chr2_3 | CDS | 10362895 | 10362960 | 10362895 | ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1 |
chr2_3 | CDS | 10362657 | 10362827 | 10362657 | ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1 |
chr2_3 | CDS | 10362378 | 10362548 | 10362378 | ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1 |
chr2_3 | CDS | 10362129 | 10362284 | 10362129 | ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1 |
chr2_3 | CDS | 10361795 | 10362013 | 10361795 | ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1 |
chr2_3 | CDS | 10361172 | 10361711 | 10361172 | ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1 |
chr2_3 | CDS | 10360795 | 10360943 | 10360795 | ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1 |
chr2_3 | CDS | 10360691 | 10360709 | 10360691 | ID=Msa0277650-mRNA-1:cds;Parent=Msa0277650-mRNA-1 |
chr2_3 | three_prime_UTR | 10360484 | 10360690 | 10360484 | ID=Msa0277650-mRNA-1:three_prime_utr;Parent=Msa0277650-mRNA-1 |
Gene Sequence |
Protein sequence |