AlfalfaGEDB | Msa1132960

M. sativa cultivar zhongmu-4 / Msa1132960

KEGG: -
GO: -
PFAM: PF04424.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1132960	KEH27444.1	94.351	655	35	2	23	676	22	675	0.0	1231

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1132960	sp\|Q5BJQ2\|MINY1_RAT	44.186	172	89	3	35	202	112	280	8.51e-39	153
Msa1132960	sp\|Q5BJQ2\|MINY1_RAT	50.000	86	43	0	547	632	293	378	7.59e-19	93.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1132960	A0A072UCE3	94.351	655	35	2	23	676	22	675	0.0	1231

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0614380	Msa1132960	0.814214	1.726859e-51	-8.615850e-47
Msa0807040	Msa1132960	0.951178	3.525898e-109	-8.615850e-47
Msa0832980	Msa1132960	0.943231	1.745831e-102	-8.615850e-47
Msa1132960	Msa1214170	0.804149	2.480792e-49	-8.615850e-47
Msa1132960	Msa1360020	0.807010	6.229237e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1132960	MtrunA17_Chr5g0398191	94.316	651	35	2	23	672	22	671	0.0	1224

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1132960	AT4G11860.1	72.112	251	68	2	28	277	18	267	1.16e-109	347
Msa1132960	AT4G22960.1	36.364	242	102	4	39	280	6	195	1.39e-35	141
Msa1132960	AT4G22960.1	41.304	138	74	1	514	651	333	463	6.69e-29	122

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Find 212 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAGTGTACCACAGTGGC+AGG	0.536901	7_3:+85856081	Msa1132960:three_prime_UTR
AAATCAAATATGGCACACTC+TGG	0.599733	7_3:-85852202	None:intergenic
AAATCAGCCTGATCTGGTTT+GGG	0.426513	7_3:+85854633	Msa1132960:CDS
AAATTATCAAAGTGTAGGGC+TGG	0.426459	7_3:-85856245	None:intergenic
AACATTATTCTCATCCCAGG+TGG	0.684945	7_3:-85855063	None:intergenic
AACGAACGTGCTCATCACCA+TGG	0.659518	7_3:+85850142	Msa1132960:exon
AACTAAAATTATCAAAGTGT+AGG	0.556093	7_3:-85856250	None:intergenic
AAGTAAATAGTGTACCACAG+TGG	0.788077	7_3:+85856077	Msa1132960:three_prime_UTR
AAGTCCTATAATGCCCTTAT+GGG	0.386156	7_3:+85852984	Msa1132960:CDS
AATCGTGAACCTGTTTATGA+AGG	0.525418	7_3:+85853944	Msa1132960:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAAATAATAATGAGAGG+GGG	+	chr7_3:85849893-85849912	Msa1132960:five_prime_UTR	30.0%
TAGTATCAATTGTTACGGAA+TGG	-	chr7_3:85849990-85850009	None:intergenic	30.0%
TAGAAATGAAATGAAAGGTG+TGG	-	chr7_3:85850074-85850093	None:intergenic	30.0%
ACCAAAATCATTCAGTTTCT+TGG	+	chr7_3:85850308-85850327	Msa1132960:CDS	30.0%
TTGGAAATGTACAACAAACA+CGG	+	chr7_3:85850752-85850771	Msa1132960:intron	30.0%
ACAAAATAGCAACTAATGTG+TGG	-	chr7_3:85850903-85850922	None:intergenic	30.0%
TCATGTTTCTTGAACAGAAT+TGG	+	chr7_3:85851102-85851121	Msa1132960:intron	30.0%
TCGACTAATAAGTTCAAAAC+GGG	-	chr7_3:85851133-85851152	None:intergenic	30.0%
GTCGACTAATAAGTTCAAAA+CGG	-	chr7_3:85851134-85851153	None:intergenic	30.0%
AATGCTTATTGATGCATCTT+TGG	-	chr7_3:85851179-85851198	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	85849833	85856449	85849833	ID=Msa1132960;Name=Msa1132960
chr7_3	mRNA	85849833	85856449	85849833	ID=Msa1132960-mRNA-1;Parent=Msa1132960;Name=Msa1132960-mRNA-1;_AED=0.07;_eAED=0.07;_QI=328\|1\|1\|1\|1\|0.90\|11\|924\|676
chr7_3	exon	85849833	85850389	85849833	ID=Msa1132960-mRNA-1:exon:25774;Parent=Msa1132960-mRNA-1
chr7_3	exon	85851787	85851905	85851787	ID=Msa1132960-mRNA-1:exon:25775;Parent=Msa1132960-mRNA-1
chr7_3	exon	85851989	85852095	85851989	ID=Msa1132960-mRNA-1:exon:25776;Parent=Msa1132960-mRNA-1
chr7_3	exon	85852180	85852267	85852180	ID=Msa1132960-mRNA-1:exon:25777;Parent=Msa1132960-mRNA-1
chr7_3	exon	85852954	85854052	85852954	ID=Msa1132960-mRNA-1:exon:25778;Parent=Msa1132960-mRNA-1
chr7_3	exon	85854169	85854223	85854169	ID=Msa1132960-mRNA-1:exon:25779;Parent=Msa1132960-mRNA-1
chr7_3	exon	85854345	85854426	85854345	ID=Msa1132960-mRNA-1:exon:25780;Parent=Msa1132960-mRNA-1
chr7_3	exon	85854589	85854669	85854589	ID=Msa1132960-mRNA-1:exon:25781;Parent=Msa1132960-mRNA-1
chr7_3	exon	85854993	85855100	85854993	ID=Msa1132960-mRNA-1:exon:25782;Parent=Msa1132960-mRNA-1
chr7_3	exon	85855188	85855620	85855188	ID=Msa1132960-mRNA-1:exon:25783;Parent=Msa1132960-mRNA-1
chr7_3	exon	85855896	85856449	85855896	ID=Msa1132960-mRNA-1:exon:25784;Parent=Msa1132960-mRNA-1
chr7_3	five_prime_UTR	85849833	85850160	85849833	ID=Msa1132960-mRNA-1:five_prime_utr;Parent=Msa1132960-mRNA-1
chr7_3	CDS	85850161	85850389	85850161	ID=Msa1132960-mRNA-1:cds;Parent=Msa1132960-mRNA-1
chr7_3	CDS	85851787	85851905	85851787	ID=Msa1132960-mRNA-1:cds;Parent=Msa1132960-mRNA-1
chr7_3	CDS	85851989	85852095	85851989	ID=Msa1132960-mRNA-1:cds;Parent=Msa1132960-mRNA-1
chr7_3	CDS	85852180	85852267	85852180	ID=Msa1132960-mRNA-1:cds;Parent=Msa1132960-mRNA-1
chr7_3	CDS	85852954	85854052	85852954	ID=Msa1132960-mRNA-1:cds;Parent=Msa1132960-mRNA-1
chr7_3	CDS	85854169	85854223	85854169	ID=Msa1132960-mRNA-1:cds;Parent=Msa1132960-mRNA-1
chr7_3	CDS	85854345	85854426	85854345	ID=Msa1132960-mRNA-1:cds;Parent=Msa1132960-mRNA-1
chr7_3	CDS	85854589	85854669	85854589	ID=Msa1132960-mRNA-1:cds;Parent=Msa1132960-mRNA-1
chr7_3	CDS	85854993	85855100	85854993	ID=Msa1132960-mRNA-1:cds;Parent=Msa1132960-mRNA-1
chr7_3	CDS	85855188	85855250	85855188	ID=Msa1132960-mRNA-1:cds;Parent=Msa1132960-mRNA-1
chr7_3	three_prime_UTR	85855251	85855620	85855251	ID=Msa1132960-mRNA-1:three_prime_utr;Parent=Msa1132960-mRNA-1
chr7_3	three_prime_UTR	85855896	85856449	85855896	ID=Msa1132960-mRNA-1:three_prime_utr;Parent=Msa1132960-mRNA-1

Gene Sequence

>Msa1132960

ATGGACATGGCGGCATCATCATCTTCATCTTCTCCAACGAACGAACCTCCTCCTCCTCCTCAAGATCAACATCACGATCTTCAACATCAACTTCAACAAGAACAACAACAGCAATCTTCACCAATCATCAAAGACTTTCTTCACAAAACCAAAATCATTCAGTTTCTTGGTCGCACCACTCCGATCGTCCTTCAAAACGATAATGGACCTTGTCCTCTCCTCGCTATCTGTAACGTTCTTCTGCTACGAAACCAGTTAGGTTTGAGCTCAGATATTGGTGAAGTCTCACAGGAGAAGTTGCTTTCATTGGTTGCTGAGCGATTGCTTGATTCAAATAGTAATGTGAATAACAAAGATGCAGGCTATGTTGAAAATCAACAACAGAACATTGCCGATGCAATTGATTTGCTCCCTAGGCTTGCCACTGGAATTGATGTAAATCTAAAATTTACGAGAATAGATGATTTTGAATTCACTCCAGAGTGTGCCATATTTGATTTGCTGGACATTCCTTTGTATCATGGCTGGATAGTTGATCAGCAGGATCATGATACTGCAACTGCAATTGGATCGAAGTCCTATAATGCCCTTATGGGAGAGCTTGTTTCTCTTGAAACACGGAACATTGAAACTCTACCAAAAAATAATCCGGAAGAAGAAGATTGTGTTGATTTTGTTGCTGCAACAACTGCTGCTCTTGGAGTGCCTTCTCCCAGTCTTTCTAAAACCAGGTCTTTTGATGATTCTCCGCGTTCTGTTTCTGATCAGGCACCAAGAAAAGGTGATCTTGAAGAAGAAGAAGAGCTGTTGAGAGCCTTGAAGATGTCTGAAGTTGATTCTGTAGCTTTAATTAGTGATCCCATTGCAGGACATGCAAATGGTAATGGGGGAGAAGTTTCTTTTGGTATGGACAAAAATATGTGTGACAAACAGGCTGTATCCGTCGATTCTGGGGTTGACTTGGGAAAGAACACTGGTAAAGAAAGCAGTGACTTTCATGAATCAGAAACCTTCATACCTGATGATTCCACTGCTTCTAGTAAAGACTATAATGAACATACATCTTCTACATCTACATTGGGGGAAGCAGCTAATCCGTTCTTTAAGAATGATGCTGTAAGTGGCTTCCATCAATCAGCTTCTATGGAACCTGAAGAATCTACTGAACAAAACGATGTGGTTGAGAAGCATAAACTTGATGCATTAGTTCAGAATAAGAGTGCAGCCATCCATTCTCCTGAAAAATATTGTGTTTCTGTTTTTGAGAGCTGTGCAGATGGCACTATGGGGGGTGAAAAAGTTCACAATCAATCCTCCCTTACATCTATAGATCATGAAACTTCAGATGAATCTCAAGGACTTGATGCAACAGGAGTGCCATGCTTATCTGCAAGCCATACAGATTCGGATTCTTCTGGTATCAGATTTCATCAAACTGATGCTTCAGGAACATTTCCTTCAACCGTTGATGGGAGTGAGCCCATGTATGAAGGAGAGGAATGTGTGTTGGATACAAAAACTGGAAATTTTGAGAATCGTGAACCTGTTTATGAAGGGGAGGCGGTGCTTCAGGAACAGGCCGACAAAAGCACCTTAGATGCCCTTGATCCAAGGGCTAAGGAAGAAATTACTCCAGAACAAGGAGAACTGGTAAAGAGTTTTTTGAAGAATAATGCCAGTCAGTTGACATTTTACGGGCTTTTCTGTCTTCAAGATGGTCTTAAAGAGCGTGAGTTATGTGTTTTTTTCCGAAACAATCATTTCAGCACCATGTTTAAGTTTGAGGGTGAGCTCTATCTTCTAGCTACAGACCAAGGCTACATAAATCAGCCTGATCTGGTTTGGGAAAAACTGAATGAGGTCAACGGTGATACATTGTTTATGACTGGTAATTTCAAGGAATTCAAGGTAGAAAGCCATGAAAATAACACCACCTGGGATGAGAATAATGTTATGACCAACACTGCTGACTATCTTGCCAGCATAGAGAGTGCAACGCATGCAGGCTTAGATGTCAAGTTGAGTTTCTGA

Protein sequence

>Msa1132960

MDMAASSSSSSPTNEPPPPPQDQHHDLQHQLQQEQQQQSSPIIKDFLHKTKIIQFLGRTTPIVLQNDNGPCPLLAICNVLLLRNQLGLSSDIGEVSQEKLLSLVAERLLDSNSNVNNKDAGYVENQQQNIADAIDLLPRLATGIDVNLKFTRIDDFEFTPECAIFDLLDIPLYHGWIVDQQDHDTATAIGSKSYNALMGELVSLETRNIETLPKNNPEEEDCVDFVAATTAALGVPSPSLSKTRSFDDSPRSVSDQAPRKGDLEEEEELLRALKMSEVDSVALISDPIAGHANGNGGEVSFGMDKNMCDKQAVSVDSGVDLGKNTGKESSDFHESETFIPDDSTASSKDYNEHTSSTSTLGEAANPFFKNDAVSGFHQSASMEPEESTEQNDVVEKHKLDALVQNKSAAIHSPEKYCVSVFESCADGTMGGEKVHNQSSLTSIDHETSDESQGLDATGVPCLSASHTDSDSSGIRFHQTDASGTFPSTVDGSEPMYEGEECVLDTKTGNFENREPVYEGEAVLQEQADKSTLDALDPRAKEEITPEQGELVKSFLKNNASQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKFEGELYLLATDQGYINQPDLVWEKLNEVNGDTLFMTGNFKEFKVESHENNTTWDENNVMTNTADYLASIESATHAGLDVKLSF*