AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0807040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0807040 MtrunA17_Chr5g0398191 94.316 651 35 2 23 672 22 671 0.0 1224
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0807040 AT4G11860.1 72.112 251 68 2 28 277 18 267 1.16e-109 347
Msa0807040 AT4G22960.1 36.364 242 102 4 39 280 6 195 1.39e-35 141
Msa0807040 AT4G22960.1 41.304 138 74 1 514 651 333 463 6.69e-29 122

Find 212 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACCAGTTGCTGTAATTT+TGG 0.090062 5_3:+27798380 None:intergenic
TCATTTCAGCACCATGTTTA+AGG 0.142633 5_3:-27800010 Msa0807040:intron
ACCAAAATCATTCAGTTTCT+TGG 0.155115 5_3:-27804107 Msa0807040:CDS
ACCAAGAAACTGAATGATTT+TGG 0.168902 5_3:+27804106 None:intergenic
ATAAAAGGATTTGAACATTT+TGG 0.200919 5_3:-27798019 Msa0807040:three_prime_UTR
CAGGCTGTATCCGTCGATTC+TGG 0.202554 5_3:-27801074 Msa0807040:CDS
GCCGAAGCTCACAGAAATTT+TGG 0.205966 5_3:+27798238 None:intergenic
CTCTCCCATAAGGGCATTAT+AGG 0.239042 5_3:+27801427 None:intergenic
TACATCATCTATTCATCTTT+GGG 0.271420 5_3:+27804561 None:intergenic
TTACATCATCTATTCATCTT+TGG 0.274268 5_3:+27804560 None:intergenic
TGACAAAGAAGAGAAATTAA+AGG 0.286715 5_3:+27804294 None:intergenic
TATAGATAGATAACAAATAT+TGG 0.291865 5_3:-27804383 Msa0807040:five_prime_UTR
CTAGTTAGACGTTGACTAAC+AGG 0.300363 5_3:-27798073 Msa0807040:three_prime_UTR
TATCATTAAGGATGCTTATC+AGG 0.301168 5_3:+27799101 None:intergenic
TGAAGGGGAGGCGGTGCTTC+AGG 0.309136 5_3:-27800454 Msa0807040:CDS
TCAACACAATCTTCTTCTTC+CGG 0.316694 5_3:+27801356 None:intergenic
AATGAAAGGTGTGGCCAATT+AGG 0.338348 5_3:+27804349 None:intergenic
CCTTGGATCAAGGGCATCTA+AGG 0.343339 5_3:+27800413 None:intergenic
CTGGACATTCCTTTGTATCA+TGG 0.345688 5_3:-27802189 Msa0807040:CDS
CTTCCATCAATCAGCTTCTA+TGG 0.345760 5_3:-27800880 Msa0807040:CDS
GAAGTCCTATAATGCCCTTA+TGG 0.346813 5_3:-27801432 Msa0807040:CDS
CATACAGATTCGGATTCTTC+TGG 0.351461 5_3:-27800609 Msa0807040:CDS
GTGTGCCATATTTGATTTGC+TGG 0.351486 5_3:-27802208 Msa0807040:CDS
TCAAGTTTCTTTGTAAATAT+AGG 0.353111 5_3:-27798361 Msa0807040:three_prime_UTR
TAAATCAGCCTGATCTGGTT+TGG 0.362632 5_3:-27799783 Msa0807040:CDS
TAGTTTGTAGTTTAAATGTT+TGG 0.368390 5_3:+27799021 None:intergenic
TCGGCCCGTTCTGTGTTGAT+TGG 0.369450 5_3:-27798220 Msa0807040:three_prime_UTR
TCCGCGTTCTGTTTCTGATC+AGG 0.373342 5_3:-27801258 Msa0807040:CDS
CATGATACTGCAACTGCAAT+TGG 0.373408 5_3:-27801458 Msa0807040:CDS
GGAGGCGGTGCTTCAGGAAC+AGG 0.376020 5_3:-27800448 Msa0807040:CDS
CGTCGATTCTGGGGTTGACT+TGG 0.376917 5_3:-27801063 Msa0807040:CDS
CAGGACATGCAAATGGTAAT+GGG 0.378085 5_3:-27801139 Msa0807040:CDS
CAAGCGCACTGATATCATTA+AGG 0.378224 5_3:+27799089 None:intergenic
GACAAAGAAGAGAAATTAAA+GGG 0.378328 5_3:+27804295 None:intergenic
ACCAAAATTTCTGTGAGCTT+CGG 0.380582 5_3:-27798239 Msa0807040:three_prime_UTR
TTTCATCAAACTGATGCTTC+AGG 0.384765 5_3:-27800579 Msa0807040:CDS
AAGTCCTATAATGCCCTTAT+GGG 0.386156 5_3:-27801431 Msa0807040:CDS
TTAATTAGTGATCCCATTGC+AGG 0.387097 5_3:-27801158 Msa0807040:CDS
TATCCCAAAATTACAGCAAC+TGG 0.387174 5_3:-27798384 Msa0807040:three_prime_UTR
GTTGACTTTAACTTCAGTTA+TGG 0.387898 5_3:-27798990 Msa0807040:three_prime_UTR
ACAGGAGAAGTTGCTTTCAT+TGG 0.390098 5_3:-27802570 Msa0807040:CDS
TAGCACCACTGACCTTGTTC+TGG 0.392458 5_3:+27800372 None:intergenic
TTGTCTTTAGATTTCGCATC+AGG 0.393702 5_3:+27798477 None:intergenic
GTAATTTCTTCCTTAGCCCT+TGG 0.397455 5_3:+27800396 None:intergenic
CTTCCTTAGCCCTTGGATCA+AGG 0.398764 5_3:+27800403 None:intergenic
GAGAAACAAGCTCTCCCATA+AGG 0.403032 5_3:+27801417 None:intergenic
GGATTCCTTCCTGTGCTCCT+TGG 0.406279 5_3:+27798516 None:intergenic
TTAGGTTTGAGCTCAGATAT+TGG 0.406340 5_3:-27802602 Msa0807040:CDS
CCCTTCTATTCACAGTTTGA+GGG 0.407165 5_3:-27799841 Msa0807040:intron
AGGCTGTATCCGTCGATTCT+GGG 0.407335 5_3:-27801073 Msa0807040:CDS
GAGCTGTGCAGATGGCACTA+TGG 0.407733 5_3:-27800739 Msa0807040:CDS
CTTCTGCTACGAAACCAGTT+AGG 0.412210 5_3:-27802620 Msa0807040:CDS
AATGTCCAGCAAATCAAATA+TGG 0.413781 5_3:+27802203 None:intergenic
AGCTGTGCAGATGGCACTAT+GGG 0.415753 5_3:-27800738 Msa0807040:CDS
ACATCTTCTACATCTACATT+GGG 0.415962 5_3:-27800945 Msa0807040:CDS
TTTAGATTTCGCATCAGGCT+TGG 0.418673 5_3:+27798482 None:intergenic
ACCGCCTCCCCTTCATAAAC+AGG 0.421149 5_3:+27800462 None:intergenic
TATCTGAGCTCAAACCTAAC+TGG 0.421498 5_3:+27802606 None:intergenic
TTAGATTTCGCATCAGGCTT+GGG 0.423326 5_3:+27798483 None:intergenic
AAATTATCAAAGTGTAGGGC+TGG 0.426459 5_3:+27798170 None:intergenic
AAATCAGCCTGATCTGGTTT+GGG 0.426513 5_3:-27799782 Msa0807040:CDS
ATCTGCAAGCCATACAGATT+CGG 0.431647 5_3:-27800619 Msa0807040:CDS
TTCCTTAGCCCTTGGATCAA+GGG 0.434399 5_3:+27800404 None:intergenic
TGAAGAAAGTCTTTGATGAT+TGG 0.435183 5_3:+27804134 None:intergenic
GTTTATGACTGGTAATTTCA+AGG 0.435309 5_3:-27799405 Msa0807040:CDS
GCTGCAACAACTGCTGCTCT+TGG 0.442455 5_3:-27801326 Msa0807040:CDS
GGAGGAGGAGGTTCGTTCGT+TGG 0.443283 5_3:+27804221 None:intergenic
TTTCATGATCTATAGATGTA+AGG 0.443480 5_3:+27800688 None:intergenic
GGTTGAAATTTGAGAGGTAA+AGG 0.445210 5_3:+27798259 None:intergenic
CTACATAAATCAGCCTGATC+TGG 0.445409 5_3:-27799788 Msa0807040:CDS
ATCAACTTCAGACATCTTCA+AGG 0.446591 5_3:+27801190 None:intergenic
GCAGGACATGCAAATGGTAA+TGG 0.448164 5_3:-27801140 Msa0807040:CDS
ACATTCCTCTCCTTCATACA+TGG 0.451244 5_3:+27800524 None:intergenic
ATCGTCCTTCAAAACGATAA+TGG 0.452482 5_3:-27804071 Msa0807040:CDS
TTTAAGAATGATGCTGTAAG+TGG 0.456550 5_3:-27800903 Msa0807040:CDS
ACATTTCCTTCAACCGTTGA+TGG 0.456915 5_3:-27800555 Msa0807040:CDS
GTTCCATAGAAGCTGATTGA+TGG 0.459091 5_3:+27800877 None:intergenic
ACATTCCTTTGTATCATGGC+TGG 0.464219 5_3:-27802185 Msa0807040:CDS
CCATTTGCATGTCCTGCAAT+GGG 0.466921 5_3:+27801146 None:intergenic
AGGTGTGGCCAATTAGGAAA+TGG 0.467117 5_3:+27804355 None:intergenic
CAACAAACACCATCTGTTAG+TGG 0.467432 5_3:-27798845 Msa0807040:three_prime_UTR
CAGGCTGATTTATGTAGCCT+TGG 0.469871 5_3:+27799794 None:intergenic
CATTTCCTTCAACCGTTGAT+GGG 0.476133 5_3:-27800554 Msa0807040:CDS
TGGTAATTTCAAGGAATTCA+AGG 0.476217 5_3:-27799396 Msa0807040:CDS
CTTAATGATATCAGTGCGCT+TGG 0.476354 5_3:-27799088 Msa0807040:three_prime_UTR
GCATCAGGCTTGGGAGATGA+AGG 0.486972 5_3:+27798492 None:intergenic
CAGAAGAATCCGAATCTGTA+TGG 0.487282 5_3:+27800610 None:intergenic
TCACTCCCATCAACGGTTGA+AGG 0.487379 5_3:+27800549 None:intergenic
ATGCAATTGATTTGCTCCCT+AGG 0.487788 5_3:-27802380 Msa0807040:CDS
ACCATTTGCATGTCCTGCAA+TGG 0.488204 5_3:+27801145 None:intergenic
CTCCCAGTCTTTCTAAAACC+AGG 0.488244 5_3:-27801295 Msa0807040:CDS
TCTCAAGGACTTGATGCAAC+AGG 0.488327 5_3:-27800654 Msa0807040:CDS
TGGTGCTGAAATGATTGTTT+CGG 0.489544 5_3:+27800019 None:intergenic
ACAGCCAATCAACACAGAAC+GGG 0.491132 5_3:+27798216 None:intergenic
TACATCTTCTACATCTACAT+TGG 0.492761 5_3:-27800946 Msa0807040:CDS
CTAGAAGCAGTGGAATCATC+AGG 0.501078 5_3:+27800987 None:intergenic
GTAAGTAGTATCAATTGTTA+CGG 0.501570 5_3:+27804419 None:intergenic
TCTGATCAGGCACCAAGAAA+AGG 0.504311 5_3:-27801245 Msa0807040:CDS
GTCGATTCTGGGGTTGACTT+GGG 0.507700 5_3:-27801062 Msa0807040:CDS
GGTGATACATTGTTTATGAC+TGG 0.508580 5_3:-27799416 Msa0807040:CDS
CCCATTGCAGGACATGCAAA+TGG 0.508903 5_3:-27801146 Msa0807040:CDS
TGATCTTGAGGAGGAGGAGG+AGG 0.509333 5_3:+27804209 None:intergenic
ACTAAAATTATCAAAGTGTA+GGG 0.509350 5_3:+27798166 None:intergenic
CTTCAACTTCATCTGTGGTG+TGG 0.509488 5_3:+27804537 None:intergenic
TGTTGATCTTGAGGAGGAGG+AGG 0.509944 5_3:+27804206 None:intergenic
CTCAAACTCTTGTTGTTGCA+AGG 0.510580 5_3:+27798889 None:intergenic
TATTTCTTCAACTTCATCTG+TGG 0.513579 5_3:+27804532 None:intergenic
TCAATTCCAGTGGCAAGCCT+AGG 0.516534 5_3:+27802363 None:intergenic
TGGCTGGATAGTTGATCAGC+AGG 0.518208 5_3:-27802169 Msa0807040:intron
TTGCTCCCTAGGCTTGCCAC+TGG 0.521610 5_3:-27802369 Msa0807040:CDS
CAAACAAAATATCAAGTGTA+GGG 0.523223 5_3:+27798283 None:intergenic
AGAAACAAGCTCTCCCATAA+GGG 0.523662 5_3:+27801418 None:intergenic
CCTTAGATGCCCTTGATCCA+AGG 0.525313 5_3:-27800413 Msa0807040:CDS
AATCGTGAACCTGTTTATGA+AGG 0.525418 5_3:-27800471 Msa0807040:CDS
ATGCGTTGCACTCTCTATGC+TGG 0.525607 5_3:+27799217 None:intergenic
TTGACTAACAGGGCAGGAAG+TGG 0.527494 5_3:-27798062 Msa0807040:three_prime_UTR
CCAAACAAAATATCAAGTGT+AGG 0.528933 5_3:+27798282 None:intergenic
AATTATCAAAGTGTAGGGCT+GGG 0.530468 5_3:+27798171 None:intergenic
TGAAGGAGAGGAATGTGTGT+TGG 0.531144 5_3:-27800517 Msa0807040:CDS
TTGCAGGTGCCAAGGAGCAC+AGG 0.534470 5_3:-27798525 Msa0807040:intron
GTTATTAGAAATGAAATGAA+AGG 0.536270 5_3:+27804335 None:intergenic
AAATAGTGTACCACAGTGGC+AGG 0.536901 5_3:-27798334 Msa0807040:three_prime_UTR
CAGACTGGTCACAGGTCCCC+AGG 0.537459 5_3:-27798816 Msa0807040:intron
AGTGGAATCATCAGGTATGA+AGG 0.539824 5_3:+27800995 None:intergenic
TGATGTTGATCTTGAGGAGG+AGG 0.541054 5_3:+27804203 None:intergenic
TGCCCTTGATCCAAGGGCTA+AGG 0.542288 5_3:-27800406 Msa0807040:CDS
ATCGTGAACCTGTTTATGAA+GGG 0.542826 5_3:-27800470 Msa0807040:CDS
ATAGAGAGTGCAACGCATGC+AGG 0.545017 5_3:-27799212 Msa0807040:CDS
GGCTTACAGAACAAAGATGC+AGG 0.545976 5_3:-27802435 Msa0807040:intron
TAGTATCAATTGTTACGGAA+TGG 0.547592 5_3:+27804424 None:intergenic
CAGATAGCGAGGAGAGGACA+AGG 0.549609 5_3:+27804047 None:intergenic
TTCATGATCTATAGATGTAA+GGG 0.554085 5_3:+27800689 None:intergenic
AACTAAAATTATCAAAGTGT+AGG 0.556093 5_3:+27798165 None:intergenic
GAAAATACGTACAGCAGTGT+TGG 0.556829 5_3:+27799325 None:intergenic
CATAACATTATTCTCATCCC+AGG 0.557109 5_3:+27799349 None:intergenic
CTTAGATGCCCTTGATCCAA+GGG 0.560698 5_3:-27800412 Msa0807040:CDS
GCCATGAAAATAACACCACC+TGG 0.563001 5_3:-27799367 Msa0807040:CDS
ACAGCATCATTCTTAAAGAA+CGG 0.564978 5_3:+27800909 None:intergenic
CACAGCCAATCAACACAGAA+CGG 0.565012 5_3:+27798215 None:intergenic
TTGAAGAAATAATAATGAGA+GGG 0.565853 5_3:-27804520 Msa0807040:five_prime_UTR
GGCTGTATCCGTCGATTCTG+GGG 0.566892 5_3:-27801072 Msa0807040:CDS
TATCAAGTGTAGGGAAGTAG+AGG 0.566991 5_3:+27798292 None:intergenic
CCCGTAAAATGTCAACTGAC+TGG 0.567190 5_3:+27800213 None:intergenic
CGTGCTCATCACCATGGACA+TGG 0.568932 5_3:-27804267 Msa0807040:exon
AGATATTGGTGAAGTCTCAC+AGG 0.573083 5_3:-27802588 Msa0807040:CDS
AGCTTGTTTCTCTTGAAACA+CGG 0.578655 5_3:-27801406 Msa0807040:CDS
ATAGTCTTTACTAGAAGCAG+TGG 0.579508 5_3:+27800977 None:intergenic
CGGAGAATCATCAAAAGACC+TGG 0.582351 5_3:+27801277 None:intergenic
CAATTCCAGTGGCAAGCCTA+GGG 0.583869 5_3:+27802364 None:intergenic
AATGCTATTTGCAGGTGCCA+AGG 0.584271 5_3:-27798533 Msa0807040:intron
TGTTAGTGGTACTTCCAGAC+TGG 0.586591 5_3:-27798831 Msa0807040:three_prime_UTR
TGAAGAAATAATAATGAGAG+GGG 0.587039 5_3:-27804519 Msa0807040:five_prime_UTR
GAAACTTCAGATGAATCTCA+AGG 0.591179 5_3:-27800669 Msa0807040:CDS
CAAAGAAACTTCACCACACG+CGG 0.592484 5_3:-27804450 Msa0807040:five_prime_UTR
CAAGTCAACCCCAGAATCGA+CGG 0.594894 5_3:+27801064 None:intergenic
TAGATTTACATCAATTCCAG+TGG 0.596577 5_3:+27802353 None:intergenic
GGGAGTGAGCCCATGTATGA+AGG 0.598272 5_3:-27800534 Msa0807040:CDS
TGAGCCCATGTATGAAGGAG+AGG 0.599669 5_3:-27800529 Msa0807040:CDS
AAATCAAATATGGCACACTC+TGG 0.599733 5_3:+27802213 None:intergenic
ACTATCCAGCCATGATACAA+AGG 0.600114 5_3:+27802180 None:intergenic
ACCTGTTTATGAAGGGGAGG+CGG 0.600986 5_3:-27800463 Msa0807040:CDS
TAGACGTTGACTAACAGGGC+AGG 0.601304 5_3:-27798068 Msa0807040:three_prime_UTR
GTTGAAGAAATAATAATGAG+AGG 0.604558 5_3:-27804521 Msa0807040:five_prime_UTR
TGATGATGCCGCCATGTCCA+TGG 0.605923 5_3:+27804256 None:intergenic
GTACTCATCTTTCAGGTCAA+CGG 0.605959 5_3:-27799437 Msa0807040:intron
AGGGAGCAAATCAATTGCAT+CGG 0.613034 5_3:+27802383 None:intergenic
CTAACAGGGCAGGAAGTGGA+TGG 0.615772 5_3:-27798058 Msa0807040:three_prime_UTR
TAGTTAGACGTTGACTAACA+GGG 0.615852 5_3:-27798072 Msa0807040:three_prime_UTR
GGTACTTCCAGACTGGTCAC+AGG 0.619489 5_3:-27798824 Msa0807040:three_prime_UTR
TAGAAATGAAATGAAAGGTG+TGG 0.623754 5_3:+27804340 None:intergenic
CTGTGCAGATGGCACTATGG+GGG 0.624148 5_3:-27800736 Msa0807040:CDS
CATGGGCTCACTCCCATCAA+CGG 0.627182 5_3:+27800542 None:intergenic
TCAGGCTTGGGAGATGAAGG+TGG 0.628059 5_3:+27798495 None:intergenic
TCGTGAACCTGTTTATGAAG+GGG 0.628818 5_3:-27800469 Msa0807040:CDS
CATTCCTCTCCTTCATACAT+GGG 0.629597 5_3:+27800525 None:intergenic
AGAGGACTGTGGTCACAAGA+AGG 0.629973 5_3:+27798310 None:intergenic
CATCTTCTACATCTACATTG+GGG 0.630573 5_3:-27800944 Msa0807040:CDS
AGATCGTGATGTTGATCTTG+AGG 0.632376 5_3:+27804197 None:intergenic
GGAAACCCTAACAGATAGCG+AGG 0.633808 5_3:+27804036 None:intergenic
GTATGGCTTGCAGATAAGCA+TGG 0.634359 5_3:+27800627 None:intergenic
TGTGCAGATGGCACTATGGG+GGG 0.637135 5_3:-27800735 Msa0807040:CDS
GAAGAAATAATAATGAGAGG+GGG 0.637664 5_3:-27804518 Msa0807040:five_prime_UTR
CAAGAACGTGCTCATCACCA+TGG 0.638464 5_3:-27804273 Msa0807040:exon
ATGATCTATAGATGTAAGGG+AGG 0.638564 5_3:+27800692 None:intergenic
GGTGTTTGTTGATTCTGTCG+TGG 0.640190 5_3:+27798857 None:intergenic
CCCTAACAGATAGCGAGGAG+AGG 0.640372 5_3:+27804041 None:intergenic
TGTTATCTATCTATATAATG+CGG 0.641014 5_3:+27804391 None:intergenic
AGGACATGCAAATGGTAATG+GGG 0.643223 5_3:-27801138 Msa0807040:CDS
GTTGACTTGGGAAAGAACAC+TGG 0.643861 5_3:-27801050 Msa0807040:CDS
TGAACCTGTTTATGAAGGGG+AGG 0.645413 5_3:-27800466 Msa0807040:CDS
TGCATCTGAGTAGAGAGTAG+AGG 0.645710 5_3:-27804482 Msa0807040:five_prime_UTR
AGGTGCCAAGGAGCACAGGA+AGG 0.648608 5_3:-27798521 Msa0807040:three_prime_UTR
ATCTGAGTAGAGAGTAGAGG+CGG 0.651357 5_3:-27804479 Msa0807040:five_prime_UTR
GGACATGCAAATGGTAATGG+GGG 0.651612 5_3:-27801137 Msa0807040:CDS
GCTGTGCAGATGGCACTATG+GGG 0.655743 5_3:-27800737 Msa0807040:CDS
CTGGAAGTACCACTAACAGA+TGG 0.660411 5_3:+27798836 None:intergenic
TCGTGATGTTGATCTTGAGG+AGG 0.660990 5_3:+27804200 None:intergenic
TACGGAATGGAATCCGCGTG+TGG 0.663542 5_3:+27804437 None:intergenic
ATCTTCTACATCTACATTGG+GGG 0.663963 5_3:-27800943 Msa0807040:CDS
GTTTGTTGATTCTGTCGTGG+TGG 0.669815 5_3:+27798860 None:intergenic
GTTGGAGCTCACCTTAAACA+TGG 0.670794 5_3:+27799999 None:intergenic
ATGTAAATCTAAAATTTACG+AGG 0.672596 5_3:-27802341 Msa0807040:intron
GAAGAAATTACTCCAGAACA+AGG 0.675507 5_3:-27800384 Msa0807040:intron
ATCTACTGAACAAAACGATG+TGG 0.681022 5_3:-27800847 Msa0807040:CDS
TATCTTCTAGCTACAGACCA+AGG 0.683187 5_3:-27799811 Msa0807040:CDS
AACATTATTCTCATCCCAGG+TGG 0.684945 5_3:+27799352 None:intergenic
CCATGAAAATAACACCACCT+GGG 0.690099 5_3:-27799366 Msa0807040:CDS
GCTCATCACCATGGACATGG+CGG 0.711414 5_3:-27804264 Msa0807040:exon
ACAAGAAGGACCTGCCACTG+TGG 0.720582 5_3:+27798324 None:intergenic
TGTAGGGAAGTAGAGGACTG+TGG 0.722083 5_3:+27798299 None:intergenic
GCCTGATCAGAAACAGAACG+CGG 0.733300 5_3:+27801257 None:intergenic
AAGTAAATAGTGTACCACAG+TGG 0.788077 5_3:-27798338 Msa0807040:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATATAAAGCAAAAT+TGG + chr5_3:27799802-27799821 None:intergenic 10.0%
!!! TATTTTTCAATTTTTTTTGT+AGG - chr5_3:27799815-27799834 Msa0807040:CDS 10.0%
!!! TTAGATATTTACTTATTTTA+GGG + chr5_3:27803270-27803289 None:intergenic 10.0%
!!! ATTAGATATTTACTTATTTT+AGG + chr5_3:27803271-27803290 None:intergenic 10.0%
!! AATACAAAAACAAAAAATTA+AGG + chr5_3:27803793-27803812 None:intergenic 10.0%
!!! ATTTTATATATCATATGATT+TGG + chr5_3:27803945-27803964 None:intergenic 10.0%
!! TATAGATAGATAACAAATAT+TGG - chr5_3:27798183-27798202 Msa0807040:three_prime_UTR 15.0%
!! CTATAATTAATACTGTTATT+AGG - chr5_3:27798607-27798626 Msa0807040:intron 15.0%
!! TAAACTAATAATACAATCAT+AGG + chr5_3:27798734-27798753 None:intergenic 15.0%
!! CTAATGAAAATTTACAAATA+AGG + chr5_3:27799119-27799138 None:intergenic 15.0%
!! CGTATTAATATTAAAAGTTT+CGG + chr5_3:27799365-27799384 None:intergenic 15.0%
!!! ATTTTGTTATACTTTTTTTC+TGG - chr5_3:27799758-27799777 Msa0807040:intron 15.0%
!!! AAGATATCTTTGTTTTTTAT+TGG - chr5_3:27802291-27802310 Msa0807040:intron 15.0%
!! AATAAGTAAATATCTAATCT+TGG - chr5_3:27803273-27803292 Msa0807040:intron 15.0%
!! CATATGATATATAAAATCAT+TGG - chr5_3:27803948-27803967 Msa0807040:intron 15.0%
!!! ATTAAAATTTTCAGGATAAA+AGG - chr5_3:27804532-27804551 Msa0807040:five_prime_UTR 15.0%
!! TTGAAGAAATAATAATGAGA+GGG - chr5_3:27798046-27798065 Msa0807040:three_prime_UTR 20.0%
!! TGTTATCTATCTATATAATG+CGG + chr5_3:27798178-27798197 None:intergenic 20.0%
!! GTTATTAGAAATGAAATGAA+AGG + chr5_3:27798234-27798253 None:intergenic 20.0%
!! AGAAATTGAATAATGAAAGA+TGG + chr5_3:27798561-27798580 None:intergenic 20.0%
!! TTAATACTGTTATTAGGTTA+CGG - chr5_3:27798613-27798632 Msa0807040:intron 20.0%
!! ATTCAATTCAATTAGAGATA+AGG + chr5_3:27798783-27798802 None:intergenic 20.0%
!!! TTACATGGTGTTTATATTTT+TGG + chr5_3:27799623-27799642 None:intergenic 20.0%
!! ACAAATCATTAAAGATTACA+TGG + chr5_3:27799638-27799657 None:intergenic 20.0%
!!! TGTCTGACAATTTTTTTTAT+TGG - chr5_3:27800110-27800129 Msa0807040:intron 20.0%
!!! ATGTAAATCTAAAATTTACG+AGG - chr5_3:27800225-27800244 Msa0807040:CDS 20.0%
!! ATCTAATTAATTAGGATTGA+TGG + chr5_3:27800434-27800453 None:intergenic 20.0%
!! GATGATAGATCTAATTAATT+AGG + chr5_3:27800442-27800461 None:intergenic 20.0%
!!! TTTTACATACAGGATTTTTA+GGG + chr5_3:27800539-27800558 None:intergenic 20.0%
!!! ATTTTACATACAGGATTTTT+AGG + chr5_3:27800540-27800559 None:intergenic 20.0%
!!! ATTCATAATTTTCAACATAC+TGG + chr5_3:27800831-27800850 None:intergenic 20.0%
!! AATAATAAATAAACCCTTCA+TGG + chr5_3:27801036-27801055 None:intergenic 20.0%
!!! CTTTGTTTTTTATTGGTTTT+AGG - chr5_3:27802298-27802317 Msa0807040:intron 20.0%
!! GAAGAATAGTATATAAATCA+GGG + chr5_3:27802424-27802443 None:intergenic 20.0%
!! TGAAGAATAGTATATAAATC+AGG + chr5_3:27802425-27802444 None:intergenic 20.0%
!! ATTTATATACTATTCTTCAC+AGG - chr5_3:27802426-27802445 Msa0807040:CDS 20.0%
!! TTTAGTTGAATATTACACAA+AGG + chr5_3:27803086-27803105 None:intergenic 20.0%
!!! TGAATAACATTTTTTTCGTA+AGG + chr5_3:27803445-27803464 None:intergenic 20.0%
!!! TAGTTTGTAGTTTAAATGTT+TGG + chr5_3:27803548-27803567 None:intergenic 20.0%
!!! ATGGTTTTATCTATTCAAAA+TGG - chr5_3:27803595-27803614 Msa0807040:intron 20.0%
!!! TTAGTAACAATGAATCTTTT+CGG - chr5_3:27803619-27803638 Msa0807040:intron 20.0%
!!! TTAGAAGCTTGTTTTATAAT+TGG - chr5_3:27804144-27804163 Msa0807040:CDS 20.0%
!! TCAAGTTTCTTTGTAAATAT+AGG - chr5_3:27804205-27804224 Msa0807040:CDS 20.0%
!! ACTAAAATTATCAAAGTGTA+GGG + chr5_3:27804403-27804422 None:intergenic 20.0%
!! AACTAAAATTATCAAAGTGT+AGG + chr5_3:27804404-27804423 None:intergenic 20.0%
!!! TTTTTACATCAATATCACAA+AGG + chr5_3:27804439-27804458 None:intergenic 20.0%
!!! ATAAAAGGATTTGAACATTT+TGG - chr5_3:27804547-27804566 Msa0807040:five_prime_UTR 20.0%
! TACATCATCTATTCATCTTT+GGG + chr5_3:27798008-27798027 None:intergenic 25.0%
! TTACATCATCTATTCATCTT+TGG + chr5_3:27798009-27798028 None:intergenic 25.0%
! GTTGAAGAAATAATAATGAG+AGG - chr5_3:27798045-27798064 Msa0807040:three_prime_UTR 25.0%
! TGAAGAAATAATAATGAGAG+GGG - chr5_3:27798047-27798066 Msa0807040:three_prime_UTR 25.0%
! GTAAGTAGTATCAATTGTTA+CGG + chr5_3:27798150-27798169 None:intergenic 25.0%
! GACAAAGAAGAGAAATTAAA+GGG + chr5_3:27798274-27798293 None:intergenic 25.0%
! TGACAAAGAAGAGAAATTAA+AGG + chr5_3:27798275-27798294 None:intergenic 25.0%
! CATATTATTATACTCGTTAC+TGG - chr5_3:27798647-27798666 Msa0807040:intron 25.0%
! TTGTTACTCAATTCATTCTT+TGG - chr5_3:27798755-27798774 Msa0807040:intron 25.0%
! TTAAAAAAGAATGAAACTCG+CGG + chr5_3:27798820-27798839 None:intergenic 25.0%
!! GTTTTCTTGAAATGTATCTT+TGG - chr5_3:27798884-27798903 Msa0807040:three_prime_UTR 25.0%
! GGATTAAAAAAGAAAGAAAG+CGG + chr5_3:27799006-27799025 None:intergenic 25.0%
! GACATACAAAAGAAGATATT+AGG + chr5_3:27799027-27799046 None:intergenic 25.0%
! TTGAAAATGTACAACAAACA+TGG - chr5_3:27799091-27799110 Msa0807040:three_prime_UTR 25.0%
!! TTCATTAGATTTAGAGTATG+AGG - chr5_3:27799131-27799150 Msa0807040:three_prime_UTR 25.0%
!! TCATTAGATTTAGAGTATGA+GGG - chr5_3:27799132-27799151 Msa0807040:three_prime_UTR 25.0%
! ATGAACAGAATGATAAACTT+TGG + chr5_3:27799237-27799256 None:intergenic 25.0%
! TACTAAGAATTGTCAAATAG+TGG - chr5_3:27799462-27799481 Msa0807040:intron 25.0%
! AACTAGTCAGAAAAAATCAT+GGG + chr5_3:27799677-27799696 None:intergenic 25.0%
! TAACTAGTCAGAAAAAATCA+TGG + chr5_3:27799678-27799697 None:intergenic 25.0%
!!! TGCTCTAAAATTTTTCACTT+TGG - chr5_3:27799854-27799873 Msa0807040:intron 25.0%
!!! TCTAAAATTTTTCACTTTGG+AGG - chr5_3:27799857-27799876 Msa0807040:intron 25.0%
!! CTAAAATTTTTCACTTTGGA+GGG - chr5_3:27799858-27799877 Msa0807040:intron 25.0%
! AGTAATGTGAATGTAAGAAA+TGG - chr5_3:27800045-27800064 Msa0807040:CDS 25.0%
! GTAATGTGAATGTAAGAAAT+GGG - chr5_3:27800046-27800065 Msa0807040:CDS 25.0%
! CAGAACTTCAAAATTAATGA+TGG + chr5_3:27800287-27800306 None:intergenic 25.0%
! CTAATTCATATACGAAAACA+TGG + chr5_3:27800464-27800483 None:intergenic 25.0%
!!! TTGTATGTCATTTTACATAC+AGG + chr5_3:27800549-27800568 None:intergenic 25.0%
! TTCTTTATGTTTCGATCAAT+TGG - chr5_3:27800922-27800941 Msa0807040:CDS 25.0%
! TGATTATTCAAAAGATCACT+TGG + chr5_3:27800985-27801004 None:intergenic 25.0%
!! GGAAAACAAAGATAACATTT+TGG + chr5_3:27801008-27801027 None:intergenic 25.0%
! AACTCTACCAAAAAATAATC+CGG - chr5_3:27801191-27801210 Msa0807040:CDS 25.0%
!! ACAGAAACACAATATTTTTC+AGG + chr5_3:27801801-27801820 None:intergenic 25.0%
! TTCATGATCTATAGATGTAA+GGG + chr5_3:27801880-27801899 None:intergenic 25.0%
! TTTCATGATCTATAGATGTA+AGG + chr5_3:27801881-27801900 None:intergenic 25.0%
!!! TAAACCTTCAATGTTTTTGT+AGG - chr5_3:27802474-27802493 Msa0807040:intron 25.0%
! AAATGATGAAAATGAGATGT+TGG + chr5_3:27802588-27802607 None:intergenic 25.0%
!! AACATCTCATTTTCATCATT+TGG - chr5_3:27802587-27802606 Msa0807040:CDS 25.0%
!! TATTTTTCCCAACGATAAAA+AGG + chr5_3:27802655-27802674 None:intergenic 25.0%
! TGACATAAGTTAAAAAAGTC+TGG + chr5_3:27802846-27802865 None:intergenic 25.0%
! AAATTTAAACTTTGCATGCT+TGG - chr5_3:27802959-27802978 Msa0807040:intron 25.0%
!!! ATGTTTGGACTTCTTTTTTA+CGG + chr5_3:27803533-27803552 None:intergenic 25.0%
!! TTGCAAAACAATTTTTACCT+GGG + chr5_3:27803770-27803789 None:intergenic 25.0%
! TTAGTGAGATCTTTATGATT+AGG - chr5_3:27803910-27803929 Msa0807040:intron 25.0%
! TAAACTTCAAATATAACGAG+AGG + chr5_3:27803991-27804010 None:intergenic 25.0%
!!! ATTTTGGGATACAAAAGTTA+TGG + chr5_3:27804173-27804192 None:intergenic 25.0%
! CAAACAAAATATCAAGTGTA+GGG + chr5_3:27804286-27804305 None:intergenic 25.0%
!!! AATTTTGGTTGAAATTTGAG+AGG + chr5_3:27804316-27804335 None:intergenic 25.0%
!! TGGATGGTATTAAAATTTTC+AGG - chr5_3:27804524-27804543 Msa0807040:five_prime_UTR 25.0%
TATTTCTTCAACTTCATCTG+TGG + chr5_3:27798037-27798056 None:intergenic 30.0%
GAAGAAATAATAATGAGAGG+GGG - chr5_3:27798048-27798067 Msa0807040:three_prime_UTR 30.0%
TAGTATCAATTGTTACGGAA+TGG + chr5_3:27798145-27798164 None:intergenic 30.0%
! TGGATTTTCCATTTCCTAAT+TGG - chr5_3:27798203-27798222 Msa0807040:three_prime_UTR 30.0%
TAGAAATGAAATGAAAGGTG+TGG + chr5_3:27798229-27798248 None:intergenic 30.0%
! TGAAGAAAGTCTTTGATGAT+TGG + chr5_3:27798435-27798454 None:intergenic 30.0%
ACCAAAATCATTCAGTTTCT+TGG - chr5_3:27798459-27798478 Msa0807040:three_prime_UTR 30.0%
! ACCAAGAAACTGAATGATTT+TGG + chr5_3:27798463-27798482 None:intergenic 30.0%
TTGGAAATGTACAACAAACA+CGG - chr5_3:27798903-27798922 Msa0807040:three_prime_UTR 30.0%
ACAAAATAGCAACTAATGTG+TGG + chr5_3:27799054-27799073 None:intergenic 30.0%
TCATGTTTCTTGAACAGAAT+TGG - chr5_3:27799253-27799272 Msa0807040:intron 30.0%
TCGACTAATAAGTTCAAAAC+GGG + chr5_3:27799284-27799303 None:intergenic 30.0%
GTCGACTAATAAGTTCAAAA+CGG + chr5_3:27799285-27799304 None:intergenic 30.0%
AATGCTTATTGATGCATCTT+TGG + chr5_3:27799330-27799349 None:intergenic 30.0%
! AGATGCATCAATAAGCATTT+TGG - chr5_3:27799331-27799350 Msa0807040:intron 30.0%
! GATGCATCAATAAGCATTTT+GGG - chr5_3:27799332-27799351 Msa0807040:intron 30.0%
! ATGCATCAATAAGCATTTTG+GGG - chr5_3:27799333-27799352 Msa0807040:intron 30.0%
GATTGTCAACATTAGTACTA+AGG - chr5_3:27799542-27799561 Msa0807040:intron 30.0%
!!! TATTTTTGGAGTCATCTAGT+GGG + chr5_3:27799609-27799628 None:intergenic 30.0%
!!! ATATTTTTGGAGTCATCTAG+TGG + chr5_3:27799610-27799629 None:intergenic 30.0%
TGTTTATATTGCATTGTTGC+AGG - chr5_3:27799916-27799935 Msa0807040:intron 30.0%
! AGAAATGGGTTTGTAATCAT+TGG - chr5_3:27800060-27800079 Msa0807040:CDS 30.0%
TAGATTTACATCAATTCCAG+TGG + chr5_3:27800216-27800235 None:intergenic 30.0%
! AATCTAAAATTTACGAGGTC+AGG - chr5_3:27800230-27800249 Msa0807040:CDS 30.0%
! ATCTAAAATTTACGAGGTCA+GGG - chr5_3:27800231-27800250 Msa0807040:CDS 30.0%
AATGTCCAGCAAATCAAATA+TGG + chr5_3:27800366-27800385 None:intergenic 30.0%
ATTAGAACTTGTGGGAAAAT+TGG + chr5_3:27800513-27800532 None:intergenic 30.0%
! TTCAGTGAATTCCAGAATTT+TGG - chr5_3:27800613-27800632 Msa0807040:CDS 30.0%
AATTATGAATGACGTGTTAG+TGG - chr5_3:27800841-27800860 Msa0807040:CDS 30.0%
AAGGAGGCTAGATTAATTTA+CGG + chr5_3:27800883-27800902 None:intergenic 30.0%
AGAAATCACCAAAACCAATA+CGG + chr5_3:27800906-27800925 None:intergenic 30.0%
!! TTTCGATCAATTGGTTTGTA+AGG - chr5_3:27800931-27800950 Msa0807040:CDS 30.0%
!!! TCTTCTTCCGGATTATTTTT+TGG + chr5_3:27801201-27801220 None:intergenic 30.0%
CAAAAATATGTGTGACAAAC+AGG - chr5_3:27801473-27801492 Msa0807040:intron 30.0%
TACATCTTCTACATCTACAT+TGG - chr5_3:27801620-27801639 Msa0807040:intron 30.0%
ACATCTTCTACATCTACATT+GGG - chr5_3:27801621-27801640 Msa0807040:intron 30.0%
ACAGCATCATTCTTAAAGAA+CGG + chr5_3:27801660-27801679 None:intergenic 30.0%
TTTAAGAATGATGCTGTAAG+TGG - chr5_3:27801663-27801682 Msa0807040:intron 30.0%
! TTTTGTTCAGTAGATTCTTC+AGG + chr5_3:27801714-27801733 None:intergenic 30.0%
!!! ATATTTTTCAGGAGAATGGA+TGG + chr5_3:27801790-27801809 None:intergenic 30.0%
!!! CACAATATTTTTCAGGAGAA+TGG + chr5_3:27801794-27801813 None:intergenic 30.0%
!! GGAAATGGATTAGATATGTA+TGG - chr5_3:27802223-27802242 Msa0807040:CDS 30.0%
!!! TTTATTGGTTTTAGGAGAAC+TGG - chr5_3:27802306-27802325 Msa0807040:intron 30.0%
!! TTCAAGAAATTTTGACCAAC+AGG + chr5_3:27802395-27802414 None:intergenic 30.0%
AAAGCCTACAAAAACATTGA+AGG + chr5_3:27802481-27802500 None:intergenic 30.0%
AACGATAAAAAGGAGTTGTT+GGG + chr5_3:27802645-27802664 None:intergenic 30.0%
! AACAACTCCTTTTTATCGTT+GGG - chr5_3:27802645-27802664 Msa0807040:intron 30.0%
GAATAGAAGGGAATAGATTT+AGG + chr5_3:27802716-27802735 None:intergenic 30.0%
TTTCCTTTCTATGTTGAATC+TGG - chr5_3:27802889-27802908 Msa0807040:intron 30.0%
! TTTTGATGTACTCATCTTTC+AGG - chr5_3:27803122-27803141 Msa0807040:intron 30.0%
GTTTATGACTGGTAATTTCA+AGG - chr5_3:27803161-27803180 Msa0807040:intron 30.0%
TGGTAATTTCAAGGAATTCA+AGG - chr5_3:27803170-27803189 Msa0807040:intron 30.0%
! AAGTTAACTTGACATGTTTC+AGG - chr5_3:27803317-27803336 Msa0807040:intron 30.0%
TATCATTAAGGATGCTTATC+AGG + chr5_3:27803468-27803487 None:intergenic 30.0%
!!! TGTTTGGACTTCTTTTTTAC+GGG + chr5_3:27803532-27803551 None:intergenic 30.0%
! GTTGACTTTAACTTCAGTTA+TGG - chr5_3:27803576-27803595 Msa0807040:intron 30.0%
! TGCAAAACAATTTTTACCTG+GGG + chr5_3:27803769-27803788 None:intergenic 30.0%
! GTTGCAAAACAATTTTTACC+TGG + chr5_3:27803771-27803790 None:intergenic 30.0%
! GTTCATTATCTGCAATGTTT+TGG - chr5_3:27803821-27803840 Msa0807040:intron 30.0%
CTTTAAACATGATCTCTCTA+TGG + chr5_3:27803890-27803909 None:intergenic 30.0%
!!! GAAGCTTGTTTTATAATTGG+TGG - chr5_3:27804147-27804166 Msa0807040:CDS 30.0%
CCAAACAAAATATCAAGTGT+AGG + chr5_3:27804287-27804306 None:intergenic 30.0%
! CCTACACTTGATATTTTGTT+TGG - chr5_3:27804284-27804303 Msa0807040:five_prime_UTR 30.0%
TAAAAAGTCAGAGTGATGTA+TGG - chr5_3:27804453-27804472 Msa0807040:five_prime_UTR 30.0%
! AAGGATTTGAACATTTTGGA+AGG - chr5_3:27804551-27804570 Msa0807040:five_prime_UTR 30.0%
!!! TTATCGTTTTGAAGGACGAT+CGG + chr5_3:27798495-27798514 None:intergenic 35.0%
ATCGTCCTTCAAAACGATAA+TGG - chr5_3:27798495-27798514 Msa0807040:three_prime_UTR 35.0%
! AAGGTCCATTATCGTTTTGA+AGG + chr5_3:27798503-27798522 None:intergenic 35.0%
GAATAATGAAAGATGGAGAG+AGG + chr5_3:27798554-27798573 None:intergenic 35.0%
CAAAACTCGCAGAATTAAAC+TGG + chr5_3:27798973-27798992 None:intergenic 35.0%
GAAGTAGTGTTGTCAAATAG+CGG - chr5_3:27799384-27799403 Msa0807040:CDS 35.0%
TAGTACTAAATAGCGCATCA+TGG + chr5_3:27799447-27799466 None:intergenic 35.0%
AGTACTAATGTTGACAATCG+TGG + chr5_3:27799541-27799560 None:intergenic 35.0%
ATACCTCACTAGATACGAAA+AGG + chr5_3:27799708-27799727 None:intergenic 35.0%
TTAGGTTTGAGCTCAGATAT+TGG - chr5_3:27799964-27799983 Msa0807040:intron 35.0%
CTGCAATTGATACGTAACTT+TGG + chr5_3:27800311-27800330 None:intergenic 35.0%
AAATCAAATATGGCACACTC+TGG + chr5_3:27800356-27800375 None:intergenic 35.0%
AGGTTACTAGTCCAAAATTC+TGG + chr5_3:27800627-27800646 None:intergenic 35.0%
!!! ATTTTGGACTAGTAACCTCT+TGG - chr5_3:27800629-27800648 Msa0807040:CDS 35.0%
GCATGAAATGACTAAAAGAG+AGG + chr5_3:27800677-27800696 None:intergenic 35.0%
! GGTAGGATTTGATTTCAGAA+TGG - chr5_3:27800727-27800746 Msa0807040:CDS 35.0%
AGGAGGCTAGATTAATTTAC+GGG + chr5_3:27800882-27800901 None:intergenic 35.0%
! TTGTTTTCCTTCAACCATGA+AGG - chr5_3:27801019-27801038 Msa0807040:CDS 35.0%
! TGTTTTCCTTCAACCATGAA+GGG - chr5_3:27801020-27801039 Msa0807040:CDS 35.0%
AATAAACCCTTCATGGTTGA+AGG + chr5_3:27801029-27801048 None:intergenic 35.0%
AAGTCCTATAATGCCCTTAT+GGG - chr5_3:27801135-27801154 Msa0807040:CDS 35.0%
! AGCTTGTTTCTCTTGAAACA+CGG - chr5_3:27801160-27801179 Msa0807040:CDS 35.0%
TCAACACAATCTTCTTCTTC+CGG + chr5_3:27801213-27801232 None:intergenic 35.0%
! TCTTCAAGATCACCTTTTCT+TGG + chr5_3:27801336-27801355 None:intergenic 35.0%
ATCAACTTCAGACATCTTCA+AGG + chr5_3:27801379-27801398 None:intergenic 35.0%
TTAATTAGTGATCCCATTGC+AGG - chr5_3:27801408-27801427 Msa0807040:CDS 35.0%
ATAGTCTTTACTAGAAGCAG+TGG + chr5_3:27801592-27801611 None:intergenic 35.0%
CATCTTCTACATCTACATTG+GGG - chr5_3:27801622-27801641 Msa0807040:intron 35.0%
ATCTTCTACATCTACATTGG+GGG - chr5_3:27801623-27801642 Msa0807040:intron 35.0%
ATCTACTGAACAAAACGATG+TGG - chr5_3:27801719-27801738 Msa0807040:intron 35.0%
ATGATCTATAGATGTAAGGG+AGG + chr5_3:27801877-27801896 None:intergenic 35.0%
GAAACTTCAGATGAATCTCA+AGG - chr5_3:27801897-27801916 Msa0807040:intron 35.0%
TGTGTGTTGGATACAAAAAC+TGG - chr5_3:27802062-27802081 Msa0807040:intron 35.0%
AATCGTGAACCTGTTTATGA+AGG - chr5_3:27802095-27802114 Msa0807040:intron 35.0%
ATCGTGAACCTGTTTATGAA+GGG - chr5_3:27802096-27802115 Msa0807040:intron 35.0%
GAAGAAATTACTCCAGAACA+AGG - chr5_3:27802182-27802201 Msa0807040:CDS 35.0%
!! ATTTTGACCAACAGGACAAT+AGG + chr5_3:27802387-27802406 None:intergenic 35.0%
! TGGTGCTGAAATGATTGTTT+CGG + chr5_3:27802550-27802569 None:intergenic 35.0%
TCATTTCAGCACCATGTTTA+AGG - chr5_3:27802556-27802575 Msa0807040:CDS 35.0%
ACGATAAAAAGGAGTTGTTG+GGG + chr5_3:27802644-27802663 None:intergenic 35.0%
CAACGATAAAAAGGAGTTGT+TGG + chr5_3:27802646-27802665 None:intergenic 35.0%
! CAACAACTCCTTTTTATCGT+TGG - chr5_3:27802644-27802663 Msa0807040:intron 35.0%
GGTGATACATTGTTTATGAC+TGG - chr5_3:27803150-27803169 Msa0807040:intron 35.0%
CATAACATTATTCTCATCCC+AGG + chr5_3:27803220-27803239 None:intergenic 35.0%
! TCTCAGTAAATGCTATTTGC+AGG - chr5_3:27804025-27804044 Msa0807040:intron 35.0%
TTGTCTTTAGATTTCGCATC+AGG + chr5_3:27804092-27804111 None:intergenic 35.0%
TATCCCAAAATTACAGCAAC+TGG - chr5_3:27804182-27804201 Msa0807040:CDS 35.0%
! TGACCAGTTGCTGTAATTTT+GGG + chr5_3:27804188-27804207 None:intergenic 35.0%
! TTGACCAGTTGCTGTAATTT+TGG + chr5_3:27804189-27804208 None:intergenic 35.0%
AAGTAAATAGTGTACCACAG+TGG - chr5_3:27804228-27804247 Msa0807040:CDS 35.0%
GGTTGAAATTTGAGAGGTAA+AGG + chr5_3:27804310-27804329 None:intergenic 35.0%
ACCAAAATTTCTGTGAGCTT+CGG - chr5_3:27804327-27804346 Msa0807040:five_prime_UTR 35.0%
AATTATCAAAGTGTAGGGCT+GGG + chr5_3:27804398-27804417 None:intergenic 35.0%
AAATTATCAAAGTGTAGGGC+TGG + chr5_3:27804399-27804418 None:intergenic 35.0%
! TAGTTAGACGTTGACTAACA+GGG - chr5_3:27804494-27804513 Msa0807040:five_prime_UTR 35.0%
! AATGAAAGGTGTGGCCAATT+AGG + chr5_3:27798220-27798239 None:intergenic 40.0%
AGATCGTGATGTTGATCTTG+AGG + chr5_3:27798372-27798391 None:intergenic 40.0%
CAGTAACTAACGAGTAGCAT+TGG + chr5_3:27798845-27798864 None:intergenic 40.0%
TCGTGGATCGCAGAAAATAT+TGG + chr5_3:27799524-27799543 None:intergenic 40.0%
! TCTCCTTTTCGTATCTAGTG+AGG - chr5_3:27799702-27799721 Msa0807040:intron 40.0%
TATCTGAGCTCAAACCTAAC+TGG + chr5_3:27799963-27799982 None:intergenic 40.0%
AGATATTGGTGAAGTCTCAC+AGG - chr5_3:27799978-27799997 Msa0807040:intron 40.0%
! ACAGGAGAAGTTGCTTTCAT+TGG - chr5_3:27799996-27800015 Msa0807040:intron 40.0%
AGGGAGCAAATCAATTGCAT+CGG + chr5_3:27800186-27800205 None:intergenic 40.0%
!! ATGCAATTGATTTGCTCCCT+AGG - chr5_3:27800186-27800205 Msa0807040:intron 40.0%
!! GTGTGCCATATTTGATTTGC+TGG - chr5_3:27800358-27800377 Msa0807040:intron 40.0%
CTGGACATTCCTTTGTATCA+TGG - chr5_3:27800377-27800396 Msa0807040:intron 40.0%
ACATTCCTTTGTATCATGGC+TGG - chr5_3:27800381-27800400 Msa0807040:intron 40.0%
ACTATCCAGCCATGATACAA+AGG + chr5_3:27800389-27800408 None:intergenic 40.0%
ACTTGTGGGAAAATTGGCAA+GGG + chr5_3:27800507-27800526 None:intergenic 40.0%
AACTTGTGGGAAAATTGGCA+AGG + chr5_3:27800508-27800527 None:intergenic 40.0%
TAGGGCACATTAGAACTTGT+GGG + chr5_3:27800521-27800540 None:intergenic 40.0%
TTAGGGCACATTAGAACTTG+TGG + chr5_3:27800522-27800541 None:intergenic 40.0%
ACTAGTAACCTCTTGGTCAT+AGG - chr5_3:27800636-27800655 Msa0807040:CDS 40.0%
!! GCATCCATTTTGATGTTGCT+AGG - chr5_3:27800706-27800725 Msa0807040:CDS 40.0%
CCTACCTAGCAACATCAAAA+TGG + chr5_3:27800713-27800732 None:intergenic 40.0%
!! CCATTTTGATGTTGCTAGGT+AGG - chr5_3:27800710-27800729 Msa0807040:CDS 40.0%
TTTACGGGTATCACACAAAG+AGG + chr5_3:27800867-27800886 None:intergenic 40.0%
ATCACCAAAACCAATACGGA+AGG + chr5_3:27800902-27800921 None:intergenic 40.0%
CATGATACTGCAACTGCAAT+TGG - chr5_3:27801108-27801127 Msa0807040:CDS 40.0%
GAAGTCCTATAATGCCCTTA+TGG - chr5_3:27801134-27801153 Msa0807040:CDS 40.0%
AGAAACAAGCTCTCCCATAA+GGG + chr5_3:27801151-27801170 None:intergenic 40.0%
!!! GTTTTAGAAAGACTGGGAGA+AGG + chr5_3:27801270-27801289 None:intergenic 40.0%
!!! GACCTGGTTTTAGAAAGACT+GGG + chr5_3:27801276-27801295 None:intergenic 40.0%
!!! AGACCTGGTTTTAGAAAGAC+TGG + chr5_3:27801277-27801296 None:intergenic 40.0%
CAGGACATGCAAATGGTAAT+GGG - chr5_3:27801427-27801446 Msa0807040:CDS 40.0%
! AGGACATGCAAATGGTAATG+GGG - chr5_3:27801428-27801447 Msa0807040:CDS 40.0%
! AATGGGGGAGAAGTTTCTTT+TGG - chr5_3:27801444-27801463 Msa0807040:CDS 40.0%
! GGGAGAAGTTTCTTTTGGTA+TGG - chr5_3:27801449-27801468 Msa0807040:CDS 40.0%
AGTGGAATCATCAGGTATGA+AGG + chr5_3:27801574-27801593 None:intergenic 40.0%
CTTCCATCAATCAGCTTCTA+TGG - chr5_3:27801686-27801705 Msa0807040:intron 40.0%
GTTCCATAGAAGCTGATTGA+TGG + chr5_3:27801692-27801711 None:intergenic 40.0%
ATCTGCAAGCCATACAGATT+CGG - chr5_3:27801947-27801966 Msa0807040:intron 40.0%
CAGAAGAATCCGAATCTGTA+TGG + chr5_3:27801959-27801978 None:intergenic 40.0%
CATACAGATTCGGATTCTTC+TGG - chr5_3:27801957-27801976 Msa0807040:intron 40.0%
ACATTTCCTTCAACCGTTGA+TGG - chr5_3:27802011-27802030 Msa0807040:intron 40.0%
CATTTCCTTCAACCGTTGAT+GGG - chr5_3:27802012-27802031 Msa0807040:intron 40.0%
CATTCCTCTCCTTCATACAT+GGG + chr5_3:27802044-27802063 None:intergenic 40.0%
ACATTCCTCTCCTTCATACA+TGG + chr5_3:27802045-27802064 None:intergenic 40.0%
TCGTGAACCTGTTTATGAAG+GGG - chr5_3:27802097-27802116 Msa0807040:intron 40.0%
GTAATTTCTTCCTTAGCCCT+TGG + chr5_3:27802173-27802192 None:intergenic 40.0%
!! GTGGTGCTATATCTTGGAAA+TGG - chr5_3:27802208-27802227 Msa0807040:CDS 40.0%
! GCCAGTCAGTTGACATTTTA+CGG - chr5_3:27802352-27802371 Msa0807040:CDS 40.0%
! CCAGTCAGTTGACATTTTAC+GGG - chr5_3:27802353-27802372 Msa0807040:CDS 40.0%
ATGTTGACCTATTGTCCTGT+TGG - chr5_3:27802377-27802396 Msa0807040:CDS 40.0%
! AGGCTTTTCTGTCTTCAAGA+TGG - chr5_3:27802494-27802513 Msa0807040:intron 40.0%
CGATAAAAAGGAGTTGTTGG+GGG + chr5_3:27802643-27802662 None:intergenic 40.0%
TCCCTTCTATTCACAGTTTG+AGG - chr5_3:27802724-27802743 Msa0807040:intron 40.0%
CCCTCAAACTGTGAATAGAA+GGG + chr5_3:27802728-27802747 None:intergenic 40.0%
CCCTTCTATTCACAGTTTGA+GGG - chr5_3:27802725-27802744 Msa0807040:intron 40.0%
ACCCTCAAACTGTGAATAGA+AGG + chr5_3:27802729-27802748 None:intergenic 40.0%
! TATCTTCTAGCTACAGACCA+AGG - chr5_3:27802755-27802774 Msa0807040:intron 40.0%
CTACATAAATCAGCCTGATC+TGG - chr5_3:27802778-27802797 Msa0807040:intron 40.0%
TAAATCAGCCTGATCTGGTT+TGG - chr5_3:27802783-27802802 Msa0807040:intron 40.0%
! AAATCAGCCTGATCTGGTTT+GGG - chr5_3:27802784-27802803 Msa0807040:intron 40.0%
! AGTTTTTCCCAAACCAGATC+AGG + chr5_3:27802794-27802813 None:intergenic 40.0%
GGTTTGGGAAAAACTGAATG+AGG - chr5_3:27802799-27802818 Msa0807040:intron 40.0%
CCTTTCTATGTTGAATCTGG+CGG - chr5_3:27802892-27802911 Msa0807040:intron 40.0%
CTTTCTATGTTGAATCTGGC+GGG - chr5_3:27802893-27802912 Msa0807040:intron 40.0%
! GTACTCATCTTTCAGGTCAA+CGG - chr5_3:27803129-27803148 Msa0807040:intron 40.0%
CCATGAAAATAACACCACCT+GGG - chr5_3:27803200-27803219 Msa0807040:intron 40.0%
AACATTATTCTCATCCCAGG+TGG + chr5_3:27803217-27803236 None:intergenic 40.0%
GAAAATACGTACAGCAGTGT+TGG + chr5_3:27803244-27803263 None:intergenic 40.0%
! CAAGCGCACTGATATCATTA+AGG + chr5_3:27803480-27803499 None:intergenic 40.0%
CTTAATGATATCAGTGCGCT+TGG - chr5_3:27803478-27803497 Msa0807040:intron 40.0%
!! CTCAAACTCTTGTTGTTGCA+AGG + chr5_3:27803680-27803699 None:intergenic 40.0%
CAACAAACACCATCTGTTAG+TGG - chr5_3:27803721-27803740 Msa0807040:intron 40.0%
TATGCATCCCTGTTATCTGT+TGG - chr5_3:27803849-27803868 Msa0807040:intron 40.0%
TGAGAGACCAACAGATAACA+GGG + chr5_3:27803859-27803878 None:intergenic 40.0%
ATGAGAGACCAACAGATAAC+AGG + chr5_3:27803860-27803879 None:intergenic 40.0%
TTAGATTTCGCATCAGGCTT+GGG + chr5_3:27804086-27804105 None:intergenic 40.0%
TTTAGATTTCGCATCAGGCT+TGG + chr5_3:27804087-27804106 None:intergenic 40.0%
TATCAAGTGTAGGGAAGTAG+AGG + chr5_3:27804277-27804296 None:intergenic 40.0%
! CTAGTTAGACGTTGACTAAC+AGG - chr5_3:27804493-27804512 Msa0807040:five_prime_UTR 40.0%
CTTCAACTTCATCTGTGGTG+TGG + chr5_3:27798032-27798051 None:intergenic 45.0%
TGCATCTGAGTAGAGAGTAG+AGG - chr5_3:27798084-27798103 Msa0807040:three_prime_UTR 45.0%
ATCTGAGTAGAGAGTAGAGG+CGG - chr5_3:27798087-27798106 Msa0807040:three_prime_UTR 45.0%
CAAAGAAACTTCACCACACG+CGG - chr5_3:27798116-27798135 Msa0807040:three_prime_UTR 45.0%
AGGTGTGGCCAATTAGGAAA+TGG + chr5_3:27798214-27798233 None:intergenic 45.0%
TGATGTTGATCTTGAGGAGG+AGG + chr5_3:27798366-27798385 None:intergenic 45.0%
TCGTGATGTTGATCTTGAGG+AGG + chr5_3:27798369-27798388 None:intergenic 45.0%
AAATAGCGGCTATAGCGTAG+TGG - chr5_3:27799398-27799417 Msa0807040:CDS 45.0%
AGCGCATCATGGAATGATAG+AGG + chr5_3:27799436-27799455 None:intergenic 45.0%
TCTATAGCACTGTAGCGTAG+TGG - chr5_3:27799486-27799505 Msa0807040:intron 45.0%
TCATCTAGTGGGATAAGGCT+TGG + chr5_3:27799598-27799617 None:intergenic 45.0%
TGGAGTCATCTAGTGGGATA+AGG + chr5_3:27799603-27799622 None:intergenic 45.0%
CTTCTGCTACGAAACCAGTT+AGG - chr5_3:27799946-27799965 Msa0807040:intron 45.0%
GGCTTACAGAACAAAGATGC+AGG - chr5_3:27800131-27800150 Msa0807040:intron 45.0%
TCACTTTGCCTATGACCAAG+AGG + chr5_3:27800647-27800666 None:intergenic 45.0%
AATCTAGCCTCCTTCCGTAT+TGG - chr5_3:27800889-27800908 Msa0807040:CDS 45.0%
ACCAAAACCAATACGGAAGG+AGG + chr5_3:27800899-27800918 None:intergenic 45.0%
TCTTCATGTGCTTGTGAACC+AGG - chr5_3:27801083-27801102 Msa0807040:CDS 45.0%
CAGTTGCAGTATCATGATCC+TGG + chr5_3:27801104-27801123 None:intergenic 45.0%
!! CTCTCCCATAAGGGCATTAT+AGG + chr5_3:27801142-27801161 None:intergenic 45.0%
GAGAAACAAGCTCTCCCATA+AGG + chr5_3:27801152-27801171 None:intergenic 45.0%
!! CTCCCAGTCTTTCTAAAACC+AGG - chr5_3:27801271-27801290 Msa0807040:CDS 45.0%
CGGAGAATCATCAAAAGACC+TGG + chr5_3:27801292-27801311 None:intergenic 45.0%
TCTGATCAGGCACCAAGAAA+AGG - chr5_3:27801321-27801340 Msa0807040:CDS 45.0%
CCATTTGCATGTCCTGCAAT+GGG + chr5_3:27801423-27801442 None:intergenic 45.0%
ACCATTTGCATGTCCTGCAA+TGG + chr5_3:27801424-27801443 None:intergenic 45.0%
GCAGGACATGCAAATGGTAA+TGG - chr5_3:27801426-27801445 Msa0807040:CDS 45.0%
!! GGACATGCAAATGGTAATGG+GGG - chr5_3:27801429-27801448 Msa0807040:CDS 45.0%
!! GTTGACTTGGGAAAGAACAC+TGG - chr5_3:27801516-27801535 Msa0807040:intron 45.0%
CTAGAAGCAGTGGAATCATC+AGG + chr5_3:27801582-27801601 None:intergenic 45.0%
!! GTTTTTGAGAGCTGTGCAGA+TGG - chr5_3:27801819-27801838 Msa0807040:intron 45.0%
TCTCAAGGACTTGATGCAAC+AGG - chr5_3:27801912-27801931 Msa0807040:intron 45.0%
! GTATGGCTTGCAGATAAGCA+TGG + chr5_3:27801942-27801961 None:intergenic 45.0%
TGAAGGAGAGGAATGTGTGT+TGG - chr5_3:27802049-27802068 Msa0807040:intron 45.0%
TGAACCTGTTTATGAAGGGG+AGG - chr5_3:27802100-27802119 Msa0807040:intron 45.0%
!! GGCATCTAAGGTGCTTTTGT+CGG + chr5_3:27802144-27802163 None:intergenic 45.0%
CTTAGATGCCCTTGATCCAA+GGG - chr5_3:27802154-27802173 Msa0807040:intron 45.0%
TTCCTTAGCCCTTGGATCAA+GGG + chr5_3:27802165-27802184 None:intergenic 45.0%
TTACTCCAGAACAAGGTCAG+TGG - chr5_3:27802189-27802208 Msa0807040:CDS 45.0%
!! AGGTCAGTGGTGCTATATCT+TGG - chr5_3:27802202-27802221 Msa0807040:CDS 45.0%
CCCGTAAAATGTCAACTGAC+TGG + chr5_3:27802356-27802375 None:intergenic 45.0%
GTTGGAGCTCACCTTAAACA+TGG + chr5_3:27802570-27802589 None:intergenic 45.0%
! CAGGCTGATTTATGTAGCCT+TGG + chr5_3:27802775-27802794 None:intergenic 45.0%
CCGCCAGATTCAACATAGAA+AGG + chr5_3:27802895-27802914 None:intergenic 45.0%
! GCTTGGTGATTTGAGCTTCT+TGG - chr5_3:27802976-27802995 Msa0807040:intron 45.0%
GCCATGAAAATAACACCACC+TGG - chr5_3:27803199-27803218 Msa0807040:intron 45.0%
!!! CCCAGGTGGTGTTATTTTCA+TGG + chr5_3:27803203-27803222 None:intergenic 45.0%
!! GTTTGTTGATTCTGTCGTGG+TGG + chr5_3:27803709-27803728 None:intergenic 45.0%
!! GGTGTTTGTTGATTCTGTCG+TGG + chr5_3:27803712-27803731 None:intergenic 45.0%
!! CTGGAAGTACCACTAACAGA+TGG + chr5_3:27803733-27803752 None:intergenic 45.0%
TGTTAGTGGTACTTCCAGAC+TGG - chr5_3:27803735-27803754 Msa0807040:intron 45.0%
! AATGCTATTTGCAGGTGCCA+AGG - chr5_3:27804033-27804052 Msa0807040:intron 45.0%
AAATAGTGTACCACAGTGGC+AGG - chr5_3:27804232-27804251 Msa0807040:CDS 45.0%
! GCCGAAGCTCACAGAAATTT+TGG + chr5_3:27804331-27804350 None:intergenic 45.0%
ACAGCCAATCAACACAGAAC+GGG + chr5_3:27804353-27804372 None:intergenic 45.0%
CACAGCCAATCAACACAGAA+CGG + chr5_3:27804354-27804373 None:intergenic 45.0%
CAAGAACGTGCTCATCACCA+TGG - chr5_3:27798293-27798312 Msa0807040:three_prime_UTR 50.0%
TGTTGATCTTGAGGAGGAGG+AGG + chr5_3:27798363-27798382 None:intergenic 50.0%
!!! GTTTTGAAGGACGATCGGAG+TGG + chr5_3:27798490-27798509 None:intergenic 50.0%
TCCTCTCCTCGCTATCTGTT+AGG - chr5_3:27798524-27798543 Msa0807040:intron 50.0%
CCTCTCCTCGCTATCTGTTA+GGG - chr5_3:27798525-27798544 Msa0807040:intron 50.0%
GGAAACCCTAACAGATAGCG+AGG + chr5_3:27798533-27798552 None:intergenic 50.0%
! GCACTGTAGCGTAGTGGAAT+TGG - chr5_3:27799492-27799511 Msa0807040:intron 50.0%
CAATTCCAGTGGCAAGCCTA+GGG + chr5_3:27800205-27800224 None:intergenic 50.0%
TCAATTCCAGTGGCAAGCCT+AGG + chr5_3:27800206-27800225 None:intergenic 50.0%
TGGCTGGATAGTTGATCAGC+AGG - chr5_3:27800397-27800416 Msa0807040:CDS 50.0%
!!! GCCTCCTTCCGTATTGGTTT+TGG - chr5_3:27800895-27800914 Msa0807040:CDS 50.0%
!! TCCGCGTTCTGTTTCTGATC+AGG - chr5_3:27801308-27801327 Msa0807040:CDS 50.0%
GCCTGATCAGAAACAGAACG+CGG + chr5_3:27801312-27801331 None:intergenic 50.0%
CCCATTGCAGGACATGCAAA+TGG - chr5_3:27801420-27801439 Msa0807040:CDS 50.0%
!! AGGCTGTATCCGTCGATTCT+GGG - chr5_3:27801493-27801512 Msa0807040:intron 50.0%
CAAGTCAACCCCAGAATCGA+CGG + chr5_3:27801505-27801524 None:intergenic 50.0%
!! GTCGATTCTGGGGTTGACTT+GGG - chr5_3:27801504-27801523 Msa0807040:intron 50.0%
AGCTGTGCAGATGGCACTAT+GGG - chr5_3:27801828-27801847 Msa0807040:intron 50.0%
TCACTCCCATCAACGGTTGA+AGG + chr5_3:27802020-27802039 None:intergenic 50.0%
TGAGCCCATGTATGAAGGAG+AGG - chr5_3:27802037-27802056 Msa0807040:intron 50.0%
ACCTGTTTATGAAGGGGAGG+CGG - chr5_3:27802103-27802122 Msa0807040:intron 50.0%
!! CCTTGGATCAAGGGCATCTA+AGG + chr5_3:27802156-27802175 None:intergenic 50.0%
CCTTAGATGCCCTTGATCCA+AGG - chr5_3:27802153-27802172 Msa0807040:intron 50.0%
CTTCCTTAGCCCTTGGATCA+AGG + chr5_3:27802166-27802185 None:intergenic 50.0%
TAGCACCACTGACCTTGTTC+TGG + chr5_3:27802197-27802216 None:intergenic 50.0%
ATGCGTTGCACTCTCTATGC+TGG + chr5_3:27803352-27803371 None:intergenic 50.0%
! ATAGAGAGTGCAACGCATGC+AGG - chr5_3:27803354-27803373 Msa0807040:intron 50.0%
AGAGGACTGTGGTCACAAGA+AGG + chr5_3:27804259-27804278 None:intergenic 50.0%
TGTAGGGAAGTAGAGGACTG+TGG + chr5_3:27804270-27804289 None:intergenic 50.0%
! TAGACGTTGACTAACAGGGC+AGG - chr5_3:27804498-27804517 Msa0807040:five_prime_UTR 50.0%
TTGACTAACAGGGCAGGAAG+TGG - chr5_3:27804504-27804523 Msa0807040:five_prime_UTR 50.0%
TACGGAATGGAATCCGCGTG+TGG + chr5_3:27798132-27798151 None:intergenic 55.0%
CGTGCTCATCACCATGGACA+TGG - chr5_3:27798299-27798318 Msa0807040:three_prime_UTR 55.0%
GCTCATCACCATGGACATGG+CGG - chr5_3:27798302-27798321 Msa0807040:three_prime_UTR 55.0%
! TGATGATGCCGCCATGTCCA+TGG + chr5_3:27798313-27798332 None:intergenic 55.0%
TGATCTTGAGGAGGAGGAGG+AGG + chr5_3:27798360-27798379 None:intergenic 55.0%
CAGATAGCGAGGAGAGGACA+AGG + chr5_3:27798522-27798541 None:intergenic 55.0%
CCCTAACAGATAGCGAGGAG+AGG + chr5_3:27798528-27798547 None:intergenic 55.0%
GCTGCAACAACTGCTGCTCT+TGG - chr5_3:27801240-27801259 Msa0807040:CDS 55.0%
!! CAGGCTGTATCCGTCGATTC+TGG - chr5_3:27801492-27801511 Msa0807040:intron 55.0%
!! GGCTGTATCCGTCGATTCTG+GGG - chr5_3:27801494-27801513 Msa0807040:intron 55.0%
!! CGTCGATTCTGGGGTTGACT+TGG - chr5_3:27801503-27801522 Msa0807040:intron 55.0%
GAGCTGTGCAGATGGCACTA+TGG - chr5_3:27801827-27801846 Msa0807040:intron 55.0%
GCTGTGCAGATGGCACTATG+GGG - chr5_3:27801829-27801848 Msa0807040:intron 55.0%
CTGTGCAGATGGCACTATGG+GGG - chr5_3:27801830-27801849 Msa0807040:intron 55.0%
TGTGCAGATGGCACTATGGG+GGG - chr5_3:27801831-27801850 Msa0807040:intron 55.0%
CATGGGCTCACTCCCATCAA+CGG + chr5_3:27802027-27802046 None:intergenic 55.0%
GGGAGTGAGCCCATGTATGA+AGG - chr5_3:27802032-27802051 Msa0807040:intron 55.0%
ACCGCCTCCCCTTCATAAAC+AGG + chr5_3:27802107-27802126 None:intergenic 55.0%
TGCCCTTGATCCAAGGGCTA+AGG - chr5_3:27802160-27802179 Msa0807040:intron 55.0%
! GGTACTTCCAGACTGGTCAC+AGG - chr5_3:27803742-27803761 Msa0807040:intron 55.0%
GGATTCCTTCCTGTGCTCCT+TGG + chr5_3:27804053-27804072 None:intergenic 55.0%
TCAGGCTTGGGAGATGAAGG+TGG + chr5_3:27804074-27804093 None:intergenic 55.0%
GCATCAGGCTTGGGAGATGA+AGG + chr5_3:27804077-27804096 None:intergenic 55.0%
ACAAGAAGGACCTGCCACTG+TGG + chr5_3:27804245-27804264 None:intergenic 55.0%
! TCGGCCCGTTCTGTGTTGAT+TGG - chr5_3:27804346-27804365 Msa0807040:five_prime_UTR 55.0%
CTAACAGGGCAGGAAGTGGA+TGG - chr5_3:27804508-27804527 Msa0807040:five_prime_UTR 55.0%
GGAGGAGGAGGTTCGTTCGT+TGG + chr5_3:27798348-27798367 None:intergenic 60.0%
TTGCTCCCTAGGCTTGCCAC+TGG - chr5_3:27800197-27800216 Msa0807040:intron 60.0%
! TTGCAGGTGCCAAGGAGCAC+AGG - chr5_3:27804041-27804060 Msa0807040:intron 60.0%
! AGGTGCCAAGGAGCACAGGA+AGG - chr5_3:27804045-27804064 Msa0807040:intron 60.0%
TGAAGGGGAGGCGGTGCTTC+AGG - chr5_3:27802112-27802131 Msa0807040:intron 65.0%
GGAGGCGGTGCTTCAGGAAC+AGG - chr5_3:27802118-27802137 Msa0807040:intron 65.0%
CTGGGGACCTGTGACCAGTC+TGG + chr5_3:27803752-27803771 None:intergenic 65.0%
! CAGACTGGTCACAGGTCCCC+AGG - chr5_3:27803750-27803769 Msa0807040:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 27797988 27804600 27797988 ID=Msa0807040;Name=Msa0807040
chr5_3 mRNA 27797988 27804600 27797988 ID=Msa0807040-mRNA-1;Parent=Msa0807040;Name=Msa0807040-mRNA-1;_AED=0.07;_eAED=0.07;_QI=324|1|1|1|1|0.90|11|924|676
chr5_3 exon 27797988 27798541 27797988 ID=Msa0807040-mRNA-1:exon:9891;Parent=Msa0807040-mRNA-1
chr5_3 exon 27798817 27799249 27798817 ID=Msa0807040-mRNA-1:exon:9890;Parent=Msa0807040-mRNA-1
chr5_3 exon 27799337 27799444 27799337 ID=Msa0807040-mRNA-1:exon:9889;Parent=Msa0807040-mRNA-1
chr5_3 exon 27799768 27799848 27799768 ID=Msa0807040-mRNA-1:exon:9888;Parent=Msa0807040-mRNA-1
chr5_3 exon 27800011 27800092 27800011 ID=Msa0807040-mRNA-1:exon:9887;Parent=Msa0807040-mRNA-1
chr5_3 exon 27800214 27800268 27800214 ID=Msa0807040-mRNA-1:exon:9886;Parent=Msa0807040-mRNA-1
chr5_3 exon 27800385 27801483 27800385 ID=Msa0807040-mRNA-1:exon:9885;Parent=Msa0807040-mRNA-1
chr5_3 exon 27802170 27802257 27802170 ID=Msa0807040-mRNA-1:exon:9884;Parent=Msa0807040-mRNA-1
chr5_3 exon 27802342 27802448 27802342 ID=Msa0807040-mRNA-1:exon:9883;Parent=Msa0807040-mRNA-1
chr5_3 exon 27802532 27802650 27802532 ID=Msa0807040-mRNA-1:exon:9882;Parent=Msa0807040-mRNA-1
chr5_3 exon 27804048 27804600 27804048 ID=Msa0807040-mRNA-1:exon:9881;Parent=Msa0807040-mRNA-1
chr5_3 five_prime_UTR 27804277 27804600 27804277 ID=Msa0807040-mRNA-1:five_prime_utr;Parent=Msa0807040-mRNA-1
chr5_3 CDS 27804048 27804276 27804048 ID=Msa0807040-mRNA-1:cds;Parent=Msa0807040-mRNA-1
chr5_3 CDS 27802532 27802650 27802532 ID=Msa0807040-mRNA-1:cds;Parent=Msa0807040-mRNA-1
chr5_3 CDS 27802342 27802448 27802342 ID=Msa0807040-mRNA-1:cds;Parent=Msa0807040-mRNA-1
chr5_3 CDS 27802170 27802257 27802170 ID=Msa0807040-mRNA-1:cds;Parent=Msa0807040-mRNA-1
chr5_3 CDS 27800385 27801483 27800385 ID=Msa0807040-mRNA-1:cds;Parent=Msa0807040-mRNA-1
chr5_3 CDS 27800214 27800268 27800214 ID=Msa0807040-mRNA-1:cds;Parent=Msa0807040-mRNA-1
chr5_3 CDS 27800011 27800092 27800011 ID=Msa0807040-mRNA-1:cds;Parent=Msa0807040-mRNA-1
chr5_3 CDS 27799768 27799848 27799768 ID=Msa0807040-mRNA-1:cds;Parent=Msa0807040-mRNA-1
chr5_3 CDS 27799337 27799444 27799337 ID=Msa0807040-mRNA-1:cds;Parent=Msa0807040-mRNA-1
chr5_3 CDS 27799187 27799249 27799187 ID=Msa0807040-mRNA-1:cds;Parent=Msa0807040-mRNA-1
chr5_3 three_prime_UTR 27798817 27799186 27798817 ID=Msa0807040-mRNA-1:three_prime_utr;Parent=Msa0807040-mRNA-1
chr5_3 three_prime_UTR 27797988 27798541 27797988 ID=Msa0807040-mRNA-1:three_prime_utr;Parent=Msa0807040-mRNA-1
Gene Sequence

>Msa0807040

ATGGACATGGCGGCATCATCATCTTCATCTTCTCCAACGAACGAACCTCCTCCTCCTCCTCAAGATCAACATCACGATCTTCAACATCAACTTCAACAAGAACAACAACAGCAATCTTCACCAATCATCAAAGACTTTCTTCACAAAACCAAAATCATTCAGTTTCTTGGTCGCACCACTCCGATCGTCCTTCAAAACGATAATGGACCTTGTCCTCTCCTCGCTATCTGTAACGTTCTTCTGCTACGAAACCAGTTAGGTTTGAGCTCAGATATTGGTGAAGTCTCACAGGAGAAGTTGCTTTCATTGGTTGCTGAGCGATTGCTTGATTCAAATAGTAATGTGAATAACAAAGATGCAGGCTATGTTGAAAATCAACAACAGAACATTGCCGATGCAATTGATTTGCTCCCTAGGCTTGCCACTGGAATTGATGTAAATCTAAAATTTACGAGAATAGATGATTTTGAATTCACTCCAGAGTGTGCCATATTTGATTTGCTGGACATTCCTTTGTATCATGGCTGGATAGTTGATCAGCAGGATCATGATACTGCAACTGCAATTGGATCGAAGTCCTATAATGCCCTTATGGGAGAGCTTGTTTCTCTTGAAACACGGAACATTGAAACTCTACCAAAAAATAATCCGGAAGAAGAAGATTGTGTTGATTTTGTTGCTGCAACAACTGCTGCTCTTGGAGTGCCTTCTCCCAGTCTTTCTAAAACCAGGTCTTTTGATGATTCTCCGCGTTCTGTTTCTGATCAGGCACCAAGAAAAGGTGATCTTGAAGAAGAAGAAGAGCTGTTGAGAGCCTTGAAGATGTCTGAAGTTGATTCTGTAGCTTTAATTAGTGATCCCATTGCAGGACATGCAAATGGTAATGGGGGAGAAGTTTCTTTTGGTATGGACAAAAATATGTGTGACAAACAGGCTGTATCCGTCGATTCTGGGGTTGACTTGGGAAAGAACACTGGTAAAGAAAGCAGTGACTTTCATGAATCAGAAACCTTCATACCTGATGATTCCACTGCTTCTAGTAAAGACTATAATGAACATACATCTTCTACATCTACATTGGGGGAAGCAGCTAATCCGTTCTTTAAGAATGATGCTGTAAGTGGCTTCCATCAATCAGCTTCTATGGAACCTGAAGAATCTACTGAACAAAACGATGTGGTTGAGAAGCATAAACTTGATGCATTAGTTCAGAATAAGAGTGCAGCCATCCATTCTCCTGAAAAATATTGTGTTTCTGTTTTTGAGAGCTGTGCAGATGGCACTATGGGGGGTGAAAAAGTTCACAATCAATCCTCCCTTACATCTATAGATCATGAAACTTCAGATGAATCTCAAGGACTTGATGCAACAGGAGTGCCATGCTTATCTGCAAGCCATACAGATTCGGATTCTTCTGGTATCAGATTTCATCAAACTGATGCTTCAGGAACATTTCCTTCAACCGTTGATGGGAGTGAGCCCATGTATGAAGGAGAGGAATGTGTGTTGGATACAAAAACTGGAAATTTTGAGAATCGTGAACCTGTTTATGAAGGGGAGGCGGTGCTTCAGGAACAGGCCGACAAAAGCACCTTAGATGCCCTTGATCCAAGGGCTAAGGAAGAAATTACTCCAGAACAAGGAGAACTGGTAAAGAGTTTTTTGAAGAATAATGCCAGTCAGTTGACATTTTACGGGCTTTTCTGTCTTCAAGATGGTCTTAAAGAGCGTGAGTTATGTGTTTTTTTCCGAAACAATCATTTCAGCACCATGTTTAAGTTTGAGGGTGAGCTCTATCTTCTAGCTACAGACCAAGGCTACATAAATCAGCCTGATCTGGTTTGGGAAAAACTGAATGAGGTCAACGGTGATACATTGTTTATGACTGGTAATTTCAAGGAATTCAAGGTAGAAAGCCATGAAAATAACACCACCTGGGATGAGAATAATGTTATGACCAACACTGCTGACTATCTTGCCAGCATAGAGAGTGCAACGCATGCAGGCTTAGATGTCAAGTTGAGTTTCTGA
Protein sequence

>Msa0807040

MDMAASSSSSSPTNEPPPPPQDQHHDLQHQLQQEQQQQSSPIIKDFLHKTKIIQFLGRTTPIVLQNDNGPCPLLAICNVLLLRNQLGLSSDIGEVSQEKLLSLVAERLLDSNSNVNNKDAGYVENQQQNIADAIDLLPRLATGIDVNLKFTRIDDFEFTPECAIFDLLDIPLYHGWIVDQQDHDTATAIGSKSYNALMGELVSLETRNIETLPKNNPEEEDCVDFVAATTAALGVPSPSLSKTRSFDDSPRSVSDQAPRKGDLEEEEELLRALKMSEVDSVALISDPIAGHANGNGGEVSFGMDKNMCDKQAVSVDSGVDLGKNTGKESSDFHESETFIPDDSTASSKDYNEHTSSTSTLGEAANPFFKNDAVSGFHQSASMEPEESTEQNDVVEKHKLDALVQNKSAAIHSPEKYCVSVFESCADGTMGGEKVHNQSSLTSIDHETSDESQGLDATGVPCLSASHTDSDSSGIRFHQTDASGTFPSTVDGSEPMYEGEECVLDTKTGNFENREPVYEGEAVLQEQADKSTLDALDPRAKEEITPEQGELVKSFLKNNASQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKFEGELYLLATDQGYINQPDLVWEKLNEVNGDTLFMTGNFKEFKVESHENNTTWDENNVMTNTADYLASIESATHAGLDVKLSF*