AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0832980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0832980 MtrunA17_Chr5g0398191 94.316 651 35 2 26 675 22 671 0.0 1224
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0832980 AT4G11860.1 72.112 251 68 2 31 280 18 267 1.90e-109 346
Msa0832980 AT4G22960.1 36.364 242 102 4 42 283 6 195 1.81e-35 141
Msa0832980 AT4G22960.1 41.304 138 74 1 517 654 333 463 6.19e-29 122

Find 213 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACCAGTTGCTGTAATTT+TGG 0.090062 5_4:+6155407 None:intergenic
TCATTTCAGCACCATGTTTA+AGG 0.142633 5_4:-6157036 Msa0832980:intron
ACCAAAATCATTCAGTTTCT+TGG 0.155115 5_4:-6161133 Msa0832980:CDS
ACCAAGAAACTGAATGATTT+TGG 0.168902 5_4:+6161132 None:intergenic
ATAAAAGGATTTGAACATTT+TGG 0.200919 5_4:-6155046 Msa0832980:three_prime_UTR
CAGGCTGTATCCGTCGATTC+TGG 0.202554 5_4:-6158100 Msa0832980:CDS
GCCGAAGCTCACAGAAATTT+TGG 0.205966 5_4:+6155265 None:intergenic
CTCTCCCATAAGGGCATTAT+AGG 0.239042 5_4:+6158453 None:intergenic
TACATCATCTATTCATCTTT+GGG 0.271420 5_4:+6161604 None:intergenic
TTACATCATCTATTCATCTT+TGG 0.274268 5_4:+6161603 None:intergenic
TATAGATAGATAACAAATAT+TGG 0.291865 5_4:-6161430 Msa0832980:five_prime_UTR
TGACAAACAAGAGAAATTAA+AGG 0.293747 5_4:+6161329 None:intergenic
TATCATTAAGGATGCTTATC+AGG 0.301168 5_4:+6156128 None:intergenic
TGAAGGGGAGGCGGTGCTTC+AGG 0.309136 5_4:-6157480 Msa0832980:CDS
TCAACACAATCTTCTTCTTC+CGG 0.316694 5_4:+6158382 None:intergenic
CCTTGGATCAAGGGCATCTA+AGG 0.343339 5_4:+6157439 None:intergenic
CTGGACATTCCTTTGTATCA+TGG 0.345688 5_4:-6159215 Msa0832980:CDS
CTTCCATCAATCAGCTTCTA+TGG 0.345760 5_4:-6157906 Msa0832980:CDS
GAAGTCCTATAATGCCCTTA+TGG 0.346813 5_4:-6158458 Msa0832980:CDS
CATACAGATTCGGATTCTTC+TGG 0.351461 5_4:-6157635 Msa0832980:CDS
GTGTGCCATATTTGATTTGC+TGG 0.351486 5_4:-6159234 Msa0832980:CDS
TCAAGTTTCTTTGTAAATAT+AGG 0.353111 5_4:-6155388 Msa0832980:three_prime_UTR
TAAATCAGCCTGATCTGGTT+TGG 0.362632 5_4:-6156810 Msa0832980:CDS
TAGTTTGTAGTTTAAATGTT+TGG 0.368390 5_4:+6156048 None:intergenic
TCGGCCCGTTCTGTGTTGAT+TGG 0.369450 5_4:-6155247 Msa0832980:three_prime_UTR
TCCGCGTTCTGTTTCTGATC+AGG 0.373342 5_4:-6158284 Msa0832980:CDS
CATGATACTGCAACTGCAAT+TGG 0.373408 5_4:-6158484 Msa0832980:CDS
GGAGGCGGTGCTTCAGGAAC+AGG 0.376020 5_4:-6157474 Msa0832980:CDS
CGTCGATTCTGGGGTTGACT+TGG 0.376917 5_4:-6158089 Msa0832980:CDS
CAGGACATGCAAATGGTAAT+GGG 0.378085 5_4:-6158165 Msa0832980:CDS
CAAGCGCACTGATATCATTA+AGG 0.378224 5_4:+6156116 None:intergenic
ACCAAAATTTCTGTGAGCTT+CGG 0.380582 5_4:-6155266 Msa0832980:three_prime_UTR
CGCTTGGATGAGCTAACTTT+GGG 0.381962 5_4:-6156099 Msa0832980:three_prime_UTR
AGAGTGTGGTGTGGCCAATT+AGG 0.382147 5_4:+6161396 None:intergenic
TTTCATCAAACTGATGCTTC+AGG 0.384765 5_4:-6157605 Msa0832980:CDS
GACAAACAAGAGAAATTAAA+GGG 0.385360 5_4:+6161330 None:intergenic
AAGTCCTATAATGCCCTTAT+GGG 0.386156 5_4:-6158457 Msa0832980:CDS
TTAATTAGTGATCCCATTGC+AGG 0.387097 5_4:-6158184 Msa0832980:CDS
TATCCCAAAATTACAGCAAC+TGG 0.387174 5_4:-6155411 Msa0832980:three_prime_UTR
GTTGACTTTAACTTCAGTTA+TGG 0.387898 5_4:-6156017 Msa0832980:three_prime_UTR
ACAGGAGAAGTTGCTTTCAT+TGG 0.390098 5_4:-6159596 Msa0832980:CDS
TAGCACCACTGACCTTGTTC+TGG 0.392458 5_4:+6157398 None:intergenic
TTGTCTTTAGATTTCGCATC+AGG 0.393702 5_4:+6155504 None:intergenic
GTAATTTCTTCCTTAGCCCT+TGG 0.397455 5_4:+6157422 None:intergenic
CTTCCTTAGCCCTTGGATCA+AGG 0.398764 5_4:+6157429 None:intergenic
GAGAAACAAGCTCTCCCATA+AGG 0.403032 5_4:+6158443 None:intergenic
GGATTCCTTCCTGTGCTCCT+TGG 0.406279 5_4:+6155543 None:intergenic
TTAGGTTTGAGCTCAGATAT+TGG 0.406340 5_4:-6159628 Msa0832980:CDS
CCCTTCTATTCACAGTTTGA+GGG 0.407165 5_4:-6156868 Msa0832980:intron
AGGCTGTATCCGTCGATTCT+GGG 0.407335 5_4:-6158099 Msa0832980:CDS
GAGCTGTGCAGATGGCACTA+TGG 0.407733 5_4:-6157765 Msa0832980:CDS
CTTCTGCTACGAAACCAGTT+AGG 0.412210 5_4:-6159646 Msa0832980:CDS
AATGTCCAGCAAATCAAATA+TGG 0.413781 5_4:+6159229 None:intergenic
AGCTGTGCAGATGGCACTAT+GGG 0.415753 5_4:-6157764 Msa0832980:CDS
ACATCTTCTACATCTACATT+GGG 0.415962 5_4:-6157971 Msa0832980:CDS
TTTAGATTTCGCATCAGGCT+TGG 0.418673 5_4:+6155509 None:intergenic
TGATCTTGAGGAGGAGGAGG+AGG 0.419324 5_4:+6161235 None:intergenic
ACCGCCTCCCCTTCATAAAC+AGG 0.421149 5_4:+6157488 None:intergenic
TATCTGAGCTCAAACCTAAC+TGG 0.421498 5_4:+6159632 None:intergenic
TTAGATTTCGCATCAGGCTT+GGG 0.423326 5_4:+6155510 None:intergenic
AAATTATCAAAGTGTAGGGC+TGG 0.426459 5_4:+6155197 None:intergenic
AAATCAGCCTGATCTGGTTT+GGG 0.426513 5_4:-6156809 Msa0832980:CDS
GCGCTTGGATGAGCTAACTT+TGG 0.431229 5_4:-6156100 Msa0832980:three_prime_UTR
ATCTGCAAGCCATACAGATT+CGG 0.431647 5_4:-6157645 Msa0832980:CDS
TTCCTTAGCCCTTGGATCAA+GGG 0.434399 5_4:+6157430 None:intergenic
TGAAGAAAGTCTTTGATGAT+TGG 0.435183 5_4:+6161160 None:intergenic
GTTTATGACTGGTAATTTCA+AGG 0.435309 5_4:-6156432 Msa0832980:CDS
GCTGCAACAACTGCTGCTCT+TGG 0.442455 5_4:-6158352 Msa0832980:CDS
GGAGGAGGAGGTTCGTTCGT+TGG 0.443283 5_4:+6161256 None:intergenic
TTTCATGATCTATAGATGTA+AGG 0.443480 5_4:+6157714 None:intergenic
GGTTGAAATTTGAGAGGTAA+AGG 0.445210 5_4:+6155286 None:intergenic
CTACATAAATCAGCCTGATC+TGG 0.445409 5_4:-6156815 Msa0832980:CDS
ATCAACTTCAGACATCTTCA+AGG 0.446591 5_4:+6158216 None:intergenic
GCAGGACATGCAAATGGTAA+TGG 0.448164 5_4:-6158166 Msa0832980:CDS
ACATTCCTCTCCTTCATACA+TGG 0.451244 5_4:+6157550 None:intergenic
ATCGTCCTTCAAAACGATAA+TGG 0.452482 5_4:-6161097 Msa0832980:CDS
TTTAAGAATGATGCTGTAAG+TGG 0.456550 5_4:-6157929 Msa0832980:CDS
ACATTTCCTTCAACCGTTGA+TGG 0.456915 5_4:-6157581 Msa0832980:CDS
GTTCCATAGAAGCTGATTGA+TGG 0.459091 5_4:+6157903 None:intergenic
CTAGTTAGACGTTGACTGAC+AGG 0.462613 5_4:-6155100 Msa0832980:three_prime_UTR
ACATTCCTTTGTATCATGGC+TGG 0.464219 5_4:-6159211 Msa0832980:CDS
CCATTTGCATGTCCTGCAAT+GGG 0.466921 5_4:+6158172 None:intergenic
CAACAAACACCATCTGTTAG+TGG 0.467432 5_4:-6155872 Msa0832980:three_prime_UTR
CAGGCTGATTTATGTAGCCT+TGG 0.469871 5_4:+6156821 None:intergenic
CATTTCCTTCAACCGTTGAT+GGG 0.476133 5_4:-6157580 Msa0832980:CDS
TGGTAATTTCAAGGAATTCA+AGG 0.476217 5_4:-6156423 Msa0832980:CDS
CTTAATGATATCAGTGCGCT+TGG 0.476354 5_4:-6156115 Msa0832980:three_prime_UTR
TATTTCTTCAATTTCATCTG+TGG 0.486914 5_4:+6161575 None:intergenic
GCATCAGGCTTGGGAGATGA+AGG 0.486972 5_4:+6155519 None:intergenic
CAGAAGAATCCGAATCTGTA+TGG 0.487282 5_4:+6157636 None:intergenic
TCACTCCCATCAACGGTTGA+AGG 0.487379 5_4:+6157575 None:intergenic
ATGCAATTGATTTGCTCCCT+AGG 0.487788 5_4:-6159406 Msa0832980:CDS
ACCATTTGCATGTCCTGCAA+TGG 0.488204 5_4:+6158171 None:intergenic
CTCCCAGTCTTTCTAAAACC+AGG 0.488244 5_4:-6158321 Msa0832980:CDS
TCTCAAGGACTTGATGCAAC+AGG 0.488327 5_4:-6157680 Msa0832980:CDS
TGGTGCTGAAATGATTGTTT+CGG 0.489544 5_4:+6157045 None:intergenic
ACAGCCAATCAACACAGAAC+GGG 0.491132 5_4:+6155243 None:intergenic
TACATCTTCTACATCTACAT+TGG 0.492761 5_4:-6157972 Msa0832980:CDS
CTAGAAGCAGTGGAATCATC+AGG 0.501078 5_4:+6158013 None:intergenic
GTAAGTAGTATCAATTGTTA+CGG 0.501570 5_4:+6161466 None:intergenic
TCTGATCAGGCACCAAGAAA+AGG 0.504311 5_4:-6158271 Msa0832980:CDS
GTCGATTCTGGGGTTGACTT+GGG 0.507700 5_4:-6158088 Msa0832980:CDS
GGTGATACATTGTTTATGAC+TGG 0.508580 5_4:-6156443 Msa0832980:CDS
CCCATTGCAGGACATGCAAA+TGG 0.508903 5_4:-6158172 Msa0832980:CDS
ACTAAAATTATCAAAGTGTA+GGG 0.509350 5_4:+6155193 None:intergenic
TGTTGATCTTGAGGAGGAGG+AGG 0.509944 5_4:+6161232 None:intergenic
CTCAAACTCTTGTTGTTGCA+AGG 0.510580 5_4:+6155916 None:intergenic
CTTCAATTTCATCTGTGGTG+TGG 0.511660 5_4:+6161580 None:intergenic
TCAATTCCAGTGGCAAGCCT+AGG 0.516534 5_4:+6159389 None:intergenic
TGGCTGGATAGTTGATCAGC+AGG 0.518208 5_4:-6159195 Msa0832980:intron
TTGCTCCCTAGGCTTGCCAC+TGG 0.521610 5_4:-6159395 Msa0832980:CDS
TTGACTGACAGGGCAGGAAG+TGG 0.522756 5_4:-6155089 Msa0832980:three_prime_UTR
CAAACAAAATATCAAGTGTA+GGG 0.523223 5_4:+6155310 None:intergenic
AGAAACAAGCTCTCCCATAA+GGG 0.523662 5_4:+6158444 None:intergenic
CCTTAGATGCCCTTGATCCA+AGG 0.525313 5_4:-6157439 Msa0832980:CDS
AATCGTGAACCTGTTTATGA+AGG 0.525418 5_4:-6157497 Msa0832980:CDS
ATGCGTTGCACTCTCTATGC+TGG 0.525607 5_4:+6156244 None:intergenic
CCAAACAAAATATCAAGTGT+AGG 0.528933 5_4:+6155309 None:intergenic
AATTATCAAAGTGTAGGGCT+GGG 0.530468 5_4:+6155198 None:intergenic
TGAAGGAGAGGAATGTGTGT+TGG 0.531144 5_4:-6157543 Msa0832980:CDS
TTGCAGGTGCCAAGGAGCAC+AGG 0.534470 5_4:-6155552 Msa0832980:intron
AAATAGTGTACCACAGTGGC+AGG 0.536901 5_4:-6155361 Msa0832980:three_prime_UTR
CAGACTGGTCACAGGTCCCC+AGG 0.537459 5_4:-6155843 Msa0832980:intron
AGTGGAATCATCAGGTATGA+AGG 0.539824 5_4:+6158021 None:intergenic
TGATGTTGATCTTGAGGAGG+AGG 0.541054 5_4:+6161229 None:intergenic
TGCCCTTGATCCAAGGGCTA+AGG 0.542288 5_4:-6157432 Msa0832980:CDS
ATCGTGAACCTGTTTATGAA+GGG 0.542826 5_4:-6157496 Msa0832980:CDS
ATAGAGAGTGCAACGCATGC+AGG 0.545017 5_4:-6156239 Msa0832980:CDS
GGCTTACAGAACAAAGATGC+AGG 0.545976 5_4:-6159461 Msa0832980:intron
TAGTATCAATTGTTACGGAA+TGG 0.547592 5_4:+6161471 None:intergenic
CAGATAGCGAGGAGAGGACA+AGG 0.549609 5_4:+6161073 None:intergenic
TTCATGATCTATAGATGTAA+GGG 0.554085 5_4:+6157715 None:intergenic
AACTAAAATTATCAAAGTGT+AGG 0.556093 5_4:+6155192 None:intergenic
GAAAATACGTACAGCAGTGT+TGG 0.556829 5_4:+6156352 None:intergenic
CATAACATTATTCTCATCCC+AGG 0.557109 5_4:+6156376 None:intergenic
CTTAGATGCCCTTGATCCAA+GGG 0.560698 5_4:-6157438 Msa0832980:CDS
GCCATGAAAATAACACCACC+TGG 0.563001 5_4:-6156394 Msa0832980:CDS
ACAGCATCATTCTTAAAGAA+CGG 0.564978 5_4:+6157935 None:intergenic
CACAGCCAATCAACACAGAA+CGG 0.565012 5_4:+6155242 None:intergenic
GGCTGTATCCGTCGATTCTG+GGG 0.566892 5_4:-6158098 Msa0832980:CDS
TATCAAGTGTAGGGAAGTAG+AGG 0.566991 5_4:+6155319 None:intergenic
CCCGTAAAATGTCAACTGAC+TGG 0.567190 5_4:+6157239 None:intergenic
TGGTGTGGCCAATTAGGAAA+TGG 0.568312 5_4:+6161402 None:intergenic
AGATATTGGTGAAGTCTCAC+AGG 0.573083 5_4:-6159614 Msa0832980:CDS
GAAATTGAAGAAATAGTGAG+AGG 0.574131 5_4:-6161567 Msa0832980:five_prime_UTR
TAGACGTTGACTGACAGGGC+AGG 0.576377 5_4:-6155095 Msa0832980:three_prime_UTR
AGCTTGTTTCTCTTGAAACA+CGG 0.578655 5_4:-6158432 Msa0832980:CDS
ATAGTCTTTACTAGAAGCAG+TGG 0.579508 5_4:+6158003 None:intergenic
CGGAGAATCATCAAAAGACC+TGG 0.582351 5_4:+6158303 None:intergenic
CAATTCCAGTGGCAAGCCTA+GGG 0.583869 5_4:+6159390 None:intergenic
AATGCTATTTGCAGGTGCCA+AGG 0.584271 5_4:-6155560 Msa0832980:intron
TGTTAGTGGTACTTCCAGAC+TGG 0.586591 5_4:-6155858 Msa0832980:three_prime_UTR
CGTGCACAACACCATGGACA+TGG 0.589520 5_4:-6161302 Msa0832980:exon
GAAACTTCAGATGAATCTCA+AGG 0.591179 5_4:-6157695 Msa0832980:CDS
CAAAGAAACTTCACCACACG+CGG 0.592484 5_4:-6161497 Msa0832980:five_prime_UTR
AATTGAAGAAATAGTGAGAG+GGG 0.593282 5_4:-6161565 Msa0832980:five_prime_UTR
CAAGTCAACCCCAGAATCGA+CGG 0.594894 5_4:+6158090 None:intergenic
TAGATTTACATCAATTCCAG+TGG 0.596577 5_4:+6159379 None:intergenic
GGGAGTGAGCCCATGTATGA+AGG 0.598272 5_4:-6157560 Msa0832980:CDS
TGAGCCCATGTATGAAGGAG+AGG 0.599669 5_4:-6157555 Msa0832980:CDS
AAATCAAATATGGCACACTC+TGG 0.599733 5_4:+6159239 None:intergenic
ACTATCCAGCCATGATACAA+AGG 0.600114 5_4:+6159206 None:intergenic
ACCTGTTTATGAAGGGGAGG+CGG 0.600986 5_4:-6157489 Msa0832980:CDS
CTGACAGGGCAGGAAGTGGA+TGG 0.604988 5_4:-6155085 Msa0832980:three_prime_UTR
TGATGATGCCGCCATGTCCA+TGG 0.605923 5_4:+6161291 None:intergenic
GTACTCATCTTTCAGGTCAA+CGG 0.605959 5_4:-6156464 Msa0832980:intron
AGGGAGCAAATCAATTGCAT+CGG 0.613034 5_4:+6159409 None:intergenic
AAATTGAAGAAATAGTGAGA+GGG 0.616243 5_4:-6161566 Msa0832980:five_prime_UTR
TAGTTAGACGTTGACTGACA+GGG 0.618641 5_4:-6155099 Msa0832980:three_prime_UTR
GGTACTTCCAGACTGGTCAC+AGG 0.619489 5_4:-6155851 Msa0832980:three_prime_UTR
CTGTGCAGATGGCACTATGG+GGG 0.624148 5_4:-6157762 Msa0832980:CDS
CATGGGCTCACTCCCATCAA+CGG 0.627182 5_4:+6157568 None:intergenic
TCAGGCTTGGGAGATGAAGG+TGG 0.628059 5_4:+6155522 None:intergenic
TCGTGAACCTGTTTATGAAG+GGG 0.628818 5_4:-6157495 Msa0832980:CDS
CATTCCTCTCCTTCATACAT+GGG 0.629597 5_4:+6157551 None:intergenic
AGAGGACTGTGGTCACAAGA+AGG 0.629973 5_4:+6155337 None:intergenic
CATCTTCTACATCTACATTG+GGG 0.630573 5_4:-6157970 Msa0832980:CDS
AGATCGTGATGTTGATCTTG+AGG 0.632376 5_4:+6161223 None:intergenic
GGAAACCCTAACAGATAGCG+AGG 0.633808 5_4:+6161062 None:intergenic
GTATGGCTTGCAGATAAGCA+TGG 0.634359 5_4:+6157653 None:intergenic
TGTGCAGATGGCACTATGGG+GGG 0.637135 5_4:-6157761 Msa0832980:CDS
ATGATCTATAGATGTAAGGG+AGG 0.638564 5_4:+6157718 None:intergenic
GGTGTTTGTTGATTCTGTCG+TGG 0.640190 5_4:+6155884 None:intergenic
CCCTAACAGATAGCGAGGAG+AGG 0.640372 5_4:+6161067 None:intergenic
TGTTATCTATCTATATAATG+CGG 0.641014 5_4:+6161438 None:intergenic
CAAGAACGTGCACAACACCA+TGG 0.643130 5_4:-6161308 Msa0832980:exon
AGGACATGCAAATGGTAATG+GGG 0.643223 5_4:-6158164 Msa0832980:CDS
GTTGACTTGGGAAAGAACAC+TGG 0.643861 5_4:-6158076 Msa0832980:CDS
TGAACCTGTTTATGAAGGGG+AGG 0.645413 5_4:-6157492 Msa0832980:CDS
TGCATCTGAGTAGAGAGTAG+AGG 0.645710 5_4:-6161529 Msa0832980:five_prime_UTR
AGGTGCCAAGGAGCACAGGA+AGG 0.648608 5_4:-6155548 Msa0832980:three_prime_UTR
ATCTGAGTAGAGAGTAGAGG+CGG 0.651357 5_4:-6161526 Msa0832980:five_prime_UTR
GGACATGCAAATGGTAATGG+GGG 0.651612 5_4:-6158163 Msa0832980:CDS
GCTGTGCAGATGGCACTATG+GGG 0.655743 5_4:-6157763 Msa0832980:CDS
CTGGAAGTACCACTAACAGA+TGG 0.660411 5_4:+6155863 None:intergenic
TCGTGATGTTGATCTTGAGG+AGG 0.660990 5_4:+6161226 None:intergenic
TACGGAATGGAATCCGCGTG+TGG 0.663542 5_4:+6161484 None:intergenic
ATCTTCTACATCTACATTGG+GGG 0.663963 5_4:-6157969 Msa0832980:CDS
GAAATGAAATGAAAAGAGTG+TGG 0.665175 5_4:+6161382 None:intergenic
GTTTGTTGATTCTGTCGTGG+TGG 0.669815 5_4:+6155887 None:intergenic
GTTGGAGCTCACCTTAAACA+TGG 0.670794 5_4:+6157025 None:intergenic
ATGTAAATCTAAAATTTACG+AGG 0.672596 5_4:-6159367 Msa0832980:intron
GAAGAAATTACTCCAGAACA+AGG 0.675507 5_4:-6157410 Msa0832980:intron
ATCTACTGAACAAAACGATG+TGG 0.681022 5_4:-6157873 Msa0832980:CDS
TATCTTCTAGCTACAGACCA+AGG 0.683187 5_4:-6156838 Msa0832980:CDS
AACATTATTCTCATCCCAGG+TGG 0.684945 5_4:+6156379 None:intergenic
CCATGAAAATAACACCACCT+GGG 0.690099 5_4:-6156393 Msa0832980:CDS
GCACAACACCATGGACATGG+CGG 0.698030 5_4:-6161299 Msa0832980:exon
ACAAGAAGGACCTGCCACTG+TGG 0.720582 5_4:+6155351 None:intergenic
TGTAGGGAAGTAGAGGACTG+TGG 0.722083 5_4:+6155326 None:intergenic
GCCTGATCAGAAACAGAACG+CGG 0.733300 5_4:+6158283 None:intergenic
GAAATGAAAAGAGTGTGGTG+TGG 0.753171 5_4:+6161387 None:intergenic
AAGTAAATAGTGTACCACAG+TGG 0.788077 5_4:-6155365 Msa0832980:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATATAAAGCAAAAT+TGG + chr5_4:6156846-6156865 None:intergenic 10.0%
!!! TATTTTTCAATTTTTTTTGT+AGG - chr5_4:6156859-6156878 Msa0832980:intron 10.0%
!!! TTAGATATTTACTTATTTTA+GGG + chr5_4:6160313-6160332 None:intergenic 10.0%
!!! ATTAGATATTTACTTATTTT+AGG + chr5_4:6160314-6160333 None:intergenic 10.0%
!! AATACAAAAACAAAAAATTA+AGG + chr5_4:6160836-6160855 None:intergenic 10.0%
!!! ATTTTATATATCATATGATT+TGG + chr5_4:6160988-6161007 None:intergenic 10.0%
!! TATAGATAGATAACAAATAT+TGG - chr5_4:6155206-6155225 Msa0832980:three_prime_UTR 15.0%
!! CTATAATTAATACTGTTATT+AGG - chr5_4:6155651-6155670 Msa0832980:intron 15.0%
!! TAAACTAATAATACAATCAT+AGG + chr5_4:6155778-6155797 None:intergenic 15.0%
!! CTAATGAAAATTTACAAATA+AGG + chr5_4:6156163-6156182 None:intergenic 15.0%
!! CGTATTAATATTAAAAGTTT+CGG + chr5_4:6156409-6156428 None:intergenic 15.0%
!!! ATTTTGTTATACTTTTTTTC+TGG - chr5_4:6156802-6156821 Msa0832980:CDS 15.0%
!!! AAGATATCTTTGTTTTTTAT+TGG - chr5_4:6159335-6159354 Msa0832980:intron 15.0%
!! AATAAGTAAATATCTAATCT+TGG - chr5_4:6160316-6160335 Msa0832980:intron 15.0%
!! CATATGATATATAAAATCAT+TGG - chr5_4:6160991-6161010 Msa0832980:intron 15.0%
!!! ATTAAAATTTTCAGGATAAA+AGG - chr5_4:6161575-6161594 Msa0832980:five_prime_UTR 15.0%
!! TGTTATCTATCTATATAATG+CGG + chr5_4:6155201-6155220 None:intergenic 20.0%
!! AGAAATTGAATAATGAAAGA+TGG + chr5_4:6155605-6155624 None:intergenic 20.0%
!! TTAATACTGTTATTAGGTTA+CGG - chr5_4:6155657-6155676 Msa0832980:intron 20.0%
!! ATTCAATTCAATTAGAGATA+AGG + chr5_4:6155827-6155846 None:intergenic 20.0%
!!! TTACATGGTGTTTATATTTT+TGG + chr5_4:6156667-6156686 None:intergenic 20.0%
!! ACAAATCATTAAAGATTACA+TGG + chr5_4:6156682-6156701 None:intergenic 20.0%
!!! TGTCTGACAATTTTTTTTAT+TGG - chr5_4:6157154-6157173 Msa0832980:intron 20.0%
!!! ATGTAAATCTAAAATTTACG+AGG - chr5_4:6157269-6157288 Msa0832980:CDS 20.0%
!! ATCTAATTAATTAGGATTGA+TGG + chr5_4:6157478-6157497 None:intergenic 20.0%
!! GATGATAGATCTAATTAATT+AGG + chr5_4:6157486-6157505 None:intergenic 20.0%
!!! TTTTACATACAGGATTTTTA+GGG + chr5_4:6157583-6157602 None:intergenic 20.0%
!!! ATTTTACATACAGGATTTTT+AGG + chr5_4:6157584-6157603 None:intergenic 20.0%
!!! ATTCATAATTTTCAACATAC+TGG + chr5_4:6157875-6157894 None:intergenic 20.0%
!! AATAATAAATAAACCCTTCA+TGG + chr5_4:6158080-6158099 None:intergenic 20.0%
!!! CTTTGTTTTTTATTGGTTTT+AGG - chr5_4:6159342-6159361 Msa0832980:intron 20.0%
!! GAAGAATAGTATATAAATCA+GGG + chr5_4:6159468-6159487 None:intergenic 20.0%
!! TGAAGAATAGTATATAAATC+AGG + chr5_4:6159469-6159488 None:intergenic 20.0%
!! ATTTATATACTATTCTTCAC+AGG - chr5_4:6159470-6159489 Msa0832980:intron 20.0%
!! TTTAGTTGAATATTACACAA+AGG + chr5_4:6160129-6160148 None:intergenic 20.0%
!!! TGAATAACATTTTTTTCGTA+AGG + chr5_4:6160488-6160507 None:intergenic 20.0%
!!! TAGTTTGTAGTTTAAATGTT+TGG + chr5_4:6160591-6160610 None:intergenic 20.0%
!!! ATGGTTTTATCTATTCAAAA+TGG - chr5_4:6160638-6160657 Msa0832980:intron 20.0%
!!! TTAGTAACAATGAATCTTTT+CGG - chr5_4:6160662-6160681 Msa0832980:intron 20.0%
!!! TTAGAAGCTTGTTTTATAAT+TGG - chr5_4:6161187-6161206 Msa0832980:CDS 20.0%
!! TCAAGTTTCTTTGTAAATAT+AGG - chr5_4:6161248-6161267 Msa0832980:CDS 20.0%
!! ACTAAAATTATCAAAGTGTA+GGG + chr5_4:6161446-6161465 None:intergenic 20.0%
!! AACTAAAATTATCAAAGTGT+AGG + chr5_4:6161447-6161466 None:intergenic 20.0%
!!! TTTTTACATCAATATCACAA+AGG + chr5_4:6161482-6161501 None:intergenic 20.0%
!!! ATAAAAGGATTTGAACATTT+TGG - chr5_4:6161590-6161609 Msa0832980:five_prime_UTR 20.0%
! TACATCATCTATTCATCTTT+GGG + chr5_4:6155035-6155054 None:intergenic 25.0%
! TTACATCATCTATTCATCTT+TGG + chr5_4:6155036-6155055 None:intergenic 25.0%
! TATTTCTTCAATTTCATCTG+TGG + chr5_4:6155064-6155083 None:intergenic 25.0%
! AAATTGAAGAAATAGTGAGA+GGG - chr5_4:6155070-6155089 Msa0832980:three_prime_UTR 25.0%
! GTAAGTAGTATCAATTGTTA+CGG + chr5_4:6155173-6155192 None:intergenic 25.0%
! GACAAACAAGAGAAATTAAA+GGG + chr5_4:6155309-6155328 None:intergenic 25.0%
! TGACAAACAAGAGAAATTAA+AGG + chr5_4:6155310-6155329 None:intergenic 25.0%
! CATATTATTATACTCGTTAC+TGG - chr5_4:6155691-6155710 Msa0832980:intron 25.0%
! TTGTTACTCAATTCATTCTT+TGG - chr5_4:6155799-6155818 Msa0832980:intron 25.0%
! TTAAAAAAGAATGAAACTCG+CGG + chr5_4:6155864-6155883 None:intergenic 25.0%
!! GTTTTCTTGAAATGTATCTT+TGG - chr5_4:6155928-6155947 Msa0832980:three_prime_UTR 25.0%
! GACATACAAAAGAAGATATT+AGG + chr5_4:6156071-6156090 None:intergenic 25.0%
! TTGAAAATGTACAACAAACA+TGG - chr5_4:6156135-6156154 Msa0832980:three_prime_UTR 25.0%
!! TTCATTAGATTTAGAGTATG+AGG - chr5_4:6156175-6156194 Msa0832980:three_prime_UTR 25.0%
!! TCATTAGATTTAGAGTATGA+GGG - chr5_4:6156176-6156195 Msa0832980:three_prime_UTR 25.0%
! ATGAACAGAATGATAAACTT+TGG + chr5_4:6156281-6156300 None:intergenic 25.0%
! TACTAAGAATTGTCAAATAG+TGG - chr5_4:6156506-6156525 Msa0832980:intron 25.0%
! AACTAGTCAGAAAAAATCAT+GGG + chr5_4:6156721-6156740 None:intergenic 25.0%
! TAACTAGTCAGAAAAAATCA+TGG + chr5_4:6156722-6156741 None:intergenic 25.0%
!!! TGCTCTAAAATTTTTCACTT+TGG - chr5_4:6156898-6156917 Msa0832980:intron 25.0%
!!! TCTAAAATTTTTCACTTTGG+AGG - chr5_4:6156901-6156920 Msa0832980:intron 25.0%
!! CTAAAATTTTTCACTTTGGA+GGG - chr5_4:6156902-6156921 Msa0832980:intron 25.0%
! AGTAATGTGAATGTAAGAAA+TGG - chr5_4:6157089-6157108 Msa0832980:CDS 25.0%
! GTAATGTGAATGTAAGAAAT+GGG - chr5_4:6157090-6157109 Msa0832980:CDS 25.0%
! CAGAACTTCAAAATTAATGA+TGG + chr5_4:6157331-6157350 None:intergenic 25.0%
! CTAATTCATATACGAAAACA+TGG + chr5_4:6157508-6157527 None:intergenic 25.0%
!!! TTGTATGTCATTTTACATAC+AGG + chr5_4:6157593-6157612 None:intergenic 25.0%
! TTCTTTATGTTTCGATCAAT+TGG - chr5_4:6157966-6157985 Msa0832980:CDS 25.0%
! TGATTATTCAAAAGATCACT+TGG + chr5_4:6158029-6158048 None:intergenic 25.0%
!! GGAAAACAAAGATAACATTT+TGG + chr5_4:6158052-6158071 None:intergenic 25.0%
! AACTCTACCAAAAAATAATC+CGG - chr5_4:6158235-6158254 Msa0832980:CDS 25.0%
!! ACAGAAACACAATATTTTTC+AGG + chr5_4:6158845-6158864 None:intergenic 25.0%
! TTCATGATCTATAGATGTAA+GGG + chr5_4:6158924-6158943 None:intergenic 25.0%
! TTTCATGATCTATAGATGTA+AGG + chr5_4:6158925-6158944 None:intergenic 25.0%
!!! TAAACCTTCAATGTTTTTGT+AGG - chr5_4:6159518-6159537 Msa0832980:intron 25.0%
! AAATGATGAAAATGAGATGT+TGG + chr5_4:6159632-6159651 None:intergenic 25.0%
!! AACATCTCATTTTCATCATT+TGG - chr5_4:6159631-6159650 Msa0832980:CDS 25.0%
!! TATTTTTCCCAACGATAAAA+AGG + chr5_4:6159698-6159717 None:intergenic 25.0%
! TGACATAAGTTAAAAAAGTC+TGG + chr5_4:6159889-6159908 None:intergenic 25.0%
! AAATTTAAACTTTGCATGCT+TGG - chr5_4:6160002-6160021 Msa0832980:intron 25.0%
!!! ATGTTTGGACTTCTTTTTTA+CGG + chr5_4:6160576-6160595 None:intergenic 25.0%
!! TTGCAAAACAATTTTTACCT+GGG + chr5_4:6160813-6160832 None:intergenic 25.0%
! TTAGTGAGATCTTTATGATT+AGG - chr5_4:6160953-6160972 Msa0832980:intron 25.0%
! TAAACTTCAAATATAACGAG+AGG + chr5_4:6161034-6161053 None:intergenic 25.0%
!!! ATTTTGGGATACAAAAGTTA+TGG + chr5_4:6161216-6161235 None:intergenic 25.0%
! CAAACAAAATATCAAGTGTA+GGG + chr5_4:6161329-6161348 None:intergenic 25.0%
!!! AATTTTGGTTGAAATTTGAG+AGG + chr5_4:6161359-6161378 None:intergenic 25.0%
!! TGGATGGTATTAAAATTTTC+AGG - chr5_4:6161567-6161586 Msa0832980:five_prime_UTR 25.0%
GAAATTGAAGAAATAGTGAG+AGG - chr5_4:6155069-6155088 Msa0832980:three_prime_UTR 30.0%
AATTGAAGAAATAGTGAGAG+GGG - chr5_4:6155071-6155090 Msa0832980:three_prime_UTR 30.0%
TAGTATCAATTGTTACGGAA+TGG + chr5_4:6155168-6155187 None:intergenic 30.0%
! TGGATTTTCCATTTCCTAAT+TGG - chr5_4:6155226-6155245 Msa0832980:three_prime_UTR 30.0%
GAAATGAAATGAAAAGAGTG+TGG + chr5_4:6155257-6155276 None:intergenic 30.0%
! TGAAGAAAGTCTTTGATGAT+TGG + chr5_4:6155479-6155498 None:intergenic 30.0%
ACCAAAATCATTCAGTTTCT+TGG - chr5_4:6155503-6155522 Msa0832980:three_prime_UTR 30.0%
! ACCAAGAAACTGAATGATTT+TGG + chr5_4:6155507-6155526 None:intergenic 30.0%
TTGGAAATGTACAACAAACA+CGG - chr5_4:6155947-6155966 Msa0832980:three_prime_UTR 30.0%
ACAAAATAGCAACTAATGTG+TGG + chr5_4:6156098-6156117 None:intergenic 30.0%
TCATGTTTCTTGAACAGAAT+TGG - chr5_4:6156297-6156316 Msa0832980:intron 30.0%
TCGACTAATAAGTTCAAAAC+GGG + chr5_4:6156328-6156347 None:intergenic 30.0%
GTCGACTAATAAGTTCAAAA+CGG + chr5_4:6156329-6156348 None:intergenic 30.0%
AATGCTTATTGATGCATCTT+TGG + chr5_4:6156374-6156393 None:intergenic 30.0%
! AGATGCATCAATAAGCATTT+TGG - chr5_4:6156375-6156394 Msa0832980:CDS 30.0%
! GATGCATCAATAAGCATTTT+GGG - chr5_4:6156376-6156395 Msa0832980:CDS 30.0%
! ATGCATCAATAAGCATTTTG+GGG - chr5_4:6156377-6156396 Msa0832980:CDS 30.0%
GATTGTCAACATTAGTACTA+AGG - chr5_4:6156586-6156605 Msa0832980:intron 30.0%
!!! TATTTTTGGAGTCATCTAGT+GGG + chr5_4:6156653-6156672 None:intergenic 30.0%
!!! ATATTTTTGGAGTCATCTAG+TGG + chr5_4:6156654-6156673 None:intergenic 30.0%
TGTTTATATTGCATTGTTGC+AGG - chr5_4:6156960-6156979 Msa0832980:intron 30.0%
! AGAAATGGGTTTGTAATCAT+TGG - chr5_4:6157104-6157123 Msa0832980:intron 30.0%
TAGATTTACATCAATTCCAG+TGG + chr5_4:6157260-6157279 None:intergenic 30.0%
! AATCTAAAATTTACGAGGTC+AGG - chr5_4:6157274-6157293 Msa0832980:CDS 30.0%
! ATCTAAAATTTACGAGGTCA+GGG - chr5_4:6157275-6157294 Msa0832980:CDS 30.0%
AATGTCCAGCAAATCAAATA+TGG + chr5_4:6157410-6157429 None:intergenic 30.0%
ATTAGAACTTGTGGGAAAAT+TGG + chr5_4:6157557-6157576 None:intergenic 30.0%
! TTCAGTGAATTCCAGAATTT+TGG - chr5_4:6157657-6157676 Msa0832980:CDS 30.0%
AATTATGAATGACGTGTTAG+TGG - chr5_4:6157885-6157904 Msa0832980:CDS 30.0%
AAGGAGGCTAGATTAATTTA+CGG + chr5_4:6157927-6157946 None:intergenic 30.0%
AGAAATCACCAAAACCAATA+CGG + chr5_4:6157950-6157969 None:intergenic 30.0%
!! TTTCGATCAATTGGTTTGTA+AGG - chr5_4:6157975-6157994 Msa0832980:CDS 30.0%
!!! TCTTCTTCCGGATTATTTTT+TGG + chr5_4:6158245-6158264 None:intergenic 30.0%
CAAAAATATGTGTGACAAAC+AGG - chr5_4:6158517-6158536 Msa0832980:intron 30.0%
TACATCTTCTACATCTACAT+TGG - chr5_4:6158664-6158683 Msa0832980:intron 30.0%
ACATCTTCTACATCTACATT+GGG - chr5_4:6158665-6158684 Msa0832980:intron 30.0%
ACAGCATCATTCTTAAAGAA+CGG + chr5_4:6158704-6158723 None:intergenic 30.0%
TTTAAGAATGATGCTGTAAG+TGG - chr5_4:6158707-6158726 Msa0832980:intron 30.0%
! TTTTGTTCAGTAGATTCTTC+AGG + chr5_4:6158758-6158777 None:intergenic 30.0%
!!! ATATTTTTCAGGAGAATGGA+TGG + chr5_4:6158834-6158853 None:intergenic 30.0%
!!! CACAATATTTTTCAGGAGAA+TGG + chr5_4:6158838-6158857 None:intergenic 30.0%
!! GGAAATGGATTAGATATGTA+TGG - chr5_4:6159267-6159286 Msa0832980:intron 30.0%
!!! TTTATTGGTTTTAGGAGAAC+TGG - chr5_4:6159350-6159369 Msa0832980:intron 30.0%
!! TTCAAGAAATTTTGACCAAC+AGG + chr5_4:6159439-6159458 None:intergenic 30.0%
AAAGCCTACAAAAACATTGA+AGG + chr5_4:6159525-6159544 None:intergenic 30.0%
AACGATAAAAAGGAGTTGTT+GGG + chr5_4:6159688-6159707 None:intergenic 30.0%
! AACAACTCCTTTTTATCGTT+GGG - chr5_4:6159688-6159707 Msa0832980:intron 30.0%
GAATAGAAGGGAATAGATTT+AGG + chr5_4:6159759-6159778 None:intergenic 30.0%
TTTCCTTTCTATGTTGAATC+TGG - chr5_4:6159932-6159951 Msa0832980:intron 30.0%
! TTTTGATGTACTCATCTTTC+AGG - chr5_4:6160165-6160184 Msa0832980:intron 30.0%
GTTTATGACTGGTAATTTCA+AGG - chr5_4:6160204-6160223 Msa0832980:intron 30.0%
TGGTAATTTCAAGGAATTCA+AGG - chr5_4:6160213-6160232 Msa0832980:intron 30.0%
! AAGTTAACTTGACATGTTTC+AGG - chr5_4:6160360-6160379 Msa0832980:intron 30.0%
TATCATTAAGGATGCTTATC+AGG + chr5_4:6160511-6160530 None:intergenic 30.0%
!!! TGTTTGGACTTCTTTTTTAC+GGG + chr5_4:6160575-6160594 None:intergenic 30.0%
! GTTGACTTTAACTTCAGTTA+TGG - chr5_4:6160619-6160638 Msa0832980:intron 30.0%
! TGCAAAACAATTTTTACCTG+GGG + chr5_4:6160812-6160831 None:intergenic 30.0%
! GTTGCAAAACAATTTTTACC+TGG + chr5_4:6160814-6160833 None:intergenic 30.0%
! GTTCATTATCTGCAATGTTT+TGG - chr5_4:6160864-6160883 Msa0832980:intron 30.0%
CTTTAAACATGATCTCTCTA+TGG + chr5_4:6160933-6160952 None:intergenic 30.0%
!!! GAAGCTTGTTTTATAATTGG+TGG - chr5_4:6161190-6161209 Msa0832980:CDS 30.0%
CCAAACAAAATATCAAGTGT+AGG + chr5_4:6161330-6161349 None:intergenic 30.0%
! CCTACACTTGATATTTTGTT+TGG - chr5_4:6161327-6161346 Msa0832980:five_prime_UTR 30.0%
TAAAAAGTCAGAGTGATGTA+TGG - chr5_4:6161496-6161515 Msa0832980:five_prime_UTR 30.0%
! AAGGATTTGAACATTTTGGA+AGG - chr5_4:6161594-6161613 Msa0832980:five_prime_UTR 30.0%
!!! TTATCGTTTTGAAGGACGAT+CGG + chr5_4:6155539-6155558 None:intergenic 35.0%
ATCGTCCTTCAAAACGATAA+TGG - chr5_4:6155539-6155558 Msa0832980:three_prime_UTR 35.0%
! AAGGTCCATTATCGTTTTGA+AGG + chr5_4:6155547-6155566 None:intergenic 35.0%
GAATAATGAAAGATGGAGAG+AGG + chr5_4:6155598-6155617 None:intergenic 35.0%
CAAAACTCGCAGAATTAAAC+TGG + chr5_4:6156017-6156036 None:intergenic 35.0%
GAAGTAGTGTTGTCAAATAG+CGG - chr5_4:6156428-6156447 Msa0832980:CDS 35.0%
TAGTACTAAATAGCGCATCA+TGG + chr5_4:6156491-6156510 None:intergenic 35.0%
AGTACTAATGTTGACAATCG+TGG + chr5_4:6156585-6156604 None:intergenic 35.0%
ATACCTCACTAGATACGAAA+AGG + chr5_4:6156752-6156771 None:intergenic 35.0%
TTAGGTTTGAGCTCAGATAT+TGG - chr5_4:6157008-6157027 Msa0832980:intron 35.0%
CTGCAATTGATACGTAACTT+TGG + chr5_4:6157355-6157374 None:intergenic 35.0%
AAATCAAATATGGCACACTC+TGG + chr5_4:6157400-6157419 None:intergenic 35.0%
AGGTTACTAGTCCAAAATTC+TGG + chr5_4:6157671-6157690 None:intergenic 35.0%
!!! ATTTTGGACTAGTAACCTCT+TGG - chr5_4:6157673-6157692 Msa0832980:CDS 35.0%
GCATGAAATGACTAAAAGAG+AGG + chr5_4:6157721-6157740 None:intergenic 35.0%
! GGTAGGATTTGATTTCAGAA+TGG - chr5_4:6157771-6157790 Msa0832980:CDS 35.0%
AGGAGGCTAGATTAATTTAC+GGG + chr5_4:6157926-6157945 None:intergenic 35.0%
! TTGTTTTCCTTCAACCATGA+AGG - chr5_4:6158063-6158082 Msa0832980:CDS 35.0%
! TGTTTTCCTTCAACCATGAA+GGG - chr5_4:6158064-6158083 Msa0832980:CDS 35.0%
AATAAACCCTTCATGGTTGA+AGG + chr5_4:6158073-6158092 None:intergenic 35.0%
AAGTCCTATAATGCCCTTAT+GGG - chr5_4:6158179-6158198 Msa0832980:CDS 35.0%
! AGCTTGTTTCTCTTGAAACA+CGG - chr5_4:6158204-6158223 Msa0832980:CDS 35.0%
TCAACACAATCTTCTTCTTC+CGG + chr5_4:6158257-6158276 None:intergenic 35.0%
! TCTTCAAGATCACCTTTTCT+TGG + chr5_4:6158380-6158399 None:intergenic 35.0%
ATCAACTTCAGACATCTTCA+AGG + chr5_4:6158423-6158442 None:intergenic 35.0%
TTAATTAGTGATCCCATTGC+AGG - chr5_4:6158452-6158471 Msa0832980:CDS 35.0%
ATAGTCTTTACTAGAAGCAG+TGG + chr5_4:6158636-6158655 None:intergenic 35.0%
CATCTTCTACATCTACATTG+GGG - chr5_4:6158666-6158685 Msa0832980:intron 35.0%
ATCTTCTACATCTACATTGG+GGG - chr5_4:6158667-6158686 Msa0832980:intron 35.0%
ATCTACTGAACAAAACGATG+TGG - chr5_4:6158763-6158782 Msa0832980:intron 35.0%
ATGATCTATAGATGTAAGGG+AGG + chr5_4:6158921-6158940 None:intergenic 35.0%
GAAACTTCAGATGAATCTCA+AGG - chr5_4:6158941-6158960 Msa0832980:intron 35.0%
TTTCATCAAACTGATGCTTC+AGG - chr5_4:6159031-6159050 Msa0832980:intron 35.0%
TGTGTGTTGGATACAAAAAC+TGG - chr5_4:6159106-6159125 Msa0832980:intron 35.0%
AATCGTGAACCTGTTTATGA+AGG - chr5_4:6159139-6159158 Msa0832980:intron 35.0%
ATCGTGAACCTGTTTATGAA+GGG - chr5_4:6159140-6159159 Msa0832980:intron 35.0%
GAAGAAATTACTCCAGAACA+AGG - chr5_4:6159226-6159245 Msa0832980:CDS 35.0%
!! ATTTTGACCAACAGGACAAT+AGG + chr5_4:6159431-6159450 None:intergenic 35.0%
! TGGTGCTGAAATGATTGTTT+CGG + chr5_4:6159594-6159613 None:intergenic 35.0%
TCATTTCAGCACCATGTTTA+AGG - chr5_4:6159600-6159619 Msa0832980:CDS 35.0%
ACGATAAAAAGGAGTTGTTG+GGG + chr5_4:6159687-6159706 None:intergenic 35.0%
CAACGATAAAAAGGAGTTGT+TGG + chr5_4:6159689-6159708 None:intergenic 35.0%
! CAACAACTCCTTTTTATCGT+TGG - chr5_4:6159687-6159706 Msa0832980:intron 35.0%
GGTGATACATTGTTTATGAC+TGG - chr5_4:6160193-6160212 Msa0832980:intron 35.0%
CATAACATTATTCTCATCCC+AGG + chr5_4:6160263-6160282 None:intergenic 35.0%
! TCTCAGTAAATGCTATTTGC+AGG - chr5_4:6161068-6161087 Msa0832980:intron 35.0%
TTGTCTTTAGATTTCGCATC+AGG + chr5_4:6161135-6161154 None:intergenic 35.0%
TATCCCAAAATTACAGCAAC+TGG - chr5_4:6161225-6161244 Msa0832980:CDS 35.0%
! TGACCAGTTGCTGTAATTTT+GGG + chr5_4:6161231-6161250 None:intergenic 35.0%
! TTGACCAGTTGCTGTAATTT+TGG + chr5_4:6161232-6161251 None:intergenic 35.0%
AAGTAAATAGTGTACCACAG+TGG - chr5_4:6161271-6161290 Msa0832980:CDS 35.0%
GGTTGAAATTTGAGAGGTAA+AGG + chr5_4:6161353-6161372 None:intergenic 35.0%
ACCAAAATTTCTGTGAGCTT+CGG - chr5_4:6161370-6161389 Msa0832980:five_prime_UTR 35.0%
AATTATCAAAGTGTAGGGCT+GGG + chr5_4:6161441-6161460 None:intergenic 35.0%
AAATTATCAAAGTGTAGGGC+TGG + chr5_4:6161442-6161461 None:intergenic 35.0%
CTTCAATTTCATCTGTGGTG+TGG + chr5_4:6155059-6155078 None:intergenic 40.0%
! GAAATGAAAAGAGTGTGGTG+TGG + chr5_4:6155252-6155271 None:intergenic 40.0%
AGATCGTGATGTTGATCTTG+AGG + chr5_4:6155416-6155435 None:intergenic 40.0%
CAGTAACTAACGAGTAGCAT+TGG + chr5_4:6155889-6155908 None:intergenic 40.0%
TCGTGGATCGCAGAAAATAT+TGG + chr5_4:6156568-6156587 None:intergenic 40.0%
! TCTCCTTTTCGTATCTAGTG+AGG - chr5_4:6156746-6156765 Msa0832980:intron 40.0%
TATCTGAGCTCAAACCTAAC+TGG + chr5_4:6157007-6157026 None:intergenic 40.0%
AGATATTGGTGAAGTCTCAC+AGG - chr5_4:6157022-6157041 Msa0832980:intron 40.0%
! ACAGGAGAAGTTGCTTTCAT+TGG - chr5_4:6157040-6157059 Msa0832980:CDS 40.0%
AGGGAGCAAATCAATTGCAT+CGG + chr5_4:6157230-6157249 None:intergenic 40.0%
!! ATGCAATTGATTTGCTCCCT+AGG - chr5_4:6157230-6157249 Msa0832980:intron 40.0%
!! GTGTGCCATATTTGATTTGC+TGG - chr5_4:6157402-6157421 Msa0832980:intron 40.0%
CTGGACATTCCTTTGTATCA+TGG - chr5_4:6157421-6157440 Msa0832980:CDS 40.0%
ACATTCCTTTGTATCATGGC+TGG - chr5_4:6157425-6157444 Msa0832980:CDS 40.0%
ACTATCCAGCCATGATACAA+AGG + chr5_4:6157433-6157452 None:intergenic 40.0%
ACTTGTGGGAAAATTGGCAA+GGG + chr5_4:6157551-6157570 None:intergenic 40.0%
AACTTGTGGGAAAATTGGCA+AGG + chr5_4:6157552-6157571 None:intergenic 40.0%
TAGGGCACATTAGAACTTGT+GGG + chr5_4:6157565-6157584 None:intergenic 40.0%
TTAGGGCACATTAGAACTTG+TGG + chr5_4:6157566-6157585 None:intergenic 40.0%
ACTAGTAACCTCTTGGTCAT+AGG - chr5_4:6157680-6157699 Msa0832980:CDS 40.0%
!! GCATCCATTTTGATGTTGCT+AGG - chr5_4:6157750-6157769 Msa0832980:CDS 40.0%
CCTACCTAGCAACATCAAAA+TGG + chr5_4:6157757-6157776 None:intergenic 40.0%
!! CCATTTTGATGTTGCTAGGT+AGG - chr5_4:6157754-6157773 Msa0832980:CDS 40.0%
TTTACGGGTATCACACAAAG+AGG + chr5_4:6157911-6157930 None:intergenic 40.0%
ATCACCAAAACCAATACGGA+AGG + chr5_4:6157946-6157965 None:intergenic 40.0%
CATGATACTGCAACTGCAAT+TGG - chr5_4:6158152-6158171 Msa0832980:CDS 40.0%
GAAGTCCTATAATGCCCTTA+TGG - chr5_4:6158178-6158197 Msa0832980:CDS 40.0%
AGAAACAAGCTCTCCCATAA+GGG + chr5_4:6158195-6158214 None:intergenic 40.0%
!!! GTTTTAGAAAGACTGGGAGA+AGG + chr5_4:6158314-6158333 None:intergenic 40.0%
!!! GACCTGGTTTTAGAAAGACT+GGG + chr5_4:6158320-6158339 None:intergenic 40.0%
!!! AGACCTGGTTTTAGAAAGAC+TGG + chr5_4:6158321-6158340 None:intergenic 40.0%
CAGGACATGCAAATGGTAAT+GGG - chr5_4:6158471-6158490 Msa0832980:CDS 40.0%
! AGGACATGCAAATGGTAATG+GGG - chr5_4:6158472-6158491 Msa0832980:CDS 40.0%
! AATGGGGGAGAAGTTTCTTT+TGG - chr5_4:6158488-6158507 Msa0832980:CDS 40.0%
! GGGAGAAGTTTCTTTTGGTA+TGG - chr5_4:6158493-6158512 Msa0832980:intron 40.0%
AGTGGAATCATCAGGTATGA+AGG + chr5_4:6158618-6158637 None:intergenic 40.0%
CTTCCATCAATCAGCTTCTA+TGG - chr5_4:6158730-6158749 Msa0832980:intron 40.0%
GTTCCATAGAAGCTGATTGA+TGG + chr5_4:6158736-6158755 None:intergenic 40.0%
ATCTGCAAGCCATACAGATT+CGG - chr5_4:6158991-6159010 Msa0832980:intron 40.0%
ACATTTCCTTCAACCGTTGA+TGG - chr5_4:6159055-6159074 Msa0832980:intron 40.0%
CATTTCCTTCAACCGTTGAT+GGG - chr5_4:6159056-6159075 Msa0832980:intron 40.0%
CATTCCTCTCCTTCATACAT+GGG + chr5_4:6159088-6159107 None:intergenic 40.0%
ACATTCCTCTCCTTCATACA+TGG + chr5_4:6159089-6159108 None:intergenic 40.0%
TCGTGAACCTGTTTATGAAG+GGG - chr5_4:6159141-6159160 Msa0832980:intron 40.0%
GTAATTTCTTCCTTAGCCCT+TGG + chr5_4:6159217-6159236 None:intergenic 40.0%
!! GTGGTGCTATATCTTGGAAA+TGG - chr5_4:6159252-6159271 Msa0832980:CDS 40.0%
! GCCAGTCAGTTGACATTTTA+CGG - chr5_4:6159396-6159415 Msa0832980:CDS 40.0%
! CCAGTCAGTTGACATTTTAC+GGG - chr5_4:6159397-6159416 Msa0832980:CDS 40.0%
ATGTTGACCTATTGTCCTGT+TGG - chr5_4:6159421-6159440 Msa0832980:CDS 40.0%
! AGGCTTTTCTGTCTTCAAGA+TGG - chr5_4:6159538-6159557 Msa0832980:intron 40.0%
TCCCTTCTATTCACAGTTTG+AGG - chr5_4:6159767-6159786 Msa0832980:intron 40.0%
CCCTCAAACTGTGAATAGAA+GGG + chr5_4:6159771-6159790 None:intergenic 40.0%
CCCTTCTATTCACAGTTTGA+GGG - chr5_4:6159768-6159787 Msa0832980:intron 40.0%
ACCCTCAAACTGTGAATAGA+AGG + chr5_4:6159772-6159791 None:intergenic 40.0%
! TATCTTCTAGCTACAGACCA+AGG - chr5_4:6159798-6159817 Msa0832980:intron 40.0%
CTACATAAATCAGCCTGATC+TGG - chr5_4:6159821-6159840 Msa0832980:intron 40.0%
TAAATCAGCCTGATCTGGTT+TGG - chr5_4:6159826-6159845 Msa0832980:intron 40.0%
! AAATCAGCCTGATCTGGTTT+GGG - chr5_4:6159827-6159846 Msa0832980:intron 40.0%
! AGTTTTTCCCAAACCAGATC+AGG + chr5_4:6159837-6159856 None:intergenic 40.0%
GGTTTGGGAAAAACTGAATG+AGG - chr5_4:6159842-6159861 Msa0832980:intron 40.0%
CCTTTCTATGTTGAATCTGG+CGG - chr5_4:6159935-6159954 Msa0832980:intron 40.0%
CTTTCTATGTTGAATCTGGC+GGG - chr5_4:6159936-6159955 Msa0832980:intron 40.0%
! GTACTCATCTTTCAGGTCAA+CGG - chr5_4:6160172-6160191 Msa0832980:intron 40.0%
CCATGAAAATAACACCACCT+GGG - chr5_4:6160243-6160262 Msa0832980:intron 40.0%
AACATTATTCTCATCCCAGG+TGG + chr5_4:6160260-6160279 None:intergenic 40.0%
GAAAATACGTACAGCAGTGT+TGG + chr5_4:6160287-6160306 None:intergenic 40.0%
! CAAGCGCACTGATATCATTA+AGG + chr5_4:6160523-6160542 None:intergenic 40.0%
CTTAATGATATCAGTGCGCT+TGG - chr5_4:6160521-6160540 Msa0832980:intron 40.0%
!! CTCAAACTCTTGTTGTTGCA+AGG + chr5_4:6160723-6160742 None:intergenic 40.0%
CAACAAACACCATCTGTTAG+TGG - chr5_4:6160764-6160783 Msa0832980:intron 40.0%
TATGCATCCCTGTTATCTGT+TGG - chr5_4:6160892-6160911 Msa0832980:intron 40.0%
TGAGAGACCAACAGATAACA+GGG + chr5_4:6160902-6160921 None:intergenic 40.0%
ATGAGAGACCAACAGATAAC+AGG + chr5_4:6160903-6160922 None:intergenic 40.0%
TTAGATTTCGCATCAGGCTT+GGG + chr5_4:6161129-6161148 None:intergenic 40.0%
TTTAGATTTCGCATCAGGCT+TGG + chr5_4:6161130-6161149 None:intergenic 40.0%
TATCAAGTGTAGGGAAGTAG+AGG + chr5_4:6161320-6161339 None:intergenic 40.0%
! TAGTTAGACGTTGACTGACA+GGG - chr5_4:6161537-6161556 Msa0832980:five_prime_UTR 40.0%
TGCATCTGAGTAGAGAGTAG+AGG - chr5_4:6155107-6155126 Msa0832980:three_prime_UTR 45.0%
ATCTGAGTAGAGAGTAGAGG+CGG - chr5_4:6155110-6155129 Msa0832980:three_prime_UTR 45.0%
CAAAGAAACTTCACCACACG+CGG - chr5_4:6155139-6155158 Msa0832980:three_prime_UTR 45.0%
TGGTGTGGCCAATTAGGAAA+TGG + chr5_4:6155237-6155256 None:intergenic 45.0%
TGATGTTGATCTTGAGGAGG+AGG + chr5_4:6155410-6155429 None:intergenic 45.0%
TCGTGATGTTGATCTTGAGG+AGG + chr5_4:6155413-6155432 None:intergenic 45.0%
AAATAGCGGCTATAGCGTAG+TGG - chr5_4:6156442-6156461 Msa0832980:CDS 45.0%
AGCGCATCATGGAATGATAG+AGG + chr5_4:6156480-6156499 None:intergenic 45.0%
TCTATAGCACTGTAGCGTAG+TGG - chr5_4:6156530-6156549 Msa0832980:intron 45.0%
TCATCTAGTGGGATAAGGCT+TGG + chr5_4:6156642-6156661 None:intergenic 45.0%
TGGAGTCATCTAGTGGGATA+AGG + chr5_4:6156647-6156666 None:intergenic 45.0%
CTTCTGCTACGAAACCAGTT+AGG - chr5_4:6156990-6157009 Msa0832980:intron 45.0%
GGCTTACAGAACAAAGATGC+AGG - chr5_4:6157175-6157194 Msa0832980:intron 45.0%
TCACTTTGCCTATGACCAAG+AGG + chr5_4:6157691-6157710 None:intergenic 45.0%
AATCTAGCCTCCTTCCGTAT+TGG - chr5_4:6157933-6157952 Msa0832980:CDS 45.0%
ACCAAAACCAATACGGAAGG+AGG + chr5_4:6157943-6157962 None:intergenic 45.0%
TCTTCATGTGCTTGTGAACC+AGG - chr5_4:6158127-6158146 Msa0832980:CDS 45.0%
CAGTTGCAGTATCATGATCC+TGG + chr5_4:6158148-6158167 None:intergenic 45.0%
!! CTCTCCCATAAGGGCATTAT+AGG + chr5_4:6158186-6158205 None:intergenic 45.0%
GAGAAACAAGCTCTCCCATA+AGG + chr5_4:6158196-6158215 None:intergenic 45.0%
!! CTCCCAGTCTTTCTAAAACC+AGG - chr5_4:6158315-6158334 Msa0832980:CDS 45.0%
CGGAGAATCATCAAAAGACC+TGG + chr5_4:6158336-6158355 None:intergenic 45.0%
TCTGATCAGGCACCAAGAAA+AGG - chr5_4:6158365-6158384 Msa0832980:CDS 45.0%
CCATTTGCATGTCCTGCAAT+GGG + chr5_4:6158467-6158486 None:intergenic 45.0%
ACCATTTGCATGTCCTGCAA+TGG + chr5_4:6158468-6158487 None:intergenic 45.0%
GCAGGACATGCAAATGGTAA+TGG - chr5_4:6158470-6158489 Msa0832980:CDS 45.0%
!! GGACATGCAAATGGTAATGG+GGG - chr5_4:6158473-6158492 Msa0832980:CDS 45.0%
!! GTTGACTTGGGAAAGAACAC+TGG - chr5_4:6158560-6158579 Msa0832980:intron 45.0%
CTAGAAGCAGTGGAATCATC+AGG + chr5_4:6158626-6158645 None:intergenic 45.0%
!! GTTTTTGAGAGCTGTGCAGA+TGG - chr5_4:6158863-6158882 Msa0832980:intron 45.0%
TCTCAAGGACTTGATGCAAC+AGG - chr5_4:6158956-6158975 Msa0832980:intron 45.0%
! GTATGGCTTGCAGATAAGCA+TGG + chr5_4:6158986-6159005 None:intergenic 45.0%
TGAAGGAGAGGAATGTGTGT+TGG - chr5_4:6159093-6159112 Msa0832980:intron 45.0%
TGAACCTGTTTATGAAGGGG+AGG - chr5_4:6159144-6159163 Msa0832980:intron 45.0%
!! GGCATCTAAGGTGCTTTTGT+CGG + chr5_4:6159188-6159207 None:intergenic 45.0%
CTTAGATGCCCTTGATCCAA+GGG - chr5_4:6159198-6159217 Msa0832980:CDS 45.0%
TTCCTTAGCCCTTGGATCAA+GGG + chr5_4:6159209-6159228 None:intergenic 45.0%
TTACTCCAGAACAAGGTCAG+TGG - chr5_4:6159233-6159252 Msa0832980:CDS 45.0%
!! AGGTCAGTGGTGCTATATCT+TGG - chr5_4:6159246-6159265 Msa0832980:CDS 45.0%
CCCGTAAAATGTCAACTGAC+TGG + chr5_4:6159400-6159419 None:intergenic 45.0%
GTTGGAGCTCACCTTAAACA+TGG + chr5_4:6159614-6159633 None:intergenic 45.0%
! CAGGCTGATTTATGTAGCCT+TGG + chr5_4:6159818-6159837 None:intergenic 45.0%
CCGCCAGATTCAACATAGAA+AGG + chr5_4:6159938-6159957 None:intergenic 45.0%
! GCTTGGTGATTTGAGCTTCT+TGG - chr5_4:6160019-6160038 Msa0832980:intron 45.0%
GCCATGAAAATAACACCACC+TGG - chr5_4:6160242-6160261 Msa0832980:intron 45.0%
!!! CCCAGGTGGTGTTATTTTCA+TGG + chr5_4:6160246-6160265 None:intergenic 45.0%
CGCTTGGATGAGCTAACTTT+GGG - chr5_4:6160537-6160556 Msa0832980:intron 45.0%
!! GTTTGTTGATTCTGTCGTGG+TGG + chr5_4:6160752-6160771 None:intergenic 45.0%
!! GGTGTTTGTTGATTCTGTCG+TGG + chr5_4:6160755-6160774 None:intergenic 45.0%
!! CTGGAAGTACCACTAACAGA+TGG + chr5_4:6160776-6160795 None:intergenic 45.0%
TGTTAGTGGTACTTCCAGAC+TGG - chr5_4:6160778-6160797 Msa0832980:intron 45.0%
! AATGCTATTTGCAGGTGCCA+AGG - chr5_4:6161076-6161095 Msa0832980:CDS 45.0%
AAATAGTGTACCACAGTGGC+AGG - chr5_4:6161275-6161294 Msa0832980:CDS 45.0%
! GCCGAAGCTCACAGAAATTT+TGG + chr5_4:6161374-6161393 None:intergenic 45.0%
ACAGCCAATCAACACAGAAC+GGG + chr5_4:6161396-6161415 None:intergenic 45.0%
CACAGCCAATCAACACAGAA+CGG + chr5_4:6161397-6161416 None:intergenic 45.0%
! CTAGTTAGACGTTGACTGAC+AGG - chr5_4:6161536-6161555 Msa0832980:five_prime_UTR 45.0%
AGAGTGTGGTGTGGCCAATT+AGG + chr5_4:6155243-6155262 None:intergenic 50.0%
CAAGAACGTGCACAACACCA+TGG - chr5_4:6155328-6155347 Msa0832980:three_prime_UTR 50.0%
TGTTGATCTTGAGGAGGAGG+AGG + chr5_4:6155407-6155426 None:intergenic 50.0%
!!! GTTTTGAAGGACGATCGGAG+TGG + chr5_4:6155534-6155553 None:intergenic 50.0%
TCCTCTCCTCGCTATCTGTT+AGG - chr5_4:6155568-6155587 Msa0832980:intron 50.0%
CCTCTCCTCGCTATCTGTTA+GGG - chr5_4:6155569-6155588 Msa0832980:intron 50.0%
GGAAACCCTAACAGATAGCG+AGG + chr5_4:6155577-6155596 None:intergenic 50.0%
! GCACTGTAGCGTAGTGGAAT+TGG - chr5_4:6156536-6156555 Msa0832980:intron 50.0%
CAATTCCAGTGGCAAGCCTA+GGG + chr5_4:6157249-6157268 None:intergenic 50.0%
TCAATTCCAGTGGCAAGCCT+AGG + chr5_4:6157250-6157269 None:intergenic 50.0%
TGGCTGGATAGTTGATCAGC+AGG - chr5_4:6157441-6157460 Msa0832980:CDS 50.0%
!!! GCCTCCTTCCGTATTGGTTT+TGG - chr5_4:6157939-6157958 Msa0832980:CDS 50.0%
!! TCCGCGTTCTGTTTCTGATC+AGG - chr5_4:6158352-6158371 Msa0832980:CDS 50.0%
GCCTGATCAGAAACAGAACG+CGG + chr5_4:6158356-6158375 None:intergenic 50.0%
CCCATTGCAGGACATGCAAA+TGG - chr5_4:6158464-6158483 Msa0832980:CDS 50.0%
!! AGGCTGTATCCGTCGATTCT+GGG - chr5_4:6158537-6158556 Msa0832980:intron 50.0%
CAAGTCAACCCCAGAATCGA+CGG + chr5_4:6158549-6158568 None:intergenic 50.0%
!! GTCGATTCTGGGGTTGACTT+GGG - chr5_4:6158548-6158567 Msa0832980:intron 50.0%
AGCTGTGCAGATGGCACTAT+GGG - chr5_4:6158872-6158891 Msa0832980:intron 50.0%
TCACTCCCATCAACGGTTGA+AGG + chr5_4:6159064-6159083 None:intergenic 50.0%
TGAGCCCATGTATGAAGGAG+AGG - chr5_4:6159081-6159100 Msa0832980:intron 50.0%
ACCTGTTTATGAAGGGGAGG+CGG - chr5_4:6159147-6159166 Msa0832980:intron 50.0%
!! CCTTGGATCAAGGGCATCTA+AGG + chr5_4:6159200-6159219 None:intergenic 50.0%
CCTTAGATGCCCTTGATCCA+AGG - chr5_4:6159197-6159216 Msa0832980:CDS 50.0%
CTTCCTTAGCCCTTGGATCA+AGG + chr5_4:6159210-6159229 None:intergenic 50.0%
TAGCACCACTGACCTTGTTC+TGG + chr5_4:6159241-6159260 None:intergenic 50.0%
ATGCGTTGCACTCTCTATGC+TGG + chr5_4:6160395-6160414 None:intergenic 50.0%
! ATAGAGAGTGCAACGCATGC+AGG - chr5_4:6160397-6160416 Msa0832980:intron 50.0%
GCGCTTGGATGAGCTAACTT+TGG - chr5_4:6160536-6160555 Msa0832980:intron 50.0%
AGAGGACTGTGGTCACAAGA+AGG + chr5_4:6161302-6161321 None:intergenic 50.0%
TGTAGGGAAGTAGAGGACTG+TGG + chr5_4:6161313-6161332 None:intergenic 50.0%
TACGGAATGGAATCCGCGTG+TGG + chr5_4:6155155-6155174 None:intergenic 55.0%
CGTGCACAACACCATGGACA+TGG - chr5_4:6155334-6155353 Msa0832980:three_prime_UTR 55.0%
GCACAACACCATGGACATGG+CGG - chr5_4:6155337-6155356 Msa0832980:three_prime_UTR 55.0%
! TGATGATGCCGCCATGTCCA+TGG + chr5_4:6155348-6155367 None:intergenic 55.0%
TGATCTTGAGGAGGAGGAGG+AGG + chr5_4:6155404-6155423 None:intergenic 55.0%
CAGATAGCGAGGAGAGGACA+AGG + chr5_4:6155566-6155585 None:intergenic 55.0%
CCCTAACAGATAGCGAGGAG+AGG + chr5_4:6155572-6155591 None:intergenic 55.0%
GCTGCAACAACTGCTGCTCT+TGG - chr5_4:6158284-6158303 Msa0832980:CDS 55.0%
!! CAGGCTGTATCCGTCGATTC+TGG - chr5_4:6158536-6158555 Msa0832980:intron 55.0%
!! GGCTGTATCCGTCGATTCTG+GGG - chr5_4:6158538-6158557 Msa0832980:intron 55.0%
!! CGTCGATTCTGGGGTTGACT+TGG - chr5_4:6158547-6158566 Msa0832980:intron 55.0%
GAGCTGTGCAGATGGCACTA+TGG - chr5_4:6158871-6158890 Msa0832980:intron 55.0%
GCTGTGCAGATGGCACTATG+GGG - chr5_4:6158873-6158892 Msa0832980:intron 55.0%
CTGTGCAGATGGCACTATGG+GGG - chr5_4:6158874-6158893 Msa0832980:intron 55.0%
TGTGCAGATGGCACTATGGG+GGG - chr5_4:6158875-6158894 Msa0832980:intron 55.0%
CATGGGCTCACTCCCATCAA+CGG + chr5_4:6159071-6159090 None:intergenic 55.0%
GGGAGTGAGCCCATGTATGA+AGG - chr5_4:6159076-6159095 Msa0832980:intron 55.0%
ACCGCCTCCCCTTCATAAAC+AGG + chr5_4:6159151-6159170 None:intergenic 55.0%
TGCCCTTGATCCAAGGGCTA+AGG - chr5_4:6159204-6159223 Msa0832980:CDS 55.0%
! GGTACTTCCAGACTGGTCAC+AGG - chr5_4:6160785-6160804 Msa0832980:intron 55.0%
GGATTCCTTCCTGTGCTCCT+TGG + chr5_4:6161096-6161115 None:intergenic 55.0%
TCAGGCTTGGGAGATGAAGG+TGG + chr5_4:6161117-6161136 None:intergenic 55.0%
GCATCAGGCTTGGGAGATGA+AGG + chr5_4:6161120-6161139 None:intergenic 55.0%
ACAAGAAGGACCTGCCACTG+TGG + chr5_4:6161288-6161307 None:intergenic 55.0%
! TCGGCCCGTTCTGTGTTGAT+TGG - chr5_4:6161389-6161408 Msa0832980:five_prime_UTR 55.0%
! TAGACGTTGACTGACAGGGC+AGG - chr5_4:6161541-6161560 Msa0832980:five_prime_UTR 55.0%
TTGACTGACAGGGCAGGAAG+TGG - chr5_4:6161547-6161566 Msa0832980:five_prime_UTR 55.0%
GGAGGAGGAGGTTCGTTCGT+TGG + chr5_4:6155383-6155402 None:intergenic 60.0%
TCTTGAGGAGGAGGAGGAGG+AGG + chr5_4:6155401-6155420 None:intergenic 60.0%
TTGCTCCCTAGGCTTGCCAC+TGG - chr5_4:6157241-6157260 Msa0832980:CDS 60.0%
! TTGCAGGTGCCAAGGAGCAC+AGG - chr5_4:6161084-6161103 Msa0832980:CDS 60.0%
! AGGTGCCAAGGAGCACAGGA+AGG - chr5_4:6161088-6161107 Msa0832980:CDS 60.0%
CTGACAGGGCAGGAAGTGGA+TGG - chr5_4:6161551-6161570 Msa0832980:five_prime_UTR 60.0%
TGAGGAGGAGGAGGAGGAGG+AGG + chr5_4:6155398-6155417 None:intergenic 65.0%
TGAAGGGGAGGCGGTGCTTC+AGG - chr5_4:6159156-6159175 Msa0832980:intron 65.0%
GGAGGCGGTGCTTCAGGAAC+AGG - chr5_4:6159162-6159181 Msa0832980:intron 65.0%
CTGGGGACCTGTGACCAGTC+TGG + chr5_4:6160795-6160814 None:intergenic 65.0%
! CAGACTGGTCACAGGTCCCC+AGG - chr5_4:6160793-6160812 Msa0832980:intron 65.0%
GGAGGAGGAGGAGGAGGAGG+AGG + chr5_4:6155392-6155411 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 6155015 6161643 6155015 ID=Msa0832980;Name=Msa0832980
chr5_4 mRNA 6155015 6161643 6155015 ID=Msa0832980-mRNA-1;Parent=Msa0832980;Name=Msa0832980-mRNA-1;_AED=0.05;_eAED=0.05;_QI=332|1|1|1|1|0.90|11|924|679
chr5_4 exon 6155015 6155568 6155015 ID=Msa0832980-mRNA-1:exon:2643;Parent=Msa0832980-mRNA-1
chr5_4 exon 6155844 6156276 6155844 ID=Msa0832980-mRNA-1:exon:2642;Parent=Msa0832980-mRNA-1
chr5_4 exon 6156364 6156471 6156364 ID=Msa0832980-mRNA-1:exon:2641;Parent=Msa0832980-mRNA-1
chr5_4 exon 6156795 6156875 6156795 ID=Msa0832980-mRNA-1:exon:2640;Parent=Msa0832980-mRNA-1
chr5_4 exon 6157037 6157118 6157037 ID=Msa0832980-mRNA-1:exon:2639;Parent=Msa0832980-mRNA-1
chr5_4 exon 6157240 6157294 6157240 ID=Msa0832980-mRNA-1:exon:2638;Parent=Msa0832980-mRNA-1
chr5_4 exon 6157411 6158509 6157411 ID=Msa0832980-mRNA-1:exon:2637;Parent=Msa0832980-mRNA-1
chr5_4 exon 6159196 6159283 6159196 ID=Msa0832980-mRNA-1:exon:2636;Parent=Msa0832980-mRNA-1
chr5_4 exon 6159368 6159474 6159368 ID=Msa0832980-mRNA-1:exon:2635;Parent=Msa0832980-mRNA-1
chr5_4 exon 6159558 6159676 6159558 ID=Msa0832980-mRNA-1:exon:2634;Parent=Msa0832980-mRNA-1
chr5_4 exon 6161074 6161643 6161074 ID=Msa0832980-mRNA-1:exon:2633;Parent=Msa0832980-mRNA-1
chr5_4 five_prime_UTR 6161312 6161643 6161312 ID=Msa0832980-mRNA-1:five_prime_utr;Parent=Msa0832980-mRNA-1
chr5_4 CDS 6161074 6161311 6161074 ID=Msa0832980-mRNA-1:cds;Parent=Msa0832980-mRNA-1
chr5_4 CDS 6159558 6159676 6159558 ID=Msa0832980-mRNA-1:cds;Parent=Msa0832980-mRNA-1
chr5_4 CDS 6159368 6159474 6159368 ID=Msa0832980-mRNA-1:cds;Parent=Msa0832980-mRNA-1
chr5_4 CDS 6159196 6159283 6159196 ID=Msa0832980-mRNA-1:cds;Parent=Msa0832980-mRNA-1
chr5_4 CDS 6157411 6158509 6157411 ID=Msa0832980-mRNA-1:cds;Parent=Msa0832980-mRNA-1
chr5_4 CDS 6157240 6157294 6157240 ID=Msa0832980-mRNA-1:cds;Parent=Msa0832980-mRNA-1
chr5_4 CDS 6157037 6157118 6157037 ID=Msa0832980-mRNA-1:cds;Parent=Msa0832980-mRNA-1
chr5_4 CDS 6156795 6156875 6156795 ID=Msa0832980-mRNA-1:cds;Parent=Msa0832980-mRNA-1
chr5_4 CDS 6156364 6156471 6156364 ID=Msa0832980-mRNA-1:cds;Parent=Msa0832980-mRNA-1
chr5_4 CDS 6156214 6156276 6156214 ID=Msa0832980-mRNA-1:cds;Parent=Msa0832980-mRNA-1
chr5_4 three_prime_UTR 6155844 6156213 6155844 ID=Msa0832980-mRNA-1:three_prime_utr;Parent=Msa0832980-mRNA-1
chr5_4 three_prime_UTR 6155015 6155568 6155015 ID=Msa0832980-mRNA-1:three_prime_utr;Parent=Msa0832980-mRNA-1
Gene Sequence

>Msa0832980

ATGGACATGGCGGCATCATCATCTTCATCTTCTCCAACGAACGAACCTCCTCCTCCTCCTCCTCCTCCTCAAGATCAACATCACGATCTTCAACATCAACTTCAACAAGAACAACAACAGCAATCTTCACCAATCATCAAAGACTTTCTTCACAAAACCAAAATCATTCAGTTTCTTGGTCGCACCACTCCGATCGTCCTTCAAAACGATAATGGACCTTGTCCTCTCCTCGCTATCTGTAACGTTCTTCTGCTACGAAACCAGTTAGGTTTGAGCTCAGATATTGGTGAAGTCTCACAGGAGAAGTTGCTTTCATTGGTTGCTGAGCGATTGCTTGATTCAAATAGTAATGTGAATAACAAAGATGCAGGCTATGTTGAAAATCAACAACAGAACATTGCCGATGCAATTGATTTGCTCCCTAGGCTTGCCACTGGAATTGATGTAAATCTAAAATTTACGAGAATAGATGATTTTGAATTCACTCCAGAGTGTGCCATATTTGATTTGCTGGACATTCCTTTGTATCATGGCTGGATAGTTGATCAGCAGGATCATGATACTGCAACTGCAATTGGATCGAAGTCCTATAATGCCCTTATGGGAGAGCTTGTTTCTCTTGAAACACGGAACATTGAAACTCTACCAAAAAATAATCCGGAAGAAGAAGATTGTGTTGATTTTGTTGCTGCAACAACTGCTGCTCTTGGAGTGCCTTCTCCCAGTCTTTCTAAAACCAGGTCTTTTGATGATTCTCCGCGTTCTGTTTCTGATCAGGCACCAAGAAAAGGTGATCTTGAAGAAGAAGAAGAGCTGTTGAGAGCCTTGAAGATGTCTGAAGTTGATTCTGTAGCTTTAATTAGTGATCCCATTGCAGGACATGCAAATGGTAATGGGGGAGAAGTTTCTTTTGGTATGGACAAAAATATGTGTGACAAACAGGCTGTATCCGTCGATTCTGGGGTTGACTTGGGAAAGAACACTGGTAAAGAAAGCAGTGACTTTCATGAATCAGAAACCTTCATACCTGATGATTCCACTGCTTCTAGTAAAGACTATAATGAACATACATCTTCTACATCTACATTGGGGGAAGCAGCTAATCCGTTCTTTAAGAATGATGCTGTAAGTGGCTTCCATCAATCAGCTTCTATGGAACCTGAAGAATCTACTGAACAAAACGATGTGGTTGAGAAGCATAAACTTGATGCATTAGTTCAGAATAAGAGTGCAGCCATCCATTCTCCTGAAAAATATTGTGTTTCTGTTTTTGAGAGCTGTGCAGATGGCACTATGGGGGGTGAAAAAGTTCACAATCAATCCTCCCTTACATCTATAGATCATGAAACTTCAGATGAATCTCAAGGACTTGATGCAACAGGAGTGCCATGCTTATCTGCAAGCCATACAGATTCGGATTCTTCTGGTATCAGATTTCATCAAACTGATGCTTCAGGAACATTTCCTTCAACCGTTGATGGGAGTGAGCCCATGTATGAAGGAGAGGAATGTGTGTTGGATACAAAAACTGGAAATTTTGAGAATCGTGAACCTGTTTATGAAGGGGAGGCGGTGCTTCAGGAACAGGCCGACAAAAGCACCTTAGATGCCCTTGATCCAAGGGCTAAGGAAGAAATTACTCCAGAACAAGGAGAACTGGTAAAGAGTTTTTTGAAGAATAATGCCAGTCAGTTGACATTTTACGGGCTTTTCTGTCTTCAAGATGGTCTTAAAGAGCGTGAGTTATGTGTTTTTTTCCGAAACAATCATTTCAGCACCATGTTTAAGTTTGAGGGTGAGCTCTATCTTCTAGCTACAGACCAAGGCTACATAAATCAGCCTGATCTGGTTTGGGAAAAACTGAATGAGGTCAACGGTGATACATTGTTTATGACTGGTAATTTCAAGGAATTCAAGGTAGAAAGCCATGAAAATAACACCACCTGGGATGAGAATAATGTTATGACCAACACTGCTGACTATCTTGCCAGCATAGAGAGTGCAACGCATGCAGGCTTAGATGTCAAGTTGAGTTTCTGA
Protein sequence

>Msa0832980

MDMAASSSSSSPTNEPPPPPPPPQDQHHDLQHQLQQEQQQQSSPIIKDFLHKTKIIQFLGRTTPIVLQNDNGPCPLLAICNVLLLRNQLGLSSDIGEVSQEKLLSLVAERLLDSNSNVNNKDAGYVENQQQNIADAIDLLPRLATGIDVNLKFTRIDDFEFTPECAIFDLLDIPLYHGWIVDQQDHDTATAIGSKSYNALMGELVSLETRNIETLPKNNPEEEDCVDFVAATTAALGVPSPSLSKTRSFDDSPRSVSDQAPRKGDLEEEEELLRALKMSEVDSVALISDPIAGHANGNGGEVSFGMDKNMCDKQAVSVDSGVDLGKNTGKESSDFHESETFIPDDSTASSKDYNEHTSSTSTLGEAANPFFKNDAVSGFHQSASMEPEESTEQNDVVEKHKLDALVQNKSAAIHSPEKYCVSVFESCADGTMGGEKVHNQSSLTSIDHETSDESQGLDATGVPCLSASHTDSDSSGIRFHQTDASGTFPSTVDGSEPMYEGEECVLDTKTGNFENREPVYEGEAVLQEQADKSTLDALDPRAKEEITPEQGELVKSFLKNNASQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKFEGELYLLATDQGYINQPDLVWEKLNEVNGDTLFMTGNFKEFKVESHENNTTWDENNVMTNTADYLASIESATHAGLDVKLSF*