Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133340 | XP_013442259.1 | 93.158 | 380 | 26 | 0 | 1 | 380 | 1 | 380 | 0.0 | 662 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133340 | sp|Q9T072|BH025_ARATH | 38.966 | 290 | 141 | 10 | 101 | 377 | 62 | 328 | 3.99e-50 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133340 | A0A072TFG1 | 93.158 | 380 | 26 | 0 | 1 | 380 | 1 | 380 | 0.0 | 662 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1133340 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1133340 | Msa1250420 | 0.903158 | 4.632316e-79 | -8.615850e-47 |
| Msa1133340 | Msa1250450 | 0.939695 | 8.249775e-100 | -8.615850e-47 |
| Msa1133340 | Msa1297380 | 0.971286 | 6.319912e-133 | -8.615850e-47 |
| Msa0511780 | Msa1133340 | 0.823013 | 1.740756e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133340 | MtrunA17_Chr4g0054581 | 93.158 | 380 | 26 | 0 | 1 | 380 | 1 | 380 | 0.0 | 662 |
| Msa1133340 | MtrunA17_Chr2g0307131 | 60.309 | 388 | 111 | 11 | 1 | 378 | 1 | 355 | 3.67e-135 | 390 |
| Msa1133340 | MtrunA17_Chr2g0307141 | 58.205 | 390 | 124 | 10 | 1 | 380 | 1 | 361 | 7.79e-126 | 367 |
| Msa1133340 | MtrunA17_Chr6g0468491 | 55.890 | 365 | 101 | 7 | 24 | 379 | 1 | 314 | 1.50e-122 | 356 |
| Msa1133340 | MtrunA17_Chr4g0033391 | 53.109 | 386 | 105 | 10 | 1 | 377 | 1 | 319 | 3.37e-115 | 338 |
| Msa1133340 | MtrunA17_Chr4g0054621 | 51.139 | 395 | 124 | 14 | 1 | 379 | 1 | 342 | 7.37e-110 | 325 |
| Msa1133340 | MtrunA17_Chr4g0033291 | 53.351 | 388 | 113 | 10 | 1 | 379 | 1 | 329 | 8.44e-107 | 317 |
| Msa1133340 | MtrunA17_Chr6g0468461 | 52.941 | 374 | 106 | 11 | 1 | 362 | 1 | 316 | 3.19e-106 | 316 |
| Msa1133340 | MtrunA17_Chr4g0033281 | 51.026 | 390 | 120 | 9 | 1 | 381 | 1 | 328 | 1.23e-104 | 311 |
| Msa1133340 | MtrunA17_Chr7g0225901 | 45.646 | 333 | 86 | 9 | 24 | 354 | 1 | 240 | 6.76e-73 | 228 |
| Msa1133340 | MtrunA17_Chr5g0400621 | 52.124 | 259 | 97 | 6 | 121 | 378 | 101 | 333 | 3.33e-68 | 218 |
| Msa1133340 | MtrunA17_Chr4g0002801 | 51.064 | 188 | 88 | 3 | 191 | 375 | 145 | 331 | 2.42e-55 | 185 |
| Msa1133340 | MtrunA17_Chr2g0280161 | 51.075 | 186 | 80 | 4 | 196 | 377 | 175 | 353 | 1.19e-54 | 184 |
| Msa1133340 | MtrunA17_Chr5g0400661 | 36.870 | 377 | 175 | 14 | 13 | 374 | 6 | 334 | 7.14e-54 | 181 |
| Msa1133340 | MtrunA17_Chr5g0400641 | 54.601 | 163 | 64 | 3 | 201 | 360 | 1 | 156 | 1.19e-49 | 164 |
| Msa1133340 | MtrunA17_Chr4g0002781 | 40.449 | 267 | 123 | 5 | 116 | 375 | 113 | 350 | 2.10e-49 | 170 |
| Msa1133340 | MtrunA17_Chr2g0333641 | 41.065 | 263 | 127 | 7 | 108 | 369 | 67 | 302 | 2.71e-49 | 168 |
| Msa1133340 | MtrunA17_Chr8g0336681 | 39.338 | 272 | 123 | 8 | 111 | 370 | 90 | 331 | 5.56e-46 | 160 |
| Msa1133340 | MtrunA17_Chr4g0049331 | 45.960 | 198 | 99 | 4 | 182 | 377 | 119 | 310 | 5.27e-45 | 157 |
| Msa1133340 | MtrunA17_Chr4g0054561 | 47.872 | 188 | 86 | 6 | 185 | 369 | 142 | 320 | 6.73e-45 | 157 |
| Msa1133340 | MtrunA17_Chr2g0333621 | 39.194 | 273 | 139 | 7 | 108 | 378 | 68 | 315 | 8.72e-45 | 157 |
| Msa1133340 | MtrunA17_Chr4g0054551 | 46.277 | 188 | 89 | 6 | 185 | 369 | 142 | 320 | 2.35e-44 | 156 |
| Msa1133340 | MtrunA17_Chr4g0054571 | 38.438 | 320 | 153 | 12 | 69 | 376 | 44 | 331 | 1.17e-43 | 154 |
| Msa1133340 | MtrunA17_Chr5g0400671 | 34.441 | 331 | 159 | 13 | 68 | 374 | 27 | 323 | 1.27e-40 | 146 |
| Msa1133340 | MtrunA17_Chr2g0333611 | 38.532 | 218 | 108 | 7 | 167 | 376 | 18 | 217 | 1.35e-39 | 140 |
| Msa1133340 | MtrunA17_Chr2g0333541 | 40.092 | 217 | 126 | 2 | 159 | 373 | 53 | 267 | 1.77e-39 | 142 |
| Msa1133340 | MtrunA17_Chr7g0249811 | 31.231 | 333 | 179 | 8 | 74 | 382 | 26 | 332 | 3.35e-37 | 137 |
| Msa1133340 | MtrunA17_Chr4g0002831 | 41.975 | 162 | 61 | 5 | 221 | 372 | 64 | 202 | 2.66e-28 | 110 |
| Msa1133340 | MtrunA17_Chr7g0233441 | 39.752 | 161 | 65 | 4 | 221 | 372 | 57 | 194 | 2.30e-26 | 104 |
| Msa1133340 | MtrunA17_Chr4g0002851 | 38.125 | 160 | 61 | 4 | 221 | 372 | 65 | 194 | 1.60e-24 | 99.8 |
| Msa1133340 | MtrunA17_Chr1g0185621 | 31.492 | 181 | 113 | 4 | 198 | 369 | 475 | 653 | 4.72e-18 | 85.9 |
| Msa1133340 | MtrunA17_Chr8g0366751 | 36.585 | 164 | 88 | 4 | 190 | 339 | 448 | 609 | 4.87e-18 | 85.9 |
| Msa1133340 | MtrunA17_Chr8g0346161 | 30.405 | 148 | 87 | 4 | 198 | 339 | 291 | 428 | 1.00e-16 | 81.6 |
| Msa1133340 | MtrunA17_Chr5g0411341 | 31.522 | 184 | 102 | 4 | 190 | 355 | 479 | 656 | 7.28e-15 | 76.3 |
| Msa1133340 | MtrunA17_Chr7g0275821 | 53.571 | 56 | 26 | 0 | 198 | 253 | 252 | 307 | 6.06e-14 | 72.8 |
| Msa1133340 | MtrunA17_Chr7g0260841 | 47.059 | 68 | 30 | 1 | 190 | 251 | 341 | 408 | 4.91e-13 | 70.5 |
| Msa1133340 | MtrunA17_Chr8g0346151 | 33.051 | 118 | 70 | 4 | 198 | 311 | 279 | 391 | 1.72e-12 | 68.6 |
| Msa1133340 | MtrunA17_Chr8g0365711 | 25.595 | 168 | 112 | 5 | 191 | 351 | 237 | 398 | 1.98e-12 | 68.2 |
| Msa1133340 | MtrunA17_Chr1g0211081 | 25.434 | 173 | 106 | 3 | 190 | 339 | 309 | 481 | 2.34e-12 | 68.2 |
| Msa1133340 | MtrunA17_Chr3g0131691 | 27.097 | 155 | 108 | 1 | 183 | 332 | 283 | 437 | 2.47e-12 | 68.2 |
| Msa1133340 | MtrunA17_Chr7g0270871 | 46.875 | 64 | 34 | 0 | 187 | 250 | 201 | 264 | 2.87e-11 | 64.3 |
| Msa1133340 | MtrunA17_Chr1g0153241 | 36.538 | 104 | 63 | 2 | 153 | 254 | 49 | 151 | 4.41e-11 | 62.8 |
| Msa1133340 | MtrunA17_Chr7g0252041 | 26.471 | 170 | 111 | 4 | 199 | 357 | 287 | 453 | 4.42e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1133340 | AT4G37850.2 | 38.966 | 290 | 141 | 10 | 101 | 377 | 62 | 328 | 4.05e-51 | 174 |
| Msa1133340 | AT4G37850.1 | 38.966 | 290 | 141 | 10 | 101 | 377 | 62 | 328 | 4.05e-51 | 174 |
| Msa1133340 | AT2G22750.2 | 46.154 | 195 | 104 | 1 | 183 | 376 | 110 | 304 | 2.39e-44 | 155 |
| Msa1133340 | AT2G22750.3 | 37.037 | 378 | 182 | 16 | 7 | 376 | 3 | 332 | 2.72e-44 | 156 |
| Msa1133340 | AT2G22750.5 | 46.429 | 196 | 102 | 3 | 183 | 376 | 134 | 328 | 3.57e-44 | 156 |
| Msa1133340 | AT2G22750.1 | 46.154 | 195 | 103 | 2 | 183 | 376 | 110 | 303 | 6.62e-43 | 152 |
| Msa1133340 | AT2G22750.4 | 37.037 | 378 | 181 | 17 | 7 | 376 | 3 | 331 | 8.65e-43 | 152 |
| Msa1133340 | AT2G22760.1 | 42.487 | 193 | 103 | 5 | 186 | 374 | 107 | 295 | 8.80e-41 | 146 |
| Msa1133340 | AT2G22760.2 | 43.023 | 172 | 91 | 5 | 186 | 354 | 107 | 274 | 2.84e-34 | 128 |
| Msa1133340 | AT2G22770.1 | 32.915 | 319 | 141 | 11 | 82 | 372 | 44 | 317 | 1.53e-30 | 119 |
| Msa1133340 | AT4G17880.1 | 32.000 | 175 | 102 | 3 | 190 | 355 | 402 | 568 | 4.82e-16 | 80.1 |
| Msa1133340 | AT1G32640.1 | 33.766 | 154 | 82 | 4 | 190 | 332 | 438 | 582 | 7.90e-16 | 79.7 |
| Msa1133340 | AT5G46760.1 | 27.179 | 195 | 113 | 5 | 190 | 358 | 401 | 592 | 1.95e-15 | 78.2 |
| Msa1133340 | AT2G46510.1 | 47.297 | 74 | 33 | 1 | 190 | 257 | 381 | 454 | 5.72e-15 | 77.0 |
| Msa1133340 | AT1G01260.1 | 36.066 | 122 | 51 | 3 | 192 | 313 | 427 | 521 | 6.83e-15 | 76.6 |
| Msa1133340 | AT1G01260.2 | 36.066 | 122 | 51 | 3 | 192 | 313 | 427 | 521 | 6.83e-15 | 76.6 |
| Msa1133340 | AT1G01260.3 | 36.066 | 122 | 51 | 3 | 192 | 313 | 427 | 521 | 6.83e-15 | 76.6 |
| Msa1133340 | AT4G16430.1 | 49.254 | 67 | 34 | 0 | 192 | 258 | 314 | 380 | 4.68e-14 | 73.9 |
| Msa1133340 | AT1G63650.3 | 28.571 | 154 | 85 | 4 | 198 | 332 | 405 | 552 | 3.29e-13 | 71.6 |
| Msa1133340 | AT1G63650.1 | 28.571 | 154 | 85 | 4 | 198 | 332 | 405 | 552 | 3.29e-13 | 71.6 |
| Msa1133340 | AT1G63650.2 | 28.571 | 154 | 85 | 4 | 198 | 332 | 405 | 552 | 3.29e-13 | 71.6 |
| Msa1133340 | AT2G16910.1 | 28.659 | 164 | 94 | 4 | 199 | 342 | 315 | 475 | 1.77e-12 | 69.3 |
| Msa1133340 | AT4G09820.1 | 29.375 | 160 | 74 | 4 | 189 | 339 | 352 | 481 | 2.33e-12 | 68.6 |
| Msa1133340 | AT3G26744.1 | 27.879 | 165 | 113 | 2 | 199 | 357 | 308 | 472 | 3.21e-12 | 68.2 |
| Msa1133340 | AT3G26744.4 | 27.879 | 165 | 113 | 2 | 199 | 357 | 308 | 472 | 3.21e-12 | 68.2 |
| Msa1133340 | AT3G26744.2 | 27.879 | 165 | 113 | 2 | 199 | 357 | 308 | 472 | 3.21e-12 | 68.2 |
| Msa1133340 | AT5G41315.3 | 25.126 | 199 | 120 | 5 | 192 | 367 | 440 | 632 | 3.26e-12 | 68.6 |
| Msa1133340 | AT5G41315.1 | 25.126 | 199 | 120 | 5 | 192 | 367 | 435 | 627 | 3.42e-12 | 68.6 |
| Msa1133340 | AT5G41315.2 | 25.126 | 199 | 120 | 5 | 192 | 367 | 443 | 635 | 3.48e-12 | 68.6 |
| Msa1133340 | AT4G00870.1 | 32.800 | 125 | 64 | 2 | 199 | 314 | 250 | 363 | 5.21e-12 | 67.4 |
| Msa1133340 | AT3G26744.6 | 28.777 | 139 | 94 | 1 | 199 | 332 | 308 | 446 | 8.85e-12 | 67.0 |
| Msa1133340 | AT5G57150.3 | 28.402 | 169 | 107 | 4 | 196 | 355 | 53 | 216 | 2.07e-11 | 63.5 |
| Msa1133340 | AT2G28160.2 | 28.743 | 167 | 101 | 5 | 179 | 340 | 117 | 270 | 2.44e-11 | 64.7 |
| Msa1133340 | AT2G28160.1 | 28.743 | 167 | 101 | 5 | 179 | 340 | 117 | 270 | 2.54e-11 | 64.7 |
| Msa1133340 | AT4G29930.1 | 26.286 | 175 | 111 | 4 | 199 | 356 | 55 | 228 | 3.00e-11 | 63.5 |
| Msa1133340 | AT4G29930.6 | 26.415 | 159 | 105 | 3 | 199 | 356 | 55 | 202 | 3.36e-11 | 63.2 |
| Msa1133340 | AT5G57150.2 | 28.571 | 168 | 106 | 4 | 196 | 354 | 53 | 215 | 3.46e-11 | 63.2 |
| Msa1133340 | AT4G29930.3 | 26.012 | 173 | 110 | 4 | 199 | 354 | 55 | 226 | 3.63e-11 | 63.5 |
| Msa1133340 | AT4G29930.7 | 26.012 | 173 | 110 | 4 | 199 | 354 | 55 | 226 | 3.63e-11 | 63.5 |
| Msa1133340 | AT5G57150.1 | 28.824 | 170 | 107 | 4 | 196 | 356 | 52 | 216 | 3.74e-11 | 63.2 |
| Msa1133340 | AT4G29930.2 | 25.786 | 159 | 103 | 2 | 199 | 356 | 55 | 199 | 3.86e-11 | 62.8 |
| Msa1133340 | AT5G57150.5 | 28.571 | 168 | 106 | 4 | 196 | 354 | 52 | 214 | 4.15e-11 | 62.8 |
| Msa1133340 | AT5G57150.4 | 28.571 | 168 | 106 | 4 | 196 | 354 | 53 | 215 | 4.51e-11 | 63.2 |
| Msa1133340 | AT4G29930.5 | 24.841 | 157 | 103 | 2 | 199 | 354 | 55 | 197 | 7.09e-11 | 62.4 |
Find 88 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGAATCCCCTTGTGCTTC+TGG | 0.171911 | 7_3:-86689720 | None:intergenic |
| GTGTTGGTAGGAGGAGAATT+TGG | 0.206656 | 7_3:-86688886 | None:intergenic |
| CAGCAAATGGCTTTCTGATT+TGG | 0.214444 | 7_3:+86688456 | Msa1133340:CDS |
| TTTCACATGGACTAATTAAT+AGG | 0.262725 | 7_3:+86691265 | Msa1133340:three_prime_UTR |
| CAGATATTATGAGTTAATAT+TGG | 0.263931 | 7_3:+86691303 | Msa1133340:three_prime_UTR |
| TAAAGAGCGTTTGGAAGTTT+TGG | 0.276908 | 7_3:+86689510 | Msa1133340:CDS |
| GACATGAATGTTTCTCATTT+GGG | 0.281293 | 7_3:-86688983 | None:intergenic |
| AGACATGAATGTTTCTCATT+TGG | 0.284212 | 7_3:-86688984 | None:intergenic |
| CATTAGCATCAAGGAAGTTT+AGG | 0.295193 | 7_3:-86688606 | None:intergenic |
| AAGTTTAGGTTGCATTCTTC+AGG | 0.308908 | 7_3:-86688592 | None:intergenic |
| GATGAATAAGTAAAATGTTC+GGG | 0.311408 | 7_3:-86691365 | None:intergenic |
| CCAGAAGCACAAGGGGATTC+TGG | 0.313026 | 7_3:+86689720 | Msa1133340:CDS |
| GAGTATTAAACATATCTTCT+AGG | 0.314558 | 7_3:-86691037 | None:intergenic |
| TGTTGGTAGGAGGAGAATTT+GGG | 0.316269 | 7_3:-86688885 | None:intergenic |
| TCTTGTTCCTAACCTGAAAA+AGG | 0.316557 | 7_3:+86689158 | Msa1133340:CDS |
| GTTTCTTCTGATACGTTCAT+TGG | 0.319465 | 7_3:-86688433 | None:intergenic |
| TTTCAAGCTTTGTGCTGAAT+TGG | 0.333352 | 7_3:-86688320 | None:intergenic |
| CAGGAGTGAGTCCACAAAAC+TGG | 0.341350 | 7_3:-86688912 | None:intergenic |
| AGATATTATGAGTTAATATT+GGG | 0.344583 | 7_3:+86691304 | Msa1133340:three_prime_UTR |
| ATAGCAGTGTCTTACCCTTT+GGG | 0.356671 | 7_3:+86689788 | Msa1133340:CDS |
| CAAATCAGAAAGCCATTTGC+TGG | 0.362893 | 7_3:-86688455 | None:intergenic |
| GAAGTGTTGTTCCTTCAAAC+AGG | 0.367624 | 7_3:-86688372 | None:intergenic |
| GGCGTTGGCTCGAGACCTTT+TGG | 0.371700 | 7_3:-86689067 | None:intergenic |
| GATGATGATGGAGAAAGTTT+TGG | 0.378456 | 7_3:-86688820 | None:intergenic |
| AATAGCAGTGTCTTACCCTT+TGG | 0.385303 | 7_3:+86689787 | Msa1133340:CDS |
| GCTTTCTTTCAGCCATGATA+TGG | 0.385864 | 7_3:-86689095 | None:intergenic |
| CTGAACTCAAACATTGTTGT+TGG | 0.389224 | 7_3:-86688657 | None:intergenic |
| TCTCACTCTTCCCTGTTTGA+AGG | 0.394980 | 7_3:+86688361 | Msa1133340:five_prime_UTR |
| TAGAAAGGGTTTGCATTCTC+AGG | 0.397241 | 7_3:-86690971 | None:intergenic |
| ATCACATGCTATTTATAGAA+AGG | 0.399582 | 7_3:-86690986 | None:intergenic |
| GAAAGAGCTTAAAGAGCGTT+TGG | 0.403263 | 7_3:+86689501 | Msa1133340:CDS |
| CTGCAAGAGCAATGAAGCTT+TGG | 0.405262 | 7_3:-86689134 | None:intergenic |
| CATCATCATCAATGATACTA+TGG | 0.407350 | 7_3:-86689588 | None:intergenic |
| TCATTACACAAGTGTCATAA+TGG | 0.412838 | 7_3:+86688393 | Msa1133340:exon |
| AGATGAATAAGTAAAATGTT+CGG | 0.413907 | 7_3:-86691366 | None:intergenic |
| GTCTCAACTCAAAATCCTAA+AGG | 0.422120 | 7_3:+86689003 | Msa1133340:CDS |
| GTTGGTGATAGTTGTGGAAT+TGG | 0.425475 | 7_3:-86688683 | None:intergenic |
| TGAACTCAAACATTGTTGTT+GGG | 0.428381 | 7_3:-86688656 | None:intergenic |
| CAGGGAAAGAGATGCTGATT+CGG | 0.434047 | 7_3:+86689689 | Msa1133340:CDS |
| CAAGTGCAAGCAAAAGTGTC+AGG | 0.441082 | 7_3:+86689670 | Msa1133340:CDS |
| AGGAGTGAGTCCACAAAACT+GGG | 0.451243 | 7_3:-86688911 | None:intergenic |
| TCACATGCTATTTATAGAAA+GGG | 0.453099 | 7_3:-86690985 | None:intergenic |
| TCTCAACTCAAAATCCTAAA+GGG | 0.458505 | 7_3:+86689004 | Msa1133340:CDS |
| TCATATGATGAGAGTATTGA+AGG | 0.466240 | 7_3:+86689628 | Msa1133340:CDS |
| TGTTGTTGGGTTTGTTCTTG+TGG | 0.480560 | 7_3:-86688643 | None:intergenic |
| TGACATTACTATCATTGCTC+AGG | 0.494765 | 7_3:+86689819 | Msa1133340:CDS |
| AGCAATGATAGTAATGTCAA+TGG | 0.495292 | 7_3:-86689815 | None:intergenic |
| TTTGACTTTGAGTTTAAGGC+AGG | 0.501893 | 7_3:-86688931 | None:intergenic |
| AGTATTAAACATATCTTCTA+GGG | 0.516207 | 7_3:-86691036 | None:intergenic |
| TTCAGCCATGATATGGTCAT+CGG | 0.521311 | 7_3:-86689088 | None:intergenic |
| CATGATATGGTCATCGGCGT+TGG | 0.524246 | 7_3:-86689082 | None:intergenic |
| AAACTTCCTTGATGCTAATG+AGG | 0.524526 | 7_3:+86688609 | Msa1133340:CDS |
| AAGATCTTTGTTATATGCAG+AGG | 0.540594 | 7_3:+86691329 | Msa1133340:three_prime_UTR |
| TCATCAATGATACTATGGTC+TGG | 0.549545 | 7_3:-86689583 | None:intergenic |
| ACTCTTCCTCATTAGCATCA+AGG | 0.553454 | 7_3:-86688615 | None:intergenic |
| TATCAGAAGAAACCAGCAAA+TGG | 0.554188 | 7_3:+86688443 | Msa1133340:CDS |
| TGAATGTTTCTCATTTGGGG+TGG | 0.558418 | 7_3:-86688979 | None:intergenic |
| CAACGCCGATGACCATATCA+TGG | 0.570050 | 7_3:+86689083 | Msa1133340:CDS |
| AAAGATGAGTTAGATGATGA+TGG | 0.577216 | 7_3:-86688832 | None:intergenic |
| TAGCAGTGTCTTACCCTTTG+GGG | 0.577291 | 7_3:+86689789 | Msa1133340:CDS |
| AGGAATATGTTCATTTCACA+TGG | 0.578269 | 7_3:+86691252 | Msa1133340:three_prime_UTR |
| TAAAATTTGGTAGATGGACA+AGG | 0.590351 | 7_3:+86689447 | Msa1133340:intron |
| ATGTCAATGGAATCCCCAAA+GGG | 0.596532 | 7_3:-86689802 | None:intergenic |
| AGGGTACAACTTGAGCATAA+AGG | 0.600355 | 7_3:+86690798 | Msa1133340:CDS |
| ACTTCAATGCTGCCATGCGT+AGG | 0.601033 | 7_3:-86690834 | None:intergenic |
| TGAAATTGAGAGACCAACCA+TGG | 0.603140 | 7_3:+86688750 | Msa1133340:CDS |
| TGGTAGGAGGAGAATTTGGG+AGG | 0.603292 | 7_3:-86688882 | None:intergenic |
| GAATGAGTTGGTGATAGTTG+TGG | 0.603767 | 7_3:-86688689 | None:intergenic |
| GGGGATTCTGGTGAAAGTCA+TGG | 0.606251 | 7_3:+86689732 | Msa1133340:CDS |
| GATTCACTGCCAGAAGCACA+AGG | 0.606463 | 7_3:+86689711 | Msa1133340:CDS |
| TTCACTGCCAGAAGCACAAG+GGG | 0.606586 | 7_3:+86689713 | Msa1133340:CDS |
| CATCAAAGCATGAATGAACA+AGG | 0.610331 | 7_3:+86690863 | Msa1133340:exon |
| AATGTCAATGGAATCCCCAA+AGG | 0.614554 | 7_3:-86689803 | None:intergenic |
| TGTTTCATCAGTGAATGAGT+TGG | 0.619624 | 7_3:-86688701 | None:intergenic |
| AACGGAGGGAGTATATATTG+AGG | 0.620066 | 7_3:+86691191 | Msa1133340:intron |
| ACATGAATGTTTCTCATTTG+GGG | 0.622328 | 7_3:-86688982 | None:intergenic |
| AAGTGTTGTTCCTTCAAACA+GGG | 0.627695 | 7_3:-86688371 | None:intergenic |
| AAGTGCAAGCAAAAGTGTCA+GGG | 0.633121 | 7_3:+86689671 | Msa1133340:CDS |
| GAAAACAAAGGTAGAGTCCG+TGG | 0.640082 | 7_3:+86689546 | Msa1133340:CDS |
| GTCACTCTAGTTGAGATCGT+AGG | 0.648592 | 7_3:+86691232 | Msa1133340:three_prime_UTR |
| GAGTGAGTCCACAAAACTGG+GGG | 0.649560 | 7_3:-86688909 | None:intergenic |
| ATGAATAAGTAAAATGTTCG+GGG | 0.657935 | 7_3:-86691364 | None:intergenic |
| TGGTTTCTTCAGAACAACCA+CGG | 0.659948 | 7_3:-86689563 | None:intergenic |
| GGAGTGAGTCCACAAAACTG+GGG | 0.660208 | 7_3:-86688910 | None:intergenic |
| ATTCACTGCCAGAAGCACAA+GGG | 0.669813 | 7_3:+86689712 | Msa1133340:CDS |
| AGAACAAAACAAGAAAACAA+AGG | 0.679620 | 7_3:+86689534 | Msa1133340:CDS |
| ACTTGTCAAGAACCTACGCA+TGG | 0.686710 | 7_3:+86690822 | Msa1133340:CDS |
| AGTGAGTCCACAAAACTGGG+GGG | 0.773710 | 7_3:-86688908 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTATTAATTATTATT+AGG | + | chr7_3:86689958-86689977 | Msa1133340:intron | 0.0% |
| !! | ATTATTATTAATTATTATTA+GGG | + | chr7_3:86689959-86689978 | Msa1133340:intron | 0.0% |
| !!! | AATTTGCTTATATTTAAAAA+CGG | - | chr7_3:86691173-86691192 | None:intergenic | 10.0% |
| !!! | AATTTGCTTATATTTAAAAA+CGG | + | chr7_3:86691173-86691192 | Msa1133340:intron | 10.0% |
| !! | TCAAATACTGTTATAAAATT+TGG | + | chr7_3:86689434-86689453 | Msa1133340:intron | 15.0% |
| !! | TTTAAACAATGAATATTTAG+TGG | - | chr7_3:86689877-86689896 | None:intergenic | 15.0% |
| !!! | AAGTATTATTATTTTGTTTG+AGG | + | chr7_3:86689931-86689950 | Msa1133340:intron | 15.0% |
| !!! | ATTATTACATTTTTTGTCTA+GGG | + | chr7_3:86690168-86690187 | Msa1133340:intron | 15.0% |
| !!! | ATTAAATGCACAAAATTTTA+AGG | + | chr7_3:86690442-86690461 | Msa1133340:intron | 15.0% |
| !!! | ATAAGCAAATTTTACTTTTT+AGG | + | chr7_3:86691075-86691094 | Msa1133340:intron | 15.0% |
| !! | AGATATTATGAGTTAATATT+GGG | + | chr7_3:86691304-86691323 | Msa1133340:three_prime_UTR | 15.0% |
| !!! | CCATTATTTGATCTTTTTAT+AGG | - | chr7_3:86688295-86688314 | None:intergenic | 20.0% |
| !! | CCTATAAAAAGATCAAATAA+TGG | + | chr7_3:86688292-86688311 | Msa1133340:five_prime_UTR | 20.0% |
| !!! | TGATTTGGTAAGAAAATTAA+AGG | + | chr7_3:86688471-86688490 | Msa1133340:intron | 20.0% |
| !!! | TAATTTTTTTTTGTTGTTGC+AGG | + | chr7_3:86688546-86688565 | Msa1133340:intron | 20.0% |
| !! | ATATTTAGTGGCAATTATTA+AGG | - | chr7_3:86689865-86689884 | None:intergenic | 20.0% |
| !! | AATAGTGAAAAAATGTTTAG+TGG | - | chr7_3:86689908-86689927 | None:intergenic | 20.0% |
| !!! | AACTTGTTAAGCATAAAAAA+AGG | + | chr7_3:86690005-86690024 | Msa1133340:intron | 20.0% |
| !! | ATAATTAATGAAATGCTAAC+CGG | - | chr7_3:86690141-86690160 | None:intergenic | 20.0% |
| !!! | CATTATTACATTTTTTGTCT+AGG | + | chr7_3:86690167-86690186 | Msa1133340:intron | 20.0% |
| !!! | TTATTACATTTTTTGTCTAG+GGG | + | chr7_3:86690169-86690188 | Msa1133340:intron | 20.0% |
| !!! | CTTGTGTTGTTTTTTTTTTT+TGG | + | chr7_3:86690319-86690338 | Msa1133340:intron | 20.0% |
| !!! | CACTACTTTTTTTTTATATC+AGG | + | chr7_3:86690516-86690535 | Msa1133340:intron | 20.0% |
| !!! | TTTTCTATCTGTTTCTTTTT+AGG | + | chr7_3:86690666-86690685 | Msa1133340:intron | 20.0% |
| !!! | TCTTTTTAGGAATTTTGTTT+AGG | + | chr7_3:86690679-86690698 | Msa1133340:intron | 20.0% |
| !!! | TATTGTTATACTTTTGTAGA+TGG | + | chr7_3:86690771-86690790 | Msa1133340:intron | 20.0% |
| !!! | ATTGTTATACTTTTGTAGAT+GGG | + | chr7_3:86690772-86690791 | Msa1133340:intron | 20.0% |
| !! | AGTATTAAACATATCTTCTA+GGG | - | chr7_3:86691039-86691058 | None:intergenic | 20.0% |
| !! | CAGATATTATGAGTTAATAT+TGG | + | chr7_3:86691303-86691322 | Msa1133340:three_prime_UTR | 20.0% |
| !! | AGATGAATAAGTAAAATGTT+CGG | - | chr7_3:86691369-86691388 | None:intergenic | 20.0% |
| ! | CTGTTATAAAATTTGGTAGA+TGG | + | chr7_3:86689441-86689460 | Msa1133340:intron | 25.0% |
| ! | AGAACAAAACAAGAAAACAA+AGG | + | chr7_3:86689534-86689553 | Msa1133340:CDS | 25.0% |
| ! | TTTATGCTTAACAAGTTTCT+CGG | - | chr7_3:86690002-86690021 | None:intergenic | 25.0% |
| !! | GTTAACGAAGTTTCTTTTTA+TGG | - | chr7_3:86690040-86690059 | None:intergenic | 25.0% |
| ! | TAATTAATGAAATGCTAACC+GGG | - | chr7_3:86690140-86690159 | None:intergenic | 25.0% |
| !!! | ATAATTAACTTGTGCCTTAA+GGG | - | chr7_3:86690360-86690379 | None:intergenic | 25.0% |
| !!! | AATAATTAACTTGTGCCTTA+AGG | - | chr7_3:86690361-86690380 | None:intergenic | 25.0% |
| ! | CGAGTGTAGAAATAATTTAT+TGG | + | chr7_3:86690381-86690400 | Msa1133340:intron | 25.0% |
| !! | TTAAGGAATACTTCTTCTTT+TGG | + | chr7_3:86690459-86690478 | Msa1133340:intron | 25.0% |
| !! | TAAGGAATACTTCTTCTTTT+GGG | + | chr7_3:86690460-86690479 | Msa1133340:intron | 25.0% |
| !! | TGTTGGCTGTTATAATTAAT+TGG | - | chr7_3:86690575-86690594 | None:intergenic | 25.0% |
| !!! | AAAGTATCGTCAATAATTGT+TGG | - | chr7_3:86690592-86690611 | None:intergenic | 25.0% |
| ! | TTATTACACGTATTCATGAA+AGG | + | chr7_3:86690619-86690638 | Msa1133340:intron | 25.0% |
| ! | TATTACACGTATTCATGAAA+GGG | + | chr7_3:86690620-86690639 | Msa1133340:intron | 25.0% |
| ! | AATACAATTAAACAACTCGT+GGG | - | chr7_3:86690744-86690763 | None:intergenic | 25.0% |
| ! | TAATACAATTAAACAACTCG+TGG | - | chr7_3:86690745-86690764 | None:intergenic | 25.0% |
| !! | TCTGTGATTTTTATGTCAAA+TGG | - | chr7_3:86690906-86690925 | None:intergenic | 25.0% |
| !! | TCACATGCTATTTATAGAAA+GGG | - | chr7_3:86690988-86691007 | None:intergenic | 25.0% |
| !! | ATCACATGCTATTTATAGAA+AGG | - | chr7_3:86690989-86691008 | None:intergenic | 25.0% |
| ! | GAGTATTAAACATATCTTCT+AGG | - | chr7_3:86691040-86691059 | None:intergenic | 25.0% |
| ! | TGCTTATATTTAAAAACGGA+GGG | - | chr7_3:86691177-86691196 | None:intergenic | 25.0% |
| ! | TTGCTTATATTTAAAAACGG+AGG | - | chr7_3:86691176-86691195 | None:intergenic | 25.0% |
| ! | CATTCAATTAATGATGTATG+TGG | + | chr7_3:86691100-86691119 | Msa1133340:intron | 25.0% |
| ! | GATGTATGTGGTTTATAATA+TGG | + | chr7_3:86691112-86691131 | Msa1133340:intron | 25.0% |
| ! | TTGCTTATATTTAAAAACGG+AGG | + | chr7_3:86691176-86691195 | Msa1133340:intron | 25.0% |
| ! | TGCTTATATTTAAAAACGGA+GGG | + | chr7_3:86691177-86691196 | Msa1133340:intron | 25.0% |
| !! | TTTCACATGGACTAATTAAT+AGG | + | chr7_3:86691265-86691284 | Msa1133340:three_prime_UTR | 25.0% |
| ! | ATGAATAAGTAAAATGTTCG+GGG | - | chr7_3:86691367-86691386 | None:intergenic | 25.0% |
| ! | GATGAATAAGTAAAATGTTC+GGG | - | chr7_3:86691368-86691387 | None:intergenic | 25.0% |
| TCATTACACAAGTGTCATAA+TGG | + | chr7_3:86688393-86688412 | Msa1133340:exon | 30.0% | |
| !!! | TTTTTTGTTGTTGCAGGAAA+TGG | + | chr7_3:86688552-86688571 | Msa1133340:intron | 30.0% |
| ! | TGAACTCAAACATTGTTGTT+GGG | - | chr7_3:86688659-86688678 | None:intergenic | 30.0% |
| !!! | ACTTTTGACTCTTTTGACTT+TGG | + | chr7_3:86688724-86688743 | Msa1133340:CDS | 30.0% |
| AAAGATGAGTTAGATGATGA+TGG | - | chr7_3:86688835-86688854 | None:intergenic | 30.0% | |
| !!! | CTGTTTTGACTTTGAGTTTA+AGG | - | chr7_3:86688938-86688957 | None:intergenic | 30.0% |
| ACATGAATGTTTCTCATTTG+GGG | - | chr7_3:86688985-86689004 | None:intergenic | 30.0% | |
| GACATGAATGTTTCTCATTT+GGG | - | chr7_3:86688986-86689005 | None:intergenic | 30.0% | |
| AGACATGAATGTTTCTCATT+TGG | - | chr7_3:86688987-86689006 | None:intergenic | 30.0% | |
| TCTCAACTCAAAATCCTAAA+GGG | + | chr7_3:86689004-86689023 | Msa1133340:CDS | 30.0% | |
| !!! | TGTTGCAAAGTTTTGAGTTT+TGG | - | chr7_3:86689034-86689053 | None:intergenic | 30.0% |
| CAAAAACATCTCAAACCAAA+AGG | + | chr7_3:86689052-86689071 | Msa1133340:CDS | 30.0% | |
| TAAAATTTGGTAGATGGACA+AGG | + | chr7_3:86689447-86689466 | Msa1133340:intron | 30.0% | |
| CATCATCATCAATGATACTA+TGG | - | chr7_3:86689591-86689610 | None:intergenic | 30.0% | |
| !! | TCATATGATGAGAGTATTGA+AGG | + | chr7_3:86689628-86689647 | Msa1133340:CDS | 30.0% |
| AGCAATGATAGTAATGTCAA+TGG | - | chr7_3:86689818-86689837 | None:intergenic | 30.0% | |
| TTAGTGGCAATTATTAAGGT+AGG | - | chr7_3:86689861-86689880 | None:intergenic | 30.0% | |
| AATATCATTAATCAATGCCC+CGG | + | chr7_3:86690119-86690138 | Msa1133340:intron | 30.0% | |
| AATTAATGAAATGCTAACCG+GGG | - | chr7_3:86690139-86690158 | None:intergenic | 30.0% | |
| !!! | AACATTGATTTTGAAAGCGA+GGG | - | chr7_3:86690216-86690235 | None:intergenic | 30.0% |
| !!! | TTTTTTAACATGTGCCCTAA+GGG | + | chr7_3:86690483-86690502 | Msa1133340:intron | 30.0% |
| AGGAATATGTTCATTTCACA+TGG | + | chr7_3:86691252-86691271 | Msa1133340:three_prime_UTR | 30.0% | |
| ! | AAGATCTTTGTTATATGCAG+AGG | + | chr7_3:86691329-86691348 | Msa1133340:three_prime_UTR | 30.0% |
| ! | TTTCAAGCTTTGTGCTGAAT+TGG | - | chr7_3:86688323-86688342 | None:intergenic | 35.0% |
| ! | AAGTGTTGTTCCTTCAAACA+GGG | - | chr7_3:86688374-86688393 | None:intergenic | 35.0% |
| GTTTCTTCTGATACGTTCAT+TGG | - | chr7_3:86688436-86688455 | None:intergenic | 35.0% | |
| TATCAGAAGAAACCAGCAAA+TGG | + | chr7_3:86688443-86688462 | Msa1133340:CDS | 35.0% | |
| !! | AAGTTTAGGTTGCATTCTTC+AGG | - | chr7_3:86688595-86688614 | None:intergenic | 35.0% |
| CATTAGCATCAAGGAAGTTT+AGG | - | chr7_3:86688609-86688628 | None:intergenic | 35.0% | |
| AAACTTCCTTGATGCTAATG+AGG | + | chr7_3:86688609-86688628 | Msa1133340:CDS | 35.0% | |
| CTGAACTCAAACATTGTTGT+TGG | - | chr7_3:86688660-86688679 | None:intergenic | 35.0% | |
| TGTTTCATCAGTGAATGAGT+TGG | - | chr7_3:86688704-86688723 | None:intergenic | 35.0% | |
| ! | AACAATTGTTTTCAGCTCCA+TGG | - | chr7_3:86688770-86688789 | None:intergenic | 35.0% |
| !! | TGGAGAAAGTTTTGGTGAAA+TGG | - | chr7_3:86688815-86688834 | None:intergenic | 35.0% |
| !!! | GATGATGATGGAGAAAGTTT+TGG | - | chr7_3:86688823-86688842 | None:intergenic | 35.0% |
| ! | TTTGACTTTGAGTTTAAGGC+AGG | - | chr7_3:86688934-86688953 | None:intergenic | 35.0% |
| GTCTCAACTCAAAATCCTAA+AGG | + | chr7_3:86689003-86689022 | Msa1133340:CDS | 35.0% | |
| !!! | TGAGTTTTGGATAACCCTTT+AGG | - | chr7_3:86689021-86689040 | None:intergenic | 35.0% |
| TCTTGTTCCTAACCTGAAAA+AGG | + | chr7_3:86689158-86689177 | Msa1133340:CDS | 35.0% | |
| !!! | AGTGTTACCTTTTTCAGGTT+AGG | - | chr7_3:86689168-86689187 | None:intergenic | 35.0% |
| !! | TGTGAAGTGTTACCTTTTTC+AGG | - | chr7_3:86689173-86689192 | None:intergenic | 35.0% |
| CACTTCACACTTATGTTTGA+AGG | + | chr7_3:86689184-86689203 | Msa1133340:intron | 35.0% | |
| AATGTGTATTAGTGTCGTGT+TGG | - | chr7_3:86689239-86689258 | None:intergenic | 35.0% | |
| !! | TTGAGTGCTATTTAGCTAGT+GGG | - | chr7_3:86689369-86689388 | None:intergenic | 35.0% |
| !! | TTTGAGTGCTATTTAGCTAG+TGG | - | chr7_3:86689370-86689389 | None:intergenic | 35.0% |
| !!! | TAAAGAGCGTTTGGAAGTTT+TGG | + | chr7_3:86689510-86689529 | Msa1133340:CDS | 35.0% |
| TCATCAATGATACTATGGTC+TGG | - | chr7_3:86689586-86689605 | None:intergenic | 35.0% | |
| TGACATTACTATCATTGCTC+AGG | + | chr7_3:86689819-86689838 | Msa1133340:CDS | 35.0% | |
| TACTATCATTGCTCAGGTAA+AGG | + | chr7_3:86689825-86689844 | Msa1133340:intron | 35.0% | |
| ATTATTAGGGTCATGCTAAC+CGG | + | chr7_3:86689972-86689991 | Msa1133340:intron | 35.0% | |
| !!! | CAACATTGATTTTGAAAGCG+AGG | - | chr7_3:86690217-86690236 | None:intergenic | 35.0% |
| !! | AATGTTAACTTGTGCCCTTA+AGG | + | chr7_3:86690343-86690362 | Msa1133340:intron | 35.0% |
| !!! | GTTTTTTAACATGTGCCCTA+AGG | + | chr7_3:86690482-86690501 | Msa1133340:intron | 35.0% |
| ! | ATACTTTTGTAGATGGGTGA+AGG | + | chr7_3:86690778-86690797 | Msa1133340:intron | 35.0% |
| ! | TACTTTTGTAGATGGGTGAA+GGG | + | chr7_3:86690779-86690798 | Msa1133340:intron | 35.0% |
| CATCAAAGCATGAATGAACA+AGG | + | chr7_3:86690863-86690882 | Msa1133340:exon | 35.0% | |
| !! | GAAGTGTTGTTCCTTCAAAC+AGG | - | chr7_3:86688375-86688394 | None:intergenic | 40.0% |
| CAAATCAGAAAGCCATTTGC+TGG | - | chr7_3:86688458-86688477 | None:intergenic | 40.0% | |
| CAGCAAATGGCTTTCTGATT+TGG | + | chr7_3:86688456-86688475 | Msa1133340:CDS | 40.0% | |
| ACTCTTCCTCATTAGCATCA+AGG | - | chr7_3:86688618-86688637 | None:intergenic | 40.0% | |
| ! | TGTTGTTGGGTTTGTTCTTG+TGG | - | chr7_3:86688646-86688665 | None:intergenic | 40.0% |
| !! | GTTGGTGATAGTTGTGGAAT+TGG | - | chr7_3:86688686-86688705 | None:intergenic | 40.0% |
| !! | GAATGAGTTGGTGATAGTTG+TGG | - | chr7_3:86688692-86688711 | None:intergenic | 40.0% |
| TGAAATTGAGAGACCAACCA+TGG | + | chr7_3:86688750-86688769 | Msa1133340:CDS | 40.0% | |
| ! | ATTGTTTTCAGCTCCATGGT+TGG | - | chr7_3:86688766-86688785 | None:intergenic | 40.0% |
| ! | TGTTGGTAGGAGGAGAATTT+GGG | - | chr7_3:86688888-86688907 | None:intergenic | 40.0% |
| TGAATGTTTCTCATTTGGGG+TGG | - | chr7_3:86688982-86689001 | None:intergenic | 40.0% | |
| TTCAGCCATGATATGGTCAT+CGG | - | chr7_3:86689091-86689110 | None:intergenic | 40.0% | |
| GCTTTCTTTCAGCCATGATA+TGG | - | chr7_3:86689098-86689117 | None:intergenic | 40.0% | |
| TTACTGTCGATGTTGTGTCT+TGG | + | chr7_3:86689308-86689327 | Msa1133340:intron | 40.0% | |
| !! | TGAGTGCTATTTAGCTAGTG+GGG | - | chr7_3:86689368-86689387 | None:intergenic | 40.0% |
| !! | GAAAGAGCTTAAAGAGCGTT+TGG | + | chr7_3:86689501-86689520 | Msa1133340:CDS | 40.0% |
| TGGTTTCTTCAGAACAACCA+CGG | - | chr7_3:86689566-86689585 | None:intergenic | 40.0% | |
| ! | CACTTTTGCTTGCACTTGAA+AGG | - | chr7_3:86689668-86689687 | None:intergenic | 40.0% |
| !! | AAGTGCAAGCAAAAGTGTCA+GGG | + | chr7_3:86689671-86689690 | Msa1133340:CDS | 40.0% |
| AATAGCAGTGTCTTACCCTT+TGG | + | chr7_3:86689787-86689806 | Msa1133340:CDS | 40.0% | |
| ATAGCAGTGTCTTACCCTTT+GGG | + | chr7_3:86689788-86689807 | Msa1133340:CDS | 40.0% | |
| ATGTCAATGGAATCCCCAAA+GGG | - | chr7_3:86689805-86689824 | None:intergenic | 40.0% | |
| AATGTCAATGGAATCCCCAA+AGG | - | chr7_3:86689806-86689825 | None:intergenic | 40.0% | |
| TAACAAGTTTCTCGGAGTAC+CGG | - | chr7_3:86689994-86690013 | None:intergenic | 40.0% | |
| !! | AGTGTTAACTTGTGCCCTTA+GGG | - | chr7_3:86690500-86690519 | None:intergenic | 40.0% |
| !! | TAGTGTTAACTTGTGCCCTT+AGG | - | chr7_3:86690501-86690520 | None:intergenic | 40.0% |
| TACACGTATTCATGAAAGGG+AGG | + | chr7_3:86690623-86690642 | Msa1133340:intron | 40.0% | |
| ACACGTATTCATGAAAGGGA+GGG | + | chr7_3:86690624-86690643 | Msa1133340:intron | 40.0% | |
| AGGGTACAACTTGAGCATAA+AGG | + | chr7_3:86690798-86690817 | Msa1133340:CDS | 40.0% | |
| TAGAAAGGGTTTGCATTCTC+AGG | - | chr7_3:86690974-86690993 | None:intergenic | 40.0% | |
| ! | AACGGAGGGAGTATATATTG+AGG | + | chr7_3:86691191-86691210 | Msa1133340:intron | 40.0% |
| TCTCACTCTTCCCTGTTTGA+AGG | + | chr7_3:86688361-86688380 | Msa1133340:five_prime_UTR | 45.0% | |
| ! | GTGTTGGTAGGAGGAGAATT+TGG | - | chr7_3:86688889-86688908 | None:intergenic | 45.0% |
| AGGAGTGAGTCCACAAAACT+GGG | - | chr7_3:86688914-86688933 | None:intergenic | 45.0% | |
| CTGCAAGAGCAATGAAGCTT+TGG | - | chr7_3:86689137-86689156 | None:intergenic | 45.0% | |
| GAAAACAAAGGTAGAGTCCG+TGG | + | chr7_3:86689546-86689565 | Msa1133340:CDS | 45.0% | |
| !! | CAAGTGCAAGCAAAAGTGTC+AGG | + | chr7_3:86689670-86689689 | Msa1133340:CDS | 45.0% |
| ! | CAGGGAAAGAGATGCTGATT+CGG | + | chr7_3:86689689-86689708 | Msa1133340:CDS | 45.0% |
| ! | ATTCACTGCCAGAAGCACAA+GGG | + | chr7_3:86689712-86689731 | Msa1133340:CDS | 45.0% |
| TAGCAGTGTCTTACCCTTTG+GGG | + | chr7_3:86689789-86689808 | Msa1133340:CDS | 45.0% | |
| GGTCATCTGAGTGACACATT+TGG | - | chr7_3:86690195-86690214 | None:intergenic | 45.0% | |
| !! | GGGAGGGCGTATTTTATTCT+AGG | + | chr7_3:86690640-86690659 | Msa1133340:intron | 45.0% |
| ACTTGTCAAGAACCTACGCA+TGG | + | chr7_3:86690822-86690841 | Msa1133340:CDS | 45.0% | |
| GTCACTCTAGTTGAGATCGT+AGG | + | chr7_3:86691232-86691251 | Msa1133340:three_prime_UTR | 45.0% | |
| TGGTAGGAGGAGAATTTGGG+AGG | - | chr7_3:86688885-86688904 | None:intergenic | 50.0% | |
| AGTGAGTCCACAAAACTGGG+GGG | - | chr7_3:86688911-86688930 | None:intergenic | 50.0% | |
| GAGTGAGTCCACAAAACTGG+GGG | - | chr7_3:86688912-86688931 | None:intergenic | 50.0% | |
| GGAGTGAGTCCACAAAACTG+GGG | - | chr7_3:86688913-86688932 | None:intergenic | 50.0% | |
| CAGGAGTGAGTCCACAAAAC+TGG | - | chr7_3:86688915-86688934 | None:intergenic | 50.0% | |
| CATGATATGGTCATCGGCGT+TGG | - | chr7_3:86689085-86689104 | None:intergenic | 50.0% | |
| CAACGCCGATGACCATATCA+TGG | + | chr7_3:86689083-86689102 | Msa1133340:CDS | 50.0% | |
| ! | GATTCACTGCCAGAAGCACA+AGG | + | chr7_3:86689711-86689730 | Msa1133340:CDS | 50.0% |
| ! | TTCACTGCCAGAAGCACAAG+GGG | + | chr7_3:86689713-86689732 | Msa1133340:CDS | 50.0% |
| GGGGATTCTGGTGAAAGTCA+TGG | + | chr7_3:86689732-86689751 | Msa1133340:CDS | 50.0% | |
| ACTTCAATGCTGCCATGCGT+AGG | - | chr7_3:86690837-86690856 | None:intergenic | 50.0% | |
| !! | CAAAACTGGGGGGTGTTGGT+AGG | - | chr7_3:86688901-86688920 | None:intergenic | 55.0% |
| ! | ACCAACACCCCCCAGTTTTG+TGG | + | chr7_3:86688901-86688920 | Msa1133340:CDS | 55.0% |
| ! | TCCACAAAACTGGGGGGTGT+TGG | - | chr7_3:86688905-86688924 | None:intergenic | 55.0% |
| CCAGAATCCCCTTGTGCTTC+TGG | - | chr7_3:86689723-86689742 | None:intergenic | 55.0% | |
| ! | CCAGAAGCACAAGGGGATTC+TGG | + | chr7_3:86689720-86689739 | Msa1133340:CDS | 55.0% |
| !! | AACTGGGGGGTGTTGGTAGG+AGG | - | chr7_3:86688898-86688917 | None:intergenic | 60.0% |
| !!! | GGCGTTGGCTCGAGACCTTT+TGG | - | chr7_3:86689070-86689089 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 86688289 | 86691423 | 86688289 | ID=Msa1133340;Name=Msa1133340 |
| chr7_3 | mRNA | 86688289 | 86691423 | 86688289 | ID=Msa1133340-mRNA-1;Parent=Msa1133340;Name=Msa1133340-mRNA-1;_AED=0.19;_eAED=0.19;_QI=123|1|1|1|0.75|0.6|5|397|382 |
| chr7_3 | exon | 86688289 | 86688477 | 86688289 | ID=Msa1133340-mRNA-1:exon:26071;Parent=Msa1133340-mRNA-1 |
| chr7_3 | exon | 86688568 | 86689179 | 86688568 | ID=Msa1133340-mRNA-1:exon:26072;Parent=Msa1133340-mRNA-1 |
| chr7_3 | exon | 86689460 | 86689840 | 86689460 | ID=Msa1133340-mRNA-1:exon:26073;Parent=Msa1133340-mRNA-1 |
| chr7_3 | exon | 86690790 | 86691050 | 86690790 | ID=Msa1133340-mRNA-1:exon:26074;Parent=Msa1133340-mRNA-1 |
| chr7_3 | exon | 86691198 | 86691423 | 86691198 | ID=Msa1133340-mRNA-1:exon:26075;Parent=Msa1133340-mRNA-1 |
| chr7_3 | five_prime_UTR | 86688289 | 86688411 | 86688289 | ID=Msa1133340-mRNA-1:five_prime_utr;Parent=Msa1133340-mRNA-1 |
| chr7_3 | CDS | 86688412 | 86688477 | 86688412 | ID=Msa1133340-mRNA-1:cds;Parent=Msa1133340-mRNA-1 |
| chr7_3 | CDS | 86688568 | 86689179 | 86688568 | ID=Msa1133340-mRNA-1:cds;Parent=Msa1133340-mRNA-1 |
| chr7_3 | CDS | 86689460 | 86689840 | 86689460 | ID=Msa1133340-mRNA-1:cds;Parent=Msa1133340-mRNA-1 |
| chr7_3 | CDS | 86690790 | 86690879 | 86690790 | ID=Msa1133340-mRNA-1:cds;Parent=Msa1133340-mRNA-1 |
| chr7_3 | three_prime_UTR | 86690880 | 86691050 | 86690880 | ID=Msa1133340-mRNA-1:three_prime_utr;Parent=Msa1133340-mRNA-1 |
| chr7_3 | three_prime_UTR | 86691198 | 86691423 | 86691198 | ID=Msa1133340-mRNA-1:three_prime_utr;Parent=Msa1133340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
