AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0511780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511780 MtrunA17_Chr3g0118321 95.583 566 24 1 1 565 1 566 0.0 1127
Msa0511780 MtrunA17_Chr3g0118331 86.549 565 76 0 1 565 1 565 0.0 1013
Msa0511780 MtrunA17_Chr3g0118351 81.065 338 40 2 251 565 1 337 0.0 569
Msa0511780 MtrunA17_Chr8g0382691 49.546 551 269 6 17 564 26 570 0.0 560
Msa0511780 MtrunA17_Chr3g0118341 85.128 195 28 1 1 194 1 195 5.07e-121 355
Msa0511780 MtrunA17_Chr5g0436461 32.682 563 318 17 6 544 7 532 1.00e-75 250
Msa0511780 MtrunA17_Chr5g0429511 33.865 564 319 20 4 545 6 537 4.52e-73 243
Msa0511780 MtrunA17_Chr5g0437681 30.465 581 331 18 1 544 1 545 2.31e-71 239
Msa0511780 MtrunA17_Chr7g0237491 32.696 575 316 17 7 542 14 556 2.58e-71 239
Msa0511780 MtrunA17_Chr5g0404361 31.634 569 327 19 1 544 58 589 5.09e-70 236
Msa0511780 MtrunA17_Chr7g0238351 33.160 576 320 20 2 540 8 555 1.44e-69 234
Msa0511780 MtrunA17_Chr5g0404341 30.976 594 338 22 1 561 12 566 2.10e-68 231
Msa0511780 MtrunA17_Chr3g0104061 33.272 541 316 16 22 545 23 535 3.42e-68 230
Msa0511780 MtrunA17_Chr7g0237441 32.056 574 323 18 4 540 11 554 4.53e-68 230
Msa0511780 MtrunA17_Chr3g0114211 31.005 587 333 23 2 554 12 560 7.34e-68 229
Msa0511780 MtrunA17_Chr7g0238941 30.449 601 334 20 7 561 16 578 1.73e-67 229
Msa0511780 MtrunA17_Chr5g0431581 31.194 561 329 18 9 541 4 535 7.01e-67 227
Msa0511780 MtrunA17_Chr2g0278811 32.818 582 321 24 12 544 25 585 1.05e-66 227
Msa0511780 MtrunA17_Chr4g0031901 32.790 552 299 23 25 540 44 559 5.40e-65 222
Msa0511780 MtrunA17_Chr7g0238981 30.660 561 338 14 21 553 43 580 4.25e-62 214
Msa0511780 MtrunA17_Chr8g0346581 30.144 554 315 21 25 544 34 549 1.97e-60 209
Msa0511780 MtrunA17_Chr7g0240991 28.720 578 341 21 7 544 3 549 9.61e-58 202
Msa0511780 MtrunA17_Chr7g0240971 28.098 573 324 23 18 544 18 548 2.79e-55 196
Msa0511780 MtrunA17_Chr8g0374271 27.828 557 336 17 25 565 31 537 2.98e-55 195
Msa0511780 MtrunA17_Chr4g0024861 28.187 557 329 17 25 562 27 531 1.03e-54 193
Msa0511780 MtrunA17_Chr4g0075071 28.242 563 327 18 25 565 31 538 1.78e-54 193
Msa0511780 MtrunA17_Chr3g0143671 27.692 585 342 22 6 565 9 537 1.19e-53 191
Msa0511780 MtrunA17_Chr4g0043251 26.910 576 357 20 7 562 7 538 2.68e-53 190
Msa0511780 MtrunA17_Chr4g0008521 28.546 557 331 16 24 544 25 550 3.68e-53 190
Msa0511780 MtrunA17_Chr8g0374261 27.528 534 315 18 48 562 52 532 9.66e-53 188
Msa0511780 MtrunA17_Chr5g0402831 28.853 558 320 20 25 562 31 531 2.12e-52 187
Msa0511780 MtrunA17_Chr3g0121151 28.007 582 340 23 7 562 49 577 3.84e-51 185
Msa0511780 MtrunA17_Chr3g0079321 26.958 549 341 16 37 562 41 552 1.08e-50 184
Msa0511780 MtrunA17_Chr3g0121161 27.778 576 349 21 7 562 49 577 1.16e-50 183
Msa0511780 MtrunA17_Chr1g0157341 26.863 577 345 20 11 562 9 533 2.63e-50 181
Msa0511780 MtrunA17_Chr4g0056511 27.837 564 337 18 27 562 29 550 3.19e-50 182
Msa0511780 MtrunA17_Chr3g0121171 28.366 557 333 20 26 562 27 537 9.79e-50 186
Msa0511780 MtrunA17_Chr3g0121171 27.778 576 349 21 7 562 584 1112 1.20e-49 185
Msa0511780 MtrunA17_Chr3g0121171 28.007 582 340 23 7 562 1159 1687 2.01e-48 181
Msa0511780 MtrunA17_Chr3g0121171 27.219 507 304 19 76 562 1792 2253 1.03e-43 167
Msa0511780 MtrunA17_Chr2g0322441 27.128 564 326 19 25 562 30 534 6.43e-49 177
Msa0511780 MtrunA17_Chr4g0038671 26.212 557 339 17 25 562 30 533 1.07e-48 177
Msa0511780 MtrunA17_Chr7g0234061 26.560 561 347 19 26 562 30 549 1.65e-46 172
Msa0511780 MtrunA17_Chr4g0043261 27.046 562 330 21 26 562 26 532 4.07e-45 167
Msa0511780 MtrunA17_Chr3g0118931 75.556 90 22 0 476 565 10 99 6.31e-45 154
Msa0511780 MtrunA17_Chr4g0005921 33.559 295 165 9 7 296 9 277 4.61e-37 144
Msa0511780 MtrunA17_Chr4g0005921 40.120 167 95 3 379 544 373 535 5.46e-29 121
Msa0511780 MtrunA17_Chr4g0024641 26.052 499 306 15 80 562 3 454 9.16e-37 146
Msa0511780 MtrunA17_Chr3g0133861 32.919 322 182 12 249 544 5 318 7.87e-33 128
Msa0511780 MtrunA17_Chr1g0197301 26.984 315 204 8 234 539 5 302 1.03e-27 114
Msa0511780 MtrunA17_Chr5g0436431 31.602 231 126 8 313 524 11 228 7.19e-21 91.7
Msa0511780 MtrunA17_Chr3g0133871 33.566 143 91 4 26 166 33 173 7.07e-18 82.8
Msa0511780 MtrunA17_Chr1g0197311 27.053 207 115 5 44 218 43 245 9.03e-15 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511780 AT5G21105.1 66.607 560 183 2 9 564 19 578 0.0 801
Msa0511780 AT5G21100.1 63.406 552 194 5 17 564 16 563 0.0 739
Msa0511780 AT5G21105.3 66.538 520 170 2 9 524 19 538 0.0 738
Msa0511780 AT4G39830.1 49.040 573 269 9 7 564 16 580 0.0 572
Msa0511780 AT5G21105.2 66.844 377 124 1 189 564 11 387 0.0 549
Msa0511780 AT4G39830.2 49.287 491 228 8 87 564 3 485 1.42e-168 488
Msa0511780 AT4G39830.3 49.284 489 227 8 89 564 3 483 6.36e-168 486
Msa0511780 AT4G39830.4 47.251 491 225 9 87 564 3 472 2.58e-155 453
Msa0511780 AT5G05390.1 29.604 581 334 17 1 544 1 543 7.81e-71 238
Msa0511780 AT5G58910.2 32.058 549 313 18 24 544 29 545 1.83e-67 229
Msa0511780 AT5G03260.1 30.796 565 331 19 7 545 6 536 1.01e-66 226
Msa0511780 AT5G58910.3 32.240 549 311 19 24 544 29 544 2.18e-66 226
Msa0511780 AT5G07130.1 32.062 577 329 19 1 544 1 547 4.02e-65 223
Msa0511780 AT5G48100.1 31.459 569 314 22 14 544 11 541 5.67e-64 219
Msa0511780 AT2G30210.1 30.127 551 334 13 21 544 22 548 6.16e-64 219
Msa0511780 AT2G29130.1 32.807 570 325 21 1 540 6 547 6.35e-64 219
Msa0511780 AT2G40370.1 28.693 589 344 17 1 544 1 558 1.89e-63 218
Msa0511780 AT2G46570.1 30.162 557 317 20 22 544 29 547 1.46e-62 216
Msa0511780 AT5G09360.1 30.556 576 328 19 1 544 12 547 1.78e-62 216
Msa0511780 AT1G18140.1 30.335 567 322 17 20 544 24 559 4.65e-62 214
Msa0511780 AT2G38080.1 31.695 590 331 22 8 561 5 558 5.45e-62 214
Msa0511780 AT5G01040.1 29.152 566 336 17 10 544 13 544 7.83e-62 214
Msa0511780 AT5G01050.1 29.101 567 337 17 10 544 13 546 9.12e-62 214
Msa0511780 AT3G09220.1 29.859 566 331 19 12 544 13 545 6.13e-59 206
Msa0511780 AT5G60020.1 30.450 578 335 20 1 540 3 551 2.08e-58 205
Msa0511780 AT5G01190.1 30.511 567 333 19 24 561 24 558 5.91e-58 203
Msa0511780 AT5G58910.1 30.957 533 301 19 40 544 8 501 1.72e-57 201
Msa0511780 AT1G55570.1 30.195 563 316 23 26 562 30 541 6.70e-57 200
Msa0511780 AT5G01190.2 30.769 546 317 19 45 561 31 544 1.30e-55 196
Msa0511780 AT5G60020.3 30.612 539 309 18 40 540 8 519 8.34e-55 194
Msa0511780 AT4G25240.2 29.642 587 345 22 4 563 7 552 1.21e-53 192
Msa0511780 AT4G25240.1 29.642 587 345 22 4 563 7 552 1.21e-53 192
Msa0511780 AT1G21860.1 28.147 572 336 17 16 565 16 534 1.35e-53 191
Msa0511780 AT4G22010.1 28.674 558 326 19 25 562 26 531 1.42e-53 191
Msa0511780 AT5G51480.1 28.342 561 340 21 27 563 30 552 4.78e-53 190
Msa0511780 AT3G13390.1 29.307 563 321 23 26 562 29 540 5.40e-53 189
Msa0511780 AT4G12420.1 27.080 565 346 19 27 565 27 551 1.14e-52 189
Msa0511780 AT4G12420.2 27.080 565 346 19 27 565 27 551 1.14e-52 189
Msa0511780 AT1G21850.1 27.979 579 347 20 4 562 3 531 1.14e-52 189
Msa0511780 AT1G75790.1 27.242 591 349 21 4 562 1 542 9.23e-52 186
Msa0511780 AT5G60020.2 30.035 566 321 23 1 524 3 535 4.92e-51 184
Msa0511780 AT1G76160.1 26.199 584 355 18 5 565 4 534 1.98e-50 182
Msa0511780 AT5G48450.2 25.907 579 361 17 9 562 8 543 2.43e-50 183
Msa0511780 AT5G48450.1 25.907 579 361 17 9 562 8 543 3.35e-50 183
Msa0511780 AT5G66920.1 26.996 526 322 15 25 539 37 511 2.06e-49 179
Msa0511780 AT2G23630.2 27.306 553 334 16 27 562 37 538 3.30e-49 179
Msa0511780 AT2G23630.1 27.306 553 334 16 27 562 32 533 5.23e-49 178
Msa0511780 AT2G46570.2 29.435 496 279 19 83 544 4 462 1.27e-48 176
Msa0511780 AT4G28090.1 27.568 584 342 22 9 565 9 538 1.07e-47 175
Msa0511780 AT4G37160.1 26.221 553 341 16 27 562 33 535 1.13e-47 174
Msa0511780 AT5G07130.2 31.134 485 277 16 91 544 4 462 3.58e-47 172
Msa0511780 AT5G07130.3 31.134 485 277 16 91 544 4 462 3.58e-47 172
Msa0511780 AT1G41830.1 24.567 578 358 18 7 562 11 532 9.96e-47 172
Msa0511780 AT3G13400.2 26.344 558 343 22 26 562 28 538 5.38e-42 159
Msa0511780 AT3G13400.1 26.344 558 343 22 26 562 28 538 5.38e-42 159
Msa0511780 AT1G55560.1 26.173 554 347 19 27 562 28 537 4.03e-41 156
Msa0511780 AT4G38420.1 24.912 566 348 18 25 565 30 543 1.77e-40 154
Msa0511780 AT3G09220.2 29.019 479 275 18 99 544 2 448 2.04e-40 153
Msa0511780 AT4G37160.2 26.395 466 282 14 27 480 33 449 9.68e-37 142
Msa0511780 AT4G38420.3 24.603 504 308 16 25 508 30 481 2.74e-31 127
Msa0511780 AT4G38420.2 24.790 476 287 15 25 480 30 454 4.43e-30 123

Find 159 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTAACTAGTCTCAATTT+TGG 0.160336 3_4:-61442951 None:intergenic
AAATCGGTAGTTTCACTAAA+TGG 0.163317 3_4:+61442365 Msa0511780:CDS
TATTTCTATCATGGACATTT+TGG 0.179942 3_4:+61437369 Msa0511780:CDS
CAAAATGCAAACCAGTTAAA+TGG 0.189861 3_4:+61442595 Msa0511780:CDS
CCGTTACCGGTAGTTGTATT+TGG 0.192418 3_4:-61442529 None:intergenic
TGCTCAGAGATTTAGTCTTT+TGG 0.198324 3_4:-61436604 None:intergenic
AAAACAAATCATTTCCAAAA+TGG 0.220018 3_4:+61442282 Msa0511780:CDS
TTGGACTGCATTAAGGTTTA+AGG 0.221108 3_4:+61442771 Msa0511780:CDS
CATATGGTTGGACTGCATTA+AGG 0.257525 3_4:+61442764 Msa0511780:CDS
TGTTCCCTAGCAGCTAAATA+TGG 0.261114 3_4:+61439093 Msa0511780:CDS
TGGCTGTGGAGTTCCCATTT+TGG 0.285078 3_4:-61442296 None:intergenic
CATGTTTCTCTTGTATAATT+AGG 0.285240 3_4:+61443078 Msa0511780:three_prime_UTR
GTAGTTGTATTTGGATTAAC+TGG 0.289880 3_4:-61442520 None:intergenic
TTTGTTTGGTGCATATGGTT+AGG 0.295869 3_4:+61436666 Msa0511780:CDS
CTTTCAAATTGCATTGTTGT+AGG 0.308083 3_4:-61439125 None:intergenic
AGGCAGATAACCCTGGTGTT+TGG 0.311229 3_4:+61442791 Msa0511780:CDS
CACTACCATTCCCATTTAAC+TGG 0.315490 3_4:-61442606 None:intergenic
GGCAGATAACCCTGGTGTTT+GGG 0.315629 3_4:+61442792 Msa0511780:CDS
TTGGCTCCACATGAAGAATC+TGG 0.317779 3_4:-61439167 None:intergenic
AATGGCTCTCTTTGTTCCTT+TGG 0.323053 3_4:-61437438 None:intergenic
TGGCTTTCAATCGGTGTTAG+AGG 0.333330 3_4:+61442130 Msa0511780:CDS
CATTGAACCACATTTGCATA+TGG 0.333948 3_4:+61442828 Msa0511780:CDS
CTGAGGCTGTTCATAAAGTT+AGG 0.336809 3_4:+61442869 Msa0511780:CDS
CACCACCAATCACTCCATTA+TGG 0.340064 3_4:+61442230 Msa0511780:CDS
GGAATCAATGGCCAGTTTCC+AGG 0.342868 3_4:+61436783 Msa0511780:CDS
GTTCACCAATCCATCTCATT+GGG 0.346982 3_4:-61437545 None:intergenic
TGTGAATGCTTTGCTATGTT+TGG 0.349636 3_4:-61442260 None:intergenic
TAATAGTTGGGCCTGGAAAC+TGG 0.350475 3_4:-61436794 None:intergenic
GTTAGGGCTTGTGGTGTGTT+TGG 0.350530 3_4:-61442160 None:intergenic
TAGGGTCTTGGTCTGTTGTA+AGG 0.352588 3_4:-61442096 None:intergenic
TAAATTTGCATGGATGTTAA+TGG 0.367515 3_4:+61443228 Msa0511780:three_prime_UTR
TTGTTTGGTGCATATGGTTA+GGG 0.369163 3_4:+61436667 Msa0511780:CDS
GAAGCATAATCAACGAATAA+AGG 0.375529 3_4:+61443194 Msa0511780:three_prime_UTR
AAACGTGTAAACACCGTTAC+CGG 0.380846 3_4:-61442542 None:intergenic
TTAACTTCAGCTTTAATAGT+TGG 0.382060 3_4:-61436807 None:intergenic
ACTAGCAATCCTTATTCTAT+AGG 0.382362 3_4:-61439196 None:intergenic
TGTAAGATATCATCACTTCA+TGG 0.385080 3_4:+61443025 Msa0511780:three_prime_UTR
TAACTTCAGCTTTAATAGTT+GGG 0.385140 3_4:-61436806 None:intergenic
AAACACTCGGAGGAAATTAA+TGG 0.388554 3_4:-61442984 None:intergenic
AACTCCCCGCGTGAATAATT+AGG 0.390745 3_4:+61443111 Msa0511780:three_prime_UTR
CCACACTTAAGAGCTTCTTT+AGG 0.398032 3_4:-61442898 None:intergenic
GAAGGATTGTATGTATATAT+AGG 0.401269 3_4:-61436552 None:intergenic
CTGTATTGAAAAGTTTCTCC+TGG 0.402941 3_4:-61437068 None:intergenic
TTTGCAGTTTGGAACTCCTT+GGG 0.403133 3_4:+61437007 Msa0511780:intron
ACAACATGCTCCACACAATC+TGG 0.411894 3_4:-61436756 None:intergenic
CTCAATACACAAAACAAAAT+CGG 0.415806 3_4:+61442349 Msa0511780:CDS
AAACAAATCATTTCCAAAAT+GGG 0.418944 3_4:+61442283 Msa0511780:CDS
TGTTTGGTATCATTCCATAA+TGG 0.420105 3_4:-61442244 None:intergenic
TTTGGAACTCCTTGGGCTGA+TGG 0.420214 3_4:+61437014 Msa0511780:CDS
ACTGCAGTTATATTTCCATA+TGG 0.422579 3_4:+61442748 Msa0511780:CDS
AATACAGATTCAAAGTTGAC+AGG 0.425137 3_4:+61437084 Msa0511780:CDS
TAATTATTCACGCGGGGAGT+TGG 0.426379 3_4:-61443109 None:intergenic
GTGATTGGTGGTGGTAATGT+TGG 0.428911 3_4:-61442220 None:intergenic
ATTTGACACGTGCACCTTTG+AGG 0.429330 3_4:+61442722 Msa0511780:CDS
AACTCACCATCATAATGAAA+TGG 0.432896 3_4:-61437456 None:intergenic
CTTAATGCAGTCCAACCATA+TGG 0.434255 3_4:-61442763 None:intergenic
GGTTCACCAATCCATCTCAT+TGG 0.437708 3_4:-61437546 None:intergenic
AATTTGATTGATCCTAAGTA+AGG 0.437892 3_4:-61442424 None:intergenic
AATCGGTAGTTTCACTAAAT+GGG 0.438520 3_4:+61442366 Msa0511780:CDS
GTTTGCAGTTTGGAACTCCT+TGG 0.444823 3_4:+61437006 Msa0511780:intron
TTAAGGATTGTTAGGGCTTG+TGG 0.446548 3_4:-61442169 None:intergenic
AAAATGCAAACCAGTTAAAT+GGG 0.447011 3_4:+61442596 Msa0511780:CDS
GAATAACAGTTCCCTCTGTA+TGG 0.447128 3_4:-61436863 None:intergenic
CAAAGAGCAGCAGGGCTGTA+TGG 0.448009 3_4:+61437396 Msa0511780:CDS
CAGTTATATTTCCATATGGT+TGG 0.450338 3_4:+61442752 Msa0511780:CDS
AGAGAGCCATTTCATTATGA+TGG 0.456007 3_4:+61437450 Msa0511780:CDS
GATGTCATTTAGGAATATCT+AGG 0.458902 3_4:-61442929 None:intergenic
TAGGAGAAAACTCACTGAAA+TGG 0.458974 3_4:-61439247 None:intergenic
TTGCCAACCACACCTTACTT+AGG 0.459014 3_4:+61442412 Msa0511780:CDS
CAAATTGCATTGTTGTAGGT+TGG 0.462781 3_4:-61439121 None:intergenic
TGGCTCCACATGAAGAATCT+GGG 0.463007 3_4:-61439166 None:intergenic
TCATTCCATAATGGAGTGAT+TGG 0.463471 3_4:-61442235 None:intergenic
TTAAATATGTCATAATCCAT+TGG 0.467428 3_4:-61442493 None:intergenic
ATTGAACCACATTTGCATAT+GGG 0.467926 3_4:+61442829 Msa0511780:CDS
TTTGTAGTTAAGGATTGTTA+GGG 0.470399 3_4:-61442176 None:intergenic
TTTGGTATGCAAAGAGCAGC+AGG 0.470698 3_4:+61437387 Msa0511780:CDS
GATTGCTAGTACAACGTCCT+TGG 0.477486 3_4:+61439209 Msa0511780:CDS
CCTGGTACATATTTCTATCA+TGG 0.478578 3_4:+61437360 Msa0511780:CDS
TAATCCATTGGAAATCTCTC+TGG 0.486255 3_4:-61442481 None:intergenic
GTTCCCTAGCAGCTAAATAT+GGG 0.491107 3_4:+61439094 Msa0511780:CDS
CAATGGAATGCCCAAACACC+AGG 0.492231 3_4:-61442802 None:intergenic
TCAGCTTTAATAGTTGGGCC+TGG 0.499380 3_4:-61436801 None:intergenic
TGTGAGGATTTCGGTGGCTG+TGG 0.503552 3_4:-61442310 None:intergenic
GTCCTTGGCTTCTCTCAACT+TGG 0.507159 3_4:+61439224 Msa0511780:CDS
TCTATAAATGAAATGAAAGA+AGG 0.511625 3_4:-61436570 None:intergenic
ATCGTGCGGTGTGAGGATTT+CGG 0.515283 3_4:-61442319 None:intergenic
TCAGCCCCAATGAGATGGAT+TGG 0.516747 3_4:+61437540 Msa0511780:CDS
GCTGTATGGTTCTCTAATAG+TGG 0.517469 3_4:+61437410 Msa0511780:CDS
ACCACATTTGCATATGGGAA+TGG 0.518745 3_4:+61442834 Msa0511780:CDS
ATTGGAAATCTCTCTGGTGG+TGG 0.520673 3_4:-61442475 None:intergenic
TGATTGGTGGTGGTAATGTT+GGG 0.522150 3_4:-61442219 None:intergenic
ATCTGCTCCTTAGTGATCTG+TGG 0.529687 3_4:+61437481 Msa0511780:CDS
CCAAATACAACTACCGGTAA+CGG 0.532128 3_4:+61442529 Msa0511780:CDS
TCTCTTCAGCCCCAATGAGA+TGG 0.532184 3_4:+61437535 Msa0511780:CDS
CAGAGGGAACTGTTATTCAC+TGG 0.535040 3_4:+61436868 Msa0511780:CDS
GTTAATCCAAATACAACTAC+CGG 0.535206 3_4:+61442523 Msa0511780:CDS
TGCTCCCATATTTAGCTGCT+AGG 0.538328 3_4:-61439098 None:intergenic
TCTCAGTGTGCTATAAATCC+AGG 0.546219 3_4:+61437050 Msa0511780:CDS
GCAAACCAGTTAAATGGGAA+TGG 0.548393 3_4:+61442601 Msa0511780:CDS
GCTCCCATATTTAGCTGCTA+GGG 0.548844 3_4:-61439097 None:intergenic
CCACATTTGCATATGGGAAT+GGG 0.550546 3_4:+61442835 Msa0511780:CDS
CCCATTCCCATATGCAAATG+TGG 0.553246 3_4:-61442835 None:intergenic
GAATCACAAACTTATTGTAG+TGG 0.555571 3_4:+61441997 Msa0511780:intron
ATTCATCCATGGCATTTGCA+TGG 0.556495 3_4:+61442631 Msa0511780:CDS
CATGTTGTGATGGGAATCAA+TGG 0.556686 3_4:+61436771 Msa0511780:CDS
CGATGTCATCGACTGCGAAT+GGG 0.556689 3_4:-61442042 None:intergenic
CTACAACAATGCAATTTGAA+AGG 0.558037 3_4:+61439126 Msa0511780:CDS
CTTATTGTAGTGGAAGCTGA+TGG 0.558234 3_4:+61442007 Msa0511780:CDS
GGAACTGTTATTCACTGGCA+TGG 0.565221 3_4:+61436873 Msa0511780:CDS
TCGATGTCATCGACTGCGAA+TGG 0.565381 3_4:-61442043 None:intergenic
CCATGATAGAAATATGTACC+AGG 0.570980 3_4:-61437360 None:intergenic
TTGTGTGGAGCATGTTGTGA+TGG 0.577399 3_4:+61436761 Msa0511780:CDS
GATCCTAAGTAAGGTGTGGT+TGG 0.579576 3_4:-61442415 None:intergenic
GGCCAAGTTGAGAGAAGCCA+AGG 0.580752 3_4:-61439226 None:intergenic
ATCTCATTGGGGCTGAAGAG+AGG 0.581211 3_4:-61437533 None:intergenic
ACCACCAGAGAGATTTCCAA+TGG 0.581481 3_4:+61442477 Msa0511780:CDS
TTACACGTTTCAGTTAAATG+AGG 0.582919 3_4:+61442555 Msa0511780:CDS
TCTAATAGTGGATTTACCAA+AGG 0.582956 3_4:+61437422 Msa0511780:CDS
GAGATGGATTGGTGAACCAC+AGG 0.584866 3_4:+61437551 Msa0511780:CDS
ATAACTGCAGTGTTCCTCAA+AGG 0.587942 3_4:-61442736 None:intergenic
TCACTGGCATGGAATCAGAC+AGG 0.589797 3_4:+61436884 Msa0511780:CDS
TGTTGTAAGGAGGACTGAGT+AGG 0.590002 3_4:-61442083 None:intergenic
GATAAAGTGATAAATTTGCA+TGG 0.593244 3_4:+61443218 Msa0511780:three_prime_UTR
CACAAGCTCACATGAACAAG+AGG 0.595059 3_4:+61437506 Msa0511780:CDS
CTGTATGGAGCTTGTTCGTG+AGG 0.597737 3_4:-61436848 None:intergenic
GAGGAGAATCGTGCGGTGTG+AGG 0.599110 3_4:-61442326 None:intergenic
TGTGTGGAGCATGTTGTGAT+GGG 0.602225 3_4:+61436762 Msa0511780:CDS
TGCACCCCAGATTCTTCATG+TGG 0.602253 3_4:+61439161 Msa0511780:CDS
GGCTCCACATGAAGAATCTG+GGG 0.602686 3_4:-61439165 None:intergenic
TTCCATAATGGAGTGATTGG+TGG 0.606846 3_4:-61442232 None:intergenic
AGGTTTAAGGCAGATAACCC+TGG 0.609626 3_4:+61442784 Msa0511780:CDS
CAACAATGCAATTTGAAAGG+TGG 0.612313 3_4:+61439129 Msa0511780:CDS
TCATGTCCATGCAAATGCCA+TGG 0.613062 3_4:-61442637 None:intergenic
ATACAGATTCAAAGTTGACA+GGG 0.614232 3_4:+61437085 Msa0511780:CDS
TTGTGTGCCACAGATCACTA+AGG 0.616013 3_4:-61437488 None:intergenic
GGTCTTGGTCTGTTGTAAGG+AGG 0.616462 3_4:-61442093 None:intergenic
AGCTCACATGAACAAGAGGT+TGG 0.616753 3_4:+61437510 Msa0511780:CDS
CATAATGGAGTGATTGGTGG+TGG 0.616987 3_4:-61442229 None:intergenic
ACTCGGAGGAAATTAATGGT+TGG 0.619402 3_4:-61442980 None:intergenic
AGCTTGCTCATCAATGGACG+AGG 0.623207 3_4:+61439060 Msa0511780:CDS
GATGACATCGACATCTACTC+AGG 0.624507 3_4:+61442055 Msa0511780:CDS
TCCATTGGAAATCTCTCTGG+TGG 0.626333 3_4:-61442478 None:intergenic
CCTAAAGAAGCTCTTAAGTG+TGG 0.626917 3_4:+61442898 Msa0511780:CDS
ATGGTAGTGAAATTCATCCA+TGG 0.631220 3_4:+61442620 Msa0511780:CDS
TTCACCAATCCATCTCATTG+GGG 0.642456 3_4:-61437544 None:intergenic
GCAGCAGTTCCATCAGCCCA+AGG 0.643166 3_4:-61437023 None:intergenic
ACGAACAAGCTCCATACAGA+GGG 0.648620 3_4:+61436852 Msa0511780:CDS
CACGAACAAGCTCCATACAG+AGG 0.651295 3_4:+61436851 Msa0511780:CDS
TTGGTATGCAAAGAGCAGCA+GGG 0.660158 3_4:+61437388 Msa0511780:CDS
AATGTGGTTCAATGTGACAA+TGG 0.664380 3_4:-61442819 None:intergenic
AATGACCTAATTATTCACGC+GGG 0.665669 3_4:-61443116 None:intergenic
GATTGATCCTAAGTAAGGTG+TGG 0.679397 3_4:-61442419 None:intergenic
AAATGACCTAATTATTCACG+CGG 0.693941 3_4:-61443117 None:intergenic
ATGACCTAATTATTCACGCG+GGG 0.695172 3_4:-61443115 None:intergenic
GTGCGGTGTGAGGATTTCGG+TGG 0.702906 3_4:-61442316 None:intergenic
AATGGAATGCCCAAACACCA+GGG 0.708938 3_4:-61442801 None:intergenic
GGTGAAGGGAGATTTAGACC+AGG 0.724991 3_4:+61442679 Msa0511780:CDS
TATTGAGGAGGAGAATCGTG+CGG 0.763434 3_4:-61442333 None:intergenic
TGGTAATGTTGGGAAAACTG+AGG 0.794108 3_4:-61442209 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATATATATAATATTAAC+TGG + chr3_4:61437316-61437335 Msa0511780:intron 10.0%
!! TAGAAATAAAAATTGAAAAT+TGG + chr3_4:61438260-61438279 Msa0511780:intron 10.0%
!! AGAAATAAAAATTGAAAATT+GGG + chr3_4:61438261-61438280 Msa0511780:intron 10.0%
!!! AATTTTTCTACTTTTTTTTT+TGG + chr3_4:61438637-61438656 Msa0511780:intron 10.0%
!! GATATTTAAAAAAGAATAAA+TGG - chr3_4:61439859-61439878 None:intergenic 10.0%
!!! TATCATATTTTTTTTTTTTG+TGG + chr3_4:61439875-61439894 Msa0511780:intron 10.0%
!!! TTTATAGAATTATTTTTTGT+TGG - chr3_4:61440235-61440254 None:intergenic 10.0%
!!! AGTTTTTTTCATATTTTTTT+TGG + chr3_4:61440905-61440924 Msa0511780:intron 10.0%
!! TAATGAAAAAATTTATCATA+TGG - chr3_4:61440996-61441015 None:intergenic 10.0%
!! TCATATATAAAATATCAAAT+TGG - chr3_4:61441299-61441318 None:intergenic 10.0%
!!! GTTTTATTAAAAATGTTATT+TGG - chr3_4:61441573-61441592 None:intergenic 10.0%
!!! CATTTTTAATAAAACTTAAA+AGG + chr3_4:61441578-61441597 Msa0511780:intron 10.0%
!! ATATTTAATTATAACTAGAC+TGG - chr3_4:61436951-61436970 None:intergenic 15.0%
!! TATATAATATAATTAGAGCT+AGG + chr3_4:61437293-61437312 Msa0511780:intron 15.0%
!! TATATATAATATTAACTGGT+TGG + chr3_4:61437320-61437339 Msa0511780:intron 15.0%
!!! TTTTAAAGCATAATAACTTT+TGG + chr3_4:61438026-61438045 Msa0511780:intron 15.0%
!! CTTAAAAAAAAAATATGAAC+TGG + chr3_4:61438610-61438629 Msa0511780:intron 15.0%
!! TTGTCTTGATTAAAATTTAA+AGG - chr3_4:61438760-61438779 None:intergenic 15.0%
!!! AGTATTATTTTTCATTCTTT+TGG + chr3_4:61438877-61438896 Msa0511780:intron 15.0%
!! ACTATATTATCATTCATAAA+AGG - chr3_4:61439019-61439038 None:intergenic 15.0%
!!! TATTTTGCATATCATTATTA+GGG + chr3_4:61439386-61439405 Msa0511780:intron 15.0%
!!! TTGAAAAAATGTTTTAGATA+TGG + chr3_4:61439686-61439705 Msa0511780:intron 15.0%
!!! CAAATATATAAGGTTTTTTT+TGG - chr3_4:61441721-61441740 None:intergenic 15.0%
!! TCTATAAATGAAATGAAAGA+AGG - chr3_4:61436573-61436592 None:intergenic 20.0%
!! ACATCATATTCATATGAAAA+AGG - chr3_4:61438179-61438198 None:intergenic 20.0%
!! ATTAGGAATTATTAGGTATT+AGG - chr3_4:61438315-61438334 None:intergenic 20.0%
!! AAAAAAAAAATTGACAAGTG+GGG - chr3_4:61438547-61438566 None:intergenic 20.0%
!! GAAAAAAAAAATTGACAAGT+GGG - chr3_4:61438548-61438567 None:intergenic 20.0%
!! TGAAAAAAAAAATTGACAAG+TGG - chr3_4:61438549-61438568 None:intergenic 20.0%
!! AAATGTAAGTTAATATGAAC+TGG + chr3_4:61438709-61438728 Msa0511780:intron 20.0%
!! ACATATATCATATATGTAGT+GGG - chr3_4:61439280-61439299 None:intergenic 20.0%
!! AACATATATCATATATGTAG+TGG - chr3_4:61439281-61439300 None:intergenic 20.0%
!!! CTATTTTGCATATCATTATT+AGG + chr3_4:61439385-61439404 Msa0511780:intron 20.0%
!!! CAATTGATTCCTTTTTTATT+TGG - chr3_4:61439518-61439537 None:intergenic 20.0%
!! GAAAACGAATGAAATAATTT+AGG + chr3_4:61439590-61439609 Msa0511780:intron 20.0%
!! ATCGTAGGAATTAAAAATTA+AGG + chr3_4:61439758-61439777 Msa0511780:intron 20.0%
!!! TTTAACTTCAATACTTTGTA+AGG + chr3_4:61439807-61439826 Msa0511780:intron 20.0%
!!! GAAAAAACTTTAACTTCAAT+AGG + chr3_4:61439829-61439848 Msa0511780:intron 20.0%
!! TGTTCAATTAGTTGTTATAT+TGG + chr3_4:61440053-61440072 Msa0511780:intron 20.0%
!! TTCATCATTATCACATTTAA+AGG - chr3_4:61440282-61440301 None:intergenic 20.0%
!!! TTAAATGTGATAATGATGAA+CGG + chr3_4:61440282-61440301 Msa0511780:intron 20.0%
!! AACTTCATGTAATATACTAT+AGG - chr3_4:61441034-61441053 None:intergenic 20.0%
!!! ACTATAACATTACTTTGTTT+TGG + chr3_4:61441097-61441116 Msa0511780:intron 20.0%
!! TGAATTAAATATTGTCTCAT+TGG + chr3_4:61441362-61441381 Msa0511780:intron 20.0%
!!! AACAATCACTATTTTAAGTT+GGG - chr3_4:61441783-61441802 None:intergenic 20.0%
!!! AAACAATCACTATTTTAAGT+TGG - chr3_4:61441784-61441803 None:intergenic 20.0%
!!! CATTTAGATTTAGAATATCT+TGG - chr3_4:61441823-61441842 None:intergenic 20.0%
!! TGAAATAATGAATCAATCTA+TGG - chr3_4:61441941-61441960 None:intergenic 20.0%
!! TGAAACAAACAAAAATTATG+GGG - chr3_4:61441977-61441996 None:intergenic 20.0%
!! CTGAAACAAACAAAAATTAT+GGG - chr3_4:61441978-61441997 None:intergenic 20.0%
!!! TCTGAAACAAACAAAAATTA+TGG - chr3_4:61441979-61441998 None:intergenic 20.0%
!! AAAACAAATCATTTCCAAAA+TGG + chr3_4:61442282-61442301 Msa0511780:CDS 20.0%
!! AAACAAATCATTTCCAAAAT+GGG + chr3_4:61442283-61442302 Msa0511780:CDS 20.0%
!! TTAAATATGTCATAATCCAT+TGG - chr3_4:61442496-61442515 None:intergenic 20.0%
!!! TAATTAACTAGTCTCAATTT+TGG - chr3_4:61442954-61442973 None:intergenic 20.0%
! GAAGGATTGTATGTATATAT+AGG - chr3_4:61436555-61436574 None:intergenic 25.0%
!! TAACTTCAGCTTTAATAGTT+GGG - chr3_4:61436809-61436828 None:intergenic 25.0%
!! TTAACTTCAGCTTTAATAGT+TGG - chr3_4:61436810-61436829 None:intergenic 25.0%
!!! TATTTCTATCATGGACATTT+TGG + chr3_4:61437369-61437388 Msa0511780:CDS 25.0%
! AGTGTAAAAGTTTCTTTACA+AGG - chr3_4:61437751-61437770 None:intergenic 25.0%
!!! AGTTTTAAAGTTGTCATGAT+CGG + chr3_4:61437868-61437887 Msa0511780:intron 25.0%
!!! TCACAAATAAAGAGTATCAT+TGG - chr3_4:61438129-61438148 None:intergenic 25.0%
!! CTTTCAAGAATTTTATTGTC+TGG - chr3_4:61438216-61438235 None:intergenic 25.0%
! TTATTAGGTATTAGGTGAAT+GGG - chr3_4:61438307-61438326 None:intergenic 25.0%
! ATTATTAGGTATTAGGTGAA+TGG - chr3_4:61438308-61438327 None:intergenic 25.0%
! TACCTAATAATTCCTAATAG+TGG + chr3_4:61438317-61438336 Msa0511780:intron 25.0%
! ATTGATATTATGCCACTATT+AGG - chr3_4:61438332-61438351 None:intergenic 25.0%
! GAGAATTGTTAGGTATTATT+AGG - chr3_4:61438356-61438375 None:intergenic 25.0%
!! TCGTTGGAATTTTTCTATAA+TGG + chr3_4:61438501-61438520 Msa0511780:intron 25.0%
! AAAAAAAAATTGACAAGTGG+GGG - chr3_4:61438546-61438565 None:intergenic 25.0%
! AAGACAATAGAAATATGAAC+TGG + chr3_4:61438583-61438602 Msa0511780:intron 25.0%
! TACTATTCCATTATCTTTCT+TGG - chr3_4:61438861-61438880 None:intergenic 25.0%
!! TCTTTTGGTAAATGTACAAT+TGG + chr3_4:61438892-61438911 Msa0511780:intron 25.0%
!!! CTTATTCTATAGGTCTTTTT+TGG - chr3_4:61439189-61439208 None:intergenic 25.0%
! CAAAAAAGACCTATAGAATA+AGG + chr3_4:61439187-61439206 Msa0511780:CDS 25.0%
! AATTGAGATGAGCATATATT+TGG - chr3_4:61439435-61439454 None:intergenic 25.0%
!!! TGATTCCTTTTTTATTTGGT+GGG - chr3_4:61439514-61439533 None:intergenic 25.0%
!!! TTGATTCCTTTTTTATTTGG+TGG - chr3_4:61439515-61439534 None:intergenic 25.0%
!!! TTACTTTTAAGAGGAAATTC+CGG + chr3_4:61439546-61439565 Msa0511780:intron 25.0%
! TGAATTAGACTATTAATCTC+CGG - chr3_4:61439568-61439587 None:intergenic 25.0%
! GAGATTAATAGTCTAATTCA+TGG + chr3_4:61439568-61439587 Msa0511780:intron 25.0%
! ATGAAATAATTTAGGAACAG+TGG + chr3_4:61439598-61439617 Msa0511780:intron 25.0%
! TGAAATAATTTAGGAACAGT+GGG + chr3_4:61439599-61439618 Msa0511780:intron 25.0%
! GTAAGAAAAACTTCACTAAT+AGG + chr3_4:61439639-61439658 Msa0511780:intron 25.0%
!!! TATTTTTTTTTTTTGTGGCC+AGG + chr3_4:61439880-61439899 Msa0511780:intron 25.0%
!!! ATTTTTTTTTTTTGTGGCCA+GGG + chr3_4:61439881-61439900 Msa0511780:intron 25.0%
! TGCATAATATATACAAGGTT+CGG - chr3_4:61439914-61439933 None:intergenic 25.0%
! GACAATGCATAATATATACA+AGG - chr3_4:61439919-61439938 None:intergenic 25.0%
! ATAAAGCCAAATGTTAGTAT+AGG + chr3_4:61440027-61440046 Msa0511780:intron 25.0%
! TCAATTAGTTGTTATATTGG+AGG + chr3_4:61440056-61440075 Msa0511780:intron 25.0%
! CAATTAGTTGTTATATTGGA+GGG + chr3_4:61440057-61440076 Msa0511780:intron 25.0%
! AATTAGTTGTTATATTGGAG+GGG + chr3_4:61440058-61440077 Msa0511780:intron 25.0%
! ATACATTCAAATACATGAAG+CGG + chr3_4:61440207-61440226 Msa0511780:intron 25.0%
!!! TCTTTTCCTTATTTTATACG+AGG - chr3_4:61440410-61440429 None:intergenic 25.0%
! ACCAAATTTATGTCTATAGA+AGG + chr3_4:61440504-61440523 Msa0511780:intron 25.0%
! TCCTTCTATAGACATAAATT+TGG - chr3_4:61440508-61440527 None:intergenic 25.0%
!!! AAATGTTAAACAGTTCTGAA+AGG + chr3_4:61440639-61440658 Msa0511780:intron 25.0%
! TATTTCAACAAAAAGAGAAG+TGG - chr3_4:61440777-61440796 None:intergenic 25.0%
!! TTAGTCATGCATTTCATTTT+TGG - chr3_4:61440809-61440828 None:intergenic 25.0%
! TGCATCAACAAAAATGAATA+TGG - chr3_4:61441164-61441183 None:intergenic 25.0%
! TTAAATATTGTCTCATTGGT+TGG + chr3_4:61441366-61441385 Msa0511780:intron 25.0%
! AACTTCACGTTAAATTGTTT+AGG + chr3_4:61441405-61441424 Msa0511780:intron 25.0%
! GAAAAGTTGAATTTAAACCT+TGG + chr3_4:61441427-61441446 Msa0511780:intron 25.0%
! GTTAAGAAGGCAAATATATA+AGG - chr3_4:61441731-61441750 None:intergenic 25.0%
! TTTGTAGTTAAGGATTGTTA+GGG - chr3_4:61442179-61442198 None:intergenic 25.0%
!! TTTTGTAGTTAAGGATTGTT+AGG - chr3_4:61442180-61442199 None:intergenic 25.0%
! CTCAATACACAAAACAAAAT+CGG + chr3_4:61442349-61442368 Msa0511780:CDS 25.0%
! AATTTGATTGATCCTAAGTA+AGG - chr3_4:61442427-61442446 None:intergenic 25.0%
! AAAATGCAAACCAGTTAAAT+GGG + chr3_4:61442596-61442615 Msa0511780:CDS 25.0%
! AAGAAAGAAAGAAAAACACT+CGG - chr3_4:61443000-61443019 None:intergenic 25.0%
! CATGTTTCTCTTGTATAATT+AGG + chr3_4:61443078-61443097 Msa0511780:three_prime_UTR 25.0%
! GATAAAGTGATAAATTTGCA+TGG + chr3_4:61443218-61443237 Msa0511780:three_prime_UTR 25.0%
! TAAATTTGCATGGATGTTAA+TGG + chr3_4:61443228-61443247 Msa0511780:three_prime_UTR 25.0%
!! AGGTAAATTCTTAGTTCTAG+TGG + chr3_4:61436904-61436923 Msa0511780:intron 30.0%
TTATAACTAGACTGGTACTT+TGG - chr3_4:61436943-61436962 None:intergenic 30.0%
CTGTAAAAATGTTTGCAGTT+TGG + chr3_4:61436996-61437015 Msa0511780:intron 30.0%
AATACAGATTCAAAGTTGAC+AGG + chr3_4:61437084-61437103 Msa0511780:CDS 30.0%
ATACAGATTCAAAGTTGACA+GGG + chr3_4:61437085-61437104 Msa0511780:CDS 30.0%
AATTAATCAACATGTAGCAG+TGG - chr3_4:61437171-61437190 None:intergenic 30.0%
AACAAAAGAAAAACCATTGC+TGG - chr3_4:61437233-61437252 None:intergenic 30.0%
!! TAACTGGTTGGTGTTAAATA+TGG + chr3_4:61437332-61437351 Msa0511780:intron 30.0%
!! TCTAATAGTGGATTTACCAA+AGG + chr3_4:61437422-61437441 Msa0511780:CDS 30.0%
AACTCACCATCATAATGAAA+TGG - chr3_4:61437459-61437478 None:intergenic 30.0%
! AAAAGTTGAAAGTATACCTG+TGG - chr3_4:61437570-61437589 None:intergenic 30.0%
TGCCACTATTAGGAATTATT+AGG - chr3_4:61438322-61438341 None:intergenic 30.0%
! TTGATTCTGAGAGAATTGTT+AGG - chr3_4:61438366-61438385 None:intergenic 30.0%
CAACGATGATTTGATGAAAT+GGG - chr3_4:61438487-61438506 None:intergenic 30.0%
!!! AGCTTTATTTTGACGCAAAA+AGG + chr3_4:61438927-61438946 Msa0511780:intron 30.0%
!!! GCTTTATTTTGACGCAAAAA+GGG + chr3_4:61438928-61438947 Msa0511780:intron 30.0%
CTTTCAAATTGCATTGTTGT+AGG - chr3_4:61439128-61439147 None:intergenic 30.0%
CTACAACAATGCAATTTGAA+AGG + chr3_4:61439126-61439145 Msa0511780:CDS 30.0%
ACTAGCAATCCTTATTCTAT+AGG - chr3_4:61439199-61439218 None:intergenic 30.0%
ATAGACACACACAAACTAAT+TGG - chr3_4:61439369-61439388 None:intergenic 30.0%
CATCTCAATTATCACCATTT+AGG + chr3_4:61439445-61439464 Msa0511780:intron 30.0%
!!! TTTTTTATTTGGTGGGAACA+AGG - chr3_4:61439507-61439526 None:intergenic 30.0%
TTGTTCCCACCAAATAAAAA+AGG + chr3_4:61439506-61439525 Msa0511780:intron 30.0%
AAAAAGGAATCAATTGTCGA+AGG + chr3_4:61439522-61439541 Msa0511780:intron 30.0%
GCATAATATATACAAGGTTC+GGG - chr3_4:61439913-61439932 None:intergenic 30.0%
ACATCTCCTATACTAACATT+TGG - chr3_4:61440036-61440055 None:intergenic 30.0%
ATTAGTTGTTATATTGGAGG+GGG + chr3_4:61440059-61440078 Msa0511780:intron 30.0%
! AATTGTCGCATCAATTGTTT+TGG + chr3_4:61440117-61440136 Msa0511780:intron 30.0%
!!! GCAATTCTGATTGTTTTGAT+TGG + chr3_4:61440162-61440181 Msa0511780:intron 30.0%
CATGCATGTATGATAAAATG+GGG - chr3_4:61440556-61440575 None:intergenic 30.0%
GCATGCATGTATGATAAAAT+GGG - chr3_4:61440557-61440576 None:intergenic 30.0%
TGCATGCATGTATGATAAAA+TGG - chr3_4:61440558-61440577 None:intergenic 30.0%
AAAAATAACTGCTATGAGAG+AGG - chr3_4:61440866-61440885 None:intergenic 30.0%
AGTTGAATTTAAACCTTGGT+TGG + chr3_4:61441431-61441450 Msa0511780:intron 30.0%
TAAAATCTAACAACCAACCA+AGG - chr3_4:61441447-61441466 None:intergenic 30.0%
ACAATCTGACTATCCAATTA+TGG + chr3_4:61441470-61441489 Msa0511780:intron 30.0%
CAATCTGACTATCCAATTAT+GGG + chr3_4:61441471-61441490 Msa0511780:intron 30.0%
AATCTGACTATCCAATTATG+GGG + chr3_4:61441472-61441491 Msa0511780:intron 30.0%
ACAAGTTAAGGATCTTCAAA+TGG + chr3_4:61441627-61441646 Msa0511780:intron 30.0%
AATCTAAATGCATGATGCTT+TGG + chr3_4:61441833-61441852 Msa0511780:intron 30.0%
ATCTAAATGCATGATGCTTT+GGG + chr3_4:61441834-61441853 Msa0511780:intron 30.0%
TGCAATTCAAGGAATGATAT+GGG - chr3_4:61441918-61441937 None:intergenic 30.0%
GAATCACAAACTTATTGTAG+TGG + chr3_4:61441997-61442016 Msa0511780:intron 30.0%
!!! AAAGCCAGTAGTTTTTTGTA+GGG - chr3_4:61442117-61442136 None:intergenic 30.0%
!! AAAAACTACTGGCTTTCAAT+CGG + chr3_4:61442121-61442140 Msa0511780:CDS 30.0%
!! CAGAGATTGTTTTGTAGTTA+AGG - chr3_4:61442189-61442208 None:intergenic 30.0%
TGTTTGGTATCATTCCATAA+TGG - chr3_4:61442247-61442266 None:intergenic 30.0%
!!! TTTTGTTTTGTGTATTGAGG+AGG - chr3_4:61442348-61442367 None:intergenic 30.0%
!!! CGATTTTGTTTTGTGTATTG+AGG - chr3_4:61442351-61442370 None:intergenic 30.0%
AAATCGGTAGTTTCACTAAA+TGG + chr3_4:61442365-61442384 Msa0511780:CDS 30.0%
AATCGGTAGTTTCACTAAAT+GGG + chr3_4:61442366-61442385 Msa0511780:CDS 30.0%
GTAGTTGTATTTGGATTAAC+TGG - chr3_4:61442523-61442542 None:intergenic 30.0%
GTTAATCCAAATACAACTAC+CGG + chr3_4:61442523-61442542 Msa0511780:CDS 30.0%
TTACACGTTTCAGTTAAATG+AGG + chr3_4:61442555-61442574 Msa0511780:CDS 30.0%
CAAAATGCAAACCAGTTAAA+TGG + chr3_4:61442595-61442614 Msa0511780:CDS 30.0%
! ATTTGCATGGACATGATTTT+TGG + chr3_4:61442644-61442663 Msa0511780:CDS 30.0%
! TTTGCATGGACATGATTTTT+GGG + chr3_4:61442645-61442664 Msa0511780:CDS 30.0%
ACTGCAGTTATATTTCCATA+TGG + chr3_4:61442748-61442767 Msa0511780:CDS 30.0%
CAGTTATATTTCCATATGGT+TGG + chr3_4:61442752-61442771 Msa0511780:CDS 30.0%
ATTGAACCACATTTGCATAT+GGG + chr3_4:61442829-61442848 Msa0511780:CDS 30.0%
! GATGTCATTTAGGAATATCT+AGG - chr3_4:61442932-61442951 None:intergenic 30.0%
!! CTCAATTTTGGATGTCATTT+AGG - chr3_4:61442942-61442961 None:intergenic 30.0%
TGTAAGATATCATCACTTCA+TGG + chr3_4:61443025-61443044 Msa0511780:three_prime_UTR 30.0%
AAATGACCTAATTATTCACG+CGG - chr3_4:61443120-61443139 None:intergenic 30.0%
GAAGCATAATCAACGAATAA+AGG + chr3_4:61443194-61443213 Msa0511780:three_prime_UTR 30.0%
!! GCTCAGAGATTTAGTCTTTT+GGG - chr3_4:61436606-61436625 None:intergenic 35.0%
!! TGCTCAGAGATTTAGTCTTT+TGG - chr3_4:61436607-61436626 None:intergenic 35.0%
! TGCTGAAAGCAGTTTTTGTT+TGG + chr3_4:61436652-61436671 Msa0511780:CDS 35.0%
!!! CAGTTTTTGTTTGGTGCATA+TGG + chr3_4:61436661-61436680 Msa0511780:CDS 35.0%
!! TTTGTTTGGTGCATATGGTT+AGG + chr3_4:61436666-61436685 Msa0511780:CDS 35.0%
!! TTGTTTGGTGCATATGGTTA+GGG + chr3_4:61436667-61436686 Msa0511780:CDS 35.0%
ATACAAAAAGCCAGATTGTG+TGG + chr3_4:61436746-61436765 Msa0511780:CDS 35.0%
CTGTATTGAAAAGTTTCTCC+TGG - chr3_4:61437071-61437090 None:intergenic 35.0%
CCATGATAGAAATATGTACC+AGG - chr3_4:61437363-61437382 None:intergenic 35.0%
! CCTGGTACATATTTCTATCA+TGG + chr3_4:61437360-61437379 Msa0511780:CDS 35.0%
AGAGAGCCATTTCATTATGA+TGG + chr3_4:61437450-61437469 Msa0511780:CDS 35.0%
! AGGTTTTCTATGTGTTCGTT+TGG - chr3_4:61438451-61438470 None:intergenic 35.0%
ACATAGAAAACCTTGCAACT+AGG + chr3_4:61438458-61438477 Msa0511780:intron 35.0%
CCAACGATGATTTGATGAAA+TGG - chr3_4:61438488-61438507 None:intergenic 35.0%
CCATTTCATCAAATCATCGT+TGG + chr3_4:61438485-61438504 Msa0511780:intron 35.0%
GACAGTACCAAGAAAGATAA+TGG + chr3_4:61438851-61438870 Msa0511780:intron 35.0%
!!! TTTTAGAGCTTGCTCATCAA+TGG + chr3_4:61439054-61439073 Msa0511780:intron 35.0%
CAAATTGCATTGTTGTAGGT+TGG - chr3_4:61439124-61439143 None:intergenic 35.0%
CAACAATGCAATTTGAAAGG+TGG + chr3_4:61439129-61439148 Msa0511780:CDS 35.0%
TAGGAGAAAACTCACTGAAA+TGG - chr3_4:61439250-61439269 None:intergenic 35.0%
GATGAGCATATATTTGGATG+TGG - chr3_4:61439429-61439448 None:intergenic 35.0%
TTATGAGACAGCTACCTAAA+TGG - chr3_4:61439462-61439481 None:intergenic 35.0%
!! GTCGAAGGTTTACTTTTAAG+AGG + chr3_4:61439537-61439556 Msa0511780:intron 35.0%
CACTAATAGGTCAAAGAAGT+TGG + chr3_4:61439652-61439671 Msa0511780:intron 35.0%
CTACGATTCTGCACATTAAA+CGG - chr3_4:61439745-61439764 None:intergenic 35.0%
GAGATTTGAATCACATGAGT+GGG + chr3_4:61440304-61440323 Msa0511780:intron 35.0%
AGATTTGAATCACATGAGTG+GGG + chr3_4:61440305-61440324 Msa0511780:intron 35.0%
!!! TTCGTCTTTTTCAAGTGGTT+TGG - chr3_4:61440370-61440389 None:intergenic 35.0%
AAACCACTTGAAAAAGACGA+AGG + chr3_4:61440369-61440388 Msa0511780:intron 35.0%
TGGAGTCCTCGTATAAAATA+AGG + chr3_4:61440401-61440420 Msa0511780:intron 35.0%
TAACTGAGATGCATAGTGAT+TGG + chr3_4:61440439-61440458 Msa0511780:intron 35.0%
!! ACACTGGTTTCTTGATAACT+AGG + chr3_4:61440480-61440499 Msa0511780:intron 35.0%
TTACTCAGACCCATCAAAAA+GGG - chr3_4:61440686-61440705 None:intergenic 35.0%
ATTACTCAGACCCATCAAAA+AGG - chr3_4:61440687-61440706 None:intergenic 35.0%
CATGTTGATCTAACAAACCA+TGG - chr3_4:61441527-61441546 None:intergenic 35.0%
!! AAATGTTAACTTGTGCCCTT+GGG - chr3_4:61441760-61441779 None:intergenic 35.0%
GAAATGCAATAATCAGCAGT+AGG - chr3_4:61441895-61441914 None:intergenic 35.0%
GCAATTCAAGGAATGATATG+GGG - chr3_4:61441917-61441936 None:intergenic 35.0%
GTGCAATTCAAGGAATGATA+TGG - chr3_4:61441919-61441938 None:intergenic 35.0%
TCAATCTATGGTGCAATTCA+AGG - chr3_4:61441929-61441948 None:intergenic 35.0%
!!! AGTAGTTTTTTGTAGGGTCT+TGG - chr3_4:61442111-61442130 None:intergenic 35.0%
AAGACCCTACAAAAAACTAC+TGG + chr3_4:61442110-61442129 Msa0511780:CDS 35.0%
!!! GAAAGCCAGTAGTTTTTTGT+AGG - chr3_4:61442118-61442137 None:intergenic 35.0%
! TCATTCCATAATGGAGTGAT+TGG - chr3_4:61442238-61442257 None:intergenic 35.0%
! TGTGAATGCTTTGCTATGTT+TGG - chr3_4:61442263-61442282 None:intergenic 35.0%
TAATCCATTGGAAATCTCTC+TGG - chr3_4:61442484-61442503 None:intergenic 35.0%
! ATGGTAGTGAAATTCATCCA+TGG + chr3_4:61442620-61442639 Msa0511780:CDS 35.0%
!!! TGGACATGATTTTTGGGTTT+TGG + chr3_4:61442651-61442670 Msa0511780:CDS 35.0%
!!! GGACATGATTTTTGGGTTTT+GGG + chr3_4:61442652-61442671 Msa0511780:CDS 35.0%
!!! GATTTTTGGGTTTTGGGATA+TGG + chr3_4:61442658-61442677 Msa0511780:CDS 35.0%
! AAACTTTTCTCATCAACACC+TGG - chr3_4:61442700-61442719 None:intergenic 35.0%
TTGGACTGCATTAAGGTTTA+AGG + chr3_4:61442771-61442790 Msa0511780:CDS 35.0%
AATGTGGTTCAATGTGACAA+TGG - chr3_4:61442822-61442841 None:intergenic 35.0%
CATTGAACCACATTTGCATA+TGG + chr3_4:61442828-61442847 Msa0511780:CDS 35.0%
!!! AATGGGTGTTATTTTTGCTG+AGG + chr3_4:61442852-61442871 Msa0511780:CDS 35.0%
AAACACTCGGAGGAAATTAA+TGG - chr3_4:61442987-61443006 None:intergenic 35.0%
AAAGAAAGAAAAACACTCGG+AGG - chr3_4:61442997-61443016 None:intergenic 35.0%
AATGACCTAATTATTCACGC+GGG - chr3_4:61443119-61443138 None:intergenic 35.0%
! CATGTTGTGATGGGAATCAA+TGG + chr3_4:61436771-61436790 Msa0511780:CDS 40.0%
GAATAACAGTTCCCTCTGTA+TGG - chr3_4:61436866-61436885 None:intergenic 40.0%
! TTTGCAGTTTGGAACTCCTT+GGG + chr3_4:61437007-61437026 Msa0511780:intron 40.0%
TCTCAGTGTGCTATAAATCC+AGG + chr3_4:61437050-61437069 Msa0511780:CDS 40.0%
AGCAGTGGAAACAGAAAAAG+AGG - chr3_4:61437156-61437175 None:intergenic 40.0%
! ATCACATTTTTGACCCCAAG+TGG + chr3_4:61437193-61437212 Msa0511780:intron 40.0%
! ATGGACATATATGCCACTTG+GGG - chr3_4:61437209-61437228 None:intergenic 40.0%
! CATGGACATATATGCCACTT+GGG - chr3_4:61437210-61437229 None:intergenic 40.0%
ATATATGTCCATGCCAGCAA+TGG + chr3_4:61437217-61437236 Msa0511780:intron 40.0%
AAGAAAAACCATTGCTGGCA+TGG - chr3_4:61437228-61437247 None:intergenic 40.0%
GCTGTATGGTTCTCTAATAG+TGG + chr3_4:61437410-61437429 Msa0511780:CDS 40.0%
AATGGCTCTCTTTGTTCCTT+TGG - chr3_4:61437441-61437460 None:intergenic 40.0%
TTCACCAATCCATCTCATTG+GGG - chr3_4:61437547-61437566 None:intergenic 40.0%
GTTCACCAATCCATCTCATT+GGG - chr3_4:61437548-61437567 None:intergenic 40.0%
AAGCACTAATGCTCATATGG+TGG - chr3_4:61438155-61438174 None:intergenic 40.0%
!! GGAAAGCACTAATGCTCATA+TGG - chr3_4:61438158-61438177 None:intergenic 40.0%
GAAAACAACTCACACTCATG+TGG + chr3_4:61438235-61438254 Msa0511780:intron 40.0%
TAGAAAACCTTGCAACTAGG+TGG + chr3_4:61438461-61438480 Msa0511780:intron 40.0%
AAAAAATTGACAAGTGGGGG+TGG - chr3_4:61438543-61438562 None:intergenic 40.0%
TAAATGTACAATTGGCCACG+CGG + chr3_4:61438900-61438919 Msa0511780:intron 40.0%
AAAATAAAGCTAACACCGCG+TGG - chr3_4:61438918-61438937 None:intergenic 40.0%
TGTTCCCTAGCAGCTAAATA+TGG + chr3_4:61439093-61439112 Msa0511780:CDS 40.0%
GTTCCCTAGCAGCTAAATAT+GGG + chr3_4:61439094-61439113 Msa0511780:CDS 40.0%
!! ATATGTAGTGGGTCATAGCT+AGG - chr3_4:61439269-61439288 None:intergenic 40.0%
CGTTTAATGTGCAGAATCGT+AGG + chr3_4:61439743-61439762 Msa0511780:intron 40.0%
GGAGATTTGAATCACATGAG+TGG + chr3_4:61440303-61440322 Msa0511780:intron 40.0%
TGAGATGCATAGTGATTGGT+CGG + chr3_4:61440443-61440462 Msa0511780:intron 40.0%
TAGAAGGAATCACATCTTGC+AGG + chr3_4:61440520-61440539 Msa0511780:intron 40.0%
CAAAAAGAGAAGTGGCATAG+TGG - chr3_4:61440769-61440788 None:intergenic 40.0%
TCCAATTATGGGGACCAAAT+TGG + chr3_4:61441482-61441501 Msa0511780:intron 40.0%
TCCAATTTGGTCCCCATAAT+TGG - chr3_4:61441486-61441505 None:intergenic 40.0%
TTATGGGGACCAAATTGGAT+TGG + chr3_4:61441487-61441506 Msa0511780:intron 40.0%
TATGGGGACCAAATTGGATT+GGG + chr3_4:61441488-61441507 Msa0511780:intron 40.0%
!! TCATGTTAACTTGTGCCCTT+AGG + chr3_4:61441602-61441621 Msa0511780:intron 40.0%
!! CATGTTAACTTGTGCCCTTA+GGG + chr3_4:61441603-61441622 Msa0511780:intron 40.0%
!! ATCCTTAACTTGTGCCCTAA+GGG - chr3_4:61441620-61441639 None:intergenic 40.0%
CTTCTTAACTTATGCCCCAA+GGG + chr3_4:61441742-61441761 Msa0511780:intron 40.0%
!! AATGTTAACTTGTGCCCTTG+GGG - chr3_4:61441759-61441778 None:intergenic 40.0%
!! GAAATGTTAACTTGTGCCCT+TGG - chr3_4:61441761-61441780 None:intergenic 40.0%
! CTTATTGTAGTGGAAGCTGA+TGG + chr3_4:61442007-61442026 Msa0511780:CDS 40.0%
TTAAGGATTGTTAGGGCTTG+TGG - chr3_4:61442172-61442191 None:intergenic 40.0%
! TGGTAATGTTGGGAAAACTG+AGG - chr3_4:61442212-61442231 None:intergenic 40.0%
!! TGATTGGTGGTGGTAATGTT+GGG - chr3_4:61442222-61442241 None:intergenic 40.0%
! TTCCATAATGGAGTGATTGG+TGG - chr3_4:61442235-61442254 None:intergenic 40.0%
GATTGATCCTAAGTAAGGTG+TGG - chr3_4:61442422-61442441 None:intergenic 40.0%
CCAAATACAACTACCGGTAA+CGG + chr3_4:61442529-61442548 Msa0511780:CDS 40.0%
AAACGTGTAAACACCGTTAC+CGG - chr3_4:61442545-61442564 None:intergenic 40.0%
GCAAACCAGTTAAATGGGAA+TGG + chr3_4:61442601-61442620 Msa0511780:CDS 40.0%
CACTACCATTCCCATTTAAC+TGG - chr3_4:61442609-61442628 None:intergenic 40.0%
ATTCATCCATGGCATTTGCA+TGG + chr3_4:61442631-61442650 Msa0511780:CDS 40.0%
ATAACTGCAGTGTTCCTCAA+AGG - chr3_4:61442739-61442758 None:intergenic 40.0%
CTTAATGCAGTCCAACCATA+TGG - chr3_4:61442766-61442785 None:intergenic 40.0%
CATATGGTTGGACTGCATTA+AGG + chr3_4:61442764-61442783 Msa0511780:CDS 40.0%
ACCACATTTGCATATGGGAA+TGG + chr3_4:61442834-61442853 Msa0511780:CDS 40.0%
CCACATTTGCATATGGGAAT+GGG + chr3_4:61442835-61442854 Msa0511780:CDS 40.0%
CTGAGGCTGTTCATAAAGTT+AGG + chr3_4:61442869-61442888 Msa0511780:CDS 40.0%
CCACACTTAAGAGCTTCTTT+AGG - chr3_4:61442901-61442920 None:intergenic 40.0%
CCTAAAGAAGCTCTTAAGTG+TGG + chr3_4:61442898-61442917 Msa0511780:CDS 40.0%
ACTCGGAGGAAATTAATGGT+TGG - chr3_4:61442983-61443002 None:intergenic 40.0%
ATGACCTAATTATTCACGCG+GGG - chr3_4:61443118-61443137 None:intergenic 40.0%
ACAACATGCTCCACACAATC+TGG - chr3_4:61436759-61436778 None:intergenic 45.0%
TTGTGTGGAGCATGTTGTGA+TGG + chr3_4:61436761-61436780 Msa0511780:CDS 45.0%
TGTGTGGAGCATGTTGTGAT+GGG + chr3_4:61436762-61436781 Msa0511780:CDS 45.0%
TAATAGTTGGGCCTGGAAAC+TGG - chr3_4:61436797-61436816 None:intergenic 45.0%
! TCAGCTTTAATAGTTGGGCC+TGG - chr3_4:61436804-61436823 None:intergenic 45.0%
ACGAACAAGCTCCATACAGA+GGG + chr3_4:61436852-61436871 Msa0511780:CDS 45.0%
CAGAGGGAACTGTTATTCAC+TGG + chr3_4:61436868-61436887 Msa0511780:CDS 45.0%
GGAACTGTTATTCACTGGCA+TGG + chr3_4:61436873-61436892 Msa0511780:CDS 45.0%
! GTTTGCAGTTTGGAACTCCT+TGG + chr3_4:61437006-61437025 Msa0511780:intron 45.0%
GCATGGACATATATGCCACT+TGG - chr3_4:61437211-61437230 None:intergenic 45.0%
GTGTTAAATATGGTGCAGCC+TGG + chr3_4:61437342-61437361 Msa0511780:intron 45.0%
TTTGGTATGCAAAGAGCAGC+AGG + chr3_4:61437387-61437406 Msa0511780:CDS 45.0%
TTGGTATGCAAAGAGCAGCA+GGG + chr3_4:61437388-61437407 Msa0511780:CDS 45.0%
ATCTGCTCCTTAGTGATCTG+TGG + chr3_4:61437481-61437500 Msa0511780:CDS 45.0%
TTGTGTGCCACAGATCACTA+AGG - chr3_4:61437491-61437510 None:intergenic 45.0%
CACAAGCTCACATGAACAAG+AGG + chr3_4:61437506-61437525 Msa0511780:CDS 45.0%
AGCTCACATGAACAAGAGGT+TGG + chr3_4:61437510-61437529 Msa0511780:CDS 45.0%
GGTTCACCAATCCATCTCAT+TGG - chr3_4:61437549-61437568 None:intergenic 45.0%
GCTCCCATATTTAGCTGCTA+GGG - chr3_4:61439100-61439119 None:intergenic 45.0%
TGCTCCCATATTTAGCTGCT+AGG - chr3_4:61439101-61439120 None:intergenic 45.0%
TGGCTCCACATGAAGAATCT+GGG - chr3_4:61439169-61439188 None:intergenic 45.0%
TTGGCTCCACATGAAGAATC+TGG - chr3_4:61439170-61439189 None:intergenic 45.0%
GATTGCTAGTACAACGTCCT+TGG + chr3_4:61439209-61439228 Msa0511780:CDS 45.0%
CATTAAACGGCTACTTGAGC+TGG - chr3_4:61439732-61439751 None:intergenic 45.0%
!!! GGTCCTTCGTCTTTTTCAAG+TGG - chr3_4:61440375-61440394 None:intergenic 45.0%
AAAGACGAAGGACCACGTTA+TGG + chr3_4:61440381-61440400 Msa0511780:intron 45.0%
TATACGAGGACTCCATAACG+TGG - chr3_4:61440396-61440415 None:intergenic 45.0%
AAAGGGCGGGATCAGAATTA+GGG - chr3_4:61440669-61440688 None:intergenic 45.0%
AAAAGGGCGGGATCAGAATT+AGG - chr3_4:61440670-61440689 None:intergenic 45.0%
ACAAAAACCCGTGCATCACA+CGG + chr3_4:61441325-61441344 Msa0511780:intron 45.0%
TGAGCACACCCAATCCAATT+TGG - chr3_4:61441499-61441518 None:intergenic 45.0%
!! GATCCTTAACTTGTGCCCTA+AGG - chr3_4:61441621-61441640 None:intergenic 45.0%
CCTTGGGGCATAAGTTAAGA+AGG - chr3_4:61441744-61441763 None:intergenic 45.0%
CCTTCTTAACTTATGCCCCA+AGG + chr3_4:61441741-61441760 Msa0511780:intron 45.0%
GATGACATCGACATCTACTC+AGG + chr3_4:61442055-61442074 Msa0511780:CDS 45.0%
TGTTGTAAGGAGGACTGAGT+AGG - chr3_4:61442086-61442105 None:intergenic 45.0%
TAGGGTCTTGGTCTGTTGTA+AGG - chr3_4:61442099-61442118 None:intergenic 45.0%
!! TGGCTTTCAATCGGTGTTAG+AGG + chr3_4:61442130-61442149 Msa0511780:CDS 45.0%
!! GTGATTGGTGGTGGTAATGT+TGG - chr3_4:61442223-61442242 None:intergenic 45.0%
! CATAATGGAGTGATTGGTGG+TGG - chr3_4:61442232-61442251 None:intergenic 45.0%
CACCACCAATCACTCCATTA+TGG + chr3_4:61442230-61442249 Msa0511780:CDS 45.0%
TATTGAGGAGGAGAATCGTG+CGG - chr3_4:61442336-61442355 None:intergenic 45.0%
TTGCCAACCACACCTTACTT+AGG + chr3_4:61442412-61442431 Msa0511780:CDS 45.0%
GATCCTAAGTAAGGTGTGGT+TGG - chr3_4:61442418-61442437 None:intergenic 45.0%
ATTGGAAATCTCTCTGGTGG+TGG - chr3_4:61442478-61442497 None:intergenic 45.0%
ACCACCAGAGAGATTTCCAA+TGG + chr3_4:61442477-61442496 Msa0511780:CDS 45.0%
TCCATTGGAAATCTCTCTGG+TGG - chr3_4:61442481-61442500 None:intergenic 45.0%
CCGTTACCGGTAGTTGTATT+TGG - chr3_4:61442532-61442551 None:intergenic 45.0%
TCATGTCCATGCAAATGCCA+TGG - chr3_4:61442640-61442659 None:intergenic 45.0%
!!! TGGGTTTTGGGATATGGTGA+AGG + chr3_4:61442664-61442683 Msa0511780:CDS 45.0%
!!! GGGTTTTGGGATATGGTGAA+GGG + chr3_4:61442665-61442684 Msa0511780:CDS 45.0%
ATTTGACACGTGCACCTTTG+AGG + chr3_4:61442722-61442741 Msa0511780:CDS 45.0%
! AGGTTTAAGGCAGATAACCC+TGG + chr3_4:61442784-61442803 Msa0511780:CDS 45.0%
AATGGAATGCCCAAACACCA+GGG - chr3_4:61442804-61442823 None:intergenic 45.0%
CCCATTCCCATATGCAAATG+TGG - chr3_4:61442838-61442857 None:intergenic 45.0%
TAATTATTCACGCGGGGAGT+TGG - chr3_4:61443112-61443131 None:intergenic 45.0%
AACTCCCCGCGTGAATAATT+AGG + chr3_4:61443111-61443130 Msa0511780:three_prime_UTR 45.0%
!! AAATTTCAAAAATAAAATAA+AGG + chr3_4:61438781-61438800 Msa0511780:intron 5.0%
!! TTTAAATTATAATTTAATCA+TGG + chr3_4:61438829-61438848 Msa0511780:intron 5.0%
!! TTAAAAATCATTAATTAATA+TGG + chr3_4:61440140-61440159 Msa0511780:intron 5.0%
!!! ATTTTTAATAAAACTTAAAA+GGG + chr3_4:61441579-61441598 Msa0511780:intron 5.0%
GGAATCAATGGCCAGTTTCC+AGG + chr3_4:61436783-61436802 Msa0511780:CDS 50.0%
! CTGTATGGAGCTTGTTCGTG+AGG - chr3_4:61436851-61436870 None:intergenic 50.0%
CACGAACAAGCTCCATACAG+AGG + chr3_4:61436851-61436870 Msa0511780:CDS 50.0%
TCACTGGCATGGAATCAGAC+AGG + chr3_4:61436884-61436903 Msa0511780:CDS 50.0%
! TTTGGAACTCCTTGGGCTGA+TGG + chr3_4:61437014-61437033 Msa0511780:CDS 50.0%
ATCTCATTGGGGCTGAAGAG+AGG - chr3_4:61437536-61437555 None:intergenic 50.0%
TCTCTTCAGCCCCAATGAGA+TGG + chr3_4:61437535-61437554 Msa0511780:CDS 50.0%
TCAGCCCCAATGAGATGGAT+TGG + chr3_4:61437540-61437559 Msa0511780:CDS 50.0%
!! GAGATGGATTGGTGAACCAC+AGG + chr3_4:61437551-61437570 Msa0511780:CDS 50.0%
AAATGGGCCACCTAGTTGCA+AGG - chr3_4:61438471-61438490 None:intergenic 50.0%
! AGCTTGCTCATCAATGGACG+AGG + chr3_4:61439060-61439079 Msa0511780:CDS 50.0%
TGCACCCCAGATTCTTCATG+TGG + chr3_4:61439161-61439180 Msa0511780:CDS 50.0%
GGCTCCACATGAAGAATCTG+GGG - chr3_4:61439168-61439187 None:intergenic 50.0%
GTCCTTGGCTTCTCTCAACT+TGG + chr3_4:61439224-61439243 Msa0511780:CDS 50.0%
! GCATAGTGATTGGTCGGAGT+TGG + chr3_4:61440449-61440468 Msa0511780:intron 50.0%
GGAGTTGGCATGTGAAACAC+TGG + chr3_4:61440464-61440483 Msa0511780:intron 50.0%
! TCTGATCCCGCCCTTTTTGA+TGG + chr3_4:61440673-61440692 Msa0511780:intron 50.0%
! CTGATCCCGCCCTTTTTGAT+GGG + chr3_4:61440674-61440693 Msa0511780:intron 50.0%
TCAGACCCATCAAAAAGGGC+GGG - chr3_4:61440682-61440701 None:intergenic 50.0%
CTCAGACCCATCAAAAAGGG+CGG - chr3_4:61440683-61440702 None:intergenic 50.0%
TATGAGAGAGGTAGCCGCTA+GGG - chr3_4:61440854-61440873 None:intergenic 50.0%
CAAAAACCCGTGCATCACAC+GGG + chr3_4:61441326-61441345 Msa0511780:intron 50.0%
ACTCTAACCCGTGTGATGCA+CGG - chr3_4:61441336-61441355 None:intergenic 50.0%
TGCCCTTAGGGCACAAGTTA+AGG + chr3_4:61441615-61441634 Msa0511780:intron 50.0%
! CGATGTCATCGACTGCGAAT+GGG - chr3_4:61442045-61442064 None:intergenic 50.0%
! TCGATGTCATCGACTGCGAA+TGG - chr3_4:61442046-61442065 None:intergenic 50.0%
GGTCTTGGTCTGTTGTAAGG+AGG - chr3_4:61442096-61442115 None:intergenic 50.0%
GTTAGGGCTTGTGGTGTGTT+TGG - chr3_4:61442163-61442182 None:intergenic 50.0%
! TGGCTGTGGAGTTCCCATTT+TGG - chr3_4:61442299-61442318 None:intergenic 50.0%
ATCGTGCGGTGTGAGGATTT+CGG - chr3_4:61442322-61442341 None:intergenic 50.0%
GGTGAAGGGAGATTTAGACC+AGG + chr3_4:61442679-61442698 Msa0511780:CDS 50.0%
AGGCAGATAACCCTGGTGTT+TGG + chr3_4:61442791-61442810 Msa0511780:CDS 50.0%
GGCAGATAACCCTGGTGTTT+GGG + chr3_4:61442792-61442811 Msa0511780:CDS 50.0%
CAATGGAATGCCCAAACACC+AGG - chr3_4:61442805-61442824 None:intergenic 50.0%
CAAAGAGCAGCAGGGCTGTA+TGG + chr3_4:61437396-61437415 Msa0511780:CDS 55.0%
! GGCCAAGTTGAGAGAAGCCA+AGG - chr3_4:61439229-61439248 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr3_4:61439946-61439965 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr3_4:61439943-61439962 Msa0511780:intron 55.0%
CTATGAGAGAGGTAGCCGCT+AGG - chr3_4:61440855-61440874 None:intergenic 55.0%
CTCTAACCCGTGTGATGCAC+GGG - chr3_4:61441335-61441354 None:intergenic 55.0%
! TGGGTGTGCTCAAAGCACCA+TGG + chr3_4:61441507-61441526 Msa0511780:intron 55.0%
TGTGAGGATTTCGGTGGCTG+TGG - chr3_4:61442313-61442332 None:intergenic 55.0%
GCAGCAGTTCCATCAGCCCA+AGG - chr3_4:61437026-61437045 None:intergenic 60.0%
! CAAGGTTCGGGTTCGAACCC+TGG - chr3_4:61439901-61439920 None:intergenic 60.0%
TAAAGCCCCAACCGCCCTAG+CGG + chr3_4:61440837-61440856 Msa0511780:intron 60.0%
GTGCGGTGTGAGGATTTCGG+TGG - chr3_4:61442319-61442338 None:intergenic 60.0%
GAGGAGAATCGTGCGGTGTG+AGG - chr3_4:61442329-61442348 None:intergenic 60.0%
AGGTAGCCGCTAGGGCGGTT+GGG - chr3_4:61440846-61440865 None:intergenic 65.0%
GAGAGAGGTAGCCGCTAGGG+CGG - chr3_4:61440851-61440870 None:intergenic 65.0%
GGTAGCCGCTAGGGCGGTTG+GGG - chr3_4:61440845-61440864 None:intergenic 70.0%
GAGGTAGCCGCTAGGGCGGT+TGG - chr3_4:61440847-61440866 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 61436550 61443281 61436550 ID=Msa0511780;Name=Msa0511780
chr3_4 mRNA 61436550 61443281 61436550 ID=Msa0511780-mRNA-1;Parent=Msa0511780;Name=Msa0511780-mRNA-1;_AED=0.04;_eAED=0.04;_QI=95|1|1|1|1|1|5|348|565
chr3_4 exon 61436550 61436905 61436550 ID=Msa0511780-mRNA-1:exon:14963;Parent=Msa0511780-mRNA-1
chr3_4 exon 61437014 61437106 61437014 ID=Msa0511780-mRNA-1:exon:14964;Parent=Msa0511780-mRNA-1
chr3_4 exon 61437360 61437572 61437360 ID=Msa0511780-mRNA-1:exon:14965;Parent=Msa0511780-mRNA-1
chr3_4 exon 61439060 61439254 61439060 ID=Msa0511780-mRNA-1:exon:14966;Parent=Msa0511780-mRNA-1
chr3_4 exon 61441998 61443281 61441998 ID=Msa0511780-mRNA-1:exon:14967;Parent=Msa0511780-mRNA-1
chr3_4 five_prime_UTR 61436550 61436644 61436550 ID=Msa0511780-mRNA-1:five_prime_utr;Parent=Msa0511780-mRNA-1
chr3_4 CDS 61436645 61436905 61436645 ID=Msa0511780-mRNA-1:cds;Parent=Msa0511780-mRNA-1
chr3_4 CDS 61437014 61437106 61437014 ID=Msa0511780-mRNA-1:cds;Parent=Msa0511780-mRNA-1
chr3_4 CDS 61437360 61437572 61437360 ID=Msa0511780-mRNA-1:cds;Parent=Msa0511780-mRNA-1
chr3_4 CDS 61439060 61439254 61439060 ID=Msa0511780-mRNA-1:cds;Parent=Msa0511780-mRNA-1
chr3_4 CDS 61441998 61442933 61441998 ID=Msa0511780-mRNA-1:cds;Parent=Msa0511780-mRNA-1
chr3_4 three_prime_UTR 61442934 61443281 61442934 ID=Msa0511780-mRNA-1:three_prime_utr;Parent=Msa0511780-mRNA-1
Gene Sequence

>Msa0511780

ATGAGTTTGCTGAAAGCAGTTTTTGTTTGGTGCATATGGTTAGGGTTATTTGAGTTATCATTAGCAAAAGTGAGACACTACAAGTTTGATGTTGAATACATATACAAAAAGCCAGATTGTGTGGAGCATGTTGTGATGGGAATCAATGGCCAGTTTCCAGGCCCAACTATTAAAGCTGAAGTTAATGACACTCTTGTCATTGACCTCACGAACAAGCTCCATACAGAGGGAACTGTTATTCACTGGCATGGAATCAGACAGTTTGGAACTCCTTGGGCTGATGGAACTGCTGCAATCTCTCAGTGTGCTATAAATCCAGGAGAAACTTTTCAATACAGATTCAAAGTTGACAGGCCTGGTACATATTTCTATCATGGACATTTTGGTATGCAAAGAGCAGCAGGGCTGTATGGTTCTCTAATAGTGGATTTACCAAAGGAACAAAGAGAGCCATTTCATTATGATGGTGAGTTTAATCTGCTCCTTAGTGATCTGTGGCACACAAGCTCACATGAACAAGAGGTTGGCCTCTCTTCAGCCCCAATGAGATGGATTGGTGAACCACAGAGCTTGCTCATCAATGGACGAGGACAGTTCAATTGTTCCCTAGCAGCTAAATATGGGAGCACCAACCTACAACAATGCAATTTGAAAGGTGGTGAAGAATGTGCACCCCAGATTCTTCATGTGGAGCCAAAAAAGACCTATAGAATAAGGATTGCTAGTACAACGTCCTTGGCTTCTCTCAACTTGGCCATTTCAAATCACAAACTTATTGTAGTGGAAGCTGATGGAAACTACGTGCACCCATTCGCAGTCGATGACATCGACATCTACTCAGGTGAAACCTACTCAGTCCTCCTTACAACAGACCAAGACCCTACAAAAAACTACTGGCTTTCAATCGGTGTTAGAGGCAGAAAACCAAACACACCACAAGCCCTAACAATCCTTAACTACAAAACAATCTCTGCCTCAGTTTTCCCAACATTACCACCACCAATCACTCCATTATGGAATGATACCAAACATAGCAAAGCATTCACAAAACAAATCATTTCCAAAATGGGAACTCCACAGCCACCGAAATCCTCACACCGCACGATTCTCCTCCTCAATACACAAAACAAAATCGGTAGTTTCACTAAATGGGCTATTAACAATGTTTCATTAACATTGCCAACCACACCTTACTTAGGATCAATCAAATTTAAGCTAAACAATACATTTGATAGAAATCCACCACCAGAGAGATTTCCAATGGATTATGACATATTTAAAAATCCAGTTAATCCAAATACAACTACCGGTAACGGTGTTTACACGTTTCAGTTAAATGAGGTTGTTGATGTGATACTACAAAATGCAAACCAGTTAAATGGGAATGGTAGTGAAATTCATCCATGGCATTTGCATGGACATGATTTTTGGGTTTTGGGATATGGTGAAGGGAGATTTAGACCAGGTGTTGATGAGAAAAGTTTCAATTTGACACGTGCACCTTTGAGGAACACTGCAGTTATATTTCCATATGGTTGGACTGCATTAAGGTTTAAGGCAGATAACCCTGGTGTTTGGGCATTCCATTGTCACATTGAACCACATTTGCATATGGGAATGGGTGTTATTTTTGCTGAGGCTGTTCATAAAGTTAGGAACATACCTAAAGAAGCTCTTAAGTGTGGTGCTACAGCCTAG
Protein sequence

>Msa0511780

MSLLKAVFVWCIWLGLFELSLAKVRHYKFDVEYIYKKPDCVEHVVMGINGQFPGPTIKAEVNDTLVIDLTNKLHTEGTVIHWHGIRQFGTPWADGTAAISQCAINPGETFQYRFKVDRPGTYFYHGHFGMQRAAGLYGSLIVDLPKEQREPFHYDGEFNLLLSDLWHTSSHEQEVGLSSAPMRWIGEPQSLLINGRGQFNCSLAAKYGSTNLQQCNLKGGEECAPQILHVEPKKTYRIRIASTTSLASLNLAISNHKLIVVEADGNYVHPFAVDDIDIYSGETYSVLLTTDQDPTKNYWLSIGVRGRKPNTPQALTILNYKTISASVFPTLPPPITPLWNDTKHSKAFTKQIISKMGTPQPPKSSHRTILLLNTQNKIGSFTKWAINNVSLTLPTTPYLGSIKFKLNNTFDRNPPPERFPMDYDIFKNPVNPNTTTGNGVYTFQLNEVVDVILQNANQLNGNGSEIHPWHLHGHDFWVLGYGEGRFRPGVDEKSFNLTRAPLRNTAVIFPYGWTALRFKADNPGVWAFHCHIEPHLHMGMGVIFAEAVHKVRNIPKEALKCGATA*