Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143780 | XP_003624439.1 | 94.907 | 216 | 11 | 0 | 1 | 216 | 529 | 744 | 5.61e-143 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143780 | G7KW57 | 94.907 | 216 | 11 | 0 | 1 | 216 | 529 | 744 | 2.68e-143 | 426 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0659550 | Msa1143780 | -0.800612 | 1.327902e-48 | -8.615850e-47 |
| Msa1032630 | Msa1143780 | 0.919997 | 2.233546e-87 | -8.615850e-47 |
| Msa1069670 | Msa1143780 | 0.823340 | 1.460300e-53 | -8.615850e-47 |
| Msa1120470 | Msa1143780 | 0.813865 | 2.061673e-51 | -8.615850e-47 |
| Msa1129690 | Msa1143780 | -0.808245 | 3.405275e-50 | -8.615850e-47 |
| Msa1143780 | Msa1181170 | 0.808450 | 3.078181e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143780 | MtrunA17_Chr7g0251591 | 94.907 | 216 | 11 | 0 | 1 | 216 | 529 | 744 | 5.16e-147 | 426 |
| Msa1143780 | MtrunA17_Chr3g0131831 | 55.102 | 98 | 39 | 2 | 123 | 215 | 84 | 181 | 8.97e-28 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143780 | AT3G26890.6 | 50.000 | 152 | 61 | 6 | 67 | 215 | 507 | 646 | 2.11e-35 | 132 |
| Msa1143780 | AT3G26890.5 | 50.000 | 152 | 61 | 6 | 67 | 215 | 508 | 647 | 2.41e-35 | 132 |
| Msa1143780 | AT3G26890.1 | 50.000 | 152 | 61 | 6 | 67 | 215 | 508 | 647 | 2.41e-35 | 132 |
| Msa1143780 | AT3G26890.4 | 50.000 | 152 | 61 | 6 | 67 | 215 | 508 | 647 | 2.41e-35 | 132 |
| Msa1143780 | AT3G26890.3 | 50.000 | 152 | 61 | 6 | 67 | 215 | 508 | 647 | 2.41e-35 | 132 |
| Msa1143780 | AT3G26890.7 | 50.000 | 152 | 61 | 6 | 67 | 215 | 508 | 647 | 2.41e-35 | 132 |
| Msa1143780 | AT3G26890.8 | 50.000 | 152 | 61 | 6 | 67 | 215 | 508 | 647 | 2.41e-35 | 132 |
| Msa1143780 | AT3G26890.2 | 50.000 | 152 | 61 | 6 | 67 | 215 | 508 | 647 | 2.41e-35 | 132 |
| Msa1143780 | AT5G41110.1 | 46.203 | 158 | 54 | 6 | 58 | 215 | 495 | 621 | 6.60e-31 | 119 |
| Msa1143780 | AT5G41110.2 | 46.203 | 158 | 54 | 6 | 58 | 215 | 495 | 621 | 6.60e-31 | 119 |
Find 62 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTTGTGTAATGATTTAA+AGG | 0.129935 | 7_4:+19627397 | Msa1143780:CDS |
| CAACAATGTCAATAATTTAA+TGG | 0.166881 | 7_4:+19629209 | Msa1143780:three_prime_UTR |
| TCGAAGTATCTTGGATCTTC+AGG | 0.267708 | 7_4:-19629039 | None:intergenic |
| GACATTGTTGAAGTATTTAC+AGG | 0.295023 | 7_4:-19629196 | None:intergenic |
| AACAATGTCAATAATTTAAT+GGG | 0.296411 | 7_4:+19629210 | Msa1143780:three_prime_UTR |
| TGTATATAGTTACATGCTAT+TGG | 0.317266 | 7_4:+19629124 | Msa1143780:three_prime_UTR |
| CAGTTGATGTCGAAGTATCT+TGG | 0.338633 | 7_4:-19629048 | None:intergenic |
| GAGAAAACATGTGATGAATC+AGG | 0.378217 | 7_4:+19627200 | Msa1143780:CDS |
| GGAATGAAAGAAAGGAGTCT+TGG | 0.390571 | 7_4:+19627177 | Msa1143780:CDS |
| ATTAAGTTCTCTTCCAGAAA+AGG | 0.409105 | 7_4:+19627343 | Msa1143780:CDS |
| TCTTCCAGAAAAGGCTGGAT+TGG | 0.420395 | 7_4:+19627352 | Msa1143780:CDS |
| GAATGAAAGAAAGGAGTCTT+GGG | 0.423283 | 7_4:+19627178 | Msa1143780:CDS |
| TCAGTTAAACTTCCATGATC+TGG | 0.425257 | 7_4:-19627143 | None:intergenic |
| ATCTTGGATCTTCAGGGAAA+TGG | 0.426868 | 7_4:-19629032 | None:intergenic |
| ACTGTTAGAACTCTTTGAAC+AGG | 0.439854 | 7_4:-19627237 | None:intergenic |
| GTCATTTCCACTGTCCAAAC+CGG | 0.441003 | 7_4:-19626952 | None:intergenic |
| AAACACAAAGGTTTCTAGCT+TGG | 0.446488 | 7_4:+19627082 | Msa1143780:CDS |
| TCCATGATCTGGTGAGTGCT+TGG | 0.461711 | 7_4:-19627132 | None:intergenic |
| AGTTCTCTTCCAGAAAAGGC+TGG | 0.462804 | 7_4:+19627347 | Msa1143780:CDS |
| AGTGATGTTGAAATGCTTTG+TGG | 0.479179 | 7_4:+19629278 | Msa1143780:three_prime_UTR |
| CGAAGTATCTTGGATCTTCA+GGG | 0.483518 | 7_4:-19629038 | None:intergenic |
| TCCAAGCACTCACCAGATCA+TGG | 0.487462 | 7_4:+19627131 | Msa1143780:CDS |
| CGCCTAGAAAATAATTCAAA+GGG | 0.489033 | 7_4:-19629316 | None:intergenic |
| TGCATTACTTCCCCACTACA+CGG | 0.497521 | 7_4:-19627011 | None:intergenic |
| ATGTGAGAGGAATGAAAGAA+AGG | 0.508447 | 7_4:+19627169 | Msa1143780:CDS |
| TAATGCACATCTTACAATGC+TGG | 0.509050 | 7_4:-19629342 | None:intergenic |
| TGACTGAGGGGAAGTTGAGC+TGG | 0.511860 | 7_4:-19626916 | None:intergenic |
| GAAGTATTTACAGGAGGAAG+AGG | 0.515600 | 7_4:-19629187 | None:intergenic |
| AGGACAATGGCCTCAAGTAA+AGG | 0.516150 | 7_4:-19629147 | None:intergenic |
| CCGCCTAGAAAATAATTCAA+AGG | 0.526092 | 7_4:-19629317 | None:intergenic |
| TTCAGATGCCGACGAGGGAA+AGG | 0.531155 | 7_4:+19627439 | Msa1143780:CDS |
| ATCATGACAACCCGTGTAGT+GGG | 0.536673 | 7_4:+19627000 | Msa1143780:CDS |
| ATGCTATTGGCCTTTACTTG+AGG | 0.538301 | 7_4:+19629137 | Msa1143780:three_prime_UTR |
| GGCTGGATTGGACATGGAAG+GGG | 0.539426 | 7_4:+19627364 | Msa1143780:CDS |
| AGGCTGGATTGGACATGGAA+GGG | 0.543736 | 7_4:+19627363 | Msa1143780:CDS |
| TCAAAGAGTTCTAACAGTGC+TGG | 0.548643 | 7_4:+19627242 | Msa1143780:CDS |
| AATTACAACATCAACTGCAT+CGG | 0.553363 | 7_4:-19627036 | None:intergenic |
| AGTTCAACCGGTTTGGACAG+TGG | 0.559482 | 7_4:+19626945 | Msa1143780:CDS |
| AATCATGACAACCCGTGTAG+TGG | 0.559925 | 7_4:+19626999 | Msa1143780:CDS |
| AAGGCTGGATTGGACATGGA+AGG | 0.560734 | 7_4:+19627362 | Msa1143780:CDS |
| AGAAAAGGCTGGATTGGACA+TGG | 0.570456 | 7_4:+19627358 | Msa1143780:CDS |
| GATTGGACATGGAAGGGGAA+CGG | 0.579510 | 7_4:+19627369 | Msa1143780:CDS |
| TGGACAGTGGAAATGACAAA+GGG | 0.582026 | 7_4:+19626958 | Msa1143780:CDS |
| AGAAAACATGTGATGAATCA+GGG | 0.586761 | 7_4:+19627201 | Msa1143780:CDS |
| TATGCATACCTTTCCCTCGT+CGG | 0.599027 | 7_4:-19627447 | None:intergenic |
| GCATTACTTCCCCACTACAC+GGG | 0.602906 | 7_4:-19627010 | None:intergenic |
| TTGGACAGTGGAAATGACAA+AGG | 0.613787 | 7_4:+19626957 | Msa1143780:CDS |
| GTCTATTTGGCAGATGAATG+TGG | 0.614657 | 7_4:+19629005 | Msa1143780:intron |
| AGCATGTAACTATATACAAG+AGG | 0.620915 | 7_4:-19629119 | None:intergenic |
| AAGGGCAGATAAAGCGAAGG+TGG | 0.626406 | 7_4:-19627283 | None:intergenic |
| GGTGGAGAGCATAACGAAGT+GGG | 0.628379 | 7_4:-19627265 | None:intergenic |
| AAGTATTTACAGGAGGAAGA+GGG | 0.628616 | 7_4:-19629186 | None:intergenic |
| ATTGTTGAAGTATTTACAGG+AGG | 0.636960 | 7_4:-19629193 | None:intergenic |
| GTTTAACTGATGAATGTGAG+AGG | 0.640480 | 7_4:+19627156 | Msa1143780:CDS |
| CGTCATTCAGATGCCGACGA+GGG | 0.641258 | 7_4:+19627434 | Msa1143780:CDS |
| GCGTCATTCAGATGCCGACG+AGG | 0.641458 | 7_4:+19627433 | Msa1143780:CDS |
| AGGTGGAGAGCATAACGAAG+TGG | 0.642212 | 7_4:-19627266 | None:intergenic |
| TCATGACAACCCGTGTAGTG+GGG | 0.648256 | 7_4:+19627001 | Msa1143780:CDS |
| GCATGTAACTATATACAAGA+GGG | 0.664324 | 7_4:-19629118 | None:intergenic |
| TACAAATCAGAGAAACACAA+AGG | 0.679254 | 7_4:+19627070 | Msa1143780:CDS |
| GAAAAGGGCAGATAAAGCGA+AGG | 0.690630 | 7_4:-19627286 | None:intergenic |
| TCGGCATCTGAATGACGCTG+AGG | 0.695206 | 7_4:-19627428 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATTTTTCAATCATTT+TGG | - | chr7_4:19628256-19628275 | None:intergenic | 10.0% |
| !! | AAAATGATTGAAAAATAATT+TGG | + | chr7_4:19628255-19628274 | Msa1143780:intron | 10.0% |
| !! | AAGAAAAATATGTAAAACTT+TGG | - | chr7_4:19627492-19627511 | None:intergenic | 15.0% |
| !! | ATGATTTATGATATAACATT+TGG | + | chr7_4:19628633-19628652 | Msa1143780:intron | 15.0% |
| !! | AACAATGTCAATAATTTAAT+GGG | + | chr7_4:19629210-19629229 | Msa1143780:three_prime_UTR | 15.0% |
| !!! | TAGATTTTAAAAGAATGTAA+TGG | + | chr7_4:19629402-19629421 | Msa1143780:three_prime_UTR | 15.0% |
| !!! | TCTATAATCTTCATTTTCAA+CGG | - | chr7_4:19626674-19626693 | None:intergenic | 20.0% |
| !!! | TAAAACTATTGAAAGCATTA+TGG | + | chr7_4:19627520-19627539 | Msa1143780:intron | 20.0% |
| !!! | TACAAGAAAACGTATAATTT+TGG | - | chr7_4:19627935-19627954 | None:intergenic | 20.0% |
| !! | ATTCTGATTTATAAGAACAA+TGG | + | chr7_4:19628131-19628150 | Msa1143780:intron | 20.0% |
| !! | AAATAACTAGTGTATATTAC+AGG | + | chr7_4:19628772-19628791 | Msa1143780:intron | 20.0% |
| !! | AATAACTAGTGTATATTACA+GGG | + | chr7_4:19628773-19628792 | Msa1143780:intron | 20.0% |
| !! | AAAAGTTATTCAATCAATGT+TGG | + | chr7_4:19628800-19628819 | Msa1143780:intron | 20.0% |
| !!! | AGTGTATTTTTTAGTATTGT+TGG | + | chr7_4:19628844-19628863 | Msa1143780:intron | 20.0% |
| !! | CAACAATGTCAATAATTTAA+TGG | + | chr7_4:19629209-19629228 | Msa1143780:three_prime_UTR | 20.0% |
| !!! | TAATGGCAAGATTTTTTAAA+AGG | + | chr7_4:19629419-19629438 | Msa1143780:three_prime_UTR | 20.0% |
| !! | TATAATCTTCATTTTCAACG+GGG | - | chr7_4:19626672-19626691 | None:intergenic | 25.0% |
| !! | CTATAATCTTCATTTTCAAC+GGG | - | chr7_4:19626673-19626692 | None:intergenic | 25.0% |
| ! | AATGAAGATTATAGACTTCA+CGG | + | chr7_4:19626679-19626698 | Msa1143780:intron | 25.0% |
| ! | AAAGTCATATTGCATTTACT+TGG | + | chr7_4:19626819-19626838 | Msa1143780:intron | 25.0% |
| !!! | TTGAACTATTTTTTGACTGA+GGG | - | chr7_4:19626932-19626951 | None:intergenic | 25.0% |
| ! | CTACTTGTGTAATGATTTAA+AGG | + | chr7_4:19627397-19627416 | Msa1143780:CDS | 25.0% |
| ! | ACATTAAACCAAAACTGAAA+AGG | - | chr7_4:19627584-19627603 | None:intergenic | 25.0% |
| ! | CGAAAACAAACAGTTTATAA+TGG | - | chr7_4:19627623-19627642 | None:intergenic | 25.0% |
| ! | TGCATCAAATGAAATTTCAA+AGG | - | chr7_4:19627718-19627737 | None:intergenic | 25.0% |
| ! | TAGGAGCTATACTAAAATTA+TGG | + | chr7_4:19628193-19628212 | Msa1143780:intron | 25.0% |
| ! | AGGAGCTATACTAAAATTAT+GGG | + | chr7_4:19628194-19628213 | Msa1143780:intron | 25.0% |
| ! | TATACTAAAATTATGGGGAA+GGG | + | chr7_4:19628200-19628219 | Msa1143780:intron | 25.0% |
| !!! | AAATAATTTGGTTTTATGCC+TGG | + | chr7_4:19628267-19628286 | Msa1143780:intron | 25.0% |
| !!! | AATAATTTGGTTTTATGCCT+GGG | + | chr7_4:19628268-19628287 | Msa1143780:intron | 25.0% |
| ! | TTAACATAAAACCTATGTTG+GGG | - | chr7_4:19628382-19628401 | None:intergenic | 25.0% |
| ! | CTTAACATAAAACCTATGTT+GGG | - | chr7_4:19628383-19628402 | None:intergenic | 25.0% |
| ! | AACTATAGGCAAAACTATTA+AGG | + | chr7_4:19628583-19628602 | Msa1143780:intron | 25.0% |
| ! | AATATGGTTCATGTATTACA+GGG | - | chr7_4:19628663-19628682 | None:intergenic | 25.0% |
| ! | TCTAAAGACTAAAACCAATA+TGG | - | chr7_4:19628679-19628698 | None:intergenic | 25.0% |
| ! | AGAAACAACCTTTATATTTC+AGG | + | chr7_4:19628744-19628763 | Msa1143780:intron | 25.0% |
| ! | GAAACAACCTTTATATTTCA+GGG | + | chr7_4:19628745-19628764 | Msa1143780:intron | 25.0% |
| ! | AAACAACCTTTATATTTCAG+GGG | + | chr7_4:19628746-19628765 | Msa1143780:intron | 25.0% |
| ! | TCTATATTTGAACAGAATGT+TGG | + | chr7_4:19628882-19628901 | Msa1143780:intron | 25.0% |
| ! | ATATATTAGTGTGCATTGTT+TGG | + | chr7_4:19628949-19628968 | Msa1143780:intron | 25.0% |
| ! | TGTATATAGTTACATGCTAT+TGG | + | chr7_4:19629124-19629143 | Msa1143780:three_prime_UTR | 25.0% |
| !!! | TGAACTATTTTTTGACTGAG+GGG | - | chr7_4:19626931-19626950 | None:intergenic | 30.0% |
| !!! | GTTGAACTATTTTTTGACTG+AGG | - | chr7_4:19626933-19626952 | None:intergenic | 30.0% |
| CAGTCAAAAAATAGTTCAAC+CGG | + | chr7_4:19626933-19626952 | Msa1143780:CDS | 30.0% | |
| AAAAAATAGTTCAACCGGTT+TGG | + | chr7_4:19626938-19626957 | Msa1143780:CDS | 30.0% | |
| ! | TCATGATTCTTTTGTACTGT+TGG | - | chr7_4:19626987-19627006 | None:intergenic | 30.0% |
| AATTACAACATCAACTGCAT+CGG | - | chr7_4:19627039-19627058 | None:intergenic | 30.0% | |
| TACAAATCAGAGAAACACAA+AGG | + | chr7_4:19627070-19627089 | Msa1143780:CDS | 30.0% | |
| ! | GGAGAATTTTCTAAACAAAG+AGG | + | chr7_4:19627103-19627122 | Msa1143780:CDS | 30.0% |
| AGAAAACATGTGATGAATCA+GGG | + | chr7_4:19627201-19627220 | Msa1143780:CDS | 30.0% | |
| !!! | TACTGGTCTTTTTAGGAAAA+GGG | - | chr7_4:19627304-19627323 | None:intergenic | 30.0% |
| ATTAAGTTCTCTTCCAGAAA+AGG | + | chr7_4:19627343-19627362 | Msa1143780:CDS | 30.0% | |
| GTATGCATATGCTTATATTG+TGG | + | chr7_4:19627461-19627480 | Msa1143780:intron | 30.0% | |
| !!! | ATGCTTTCAATAGTTTTAGC+AGG | - | chr7_4:19627518-19627537 | None:intergenic | 30.0% |
| ! | TACTTGATCCTTTTCAGTTT+TGG | + | chr7_4:19627573-19627592 | Msa1143780:intron | 30.0% |
| !!! | TTTTTTCTGTTTACTTCCAC+TGG | - | chr7_4:19627649-19627668 | None:intergenic | 30.0% |
| GAAAAAACTTATTGCTCCTT+GGG | - | chr7_4:19627826-19627845 | None:intergenic | 30.0% | |
| AGAAAAAACTTATTGCTCCT+TGG | - | chr7_4:19627827-19627846 | None:intergenic | 30.0% | |
| GCAATGAATACCAAGTATAA+TGG | + | chr7_4:19627965-19627984 | Msa1143780:intron | 30.0% | |
| !! | ATACCAAGTATAATGGATTG+TGG | + | chr7_4:19627972-19627991 | Msa1143780:intron | 30.0% |
| ATAAAATGTCGAGTGAATAG+AGG | + | chr7_4:19628096-19628115 | Msa1143780:intron | 30.0% | |
| TAAAATGTCGAGTGAATAGA+GGG | + | chr7_4:19628097-19628116 | Msa1143780:intron | 30.0% | |
| AGCATAGGAGAATTAAACTT+AGG | + | chr7_4:19628174-19628193 | Msa1143780:intron | 30.0% | |
| GGAGCTATACTAAAATTATG+GGG | + | chr7_4:19628195-19628214 | Msa1143780:intron | 30.0% | |
| CTATACTAAAATTATGGGGA+AGG | + | chr7_4:19628199-19628218 | Msa1143780:intron | 30.0% | |
| GCTTAACATAAAACCTATGT+TGG | - | chr7_4:19628384-19628403 | None:intergenic | 30.0% | |
| ATCCTTAACAGCTCAAATAT+AGG | - | chr7_4:19628433-19628452 | None:intergenic | 30.0% | |
| AAAACTATTAAGGAAGACTG+AGG | + | chr7_4:19628593-19628612 | Msa1143780:intron | 30.0% | |
| CAATATGGTTCATGTATTAC+AGG | - | chr7_4:19628664-19628683 | None:intergenic | 30.0% | |
| CTGTAATACATGAACCATAT+TGG | + | chr7_4:19628662-19628681 | Msa1143780:intron | 30.0% | |
| ! | TTTTAGCCCCTGAAATATAA+AGG | - | chr7_4:19628755-19628774 | None:intergenic | 30.0% |
| CTTGTTAGTCCTGATAATTT+CGG | - | chr7_4:19628826-19628845 | None:intergenic | 30.0% | |
| GCATGTAACTATATACAAGA+GGG | - | chr7_4:19629121-19629140 | None:intergenic | 30.0% | |
| AGCATGTAACTATATACAAG+AGG | - | chr7_4:19629122-19629141 | None:intergenic | 30.0% | |
| ! | ATTGTTGAAGTATTTACAGG+AGG | - | chr7_4:19629196-19629215 | None:intergenic | 30.0% |
| ! | GACATTGTTGAAGTATTTAC+AGG | - | chr7_4:19629199-19629218 | None:intergenic | 30.0% |
| ! | CACCCTTTGAATTATTTTCT+AGG | + | chr7_4:19629314-19629333 | Msa1143780:three_prime_UTR | 30.0% |
| CGCCTAGAAAATAATTCAAA+GGG | - | chr7_4:19629319-19629338 | None:intergenic | 30.0% | |
| ! | CCTTTGAATTATTTTCTAGG+CGG | + | chr7_4:19629317-19629336 | Msa1143780:three_prime_UTR | 30.0% |
| CCAAACAAATCTAATCGACT+GGG | - | chr7_4:19626776-19626795 | None:intergenic | 35.0% | |
| TCCAAACAAATCTAATCGAC+TGG | - | chr7_4:19626777-19626796 | None:intergenic | 35.0% | |
| ! | AAGACTCGAGAGTAATTTTC+TGG | - | chr7_4:19626896-19626915 | None:intergenic | 35.0% |
| !! | AAACACAAAGGTTTCTAGCT+TGG | + | chr7_4:19627082-19627101 | Msa1143780:CDS | 35.0% |
| TCAGTTAAACTTCCATGATC+TGG | - | chr7_4:19627146-19627165 | None:intergenic | 35.0% | |
| GTTTAACTGATGAATGTGAG+AGG | + | chr7_4:19627156-19627175 | Msa1143780:CDS | 35.0% | |
| ATGTGAGAGGAATGAAAGAA+AGG | + | chr7_4:19627169-19627188 | Msa1143780:CDS | 35.0% | |
| GAATGAAAGAAAGGAGTCTT+GGG | + | chr7_4:19627178-19627197 | Msa1143780:CDS | 35.0% | |
| GAGAAAACATGTGATGAATC+AGG | + | chr7_4:19627200-19627219 | Msa1143780:CDS | 35.0% | |
| ACTGTTAGAACTCTTTGAAC+AGG | - | chr7_4:19627240-19627259 | None:intergenic | 35.0% | |
| !!! | CTACTGGTCTTTTTAGGAAA+AGG | - | chr7_4:19627305-19627324 | None:intergenic | 35.0% |
| TCCTAAAAAGACCAGTAGAT+CGG | + | chr7_4:19627307-19627326 | Msa1143780:CDS | 35.0% | |
| ! | AGCAAGAACAAAACTTGCTT+TGG | - | chr7_4:19627694-19627713 | None:intergenic | 35.0% |
| ATCACGTGTTTATACTCCTT+GGG | - | chr7_4:19627771-19627790 | None:intergenic | 35.0% | |
| TACTCATGAATAAGCAAGAG+TGG | - | chr7_4:19627883-19627902 | None:intergenic | 35.0% | |
| TTGCCACAATCCATTATACT+TGG | - | chr7_4:19627978-19627997 | None:intergenic | 35.0% | |
| AGATTCTTTCATACCTCAAG+AGG | - | chr7_4:19628023-19628042 | None:intergenic | 35.0% | |
| CTTGAGGTATGAAAGAATCT+AGG | + | chr7_4:19628023-19628042 | Msa1143780:intron | 35.0% | |
| TAGGAGATAGAGACATTAGT+TGG | + | chr7_4:19628042-19628061 | Msa1143780:intron | 35.0% | |
| !! | CAGGTTTTAACGAGATTATG+AGG | + | chr7_4:19628069-19628088 | Msa1143780:intron | 35.0% |
| AAAATGTCGAGTGAATAGAG+GGG | + | chr7_4:19628098-19628117 | Msa1143780:intron | 35.0% | |
| TAGACAATTGTACAGAGCAT+AGG | + | chr7_4:19628159-19628178 | Msa1143780:intron | 35.0% | |
| ! | GAAGCAATTTACTTGCTACT+CGG | + | chr7_4:19628302-19628321 | Msa1143780:intron | 35.0% |
| ! | GCACATGTCTTTCATTGATT+TGG | + | chr7_4:19628338-19628357 | Msa1143780:intron | 35.0% |
| !! | GTCTTTCATTGATTTGGAGA+AGG | + | chr7_4:19628344-19628363 | Msa1143780:intron | 35.0% |
| TGCCTATATTTGAGCTGTTA+AGG | + | chr7_4:19628428-19628447 | Msa1143780:intron | 35.0% | |
| AGGATATCCATGATAGTTTG+AGG | + | chr7_4:19628448-19628467 | Msa1143780:intron | 35.0% | |
| GGATATCCATGATAGTTTGA+GGG | + | chr7_4:19628449-19628468 | Msa1143780:intron | 35.0% | |
| GATATCCATGATAGTTTGAG+GGG | + | chr7_4:19628450-19628469 | Msa1143780:intron | 35.0% | |
| ACTGTTCTCACTCTAATCAT+GGG | - | chr7_4:19628476-19628495 | None:intergenic | 35.0% | |
| CTGATCTACTCTCTATACTA+TGG | - | chr7_4:19628521-19628540 | None:intergenic | 35.0% | |
| !! | TAGTTTTGCCTATAGTTCCA+CGG | - | chr7_4:19628580-19628599 | None:intergenic | 35.0% |
| GAAGATGACATGAATATCAC+TGG | + | chr7_4:19628697-19628716 | Msa1143780:intron | 35.0% | |
| !! | TGTTTCTAGTCCTCAATCTT+CGG | - | chr7_4:19628731-19628750 | None:intergenic | 35.0% |
| AACAGAATGTTGGACATGAT+AGG | + | chr7_4:19628892-19628911 | Msa1143780:intron | 35.0% | |
| !!! | AGGTTTTGTTGTGGTCTATT+TGG | + | chr7_4:19628992-19629011 | Msa1143780:intron | 35.0% |
| !! | AAGCATCATGCTTTTGAAGA+GGG | - | chr7_4:19629091-19629110 | None:intergenic | 35.0% |
| !! | AAAGCATCATGCTTTTGAAG+AGG | - | chr7_4:19629092-19629111 | None:intergenic | 35.0% |
| !!! | GTGCTATTTTTCAAGGACAA+TGG | - | chr7_4:19629163-19629182 | None:intergenic | 35.0% |
| AAGTATTTACAGGAGGAAGA+GGG | - | chr7_4:19629189-19629208 | None:intergenic | 35.0% | |
| AGTGATGTTGAAATGCTTTG+TGG | + | chr7_4:19629278-19629297 | Msa1143780:three_prime_UTR | 35.0% | |
| CCGCCTAGAAAATAATTCAA+AGG | - | chr7_4:19629320-19629339 | None:intergenic | 35.0% | |
| TAATGCACATCTTACAATGC+TGG | - | chr7_4:19629345-19629364 | None:intergenic | 35.0% | |
| TTCAACGGGGAAAAAAAGTC+TGG | - | chr7_4:19626659-19626678 | None:intergenic | 40.0% | |
| ! | CCCAGTCGATTAGATTTGTT+TGG | + | chr7_4:19626773-19626792 | Msa1143780:intron | 40.0% |
| TTGGACAGTGGAAATGACAA+AGG | + | chr7_4:19626957-19626976 | Msa1143780:CDS | 40.0% | |
| TGGACAGTGGAAATGACAAA+GGG | + | chr7_4:19626958-19626977 | Msa1143780:CDS | 40.0% | |
| GGAATGAAAGAAAGGAGTCT+TGG | + | chr7_4:19627177-19627196 | Msa1143780:CDS | 40.0% | |
| ! | TCAAAGAGTTCTAACAGTGC+TGG | + | chr7_4:19627242-19627261 | Msa1143780:CDS | 40.0% |
| !! | CTGTTTGTTTTCGATTCCAG+TGG | + | chr7_4:19627630-19627649 | Msa1143780:intron | 40.0% |
| GATCACGTGTTTATACTCCT+TGG | - | chr7_4:19627772-19627791 | None:intergenic | 40.0% | |
| !! | ATAATGGATTGTGGCAAGAC+AGG | + | chr7_4:19627981-19628000 | Msa1143780:intron | 40.0% |
| !!! | AATTTGGTTTTATGCCTGGG+AGG | + | chr7_4:19628271-19628290 | Msa1143780:intron | 40.0% |
| ! | ATTTGGAGAAGGCATACGAT+AGG | + | chr7_4:19628355-19628374 | Msa1143780:intron | 40.0% |
| ! | TTTGGAGAAGGCATACGATA+GGG | + | chr7_4:19628356-19628375 | Msa1143780:intron | 40.0% |
| CACTGTTCTCACTCTAATCA+TGG | - | chr7_4:19628477-19628496 | None:intergenic | 40.0% | |
| CATGATTAGAGTGAGAACAG+TGG | + | chr7_4:19628475-19628494 | Msa1143780:intron | 40.0% | |
| GAAGACTGAGGTCAATGATT+TGG | + | chr7_4:19628605-19628624 | Msa1143780:intron | 40.0% | |
| CAATGTTGGCCGAAATTATC+AGG | + | chr7_4:19628814-19628833 | Msa1143780:intron | 40.0% | |
| AAAACCTTGTGAGACACTAC+AGG | - | chr7_4:19628979-19628998 | None:intergenic | 40.0% | |
| !!! | TGTCTCACAAGGTTTTGTTG+TGG | + | chr7_4:19628983-19629002 | Msa1143780:intron | 40.0% |
| GTCTATTTGGCAGATGAATG+TGG | + | chr7_4:19629005-19629024 | Msa1143780:intron | 40.0% | |
| ATCTTGGATCTTCAGGGAAA+TGG | - | chr7_4:19629035-19629054 | None:intergenic | 40.0% | |
| ! | CGAAGTATCTTGGATCTTCA+GGG | - | chr7_4:19629041-19629060 | None:intergenic | 40.0% |
| ! | TCGAAGTATCTTGGATCTTC+AGG | - | chr7_4:19629042-19629061 | None:intergenic | 40.0% |
| ! | CAGTTGATGTCGAAGTATCT+TGG | - | chr7_4:19629051-19629070 | None:intergenic | 40.0% |
| !! | AGCATCATGCTTTTGAAGAG+GGG | - | chr7_4:19629090-19629109 | None:intergenic | 40.0% |
| !! | ATGCTATTGGCCTTTACTTG+AGG | + | chr7_4:19629137-19629156 | Msa1143780:three_prime_UTR | 40.0% |
| !!! | AGGGTCAGTGCTATTTTTCA+AGG | - | chr7_4:19629170-19629189 | None:intergenic | 40.0% |
| ! | GAAGTATTTACAGGAGGAAG+AGG | - | chr7_4:19629190-19629209 | None:intergenic | 40.0% |
| GTCATTTCCACTGTCCAAAC+CGG | - | chr7_4:19626955-19626974 | None:intergenic | 45.0% | |
| AATCATGACAACCCGTGTAG+TGG | + | chr7_4:19626999-19627018 | Msa1143780:CDS | 45.0% | |
| ATCATGACAACCCGTGTAGT+GGG | + | chr7_4:19627000-19627019 | Msa1143780:CDS | 45.0% | |
| TGCATTACTTCCCCACTACA+CGG | - | chr7_4:19627014-19627033 | None:intergenic | 45.0% | |
| GAAAAGGGCAGATAAAGCGA+AGG | - | chr7_4:19627289-19627308 | None:intergenic | 45.0% | |
| !!! | GCCGATCTACTGGTCTTTTT+AGG | - | chr7_4:19627311-19627330 | None:intergenic | 45.0% |
| !! | GCATTTTTGAGCCGATCTAC+TGG | - | chr7_4:19627321-19627340 | None:intergenic | 45.0% |
| AGTTCTCTTCCAGAAAAGGC+TGG | + | chr7_4:19627347-19627366 | Msa1143780:CDS | 45.0% | |
| TCTTCCAGAAAAGGCTGGAT+TGG | + | chr7_4:19627352-19627371 | Msa1143780:CDS | 45.0% | |
| ! | ATGTCCAATCCAGCCTTTTC+TGG | - | chr7_4:19627359-19627378 | None:intergenic | 45.0% |
| ! | AGAAAAGGCTGGATTGGACA+TGG | + | chr7_4:19627358-19627377 | Msa1143780:CDS | 45.0% |
| TATGCATACCTTTCCCTCGT+CGG | - | chr7_4:19627450-19627469 | None:intergenic | 45.0% | |
| AACAAACCTTCTGCTACCCA+AGG | + | chr7_4:19627752-19627771 | Msa1143780:intron | 45.0% | |
| TATACTCCTTGGGTAGCAGA+AGG | - | chr7_4:19627761-19627780 | None:intergenic | 45.0% | |
| ACAGGAATGATCACGCGTTA+AGG | - | chr7_4:19627803-19627822 | None:intergenic | 45.0% | |
| AACTTATTGCTCCTTGGGAC+AGG | - | chr7_4:19627821-19627840 | None:intergenic | 45.0% | |
| ACCAGACAATGTACCTCTTG+AGG | + | chr7_4:19628007-19628026 | Msa1143780:intron | 45.0% | |
| ! | ACCTCAAGAGGTACATTGTC+TGG | - | chr7_4:19628011-19628030 | None:intergenic | 45.0% |
| ! | AGAGACATTAGTTGGCTCAC+AGG | + | chr7_4:19628050-19628069 | Msa1143780:intron | 45.0% |
| GGTAGTTGAACCGAAGATTG+AGG | + | chr7_4:19628718-19628737 | Msa1143780:intron | 45.0% | |
| !! | CATCATGCTTTTGAAGAGGG+GGG | - | chr7_4:19629088-19629107 | None:intergenic | 45.0% |
| !! | GCATCATGCTTTTGAAGAGG+GGG | - | chr7_4:19629089-19629108 | None:intergenic | 45.0% |
| AGGACAATGGCCTCAAGTAA+AGG | - | chr7_4:19629150-19629169 | None:intergenic | 45.0% | |
| !!! | ATAATTTTAAAAGATTATAT+TGG | + | chr7_4:19629364-19629383 | Msa1143780:three_prime_UTR | 5.0% |
| !! | AGTTCAACCGGTTTGGACAG+TGG | + | chr7_4:19626945-19626964 | Msa1143780:CDS | 50.0% |
| TCATGACAACCCGTGTAGTG+GGG | + | chr7_4:19627001-19627020 | Msa1143780:CDS | 50.0% | |
| GCATTACTTCCCCACTACAC+GGG | - | chr7_4:19627013-19627032 | None:intergenic | 50.0% | |
| TCCAAGCACTCACCAGATCA+TGG | + | chr7_4:19627131-19627150 | Msa1143780:CDS | 50.0% | |
| TCCATGATCTGGTGAGTGCT+TGG | - | chr7_4:19627135-19627154 | None:intergenic | 50.0% | |
| ! | GGTGGAGAGCATAACGAAGT+GGG | - | chr7_4:19627268-19627287 | None:intergenic | 50.0% |
| ! | AGGTGGAGAGCATAACGAAG+TGG | - | chr7_4:19627269-19627288 | None:intergenic | 50.0% |
| AAGGGCAGATAAAGCGAAGG+TGG | - | chr7_4:19627286-19627305 | None:intergenic | 50.0% | |
| ! | AAGGCTGGATTGGACATGGA+AGG | + | chr7_4:19627362-19627381 | Msa1143780:CDS | 50.0% |
| ! | AGGCTGGATTGGACATGGAA+GGG | + | chr7_4:19627363-19627382 | Msa1143780:CDS | 50.0% |
| GATTGGACATGGAAGGGGAA+CGG | + | chr7_4:19627369-19627388 | Msa1143780:CDS | 50.0% | |
| TGCTTCATGATCAACCTCCC+AGG | - | chr7_4:19628288-19628307 | None:intergenic | 50.0% | |
| ATACGATAGGGCCCCAACAT+AGG | + | chr7_4:19628368-19628387 | Msa1143780:intron | 50.0% | |
| ATGGGCCCCTCAAACTATCA+TGG | - | chr7_4:19628458-19628477 | None:intergenic | 50.0% | |
| GTGGAAAGCCGTGGAACTAT+AGG | + | chr7_4:19628569-19628588 | Msa1143780:intron | 50.0% | |
| TCTGCCTGTAGTGTCTCACA+AGG | + | chr7_4:19628972-19628991 | Msa1143780:intron | 50.0% | |
| TGACTGAGGGGAAGTTGAGC+TGG | - | chr7_4:19626919-19626938 | None:intergenic | 55.0% | |
| ! | GGCTGGATTGGACATGGAAG+GGG | + | chr7_4:19627364-19627383 | Msa1143780:CDS | 55.0% |
| TCGGCATCTGAATGACGCTG+AGG | - | chr7_4:19627431-19627450 | None:intergenic | 55.0% | |
| CGTCATTCAGATGCCGACGA+GGG | + | chr7_4:19627434-19627453 | Msa1143780:CDS | 55.0% | |
| TTCAGATGCCGACGAGGGAA+AGG | + | chr7_4:19627439-19627458 | Msa1143780:CDS | 55.0% | |
| GCGTGATCATTCCTGTCCCA+AGG | + | chr7_4:19627807-19627826 | Msa1143780:intron | 55.0% | |
| TCGAGCAGCTCTATTGCTCG+AGG | + | chr7_4:19628544-19628563 | Msa1143780:intron | 55.0% | |
| AGCTCTATTGCTCGAGGCAG+TGG | + | chr7_4:19628550-19628569 | Msa1143780:intron | 55.0% | |
| GCGTCATTCAGATGCCGACG+AGG | + | chr7_4:19627433-19627452 | Msa1143780:CDS | 60.0% | |
| CTCGAGGCAGTGGAAAGCCG+TGG | + | chr7_4:19628560-19628579 | Msa1143780:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 19626630 | 19629454 | 19626630 | ID=Msa1143780;Name=Msa1143780 |
| chr7_4 | mRNA | 19626630 | 19629454 | 19626630 | ID=Msa1143780-mRNA-1;Parent=Msa1143780;Name=Msa1143780-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.5|0.33|1|1|1|3|383|216 |
| chr7_4 | exon | 19626630 | 19626647 | 19626630 | ID=Msa1143780-mRNA-1:exon:4475;Parent=Msa1143780-mRNA-1 |
| chr7_4 | exon | 19626882 | 19627460 | 19626882 | ID=Msa1143780-mRNA-1:exon:4476;Parent=Msa1143780-mRNA-1 |
| chr7_4 | exon | 19629018 | 19629454 | 19629018 | ID=Msa1143780-mRNA-1:exon:4477;Parent=Msa1143780-mRNA-1 |
| chr7_4 | CDS | 19626630 | 19626647 | 19626630 | ID=Msa1143780-mRNA-1:cds;Parent=Msa1143780-mRNA-1 |
| chr7_4 | CDS | 19626882 | 19627460 | 19626882 | ID=Msa1143780-mRNA-1:cds;Parent=Msa1143780-mRNA-1 |
| chr7_4 | CDS | 19629018 | 19629071 | 19629018 | ID=Msa1143780-mRNA-1:cds;Parent=Msa1143780-mRNA-1 |
| chr7_4 | three_prime_UTR | 19629072 | 19629454 | 19629072 | ID=Msa1143780-mRNA-1:three_prime_utr;Parent=Msa1143780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
