AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1181170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1181170 MtrunA17_Chr7g0241531 92.157 153 12 0 1 153 233 385 3.97e-100 295
Msa1181170 MtrunA17_Chr7g0235691 90.850 153 14 0 1 153 232 384 1.18e-98 292
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 243 sgRNAs with CRISPR-Local

Find 512 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTAACCCATTAATGAATT+TGG 0.140474 8_1:-15496802 None:intergenic
GGGTAACCCATTAATGAATT+TGG 0.140474 8_1:-15502121 None:intergenic
GGGTAATTTCCTTGAAAATT+TGG 0.153373 8_1:-15496844 None:intergenic
GGGTAATTTCCTTGAAAATT+TGG 0.153373 8_1:-15502163 None:intergenic
TTCAATGCAATACTTCAAAT+TGG 0.171496 8_1:-15498763 None:intergenic
TGCCTGCTGCATTCCAGGGC+TGG 0.207422 8_1:-15496867 None:intergenic
TGCCTGCTGCATTCCAGGGC+TGG 0.207422 8_1:-15502186 None:intergenic
CAGCATTGGGTTTGGGTGTG+GGG 0.211301 8_1:-15496665 None:intergenic
CTGCAATTTCTATTACATTT+TGG 0.212596 8_1:+15502475 Msa1181170:three_prime_UTR
CCTTGAAAATTTGGGCCATT+TGG 0.235231 8_1:-15496835 None:intergenic
CCTTGAAAATTTGGGCCATT+TGG 0.235231 8_1:-15502154 None:intergenic
CTTTGATAGTCTGAATCTTC+TGG 0.237309 8_1:-15501442 None:intergenic
TTCAGCATTGGGTTTGGGTG+TGG 0.242330 8_1:-15496667 None:intergenic
GCCTGCTGCATTCCAGGGCT+GGG 0.247983 8_1:-15496866 None:intergenic
GCCTGCTGCATTCCAGGGCT+GGG 0.247983 8_1:-15502185 None:intergenic
GATAACCGTGACAACTTTAA+TGG 0.248154 8_1:+15502388 Msa1181170:three_prime_UTR
GGAACATTGGTGGGTTGTGC+AGG 0.262651 8_1:-15496643 None:intergenic
CCGTCTTCTTTATCTGCATT+GGG 0.270406 8_1:-15501572 None:intergenic
TGGAGACCCAAATTCATTAA+TGG 0.271048 8_1:+15496795 Msa1181170:CDS
TGGAGACCCAAATTCATTAA+TGG 0.271048 8_1:+15502114 Msa1181170:three_prime_UTR
GTGGGTTCAGCATTGGGTTT+GGG 0.273827 8_1:-15496672 None:intergenic
GTGGGTTCAGCATTGGGTTT+GGG 0.273827 8_1:-15501991 None:intergenic
AGGAATGCCTGCTGCATTCC+AGG 0.284694 8_1:-15496872 None:intergenic
AGGAATGCCTGCTGCATTCC+AGG 0.284694 8_1:-15502191 None:intergenic
TCAGCATTGGGTTTGGGTGT+GGG 0.290806 8_1:-15496666 None:intergenic
CTTGAAAATTTGGGCCATTT+GGG 0.292117 8_1:-15496834 None:intergenic
CTTGAAAATTTGGGCCATTT+GGG 0.292117 8_1:-15502153 None:intergenic
GGTGGGTTCAGCATTGGGTT+TGG 0.296312 8_1:-15496673 None:intergenic
GGTGGGTTCAGCATTGGGTT+TGG 0.296312 8_1:-15501992 None:intergenic
TTACCTTTGGTAAACAATAA+AGG 0.297348 8_1:-15502537 None:intergenic
GCCGGAGGTGGTGGTGGTGG+CGG 0.298646 8_1:-15502295 None:intergenic
TCCGTCTTCTTTATCTGCAT+TGG 0.301508 8_1:-15501573 None:intergenic
TGGGTGTGGGAGAACATTGC+TGG 0.314124 8_1:-15501972 None:intergenic
AGGAAGGAGGGTGAATAATT+TGG 0.315615 8_1:+15498728 Msa1181170:intron
GGTAATTTCCTTGAAAATTT+GGG 0.316309 8_1:-15496843 None:intergenic
GGTAATTTCCTTGAAAATTT+GGG 0.316309 8_1:-15502162 None:intergenic
TCATAGGGAGCAACATAAAA+TGG 0.319723 8_1:-15496739 None:intergenic
AATGAGGAGCTGCACATATT+AGG 0.326464 8_1:-15501478 None:intergenic
GGTGGTGGTGGTGGCGGGAG+AGG 0.329052 8_1:-15502289 None:intergenic
ATGGTTGAGCTCGGTCTTGC+GGG 0.329657 8_1:-15496720 None:intergenic
ATGGTTGAGCTCGGTCTTGC+GGG 0.329657 8_1:-15502039 None:intergenic
GAAGATCGGCGTGGAATTCA+TGG 0.334875 8_1:-15501544 None:intergenic
TTCAGCATTGGGTTTGGGTG+TGG 0.341790 8_1:-15501986 None:intergenic
TGGGCCGGAGGTGGTGGTGG+TGG 0.347238 8_1:-15502298 None:intergenic
GGTAACCCATTAATGAATTT+GGG 0.353294 8_1:-15496801 None:intergenic
GGTAACCCATTAATGAATTT+GGG 0.353294 8_1:-15502120 None:intergenic
CCGGAGGTGGTGGTGGTGGC+GGG 0.356680 8_1:-15502294 None:intergenic
AAGGGATTCTAAAGGTATAT+TGG 0.360516 8_1:+15502252 Msa1181170:three_prime_UTR
GGTTGCCTGCCCTGACCATT+TGG 0.364740 8_1:+15498896 Msa1181170:three_prime_UTR
CTCAGATTTGAATAGCTTTG+AGG 0.366950 8_1:-15498220 None:intergenic
GGTTGTGCAGGGTGCATTGT+TGG 0.367244 8_1:-15496631 None:intergenic
TGAGCTCGGTCTTGCGGGAA+AGG 0.367370 8_1:-15496715 None:intergenic
TGAGCTCGGTCTTGCGGGAA+AGG 0.367370 8_1:-15502034 None:intergenic
GGAGACCCAAATTCATTAAT+GGG 0.371180 8_1:+15496796 Msa1181170:CDS
GGAGACCCAAATTCATTAAT+GGG 0.371180 8_1:+15502115 Msa1181170:three_prime_UTR
CTTCCTGTTGCAAAGGGTAT+TGG 0.371327 8_1:+15498930 Msa1181170:three_prime_UTR
AACATGTGGGCCGGAGGTGG+TGG 0.373736 8_1:-15502304 None:intergenic
TGATCACCAGGATAGTAGTT+TGG 0.374252 8_1:-15502331 None:intergenic
GCACAGGTGGGTTCAGCATT+GGG 0.376338 8_1:-15496678 None:intergenic
GCACAGGTGGGTTCAGCATT+GGG 0.376338 8_1:-15501997 None:intergenic
TCATAGGGAGCAGCATAAAA+TGG 0.377461 8_1:-15502058 None:intergenic
AGAACATTGCTGGGTTGTGC+AGG 0.379924 8_1:-15501962 None:intergenic
TACTCAGGAAATGAGTTATC+TGG 0.380101 8_1:-15496607 None:intergenic
TACTCAGGAAATGAGTTATC+TGG 0.380101 8_1:-15501926 None:intergenic
CTTGAAAGAGCTTGATCTCT+TGG 0.380918 8_1:-15501731 None:intergenic
TCAGCATTGGGTTTGGGTGT+GGG 0.383907 8_1:-15501985 None:intergenic
TGGTGGTGGCGGGAGAGGCA+TGG 0.384652 8_1:-15502284 None:intergenic
TTGGAAAACTTGGAATAATA+TGG 0.389238 8_1:+15502622 Msa1181170:three_prime_UTR
GGCCATTTGGGACACCTTGT+GGG 0.394238 8_1:-15496822 None:intergenic
GGCCATTTGGGACACCTTGT+GGG 0.394238 8_1:-15502141 None:intergenic
GGTGGTGGCGGGAGAGGCAT+GGG 0.397055 8_1:-15502283 None:intergenic
ATGTGGGCCGGAGGTGGTGG+TGG 0.401538 8_1:-15502301 None:intergenic
GGTTGTGCAGGGTGCATTGT+TGG 0.401668 8_1:-15501950 None:intergenic
CAAGAGATCAAGCTCTTTCA+AGG 0.402710 8_1:+15501732 Msa1181170:three_prime_UTR
CACCCTTCAGATTCCATGTC+TGG 0.408210 8_1:+15501797 Msa1181170:three_prime_UTR
CAGGACTCGTCTTCTGATAT+TGG 0.415458 8_1:+15496772 Msa1181170:CDS
CAGGACTCGTCTTCTGATAT+TGG 0.415458 8_1:+15502091 Msa1181170:three_prime_UTR
TCAATGCAATACTTCAAATT+GGG 0.416566 8_1:-15498762 None:intergenic
CCTGCTGCATTCCAGGGCTG+GGG 0.417288 8_1:-15496865 None:intergenic
CCTGCTGCATTCCAGGGCTG+GGG 0.417288 8_1:-15502184 None:intergenic
AACTACTATCCTGGTGATCA+TGG 0.417309 8_1:+15502334 Msa1181170:three_prime_UTR
CCACCTTGTCCTTGTTCAAA+AGG 0.417893 8_1:-15496892 None:intergenic
CCACCTTGTCCTTGTTCAAA+AGG 0.417893 8_1:-15502211 None:intergenic
GAGCTCGGTCTTGCGGGAAA+GGG 0.418923 8_1:-15496714 None:intergenic
GAGCTCGGTCTTGCGGGAAA+GGG 0.418923 8_1:-15502033 None:intergenic
GTCCTGCCTAGGCATATCAT+AGG 0.422973 8_1:-15496755 None:intergenic
GTCCTGCCTAGGCATATCAT+AGG 0.422973 8_1:-15502074 None:intergenic
TCCATGTCTGGTTCTGTTGG+AGG 0.424844 8_1:+15501809 Msa1181170:three_prime_UTR
GTGGTATGGCTGTGGATCCA+AGG 0.425473 8_1:+15496914 Msa1181170:CDS
GTGGTATGGCTGTGGATCCA+AGG 0.425473 8_1:+15502233 Msa1181170:three_prime_UTR
TTCAACATGTGGGCCGGAGG+TGG 0.425476 8_1:-15502307 None:intergenic
ATTGAAATATGCTTCAGATT+CGG 0.426914 8_1:+15498808 Msa1181170:three_prime_UTR
TTTAATGGTCAAGGCTGATA+AGG 0.430029 8_1:+15502403 Msa1181170:three_prime_UTR
GATCTCTTGGTGGTTGCCGA+CGG 0.430969 8_1:-15501718 None:intergenic
TTCTGTTGGAGGTATGCAGC+AGG 0.434177 8_1:+15501820 Msa1181170:three_prime_UTR
GGCACAGGTGGGTTCAGCAT+TGG 0.438653 8_1:-15496679 None:intergenic
GGCACAGGTGGGTTCAGCAT+TGG 0.438653 8_1:-15501998 None:intergenic
ATCTCTTGGTGGTTGCCGAC+GGG 0.438811 8_1:-15501717 None:intergenic
ATCGAATGTGTTGGAAAACT+TGG 0.439617 8_1:+15502612 Msa1181170:three_prime_UTR
TGCTTGTCAGTAAACTGAAC+AGG 0.440063 8_1:-15501890 None:intergenic
GATTCCATGTCTGGTTCTGT+TGG 0.440649 8_1:+15501806 Msa1181170:three_prime_UTR
TTGAAGTATTGCATTGAAAG+AGG 0.442249 8_1:+15498768 Msa1181170:three_prime_UTR
GCTGCATGTCGAAACTTTGC+TGG 0.447803 8_1:-15496531 None:intergenic
GCTGCATGTCGAAACTTTGC+TGG 0.447803 8_1:-15501850 None:intergenic
TTGCATTGAAAGAGGTTTGA+GGG 0.449189 8_1:+15498776 Msa1181170:three_prime_UTR
TGCTGATCTTCCTGTTGCAA+AGG 0.449994 8_1:+15498923 Msa1181170:three_prime_UTR
GGCGGGAGAGGCATGGGCTG+TGG 0.452263 8_1:-15502277 None:intergenic
TCAGCAAGGACCAAATGGTC+AGG 0.454307 8_1:-15498906 None:intergenic
GTACCAATACCCTTTGCAAC+AGG 0.456253 8_1:-15498933 None:intergenic
GGGTGTGGGAGAACATTGCT+GGG 0.460632 8_1:-15501971 None:intergenic
GCTGATCTTCCTGTTGCAAA+GGG 0.461785 8_1:+15498924 Msa1181170:three_prime_UTR
GGGCCATTTGGGACACCTTG+TGG 0.461980 8_1:-15496823 None:intergenic
GGGCCATTTGGGACACCTTG+TGG 0.461980 8_1:-15502142 None:intergenic
GGACATGATGGTCAAGGTTA+TGG 0.463050 8_1:+15502355 Msa1181170:three_prime_UTR
AATATACCTTTAGAATCCCT+TGG 0.464167 8_1:-15496931 None:intergenic
AATATACCTTTAGAATCCCT+TGG 0.464167 8_1:-15502250 None:intergenic
TTCGTTCTGCAATTCAGAAA+CGG 0.466991 8_1:-15498194 None:intergenic
CCCCAGCCCTGGAATGCAGC+AGG 0.472725 8_1:+15496865 Msa1181170:CDS
CCCCAGCCCTGGAATGCAGC+AGG 0.472725 8_1:+15502184 Msa1181170:three_prime_UTR
AGCTCGGTCTTGCGGGAAAG+GGG 0.473849 8_1:-15496713 None:intergenic
AGCTCGGTCTTGCGGGAAAG+GGG 0.473849 8_1:-15502032 None:intergenic
CTCCCTTCAGATTCGATGAC+TGG 0.474571 8_1:+15496478 None:intergenic
CTGAACCCACCTGTGCCATT+TGG 0.475075 8_1:+15496685 Msa1181170:CDS
CTGAACCCACCTGTGCCATT+TGG 0.475075 8_1:+15502004 Msa1181170:three_prime_UTR
GAACATTGGTGGGTTGTGCA+GGG 0.476226 8_1:-15496642 None:intergenic
AAATTCTCAACATCATGATC+TGG 0.477320 8_1:+15501685 Msa1181170:three_prime_UTR
CTAGAATCGTCAAATGAGAA+TGG 0.478826 8_1:+15502588 Msa1181170:three_prime_UTR
CTGCTGCATTCCAGGGCTGG+GGG 0.483882 8_1:-15496864 None:intergenic
CTGCTGCATTCCAGGGCTGG+GGG 0.483882 8_1:-15502183 None:intergenic
TGCTTGTCGGTAAACTGAAA+AGG 0.484454 8_1:-15496571 None:intergenic
GATCAAGCTCTTTCAAGGCC+AGG 0.485446 8_1:+15501737 Msa1181170:three_prime_UTR
AGCATTGGGTTTGGGTGTGG+GGG 0.486521 8_1:-15496664 None:intergenic
GAAAGAGCTTGATCTCTTGG+TGG 0.487434 8_1:-15501728 None:intergenic
CCATCCTCTGATGGGTCGGC+AGG 0.488214 8_1:+15498843 Msa1181170:three_prime_UTR
CCCGCCACCACCACCACCTC+CGG 0.489852 8_1:+15502294 Msa1181170:three_prime_UTR
CTCGCTCACCAAGCTGGCGA+CGG 0.489987 8_1:-15498998 None:intergenic
TAAACTGAACAGGTTCTTGT+GGG 0.493397 8_1:-15501880 None:intergenic
TTGAAACCAAACTACTATCC+TGG 0.500802 8_1:+15502325 Msa1181170:three_prime_UTR
GAAGATCAGCAAGGACCAAA+TGG 0.503230 8_1:-15498911 None:intergenic
AGTAAGAATCCATCCTCTGA+TGG 0.503238 8_1:+15498834 Msa1181170:three_prime_UTR
TGCATTGGGGCGAAGAAGAT+CGG 0.503512 8_1:-15501558 None:intergenic
ACCAACTGATTGCTGCTTGT+CGG 0.505779 8_1:-15496584 None:intergenic
TCGCTCACCAAGCTGGCGAC+GGG 0.507248 8_1:-15498997 None:intergenic
AGCCTTCCATAAATCGCAAT+CGG 0.515681 8_1:-15499047 None:intergenic
TAAACTGAAAAGGTTCTTGT+GGG 0.518389 8_1:-15496561 None:intergenic
GGGTGCATTGTTGGATACTC+AGG 0.520311 8_1:-15496622 None:intergenic
GGGTGCATTGTTGGATACTC+AGG 0.520311 8_1:-15501941 None:intergenic
CCATCATGTCCATGATCACC+AGG 0.520401 8_1:-15502343 None:intergenic
AGTAGTTTGGTTTCAACATG+TGG 0.520682 8_1:-15502318 None:intergenic
TCCCTATGATATGCCTAGGC+AGG 0.521544 8_1:+15496753 Msa1181170:CDS
TCCCTATGATATGCCTAGGC+AGG 0.521544 8_1:+15502072 Msa1181170:three_prime_UTR
TACCCACAAGGTGTCCCAAA+TGG 0.522614 8_1:+15496820 Msa1181170:CDS
TACCCACAAGGTGTCCCAAA+TGG 0.522614 8_1:+15502139 Msa1181170:three_prime_UTR
TGTTGATTTGATAAGGAAGG+AGG 0.522782 8_1:+15498715 Msa1181170:intron
ATTGCATTGAAAGAGGTTTG+AGG 0.524679 8_1:+15498775 Msa1181170:three_prime_UTR
GCCTCGAGCAGTGGAGTCTG+AGG 0.531560 8_1:-15501633 None:intergenic
AAGGACCAAATGGTCAGGGC+AGG 0.533168 8_1:-15498901 None:intergenic
GGATAACCAAATGGCACAGG+TGG 0.535200 8_1:-15496691 None:intergenic
GGATAACCAAATGGCACAGG+TGG 0.535200 8_1:-15502010 None:intergenic
AATGGTTGAGCTCGGTCTTG+CGG 0.535415 8_1:-15496721 None:intergenic
AATGGTTGAGCTCGGTCTTG+CGG 0.535415 8_1:-15502040 None:intergenic
GACTCGTCTTCTGATATTGG+TGG 0.536749 8_1:+15496775 Msa1181170:CDS
GACTCGTCTTCTGATATTGG+TGG 0.536749 8_1:+15502094 Msa1181170:three_prime_UTR
AATGAACTCGCTCACCAAGC+TGG 0.540474 8_1:-15499004 None:intergenic
GATTGCGATTTATGGAAGGC+TGG 0.540765 8_1:+15499049 Msa1181170:three_prime_UTR
GAACATTGCTGGGTTGTGCA+GGG 0.547408 8_1:-15501961 None:intergenic
CTGCTCCCTATGATATGCCT+AGG 0.547789 8_1:+15502068 Msa1181170:three_prime_UTR
GTTGATTTGATAAGGAAGGA+GGG 0.548291 8_1:+15498716 Msa1181170:intron
TTTGGTTTCAACATGTGGGC+CGG 0.549536 8_1:-15502313 None:intergenic
TTTCCTTTATTGTTTACCAA+AGG 0.550069 8_1:+15502534 Msa1181170:three_prime_UTR
TTCCGATTGCGATTTATGGA+AGG 0.551908 8_1:+15499045 Msa1181170:three_prime_UTR
TGATGTTGAGAATTTGAACC+TGG 0.554957 8_1:-15501677 None:intergenic
GGAATGCCTGCTGCATTCCA+GGG 0.556867 8_1:-15496871 None:intergenic
GGAATGCCTGCTGCATTCCA+GGG 0.556867 8_1:-15502190 None:intergenic
TGGTATGGCTGTGGATCCAA+GGG 0.562473 8_1:+15496915 Msa1181170:CDS
TGGTATGGCTGTGGATCCAA+GGG 0.562473 8_1:+15502234 Msa1181170:three_prime_UTR
GAGAATGGAATCGAATGTGT+TGG 0.564119 8_1:+15502603 Msa1181170:three_prime_UTR
ACAAGGTGGTGGTATGGCTG+TGG 0.564383 8_1:+15496906 Msa1181170:CDS
ACAAGGTGGTGGTATGGCTG+TGG 0.564383 8_1:+15502225 Msa1181170:three_prime_UTR
TTGCTCCCTATGATATGCCT+AGG 0.568064 8_1:+15496749 Msa1181170:CDS
GATTCAGACTATCAAAGTGA+TGG 0.568943 8_1:+15501448 Msa1181170:three_prime_UTR
ACCTCCAACAGAACCAGACA+TGG 0.571554 8_1:-15501810 None:intergenic
GTAAGAATCCATCCTCTGAT+GGG 0.571956 8_1:+15498835 Msa1181170:three_prime_UTR
GATTCGATGACTGGTTCTGT+CGG 0.572719 8_1:+15496487 None:intergenic
AGACAGAAAGCATGGTCACA+AGG 0.574248 8_1:-15499974 None:intergenic
ACCGACAAGCAGCAATCAGT+TGG 0.574383 8_1:+15496583 Msa1181170:CDS
ATCGCCTGTCGAGACTGTTA+CGG 0.574502 8_1:+15498875 Msa1181170:three_prime_UTR
CGTCTTCTTTATCTGCATTG+GGG 0.576168 8_1:-15501571 None:intergenic
TCAGAAGACGAGTCCTGCCT+AGG 0.578719 8_1:-15496766 None:intergenic
TCAGAAGACGAGTCCTGCCT+AGG 0.578719 8_1:-15502085 None:intergenic
TCTGTTGGAGGTATGCAGCA+GGG 0.579325 8_1:+15501821 Msa1181170:three_prime_UTR
CGTGACAACTTTAATGGTCA+AGG 0.581148 8_1:+15502394 Msa1181170:three_prime_UTR
CTTGACCATTAAAGTTGTCA+CGG 0.582903 8_1:-15502393 None:intergenic
GCCTCAGACTCCACTGCTCG+AGG 0.582998 8_1:+15501632 Msa1181170:three_prime_UTR
CAACATAAAATGGTTGAGCT+CGG 0.584595 8_1:-15496729 None:intergenic
CAGCATAAAATGGTTGAGCT+CGG 0.584595 8_1:-15502048 None:intergenic
CCCAATGCAGATAAAGAAGA+CGG 0.586916 8_1:+15501572 Msa1181170:three_prime_UTR
GGTTTCAACATGTGGGCCGG+AGG 0.589200 8_1:-15502310 None:intergenic
GAATCCATCCTCTGATGGGT+CGG 0.593309 8_1:+15498839 Msa1181170:three_prime_UTR
TTTGAACAAGGACAAGGTGG+TGG 0.593926 8_1:+15496895 Msa1181170:CDS
TTTGAACAAGGACAAGGTGG+TGG 0.593926 8_1:+15502214 Msa1181170:three_prime_UTR
TCATTAATGGGTTACCCACA+AGG 0.596190 8_1:+15496808 Msa1181170:CDS
TCATTAATGGGTTACCCACA+AGG 0.596190 8_1:+15502127 Msa1181170:three_prime_UTR
CACAATCGAGACAGAAAGCA+TGG 0.596409 8_1:-15499982 None:intergenic
ACTGACAAGCAGCAATCAGT+TGG 0.597368 8_1:+15501902 Msa1181170:three_prime_UTR
GAACCAGACATGGAATCTGA+AGG 0.597386 8_1:-15501800 None:intergenic
GCTCGGTCTTGCGGGAAAGG+GGG 0.598520 8_1:-15496712 None:intergenic
GCTCGGTCTTGCGGGAAAGG+GGG 0.598520 8_1:-15502031 None:intergenic
ACAAGGACAAGGTGGTGGTA+TGG 0.600214 8_1:+15496900 Msa1181170:CDS
ACAAGGACAAGGTGGTGGTA+TGG 0.600214 8_1:+15502219 Msa1181170:three_prime_UTR
ATGATGGTCAAGGTTATGGT+TGG 0.600746 8_1:+15502359 Msa1181170:three_prime_UTR
TCCTGCCTAGGCATATCATA+GGG 0.602568 8_1:-15496754 None:intergenic
TCCTGCCTAGGCATATCATA+GGG 0.602568 8_1:-15502073 None:intergenic
CCTGCCGACCCATCAGAGGA+TGG 0.603028 8_1:-15498843 None:intergenic
AACTGAACAGGTTCTTGTGG+GGG 0.604234 8_1:-15501878 None:intergenic
GTGGATCCAAGGGATTCTAA+AGG 0.606288 8_1:+15496925 Msa1181170:CDS
GTGGATCCAAGGGATTCTAA+AGG 0.606288 8_1:+15502244 Msa1181170:three_prime_UTR
AACTGAAAAGGTTCTTGTGG+GGG 0.606613 8_1:-15496559 None:intergenic
TCGATGACTGGTTCTGTCGG+AGG 0.607518 8_1:+15496490 None:intergenic
TCCTTGGTACACAGGTGTGA+AGG 0.607570 8_1:+15501413 Msa1181170:intron
GTAAACTGAAAAGGTTCTTG+TGG 0.607779 8_1:-15496562 None:intergenic
GCAACCGTAACAGTCTCGAC+AGG 0.609029 8_1:-15498879 None:intergenic
CCTGGTGATCATGGACATGA+TGG 0.612495 8_1:+15502343 Msa1181170:three_prime_UTR
AATCTGAAGGGTGATGTTGT+TGG 0.613708 8_1:-15501787 None:intergenic
CAGACTATCAAAGTGATGGA+AGG 0.614344 8_1:+15501452 Msa1181170:three_prime_UTR
GTAAACTGAACAGGTTCTTG+TGG 0.618372 8_1:-15501881 None:intergenic
GTAGTTTGGTTTCAACATGT+GGG 0.624004 8_1:-15502317 None:intergenic
AAGAATGACTTGAGACAATG+AGG 0.625934 8_1:-15501494 None:intergenic
GCAGTGGAGTCTGAGGCTGT+AGG 0.627157 8_1:-15501626 None:intergenic
AAACTGAACAGGTTCTTGTG+GGG 0.632670 8_1:-15501879 None:intergenic
CAGCAAGGACCAAATGGTCA+GGG 0.633007 8_1:-15498905 None:intergenic
AACCAGACATGGAATCTGAA+GGG 0.638886 8_1:-15501799 None:intergenic
GATAACCAAATGGCACAGGT+GGG 0.645127 8_1:-15496690 None:intergenic
GATAACCAAATGGCACAGGT+GGG 0.645127 8_1:-15502009 None:intergenic
TCTGTCGGAGGTATGCAGCA+GGG 0.647007 8_1:+15496502 Msa1181170:CDS
GACAGAAAGCATGGTCACAA+GGG 0.652892 8_1:-15499973 None:intergenic
ACTGAACAGGTTCTTGTGGG+GGG 0.661044 8_1:-15501877 None:intergenic
ACTGAAAAGGTTCTTGTGGG+GGG 0.662490 8_1:-15496558 None:intergenic
AAACTGAAAAGGTTCTTGTG+GGG 0.672282 8_1:-15496560 None:intergenic
GATCATGGACATGATGGTCA+AGG 0.690856 8_1:+15502349 Msa1181170:three_prime_UTR
ATCTGGAAGACAGAACCCGT+CGG 0.695194 8_1:+15501702 Msa1181170:three_prime_UTR
TTGCAACAGGAAGATCAGCA+AGG 0.700122 8_1:-15498920 None:intergenic
TGGGGCGAAGAAGATCGGCG+TGG 0.733508 8_1:-15501553 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTATTTTTAATATAAA+GGG - chr8_1:15498338-15498357 None:intergenic 0.0%
!!! ATATTTTATTTTTAATATAA+AGG - chr8_1:15498339-15498358 None:intergenic 0.0%
!! AATATATTACTTTACTATAA+TGG + chr8_1:15499612-15499631 Msa1181170:intron 10.0%
!!! TATTAAAAAACTTGAATTTT+TGG + chr8_1:15501279-15501298 Msa1181170:intron 10.0%
!!! ATTAAAAAACTTGAATTTTT+GGG + chr8_1:15501280-15501299 Msa1181170:intron 10.0%
!!! ATAAAATTTTCTATTACCTT+TGG - chr8_1:15497498-15497517 None:intergenic 15.0%
!!! TATTTTTAATATAAAGGGTT+TGG - chr8_1:15498333-15498352 None:intergenic 15.0%
!! TTAGATTTAAAAACAGAAAA+AGG - chr8_1:15498675-15498694 None:intergenic 15.0%
!!! TTTTTTTTGTTGATTTGATA+AGG + chr8_1:15498708-15498727 Msa1181170:intron 15.0%
!! ATACTAGTAATCTTTATATT+TGG + chr8_1:15499170-15499189 Msa1181170:intron 15.0%
!!! TAAGATATTTCTATAACAAA+AGG - chr8_1:15499340-15499359 None:intergenic 15.0%
!! CTATAAACATTTAATAAAGT+TGG + chr8_1:15499398-15499417 Msa1181170:intron 15.0%
!! TAGTAAAGTAATATATTTCA+AGG - chr8_1:15499609-15499628 None:intergenic 15.0%
!!! TAAAATTTTGATTTTGATAG+TGG + chr8_1:15499865-15499884 Msa1181170:intron 15.0%
!!! AAAATTTTGATTTTGATAGT+GGG + chr8_1:15499866-15499885 Msa1181170:intron 15.0%
!! ATTTATAAAATGATATCAAG+TGG + chr8_1:15500762-15500781 Msa1181170:intron 15.0%
!!! ATAAAATTTTCTATTACCTT+TGG - chr8_1:15497498-15497517 None:intergenic 15.0%
!! GTGGAAAAAAATACAAATAA+GGG + chr8_1:15497090-15497109 Msa1181170:intron 20.0%
!! TGGAAAAAAATACAAATAAG+GGG + chr8_1:15497091-15497110 Msa1181170:intron 20.0%
!!! AACTTCATCGTTTATTTTTT+TGG + chr8_1:15497596-15497615 Msa1181170:intron 20.0%
!! ATCGAATATATTGGAAAAAT+TGG + chr8_1:15497627-15497646 Msa1181170:intron 20.0%
!! TTGGAAAAATTGGAATAATA+TGG + chr8_1:15497637-15497656 Msa1181170:intron 20.0%
!! CACATTCATACAAAAAAAAA+TGG - chr8_1:15497677-15497696 None:intergenic 20.0%
!!! CATTTTTTTTTGTATGAATG+TGG + chr8_1:15497675-15497694 Msa1181170:intron 20.0%
!!! ATGTGTTTATATTTTGATGA+AGG - chr8_1:15497748-15497767 None:intergenic 20.0%
!! TTCTTTCATCAATAATATCT+GGG + chr8_1:15497898-15497917 Msa1181170:intron 20.0%
!! TGTTAAAGTTTGGATTTAAT+CGG - chr8_1:15497999-15498018 None:intergenic 20.0%
!!! AATAGAAAAAGAATTTTGAG+AGG - chr8_1:15498116-15498135 None:intergenic 20.0%
!! AACCCTAAATTGAAAAAAAA+GGG - chr8_1:15498370-15498389 None:intergenic 20.0%
!! AAACCCTAAATTGAAAAAAA+AGG - chr8_1:15498371-15498390 None:intergenic 20.0%
!!! TTTTCAATTTAGGGTTTATT+TGG + chr8_1:15498374-15498393 Msa1181170:intron 20.0%
!!! TTTCAATTTAGGGTTTATTT+GGG + chr8_1:15498375-15498394 Msa1181170:intron 20.0%
!! TTTATTTGATTCATGTTTCT+AGG + chr8_1:15498509-15498528 Msa1181170:intron 20.0%
!!! ATTTAGCACTTTTATTGATA+AGG + chr8_1:15498535-15498554 Msa1181170:intron 20.0%
!! CATAAACACTTATCATATAA+GGG - chr8_1:15499378-15499397 None:intergenic 20.0%
!!! TTGCATTTTTATCAGAAATT+TGG + chr8_1:15499692-15499711 Msa1181170:intron 20.0%
!! AAAAACTGCATAAGAAAAAA+AGG - chr8_1:15499758-15499777 None:intergenic 20.0%
!! AAGATAAGAAAAATACTTAC+AGG - chr8_1:15500030-15500049 None:intergenic 20.0%
!! TTTACAAAACAACTAAAAGT+GGG - chr8_1:15500270-15500289 None:intergenic 20.0%
!! ATTTACAAAACAACTAAAAG+TGG - chr8_1:15500271-15500290 None:intergenic 20.0%
!!! TAGGTGAATAATATTTCTAT+AGG + chr8_1:15500360-15500379 Msa1181170:intron 20.0%
!!! AGGTGAATAATATTTCTATA+GGG + chr8_1:15500361-15500380 Msa1181170:intron 20.0%
!!! TATCTATTTTATTGCAAAGT+GGG - chr8_1:15500632-15500651 None:intergenic 20.0%
!!! GAATTTTAAAATTGAGAGTA+CGG + chr8_1:15500816-15500835 Msa1181170:intron 20.0%
!! AATTACTAATTTACTCAGTT+AGG - chr8_1:15500979-15500998 None:intergenic 20.0%
!! ATATTGTGTGTATGTTAAAA+AGG + chr8_1:15501379-15501398 Msa1181170:intron 20.0%
!! TATTGTGTGTATGTTAAAAA+GGG + chr8_1:15501380-15501399 Msa1181170:intron 20.0%
! GGTAATTTCCTTGAAAATTT+GGG - chr8_1:15496846-15496865 None:intergenic 25.0%
!! AAAATTTGGTTTCAACATGT+GGG - chr8_1:15497001-15497020 None:intergenic 25.0%
!! AAAAATTTGGTTTCAACATG+TGG - chr8_1:15497002-15497021 None:intergenic 25.0%
! GGTGGAAAAAAATACAAATA+AGG + chr8_1:15497089-15497108 Msa1181170:intron 25.0%
! AAAAACCATGACAACTTTAA+TGG + chr8_1:15497335-15497354 Msa1181170:intron 25.0%
!! CTGCAATTTCTATTACATTT+TGG + chr8_1:15497420-15497439 Msa1181170:intron 25.0%
! TTTCCTTTATTGTTTACCAA+AGG + chr8_1:15497479-15497498 Msa1181170:intron 25.0%
! TTACCTTTGGTAAACAATAA+AGG - chr8_1:15497485-15497504 None:intergenic 25.0%
! TTGGAAAACTTGGAATAATA+TGG + chr8_1:15497567-15497586 Msa1181170:intron 25.0%
!!! TCGTTTATTTTTTTGGAGAA+TGG + chr8_1:15497603-15497622 Msa1181170:intron 25.0%
! CATACAAAAAAAAATGGATG+AGG - chr8_1:15497671-15497690 None:intergenic 25.0%
! TATAGTTCGATCTAAATCAA+TGG - chr8_1:15497709-15497728 None:intergenic 25.0%
! ATTTAGATCGAACTATATGA+CGG + chr8_1:15497712-15497731 Msa1181170:intron 25.0%
! TAGGATAAAAGATTGAAGAT+AGG - chr8_1:15497876-15497895 None:intergenic 25.0%
! TATTATTGATGAAAGAAGGT+AGG - chr8_1:15497895-15497914 None:intergenic 25.0%
! CAGATATTATTGATGAAAGA+AGG - chr8_1:15497899-15497918 None:intergenic 25.0%
! CTTCTTTCATCAATAATATC+TGG + chr8_1:15497897-15497916 Msa1181170:intron 25.0%
!!! TAATATCTGGGTGTATTTTT+TGG + chr8_1:15497910-15497929 Msa1181170:intron 25.0%
!!! GTGTATTTTTTGGAAATTTG+CGG + chr8_1:15497920-15497939 Msa1181170:intron 25.0%
! GTTAAAGTTTGGATTTAATC+GGG - chr8_1:15497998-15498017 None:intergenic 25.0%
! TAACACACAAATCGAAAATT+AGG + chr8_1:15498037-15498056 Msa1181170:intron 25.0%
! AACACACAAATCGAAAATTA+GGG + chr8_1:15498038-15498057 Msa1181170:intron 25.0%
! ACCCTAAATTGAAAAAAAAG+GGG - chr8_1:15498369-15498388 None:intergenic 25.0%
!! TTCAATTTAGGGTTTATTTG+GGG + chr8_1:15498376-15498395 Msa1181170:intron 25.0%
! CAATATTGAATTGAATCCAA+CGG - chr8_1:15498454-15498473 None:intergenic 25.0%
!! AAACAAATTTTACCATCAGA+CGG - chr8_1:15498620-15498639 None:intergenic 25.0%
! TGAATATATGCTTCACTTAT+CGG + chr8_1:15498645-15498664 Msa1181170:intron 25.0%
!!! TTTTGTTGATTTGATAAGGA+AGG + chr8_1:15498712-15498731 Msa1181170:intron 25.0%
! TCAATGCAATACTTCAAATT+GGG - chr8_1:15498765-15498784 None:intergenic 25.0%
! TTCAATGCAATACTTCAAAT+TGG - chr8_1:15498766-15498785 None:intergenic 25.0%
! ATTGAAATATGCTTCAGATT+CGG + chr8_1:15498808-15498827 Msa1181170:three_prime_UTR 25.0%
!!! CTAACCTGTTTTTTTCATTT+AGG + chr8_1:15499090-15499109 Msa1181170:intron 25.0%
!! TAATCTTTATATTTGGCCTT+AGG + chr8_1:15499177-15499196 Msa1181170:intron 25.0%
!!! AATCTTTATATTTGGCCTTA+GGG + chr8_1:15499178-15499197 Msa1181170:intron 25.0%
! GCATAAACACTTATCATATA+AGG - chr8_1:15499379-15499398 None:intergenic 25.0%
!!! TGTTTCTGCAATGAATTTTT+TGG - chr8_1:15499460-15499479 None:intergenic 25.0%
! TTACAAAACAACTAAAAGTG+GGG - chr8_1:15500269-15500288 None:intergenic 25.0%
! AATATTATTCACCTATTGAC+TGG - chr8_1:15500355-15500374 None:intergenic 25.0%
! TTTCAAAATTGTATGTCCAT+AGG - chr8_1:15500402-15500421 None:intergenic 25.0%
!! ATCTATTTTATTGCAAAGTG+GGG - chr8_1:15500631-15500650 None:intergenic 25.0%
!! GTATCTATTTTATTGCAAAG+TGG - chr8_1:15500633-15500652 None:intergenic 25.0%
! CAATAAAATAGATACTAGAG+TGG + chr8_1:15500638-15500657 Msa1181170:intron 25.0%
!! ACTAAAGTACTAAACTCTAA+TGG + chr8_1:15501095-15501114 Msa1181170:intron 25.0%
! TCCACTAATAAAAAGCTTAA+TGG + chr8_1:15501146-15501165 Msa1181170:intron 25.0%
!! ACCATTAAGCTTTTTATTAG+TGG - chr8_1:15501150-15501169 None:intergenic 25.0%
!!! AGTTTTTTAATATAAGCGTG+TGG - chr8_1:15501271-15501290 None:intergenic 25.0%
! GGTAATTTCCTTGAAAATTT+GGG - chr8_1:15496846-15496865 None:intergenic 25.0%
!! CTGCAATTTCTATTACATTT+TGG + chr8_1:15497420-15497439 Msa1181170:intron 25.0%
! TTTCCTTTATTGTTTACCAA+AGG + chr8_1:15497479-15497498 Msa1181170:intron 25.0%
! TTACCTTTGGTAAACAATAA+AGG - chr8_1:15497485-15497504 None:intergenic 25.0%
! TTGGAAAACTTGGAATAATA+TGG + chr8_1:15497567-15497586 Msa1181170:intron 25.0%
TAAACTGAAAAGGTTCTTGT+GGG - chr8_1:15496564-15496583 None:intergenic 30.0%
GGTAACCCATTAATGAATTT+GGG - chr8_1:15496804-15496823 None:intergenic 30.0%
GGGTAATTTCCTTGAAAATT+TGG - chr8_1:15496847-15496866 None:intergenic 30.0%
!! AATATACCTTTAGAATCCCT+TGG - chr8_1:15496934-15496953 None:intergenic 30.0%
! AAGGGATTCTAAAGGTATAT+TGG + chr8_1:15496933-15496952 Msa1181170:intron 30.0%
! TCTTAGGGTGGTTTTTAAAT+GGG - chr8_1:15497155-15497174 None:intergenic 30.0%
!! TTTAATGGTCAAGGTTGATA+AGG + chr8_1:15497350-15497369 Msa1181170:intron 30.0%
ATTGAATGTGTTGGAAAACT+TGG + chr8_1:15497557-15497576 Msa1181170:intron 30.0%
GAGAATGGAATCGAATATAT+TGG + chr8_1:15497618-15497637 Msa1181170:intron 30.0%
!! GAAAAAGAATTTTGAGAGGA+AGG - chr8_1:15498112-15498131 None:intergenic 30.0%
!!! TCCCCCTTTTTTTTCAATTT+AGG + chr8_1:15498364-15498383 Msa1181170:intron 30.0%
CCCTAAATTGAAAAAAAAGG+GGG - chr8_1:15498368-15498387 None:intergenic 30.0%
!!! CCCCCTTTTTTTTCAATTTA+GGG + chr8_1:15498365-15498384 Msa1181170:intron 30.0%
ATCGAATTCGATGTAATTCT+TGG - chr8_1:15498417-15498436 None:intergenic 30.0%
AATCAATTATAACCGTCTGA+TGG + chr8_1:15498605-15498624 Msa1181170:intron 30.0%
!! TTGAAGTATTGCATTGAAAG+AGG + chr8_1:15498768-15498787 Msa1181170:three_prime_UTR 30.0%
! TTTTTCTGTTGTTAGGAATG+TGG + chr8_1:15498965-15498984 Msa1181170:three_prime_UTR 30.0%
! TTTTCTGTTGTTAGGAATGT+GGG + chr8_1:15498966-15498985 Msa1181170:three_prime_UTR 30.0%
GAAGCCTAAATGAAAAAAAC+AGG - chr8_1:15499097-15499116 None:intergenic 30.0%
!!! AGGATGGTTTTAATCAAAAC+AGG + chr8_1:15499125-15499144 Msa1181170:intron 30.0%
!!! AATTTTTTGGAGTGAACACA+TGG - chr8_1:15499447-15499466 None:intergenic 30.0%
AAAAGTCAACACCAAATCAA+AGG - chr8_1:15499572-15499591 None:intergenic 30.0%
! TAACATCTAGAACTCTAAAC+AGG - chr8_1:15499794-15499813 None:intergenic 30.0%
! CTTTTCATTTTCCAGTCAAT+AGG + chr8_1:15500341-15500360 Msa1181170:intron 30.0%
AAATTGTATGTCCATAGGAA+AGG - chr8_1:15500397-15500416 None:intergenic 30.0%
TTAGAATGATGACTCAACAA+GGG - chr8_1:15500472-15500491 None:intergenic 30.0%
!! GATTTTAATCTGTGTGAAGA+TGG - chr8_1:15500547-15500566 None:intergenic 30.0%
! CCATTTTCATCTATTCAAGT+GGG - chr8_1:15500572-15500591 None:intergenic 30.0%
! ACCATTTTCATCTATTCAAG+TGG - chr8_1:15500573-15500592 None:intergenic 30.0%
! TATATCTGAGACAAAACACA+AGG - chr8_1:15500693-15500712 None:intergenic 30.0%
!! GCTGAAGAACTTTTTGTTTA+AGG + chr8_1:15500732-15500751 Msa1181170:intron 30.0%
CTAGAGTTTGGAAAAAATCT+AGG + chr8_1:15500786-15500805 Msa1181170:intron 30.0%
! TGAGTCTTATGACTTATGAT+AGG - chr8_1:15500936-15500955 None:intergenic 30.0%
TATCTGGATATAAGCTATCA+TGG - chr8_1:15501058-15501077 None:intergenic 30.0%
AAATTCTCAACATCATGATC+TGG + chr8_1:15501685-15501704 Msa1181170:three_prime_UTR 30.0%
GGTAACCCATTAATGAATTT+GGG - chr8_1:15496804-15496823 None:intergenic 30.0%
GGGTAATTTCCTTGAAAATT+TGG - chr8_1:15496847-15496866 None:intergenic 30.0%
!! AATATACCTTTAGAATCCCT+TGG - chr8_1:15496934-15496953 None:intergenic 30.0%
! AAGGGATTCTAAAGGTATAT+TGG + chr8_1:15496933-15496952 Msa1181170:intron 30.0%
AAACTGAAAAGGTTCTTGTG+GGG - chr8_1:15496563-15496582 None:intergenic 35.0%
GTAAACTGAAAAGGTTCTTG+TGG - chr8_1:15496565-15496584 None:intergenic 35.0%
TACTCAGGAAATGAGTTATC+TGG - chr8_1:15496610-15496629 None:intergenic 35.0%
CAACATAAAATGGTTGAGCT+CGG - chr8_1:15496732-15496751 None:intergenic 35.0%
TCATAGGGAGCAACATAAAA+TGG - chr8_1:15496742-15496761 None:intergenic 35.0%
TGGAGACCCAAATTCATTAA+TGG + chr8_1:15496795-15496814 Msa1181170:CDS 35.0%
GGAGACCCAAATTCATTAAT+GGG + chr8_1:15496796-15496815 Msa1181170:CDS 35.0%
GGGTAACCCATTAATGAATT+TGG - chr8_1:15496805-15496824 None:intergenic 35.0%
CTTGAAAATTTGGGCCATTT+GGG - chr8_1:15496837-15496856 None:intergenic 35.0%
! ATTCCTTTTGAACAAGGACA+AGG + chr8_1:15496889-15496908 Msa1181170:CDS 35.0%
! CTCTTAGGGTGGTTTTTAAA+TGG - chr8_1:15497156-15497175 None:intergenic 35.0%
! TTGGTGTTTAGGTGGTTTAT+CGG - chr8_1:15497234-15497253 None:intergenic 35.0%
!!! GTAGGATCTTTTTGGTGTTT+AGG - chr8_1:15497245-15497264 None:intergenic 35.0%
!!! GTTTTTACACCGTTTTGGTT+TGG - chr8_1:15497321-15497340 None:intergenic 35.0%
! TCATGGTTTTTACACCGTTT+TGG - chr8_1:15497326-15497345 None:intergenic 35.0%
CTTGACCATTAAAGTTGTCA+TGG - chr8_1:15497343-15497362 None:intergenic 35.0%
CATGACAACTTTAATGGTCA+AGG + chr8_1:15497341-15497360 Msa1181170:intron 35.0%
CTAGAATCGTCAAATGAGAA+TGG + chr8_1:15497533-15497552 Msa1181170:intron 35.0%
GAGAATGGAATTGAATGTGT+TGG + chr8_1:15497548-15497567 Msa1181170:intron 35.0%
TTCGTTCTGCAATTCAGAAA+CGG - chr8_1:15498197-15498216 None:intergenic 35.0%
! CTCAGATTTGAATAGCTTTG+AGG - chr8_1:15498223-15498242 None:intergenic 35.0%
!! TGTTGATTTGATAAGGAAGG+AGG + chr8_1:15498715-15498734 Msa1181170:intron 35.0%
!! GTTGATTTGATAAGGAAGGA+GGG + chr8_1:15498716-15498735 Msa1181170:intron 35.0%
ATTGCATTGAAAGAGGTTTG+AGG + chr8_1:15498775-15498794 Msa1181170:three_prime_UTR 35.0%
TTGCATTGAAAGAGGTTTGA+GGG + chr8_1:15498776-15498795 Msa1181170:three_prime_UTR 35.0%
!!! CTACTGCTTTTTCTGTTGTT+AGG + chr8_1:15498958-15498977 Msa1181170:three_prime_UTR 35.0%
! GATTTTCCGATTGCGATTTA+TGG + chr8_1:15499041-15499060 Msa1181170:three_prime_UTR 35.0%
TAAGCACTTGTGAAACTGTT+TGG + chr8_1:15499239-15499258 Msa1181170:intron 35.0%
AAGCACTTGTGAAACTGTTT+GGG + chr8_1:15499240-15499259 Msa1181170:intron 35.0%
AAACTGTTTGGGAGATGTTA+CGG + chr8_1:15499251-15499270 Msa1181170:intron 35.0%
! ACTTTACTATAATGGCCTTG+TGG + chr8_1:15499620-15499639 Msa1181170:intron 35.0%
TGCTAAAGAACAAAACCACA+AGG - chr8_1:15499638-15499657 None:intergenic 35.0%
!!! GCTTGGTTTGTTTTGTGATT+TGG + chr8_1:15499832-15499851 Msa1181170:intron 35.0%
CAAGGAAACTAACAAGTTCT+AGG - chr8_1:15499918-15499937 None:intergenic 35.0%
! CTTGTTAGTTTCCTTGATGT+TGG + chr8_1:15499922-15499941 Msa1181170:intron 35.0%
!! CTTGATGTTGGCTTACTATA+GGG + chr8_1:15499934-15499953 Msa1181170:intron 35.0%
TGCTAATTACTTAAGCAGTG+AGG + chr8_1:15500110-15500129 Msa1181170:intron 35.0%
GATGCATTAAACCTTTCCTA+TGG + chr8_1:15500383-15500402 Msa1181170:intron 35.0%
TAGAATGATGACTCAACAAG+GGG - chr8_1:15500471-15500490 None:intergenic 35.0%
GTTAGAATGATGACTCAACA+AGG - chr8_1:15500473-15500492 None:intergenic 35.0%
AGTTACAACTTACATGTCTG+TGG + chr8_1:15500519-15500538 Msa1181170:intron 35.0%
GTTACAACTTACATGTCTGT+GGG + chr8_1:15500520-15500539 Msa1181170:intron 35.0%
CCCACTTGAATAGATGAAAA+TGG + chr8_1:15500569-15500588 Msa1181170:intron 35.0%
! ATATCAAGTGGTCTAGAGTT+TGG + chr8_1:15500774-15500793 Msa1181170:intron 35.0%
CGTATAGTGACAGAAATATC+TGG - chr8_1:15501074-15501093 None:intergenic 35.0%
!! AGCTTTTTATTAGTGGACAC+TGG - chr8_1:15501143-15501162 None:intergenic 35.0%
GTTGCATTATGCATGCTTTA+AGG + chr8_1:15501201-15501220 Msa1181170:intron 35.0%
TTTATCACGAAAGAGCCTAT+TGG - chr8_1:15501227-15501246 None:intergenic 35.0%
AACCTTAATGTTGACCTTCA+GGG + chr8_1:15501311-15501330 Msa1181170:intron 35.0%
AACCTATCAATTATCCCTGA+AGG - chr8_1:15501328-15501347 None:intergenic 35.0%
GGATAATTGATAGGTTCCAT+GGG + chr8_1:15501332-15501351 Msa1181170:intron 35.0%
GAAAAGATAACTTCTACCCA+TGG - chr8_1:15501351-15501370 None:intergenic 35.0%
! AAAGGGTTTTTCATCTTCCT+TGG + chr8_1:15501397-15501416 Msa1181170:intron 35.0%
! CTTTGATAGTCTGAATCTTC+TGG - chr8_1:15501445-15501464 None:intergenic 35.0%
GATTCAGACTATCAAAGTGA+TGG + chr8_1:15501448-15501467 Msa1181170:three_prime_UTR 35.0%
AAGAATGACTTGAGACAATG+AGG - chr8_1:15501497-15501516 None:intergenic 35.0%
TGGAGAAAAAACTTGCCTTT+GGG - chr8_1:15501660-15501679 None:intergenic 35.0%
TGATGTTGAGAATTTGAACC+TGG - chr8_1:15501680-15501699 None:intergenic 35.0%
TAAACTGAACAGGTTCTTGT+GGG - chr8_1:15501883-15501902 None:intergenic 35.0%
TACTCAGGAAATGAGTTATC+TGG - chr8_1:15496610-15496629 None:intergenic 35.0%
TGGAGACCCAAATTCATTAA+TGG + chr8_1:15496795-15496814 Msa1181170:CDS 35.0%
GGAGACCCAAATTCATTAAT+GGG + chr8_1:15496796-15496815 Msa1181170:CDS 35.0%
GGGTAACCCATTAATGAATT+TGG - chr8_1:15496805-15496824 None:intergenic 35.0%
CTTGAAAATTTGGGCCATTT+GGG - chr8_1:15496837-15496856 None:intergenic 35.0%
! ATTCCTTTTGAACAAGGACA+AGG + chr8_1:15496889-15496908 Msa1181170:CDS 35.0%
! GTAGTTTGGTTTCAACATGT+GGG - chr8_1:15502320-15502339 None:intergenic 35.0%
! AGTAGTTTGGTTTCAACATG+TGG - chr8_1:15502321-15502340 None:intergenic 35.0%
TTGAAACCAAACTACTATCC+TGG + chr8_1:15502325-15502344 Msa1181170:three_prime_UTR 35.0%
GATAACCGTGACAACTTTAA+TGG + chr8_1:15502388-15502407 Msa1181170:three_prime_UTR 35.0%
CTTGACCATTAAAGTTGTCA+CGG - chr8_1:15497343-15497362 None:intergenic 35.0%
TTTAATGGTCAAGGCTGATA+AGG + chr8_1:15502403-15502422 Msa1181170:three_prime_UTR 35.0%
CTAGAATCGTCAAATGAGAA+TGG + chr8_1:15497533-15497552 Msa1181170:intron 35.0%
ATCGAATGTGTTGGAAAACT+TGG + chr8_1:15502612-15502631 Msa1181170:three_prime_UTR 35.0%
AACTGAAAAGGTTCTTGTGG+GGG - chr8_1:15496562-15496581 None:intergenic 40.0%
TGCTTGTCGGTAAACTGAAA+AGG - chr8_1:15496574-15496593 None:intergenic 40.0%
!! TCATTAATGGGTTACCCACA+AGG + chr8_1:15496808-15496827 Msa1181170:CDS 40.0%
CCTTGAAAATTTGGGCCATT+TGG - chr8_1:15496838-15496857 None:intergenic 40.0%
! CCAAATGGCCCAAATTTTCA+AGG + chr8_1:15496835-15496854 Msa1181170:CDS 40.0%
!! CGAGAAGCACTAATAAGCTT+GGG + chr8_1:15497068-15497087 Msa1181170:intron 40.0%
TCTGTTGTCATTCAATCACC+AGG + chr8_1:15497117-15497136 Msa1181170:intron 40.0%
TTCTCGCGTCATTACTCTTA+GGG - chr8_1:15497170-15497189 None:intergenic 40.0%
ATTCTCGCGTCATTACTCTT+AGG - chr8_1:15497171-15497190 None:intergenic 40.0%
TGGTGTTTAGGTGGTTTATC+GGG - chr8_1:15497233-15497252 None:intergenic 40.0%
!!! GGATCTTTTTGGTGTTTAGG+TGG - chr8_1:15497242-15497261 None:intergenic 40.0%
!! GAGGTCTTGTAGGATCTTTT+TGG - chr8_1:15497253-15497272 None:intergenic 40.0%
TTGTGTGTTATCGTTGAACG+CGG - chr8_1:15498027-15498046 None:intergenic 40.0%
TCTTTACACTGTCAGTGCAT+AGG - chr8_1:15498571-15498590 None:intergenic 40.0%
AGGAAGGAGGGTGAATAATT+TGG + chr8_1:15498728-15498747 Msa1181170:intron 40.0%
AGTAAGAATCCATCCTCTGA+TGG + chr8_1:15498834-15498853 Msa1181170:three_prime_UTR 40.0%
GTAAGAATCCATCCTCTGAT+GGG + chr8_1:15498835-15498854 Msa1181170:three_prime_UTR 40.0%
TTCCGATTGCGATTTATGGA+AGG + chr8_1:15499045-15499064 Msa1181170:three_prime_UTR 40.0%
AGCCTTCCATAAATCGCAAT+CGG - chr8_1:15499050-15499069 None:intergenic 40.0%
!! ATTTGGCCTTAGGGTTTGTT+TGG + chr8_1:15499187-15499206 Msa1181170:intron 40.0%
ATTGCTGGGCAGTAATTTAG+TGG + chr8_1:15499514-15499533 Msa1181170:intron 40.0%
GCAGTAATTTAGTGGAGTAG+TGG + chr8_1:15499522-15499541 Msa1181170:intron 40.0%
! GTCCTTGTTTGCCTTTGATT+TGG + chr8_1:15499558-15499577 Msa1181170:intron 40.0%
CACCAAATCAAAGGCAAACA+AGG - chr8_1:15499563-15499582 None:intergenic 40.0%
AAAACAAACCAAGCCACCTT+TGG - chr8_1:15499826-15499845 None:intergenic 40.0%
CCTATAGTAAGCCAACATCA+AGG - chr8_1:15499936-15499955 None:intergenic 40.0%
!! CCTTGATGTTGGCTTACTAT+AGG + chr8_1:15499933-15499952 Msa1181170:intron 40.0%
GCTTCAAAGCTAAGAGTCAA+TGG - chr8_1:15500082-15500101 None:intergenic 40.0%
TCAACAAGGGGAAAAGTAGA+GGG - chr8_1:15500459-15500478 None:intergenic 40.0%
GAAAATGGTGTCCATGCTAT+TGG + chr8_1:15500584-15500603 Msa1181170:intron 40.0%
CTACATACATGCCAATAGCA+TGG - chr8_1:15500598-15500617 None:intergenic 40.0%
!! ATGCATGCTTTAAGGCCAAT+AGG + chr8_1:15501209-15501228 Msa1181170:intron 40.0%
CAACCTTAATGTTGACCTTC+AGG + chr8_1:15501310-15501329 Msa1181170:intron 40.0%
ATCCCTGAAGGTCAACATTA+AGG - chr8_1:15501316-15501335 None:intergenic 40.0%
GACCTTCAGGGATAATTGAT+AGG + chr8_1:15501323-15501342 Msa1181170:intron 40.0%
GGGATAATTGATAGGTTCCA+TGG + chr8_1:15501331-15501350 Msa1181170:intron 40.0%
TTTCATCTTCCTTGGTACAC+AGG + chr8_1:15501405-15501424 Msa1181170:intron 40.0%
! CAGACTATCAAAGTGATGGA+AGG + chr8_1:15501452-15501471 Msa1181170:three_prime_UTR 40.0%
AATGAGGAGCTGCACATATT+AGG - chr8_1:15501481-15501500 None:intergenic 40.0%
CGTCTTCTTTATCTGCATTG+GGG - chr8_1:15501574-15501593 None:intergenic 40.0%
CCGTCTTCTTTATCTGCATT+GGG - chr8_1:15501575-15501594 None:intergenic 40.0%
CCCAATGCAGATAAAGAAGA+CGG + chr8_1:15501572-15501591 Msa1181170:three_prime_UTR 40.0%
TCCGTCTTCTTTATCTGCAT+TGG - chr8_1:15501576-15501595 None:intergenic 40.0%
GAGAAAAAACTTGCCTTTGG+GGG - chr8_1:15501658-15501677 None:intergenic 40.0%
GGAGAAAAAACTTGCCTTTG+GGG - chr8_1:15501659-15501678 None:intergenic 40.0%
CTGGAGAAAAAACTTGCCTT+TGG - chr8_1:15501661-15501680 None:intergenic 40.0%
!!! CAAAGGCAAGTTTTTTCTCC+AGG + chr8_1:15501659-15501678 Msa1181170:three_prime_UTR 40.0%
CTTGAAAGAGCTTGATCTCT+TGG - chr8_1:15501734-15501753 None:intergenic 40.0%
CAAGAGATCAAGCTCTTTCA+AGG + chr8_1:15501732-15501751 Msa1181170:three_prime_UTR 40.0%
!! CAGCAAAAGCCACCATTTTT+CGG + chr8_1:15501764-15501783 Msa1181170:three_prime_UTR 40.0%
TGATGTTGTTGGCCGAAAAA+TGG - chr8_1:15501779-15501798 None:intergenic 40.0%
AATCTGAAGGGTGATGTTGT+TGG - chr8_1:15501790-15501809 None:intergenic 40.0%
AACCAGACATGGAATCTGAA+GGG - chr8_1:15501802-15501821 None:intergenic 40.0%
AAACTGAACAGGTTCTTGTG+GGG - chr8_1:15501882-15501901 None:intergenic 40.0%
GTAAACTGAACAGGTTCTTG+TGG - chr8_1:15501884-15501903 None:intergenic 40.0%
TGCTTGTCAGTAAACTGAAC+AGG - chr8_1:15501893-15501912 None:intergenic 40.0%
CAGCATAAAATGGTTGAGCT+CGG - chr8_1:15502051-15502070 None:intergenic 40.0%
TCATAGGGAGCAGCATAAAA+TGG - chr8_1:15502061-15502080 None:intergenic 40.0%
!! TCATTAATGGGTTACCCACA+AGG + chr8_1:15496808-15496827 Msa1181170:CDS 40.0%
CCTTGAAAATTTGGGCCATT+TGG - chr8_1:15496838-15496857 None:intergenic 40.0%
! CCAAATGGCCCAAATTTTCA+AGG + chr8_1:15496835-15496854 Msa1181170:CDS 40.0%
TGATCACCAGGATAGTAGTT+TGG - chr8_1:15502334-15502353 None:intergenic 40.0%
AACTACTATCCTGGTGATCA+TGG + chr8_1:15502334-15502353 Msa1181170:three_prime_UTR 40.0%
ATGATGGTCAAGGTTATGGT+TGG + chr8_1:15502359-15502378 Msa1181170:three_prime_UTR 40.0%
CGTGACAACTTTAATGGTCA+AGG + chr8_1:15502394-15502413 Msa1181170:three_prime_UTR 40.0%
GAGAATGGAATCGAATGTGT+TGG + chr8_1:15502603-15502622 Msa1181170:three_prime_UTR 40.0%
ACTGAAAAGGTTCTTGTGGG+GGG - chr8_1:15496561-15496580 None:intergenic 45.0%
! ACCAACTGATTGCTGCTTGT+CGG - chr8_1:15496587-15496606 None:intergenic 45.0%
GATAACCAAATGGCACAGGT+GGG - chr8_1:15496693-15496712 None:intergenic 45.0%
TTGCTCCCTATGATATGCCT+AGG + chr8_1:15496749-15496768 Msa1181170:CDS 45.0%
TCCTGCCTAGGCATATCATA+GGG - chr8_1:15496757-15496776 None:intergenic 45.0%
CAGGACTCGTCTTCTGATAT+TGG + chr8_1:15496772-15496791 Msa1181170:CDS 45.0%
GACTCGTCTTCTGATATTGG+TGG + chr8_1:15496775-15496794 Msa1181170:CDS 45.0%
! GCAGGCATTCCTTTTGAACA+AGG + chr8_1:15496883-15496902 Msa1181170:CDS 45.0%
CCACCTTGTCCTTGTTCAAA+AGG - chr8_1:15496895-15496914 None:intergenic 45.0%
! CCTTTTGAACAAGGACAAGG+TGG + chr8_1:15496892-15496911 Msa1181170:CDS 45.0%
TTTGAACAAGGACAAGGTGG+TGG + chr8_1:15496895-15496914 Msa1181170:CDS 45.0%
GTGGATCCAAGGGATTCTAA+AGG + chr8_1:15496925-15496944 Msa1181170:CDS 45.0%
! TTTGGTTTCAACATGTGGGC+TGG - chr8_1:15496997-15497016 None:intergenic 45.0%
CTTATTAGTGCTTCTCGCAC+GGG - chr8_1:15497065-15497084 None:intergenic 45.0%
GCTTATTAGTGCTTCTCGCA+CGG - chr8_1:15497066-15497085 None:intergenic 45.0%
!! GCGAGAAGCACTAATAAGCT+TGG + chr8_1:15497067-15497086 Msa1181170:intron 45.0%
! GAAGCACTAATAAGCTTGGG+TGG + chr8_1:15497071-15497090 Msa1181170:intron 45.0%
!! AATGGGTTTTTGTTCGAGCC+TGG - chr8_1:15497138-15497157 None:intergenic 45.0%
TCTGCTGAAGTTCTTGTGCT+AGG - chr8_1:15497281-15497300 None:intergenic 45.0%
TTCAGCAGAGACTATTCAGC+AGG + chr8_1:15497292-15497311 Msa1181170:intron 45.0%
TCAGCAGAGACTATTCAGCA+GGG + chr8_1:15497293-15497312 Msa1181170:intron 45.0%
AGCAGGGAACCAAACCAAAA+CGG + chr8_1:15497309-15497328 Msa1181170:intron 45.0%
TCGGGCAACAAATGAAGAGT+GGG - chr8_1:15497980-15497999 None:intergenic 45.0%
ATCGGGCAACAAATGAAGAG+TGG - chr8_1:15497981-15498000 None:intergenic 45.0%
CGCGGGTCAATGTTAAAGTT+TGG - chr8_1:15498009-15498028 None:intergenic 45.0%
TGTGTGTTATCGTTGAACGC+GGG - chr8_1:15498026-15498045 None:intergenic 45.0%
!! AATCCAACGGTGTCACAATG+GGG - chr8_1:15498441-15498460 None:intergenic 45.0%
!! GAATCCAACGGTGTCACAAT+GGG - chr8_1:15498442-15498461 None:intergenic 45.0%
!! TGAATCCAACGGTGTCACAA+TGG - chr8_1:15498443-15498462 None:intergenic 45.0%
GAAGATCAGCAAGGACCAAA+TGG - chr8_1:15498914-15498933 None:intergenic 45.0%
TTGCAACAGGAAGATCAGCA+AGG - chr8_1:15498923-15498942 None:intergenic 45.0%
TGCTGATCTTCCTGTTGCAA+AGG + chr8_1:15498923-15498942 Msa1181170:three_prime_UTR 45.0%
GCTGATCTTCCTGTTGCAAA+GGG + chr8_1:15498924-15498943 Msa1181170:three_prime_UTR 45.0%
! CTTCCTGTTGCAAAGGGTAT+TGG + chr8_1:15498930-15498949 Msa1181170:three_prime_UTR 45.0%
GTACCAATACCCTTTGCAAC+AGG - chr8_1:15498936-15498955 None:intergenic 45.0%
GATTGCGATTTATGGAAGGC+TGG + chr8_1:15499049-15499068 Msa1181170:three_prime_UTR 45.0%
CATTTAGGCTTCTGCTTGCT+AGG + chr8_1:15499105-15499124 Msa1181170:intron 45.0%
GTCAAGCCAAACAAACCCTA+AGG - chr8_1:15499196-15499215 None:intergenic 45.0%
GTTACGGAAACAAGCTCTCT+AGG + chr8_1:15499267-15499286 Msa1181170:intron 45.0%
AAGCATGCTAGCTGAATTGC+TGG + chr8_1:15499499-15499518 Msa1181170:intron 45.0%
AGCATGCTAGCTGAATTGCT+GGG + chr8_1:15499500-15499519 Msa1181170:intron 45.0%
! GACAGAAAGCATGGTCACAA+GGG - chr8_1:15499976-15499995 None:intergenic 45.0%
! AGACAGAAAGCATGGTCACA+AGG - chr8_1:15499977-15499996 None:intergenic 45.0%
CACAATCGAGACAGAAAGCA+TGG - chr8_1:15499985-15500004 None:intergenic 45.0%
CGAACAAGACGATTAGGACA+CGG - chr8_1:15500164-15500183 None:intergenic 45.0%
AGCATGCGAACAAGACGATT+AGG - chr8_1:15500170-15500189 None:intergenic 45.0%
CTCAACAAGGGGAAAAGTAG+AGG - chr8_1:15500460-15500479 None:intergenic 45.0%
TGAGCCTATGTGCAAGTGTA+AGG + chr8_1:15501176-15501195 Msa1181170:intron 45.0%
ACAGCCTTACACTTGCACAT+AGG - chr8_1:15501183-15501202 None:intergenic 45.0%
GAAAGAGCTTGATCTCTTGG+TGG - chr8_1:15501731-15501750 None:intergenic 45.0%
TGTTGTTGGCCGAAAAATGG+TGG - chr8_1:15501776-15501795 None:intergenic 45.0%
GAACCAGACATGGAATCTGA+AGG - chr8_1:15501803-15501822 None:intergenic 45.0%
!! GATTCCATGTCTGGTTCTGT+TGG + chr8_1:15501806-15501825 Msa1181170:three_prime_UTR 45.0%
AACTGAACAGGTTCTTGTGG+GGG - chr8_1:15501881-15501900 None:intergenic 45.0%
ACTGACAAGCAGCAATCAGT+TGG + chr8_1:15501902-15501921 Msa1181170:three_prime_UTR 45.0%
GATAACCAAATGGCACAGGT+GGG - chr8_1:15496693-15496712 None:intergenic 45.0%
TCCTGCCTAGGCATATCATA+GGG - chr8_1:15496757-15496776 None:intergenic 45.0%
CAGGACTCGTCTTCTGATAT+TGG + chr8_1:15496772-15496791 Msa1181170:CDS 45.0%
GACTCGTCTTCTGATATTGG+TGG + chr8_1:15496775-15496794 Msa1181170:CDS 45.0%
! GCAGGCATTCCTTTTGAACA+AGG + chr8_1:15496883-15496902 Msa1181170:CDS 45.0%
CCACCTTGTCCTTGTTCAAA+AGG - chr8_1:15496895-15496914 None:intergenic 45.0%
! CCTTTTGAACAAGGACAAGG+TGG + chr8_1:15496892-15496911 Msa1181170:CDS 45.0%
TTTGAACAAGGACAAGGTGG+TGG + chr8_1:15496895-15496914 Msa1181170:CDS 45.0%
GTGGATCCAAGGGATTCTAA+AGG + chr8_1:15496925-15496944 Msa1181170:CDS 45.0%
! TTTGGTTTCAACATGTGGGC+CGG - chr8_1:15496997-15497016 None:intergenic 45.0%
GATCATGGACATGATGGTCA+AGG + chr8_1:15502349-15502368 Msa1181170:three_prime_UTR 45.0%
GGACATGATGGTCAAGGTTA+TGG + chr8_1:15502355-15502374 Msa1181170:three_prime_UTR 45.0%
!! TCAAAAAAAAAAAAAAAATT+TGG - chr8_1:15497015-15497034 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTGAAA+CGG + chr8_1:15497017-15497036 Msa1181170:intron 5.0%
!! TTAAAAAAATTATTCTAATA+GGG - chr8_1:15497822-15497841 None:intergenic 5.0%
!! ATTAAAAAAATTATTCTAAT+AGG - chr8_1:15497823-15497842 None:intergenic 5.0%
GCTGCATGTCGAAACTTTGC+TGG - chr8_1:15496534-15496553 None:intergenic 50.0%
ACCGACAAGCAGCAATCAGT+TGG + chr8_1:15496583-15496602 Msa1181170:CDS 50.0%
GGGTGCATTGTTGGATACTC+AGG - chr8_1:15496625-15496644 None:intergenic 50.0%
!! GAACATTGGTGGGTTGTGCA+GGG - chr8_1:15496645-15496664 None:intergenic 50.0%
! TCAGCATTGGGTTTGGGTGT+GGG - chr8_1:15496669-15496688 None:intergenic 50.0%
! TTCAGCATTGGGTTTGGGTG+TGG - chr8_1:15496670-15496689 None:intergenic 50.0%
! GTGGGTTCAGCATTGGGTTT+GGG - chr8_1:15496675-15496694 None:intergenic 50.0%
GGATAACCAAATGGCACAGG+TGG - chr8_1:15496694-15496713 None:intergenic 50.0%
GGGAAAGGGGGATAACCAAA+TGG - chr8_1:15496703-15496722 None:intergenic 50.0%
AATGGTTGAGCTCGGTCTTG+CGG - chr8_1:15496724-15496743 None:intergenic 50.0%
TCCCTATGATATGCCTAGGC+AGG + chr8_1:15496753-15496772 Msa1181170:CDS 50.0%
GTCCTGCCTAGGCATATCAT+AGG - chr8_1:15496758-15496777 None:intergenic 50.0%
! TACCCACAAGGTGTCCCAAA+TGG + chr8_1:15496820-15496839 Msa1181170:CDS 50.0%
! ACAAGGACAAGGTGGTGGTA+TGG + chr8_1:15496900-15496919 Msa1181170:CDS 50.0%
TGGTATGGCTGTGGATCCAA+GGG + chr8_1:15496915-15496934 Msa1181170:CDS 50.0%
TCGCGTCATTACTCTTAGGG+TGG - chr8_1:15497167-15497186 None:intergenic 50.0%
! TTTATCGGGTGATGACGCAG+GGG - chr8_1:15497219-15497238 None:intergenic 50.0%
! GTTTATCGGGTGATGACGCA+GGG - chr8_1:15497220-15497239 None:intergenic 50.0%
GCTGAAGTTCTTGTGCTAGG+CGG - chr8_1:15497278-15497297 None:intergenic 50.0%
!! ATCCAACGGTGTCACAATGG+GGG - chr8_1:15498440-15498459 None:intergenic 50.0%
! GAATCCATCCTCTGATGGGT+CGG + chr8_1:15498839-15498858 Msa1181170:three_prime_UTR 50.0%
ATCGCCTGTCGAGACTGTTA+CGG + chr8_1:15498875-15498894 Msa1181170:three_prime_UTR 50.0%
CAGCAAGGACCAAATGGTCA+GGG - chr8_1:15498908-15498927 None:intergenic 50.0%
TCAGCAAGGACCAAATGGTC+AGG - chr8_1:15498909-15498928 None:intergenic 50.0%
AATGAACTCGCTCACCAAGC+TGG - chr8_1:15499007-15499026 None:intergenic 50.0%
! TAGGCTTCTGCTTGCTAGGA+TGG + chr8_1:15499109-15499128 Msa1181170:intron 50.0%
GATGTTATGCACGCCTCCAA+AGG + chr8_1:15499807-15499826 Msa1181170:intron 50.0%
ACAAACCAAGCCACCTTTGG+AGG - chr8_1:15499823-15499842 None:intergenic 50.0%
TCAGTTAGGCTGAGTCAGCT+AGG - chr8_1:15500965-15500984 None:intergenic 50.0%
TCCTTGGTACACAGGTGTGA+AGG + chr8_1:15501413-15501432 Msa1181170:intron 50.0%
TCCTTCACACCTGTGTACCA+AGG - chr8_1:15501417-15501436 None:intergenic 50.0%
GAAGATCGGCGTGGAATTCA+TGG - chr8_1:15501547-15501566 None:intergenic 50.0%
TGCATTGGGGCGAAGAAGAT+CGG - chr8_1:15501561-15501580 None:intergenic 50.0%
ATCTGGAAGACAGAACCCGT+CGG + chr8_1:15501702-15501721 Msa1181170:three_prime_UTR 50.0%
GATCAAGCTCTTTCAAGGCC+AGG + chr8_1:15501737-15501756 Msa1181170:three_prime_UTR 50.0%
CACCCTTCAGATTCCATGTC+TGG + chr8_1:15501797-15501816 Msa1181170:three_prime_UTR 50.0%
!! TCCATGTCTGGTTCTGTTGG+AGG + chr8_1:15501809-15501828 Msa1181170:three_prime_UTR 50.0%
ACCTCCAACAGAACCAGACA+TGG - chr8_1:15501813-15501832 None:intergenic 50.0%
! TTCTGTTGGAGGTATGCAGC+AGG + chr8_1:15501820-15501839 Msa1181170:three_prime_UTR 50.0%
! TCTGTTGGAGGTATGCAGCA+GGG + chr8_1:15501821-15501840 Msa1181170:three_prime_UTR 50.0%
GCTGCATGTCGAAACTTTGC+TGG - chr8_1:15496534-15496553 None:intergenic 50.0%
ACTGAACAGGTTCTTGTGGG+GGG - chr8_1:15501880-15501899 None:intergenic 50.0%
GGGTGCATTGTTGGATACTC+AGG - chr8_1:15496625-15496644 None:intergenic 50.0%
GAACATTGCTGGGTTGTGCA+GGG - chr8_1:15501964-15501983 None:intergenic 50.0%
AGAACATTGCTGGGTTGTGC+AGG - chr8_1:15501965-15501984 None:intergenic 50.0%
! TCAGCATTGGGTTTGGGTGT+GGG - chr8_1:15496669-15496688 None:intergenic 50.0%
! TTCAGCATTGGGTTTGGGTG+TGG - chr8_1:15496670-15496689 None:intergenic 50.0%
! GTGGGTTCAGCATTGGGTTT+GGG - chr8_1:15496675-15496694 None:intergenic 50.0%
GGATAACCAAATGGCACAGG+TGG - chr8_1:15496694-15496713 None:intergenic 50.0%
GGGAAAGGGGGATAACCAAA+TGG - chr8_1:15496703-15496722 None:intergenic 50.0%
AATGGTTGAGCTCGGTCTTG+CGG - chr8_1:15496724-15496743 None:intergenic 50.0%
CTGCTCCCTATGATATGCCT+AGG + chr8_1:15502068-15502087 Msa1181170:three_prime_UTR 50.0%
TCCCTATGATATGCCTAGGC+AGG + chr8_1:15496753-15496772 Msa1181170:CDS 50.0%
GTCCTGCCTAGGCATATCAT+AGG - chr8_1:15496758-15496777 None:intergenic 50.0%
! TACCCACAAGGTGTCCCAAA+TGG + chr8_1:15496820-15496839 Msa1181170:CDS 50.0%
! ACAAGGACAAGGTGGTGGTA+TGG + chr8_1:15496900-15496919 Msa1181170:CDS 50.0%
TGGTATGGCTGTGGATCCAA+GGG + chr8_1:15496915-15496934 Msa1181170:CDS 50.0%
CCATCATGTCCATGATCACC+AGG - chr8_1:15502346-15502365 None:intergenic 50.0%
CCTGGTGATCATGGACATGA+TGG + chr8_1:15502343-15502362 Msa1181170:three_prime_UTR 50.0%
! TTCTGTCGGAGGTATGCAGC+AGG + chr8_1:15496501-15496520 Msa1181170:CDS 55.0%
! TCTGTCGGAGGTATGCAGCA+GGG + chr8_1:15496502-15496521 Msa1181170:CDS 55.0%
GGTTGTGCAGGGTGCATTGT+TGG - chr8_1:15496634-15496653 None:intergenic 55.0%
!! GGAACATTGGTGGGTTGTGC+AGG - chr8_1:15496646-15496665 None:intergenic 55.0%
GTTTGGGTGTGGGGGAACAT+TGG - chr8_1:15496659-15496678 None:intergenic 55.0%
! AGCATTGGGTTTGGGTGTGG+GGG - chr8_1:15496667-15496686 None:intergenic 55.0%
! CAGCATTGGGTTTGGGTGTG+GGG - chr8_1:15496668-15496687 None:intergenic 55.0%
! GGTGGGTTCAGCATTGGGTT+TGG - chr8_1:15496676-15496695 None:intergenic 55.0%
! GCACAGGTGGGTTCAGCATT+GGG - chr8_1:15496681-15496700 None:intergenic 55.0%
! CTGAACCCACCTGTGCCATT+TGG + chr8_1:15496685-15496704 Msa1181170:CDS 55.0%
GGGGGATAACCAAATGGCAC+AGG - chr8_1:15496697-15496716 None:intergenic 55.0%
ATGGTTGAGCTCGGTCTTGC+GGG - chr8_1:15496723-15496742 None:intergenic 55.0%
TCAGAAGACGAGTCCTGCCT+AGG - chr8_1:15496769-15496788 None:intergenic 55.0%
! GGCCATTTGGGACACCTTGT+GGG - chr8_1:15496825-15496844 None:intergenic 55.0%
AAGGAAATTACCCCCAGCCC+TGG + chr8_1:15496854-15496873 Msa1181170:CDS 55.0%
GGAATGCCTGCTGCATTCCA+GGG - chr8_1:15496874-15496893 None:intergenic 55.0%
AGGAATGCCTGCTGCATTCC+AGG - chr8_1:15496875-15496894 None:intergenic 55.0%
! ACAAGGTGGTGGTATGGCTG+TGG + chr8_1:15496906-15496925 Msa1181170:CDS 55.0%
GTGGTATGGCTGTGGATCCA+AGG + chr8_1:15496914-15496933 Msa1181170:CDS 55.0%
!! TTCAACATGTGGGCTGGAGG+TGG - chr8_1:15496991-15497010 None:intergenic 55.0%
!! GGTTTCAACATGTGGGCTGG+AGG - chr8_1:15496994-15497013 None:intergenic 55.0%
! GGTTTATCGGGTGATGACGC+AGG - chr8_1:15497221-15497240 None:intergenic 55.0%
! CTAGGCGGTTGAGGTCTTGT+AGG - chr8_1:15497263-15497282 None:intergenic 55.0%
GTTCTTGTGCTAGGCGGTTG+AGG - chr8_1:15497272-15497291 None:intergenic 55.0%
ATCCCCCATTGTGACACCGT+TGG + chr8_1:15498435-15498454 Msa1181170:intron 55.0%
GCAACCGTAACAGTCTCGAC+AGG - chr8_1:15498882-15498901 None:intergenic 55.0%
AAGGACCAAATGGTCAGGGC+AGG - chr8_1:15498904-15498923 None:intergenic 55.0%
GTTATGCACGCCTCCAAAGG+TGG + chr8_1:15499810-15499829 Msa1181170:intron 55.0%
ACGATTAGGACACGGAGCAG+TGG - chr8_1:15500156-15500175 None:intergenic 55.0%
! ATCTCTTGGTGGTTGCCGAC+GGG - chr8_1:15501720-15501739 None:intergenic 55.0%
! GATCTCTTGGTGGTTGCCGA+CGG - chr8_1:15501721-15501740 None:intergenic 55.0%
! GGTGGCTTTTGCTGCATTCC+TGG - chr8_1:15501758-15501777 None:intergenic 55.0%
GGTTGTGCAGGGTGCATTGT+TGG - chr8_1:15496634-15496653 None:intergenic 55.0%
GGGTGTGGGAGAACATTGCT+GGG - chr8_1:15501974-15501993 None:intergenic 55.0%
TGGGTGTGGGAGAACATTGC+TGG - chr8_1:15501975-15501994 None:intergenic 55.0%
! GGTGGGTTCAGCATTGGGTT+TGG - chr8_1:15496676-15496695 None:intergenic 55.0%
! GCACAGGTGGGTTCAGCATT+GGG - chr8_1:15496681-15496700 None:intergenic 55.0%
! CTGAACCCACCTGTGCCATT+TGG + chr8_1:15496685-15496704 Msa1181170:CDS 55.0%
GGGGGATAACCAAATGGCAC+AGG - chr8_1:15496697-15496716 None:intergenic 55.0%
ATGGTTGAGCTCGGTCTTGC+GGG - chr8_1:15496723-15496742 None:intergenic 55.0%
TCAGAAGACGAGTCCTGCCT+AGG - chr8_1:15496769-15496788 None:intergenic 55.0%
! GGCCATTTGGGACACCTTGT+GGG - chr8_1:15496825-15496844 None:intergenic 55.0%
AAGGAAATTACCCCCAGCCC+TGG + chr8_1:15496854-15496873 Msa1181170:CDS 55.0%
GGAATGCCTGCTGCATTCCA+GGG - chr8_1:15496874-15496893 None:intergenic 55.0%
AGGAATGCCTGCTGCATTCC+AGG - chr8_1:15496875-15496894 None:intergenic 55.0%
! ACAAGGTGGTGGTATGGCTG+TGG + chr8_1:15496906-15496925 Msa1181170:CDS 55.0%
GTGGTATGGCTGTGGATCCA+AGG + chr8_1:15496914-15496933 Msa1181170:CDS 55.0%
GGGTGTGGGGGAACATTGGT+GGG - chr8_1:15496655-15496674 None:intergenic 60.0%
TGGGTGTGGGGGAACATTGG+TGG - chr8_1:15496656-15496675 None:intergenic 60.0%
! GGCACAGGTGGGTTCAGCAT+TGG - chr8_1:15496682-15496701 None:intergenic 60.0%
AGCTCGGTCTTGCGGGAAAG+GGG - chr8_1:15496716-15496735 None:intergenic 60.0%
GAGCTCGGTCTTGCGGGAAA+GGG - chr8_1:15496717-15496736 None:intergenic 60.0%
TGAGCTCGGTCTTGCGGGAA+AGG - chr8_1:15496718-15496737 None:intergenic 60.0%
! GGGCCATTTGGGACACCTTG+TGG - chr8_1:15496826-15496845 None:intergenic 60.0%
!! AACATGTGGGCTGGAGGTGG+TGG - chr8_1:15496988-15497007 None:intergenic 60.0%
GGTTGCCTGCCCTGACCATT+TGG + chr8_1:15498896-15498915 Msa1181170:three_prime_UTR 60.0%
! GCAGTGGAGTCTGAGGCTGT+AGG - chr8_1:15501629-15501648 None:intergenic 60.0%
! GGCACAGGTGGGTTCAGCAT+TGG - chr8_1:15496682-15496701 None:intergenic 60.0%
AGCTCGGTCTTGCGGGAAAG+GGG - chr8_1:15496716-15496735 None:intergenic 60.0%
GAGCTCGGTCTTGCGGGAAA+GGG - chr8_1:15496717-15496736 None:intergenic 60.0%
TGAGCTCGGTCTTGCGGGAA+AGG - chr8_1:15496718-15496737 None:intergenic 60.0%
! GGGCCATTTGGGACACCTTG+TGG - chr8_1:15496826-15496845 None:intergenic 60.0%
TTCAACATGTGGGCCGGAGG+TGG - chr8_1:15502310-15502329 None:intergenic 60.0%
GGTTTCAACATGTGGGCCGG+AGG - chr8_1:15502313-15502332 None:intergenic 60.0%
GCTCGGTCTTGCGGGAAAGG+GGG - chr8_1:15496715-15496734 None:intergenic 65.0%
CTGCTGCATTCCAGGGCTGG+GGG - chr8_1:15496867-15496886 None:intergenic 65.0%
CCTGCTGCATTCCAGGGCTG+GGG - chr8_1:15496868-15496887 None:intergenic 65.0%
GCCTGCTGCATTCCAGGGCT+GGG - chr8_1:15496869-15496888 None:intergenic 65.0%
TGCCTGCTGCATTCCAGGGC+TGG - chr8_1:15496870-15496889 None:intergenic 65.0%
!! GGTGGTGGTGGGAGAGGCAT+GGG - chr8_1:15496967-15496986 None:intergenic 65.0%
!! TGGTGGTGGTGGGAGAGGCA+TGG - chr8_1:15496968-15496987 None:intergenic 65.0%
!! CTGGAGGTGGTGGTGGTGGT+GGG - chr8_1:15496978-15496997 None:intergenic 65.0%
!! ATGTGGGCTGGAGGTGGTGG+TGG - chr8_1:15496985-15497004 None:intergenic 65.0%
TGCTTCTCGCACGGGCTTCG+CGG - chr8_1:15497057-15497076 None:intergenic 65.0%
CCTGCCGACCCATCAGAGGA+TGG - chr8_1:15498846-15498865 None:intergenic 65.0%
! CCATCCTCTGATGGGTCGGC+AGG + chr8_1:15498843-15498862 Msa1181170:three_prime_UTR 65.0%
CGTAGATCCCGTCGCCAGCT+TGG + chr8_1:15498990-15499009 Msa1181170:three_prime_UTR 65.0%
TCGCTCACCAAGCTGGCGAC+GGG - chr8_1:15499000-15499019 None:intergenic 65.0%
CTCGCTCACCAAGCTGGCGA+CGG - chr8_1:15499001-15499020 None:intergenic 65.0%
GCACGCCTCCAAAGGTGGCT+TGG + chr8_1:15499815-15499834 Msa1181170:intron 65.0%
TGGGGCGAAGAAGATCGGCG+TGG - chr8_1:15501556-15501575 None:intergenic 65.0%
GCCTCAGACTCCACTGCTCG+AGG + chr8_1:15501632-15501651 Msa1181170:three_prime_UTR 65.0%
GCCTCGAGCAGTGGAGTCTG+AGG - chr8_1:15501636-15501655 None:intergenic 65.0%
GCTCGGTCTTGCGGGAAAGG+GGG - chr8_1:15496715-15496734 None:intergenic 65.0%
CTGCTGCATTCCAGGGCTGG+GGG - chr8_1:15496867-15496886 None:intergenic 65.0%
CCTGCTGCATTCCAGGGCTG+GGG - chr8_1:15496868-15496887 None:intergenic 65.0%
GCCTGCTGCATTCCAGGGCT+GGG - chr8_1:15496869-15496888 None:intergenic 65.0%
TGCCTGCTGCATTCCAGGGC+TGG - chr8_1:15496870-15496889 None:intergenic 65.0%
AACATGTGGGCCGGAGGTGG+TGG - chr8_1:15502307-15502326 None:intergenic 65.0%
CCCCAGCCCTGGAATGCAGC+AGG + chr8_1:15496865-15496884 Msa1181170:CDS 70.0%
!! GGTGGTGGTGGTGGTGGGAG+AGG - chr8_1:15496973-15496992 None:intergenic 70.0%
!! GCTGGAGGTGGTGGTGGTGG+TGG - chr8_1:15496979-15496998 None:intergenic 70.0%
!! TGGGCTGGAGGTGGTGGTGG+TGG - chr8_1:15496982-15497001 None:intergenic 70.0%
CACGCCTGCCGACCCATCAG+AGG - chr8_1:15498850-15498869 None:intergenic 70.0%
! CCTTTGGGGGCCTCGAGCAG+TGG - chr8_1:15501645-15501664 None:intergenic 70.0%
CCACTGCTCGAGGCCCCCAA+AGG + chr8_1:15501642-15501661 Msa1181170:three_prime_UTR 70.0%
CCCCAGCCCTGGAATGCAGC+AGG + chr8_1:15496865-15496884 Msa1181170:CDS 70.0%
!! GGTGGTGGCGGGAGAGGCAT+GGG - chr8_1:15502286-15502305 None:intergenic 70.0%
!! TGGTGGTGGCGGGAGAGGCA+TGG - chr8_1:15502287-15502306 None:intergenic 70.0%
! ATGTGGGCCGGAGGTGGTGG+TGG - chr8_1:15502304-15502323 None:intergenic 70.0%
! GGCGGGAGAGGCATGGGCTG+TGG - chr8_1:15502280-15502299 None:intergenic 75.0%
!! GGTGGTGGTGGTGGCGGGAG+AGG - chr8_1:15502292-15502311 None:intergenic 75.0%
!! CCGGAGGTGGTGGTGGTGGC+GGG - chr8_1:15502297-15502316 None:intergenic 75.0%
CCCGCCACCACCACCACCTC+CGG + chr8_1:15502294-15502313 Msa1181170:three_prime_UTR 75.0%
!! GCCGGAGGTGGTGGTGGTGG+CGG - chr8_1:15502298-15502317 None:intergenic 75.0%
!! TGGGCCGGAGGTGGTGGTGG+TGG - chr8_1:15502301-15502320 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 15496493 15502671 15496493 ID=Msa1181170;Name=Msa1181170
chr8_1 mRNA 15496493 15502671 15496493 ID=Msa1181170-mRNA-1;Parent=Msa1181170;Name=Msa1181170-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.75|0.6|1|0.5|0.6|5|1629|187
chr8_1 exon 15496493 15496946 15496493 ID=Msa1181170-mRNA-1:exon:5816;Parent=Msa1181170-mRNA-1
chr8_1 exon 15498188 15498281 15498188 ID=Msa1181170-mRNA-1:exon:5817;Parent=Msa1181170-mRNA-1
chr8_1 exon 15498730 15499070 15498730 ID=Msa1181170-mRNA-1:exon:5818;Parent=Msa1181170-mRNA-1
chr8_1 exon 15499971 15500029 15499971 ID=Msa1181170-mRNA-1:exon:5819;Parent=Msa1181170-mRNA-1
chr8_1 exon 15501427 15502671 15501427 ID=Msa1181170-mRNA-1:exon:5820;Parent=Msa1181170-mRNA-1
chr8_1 CDS 15496493 15496946 15496493 ID=Msa1181170-mRNA-1:cds;Parent=Msa1181170-mRNA-1
chr8_1 CDS 15498188 15498281 15498188 ID=Msa1181170-mRNA-1:cds;Parent=Msa1181170-mRNA-1
chr8_1 CDS 15498730 15498745 15498730 ID=Msa1181170-mRNA-1:cds;Parent=Msa1181170-mRNA-1
chr8_1 three_prime_UTR 15498746 15499070 15498746 ID=Msa1181170-mRNA-1:three_prime_utr;Parent=Msa1181170-mRNA-1
chr8_1 three_prime_UTR 15499971 15500029 15499971 ID=Msa1181170-mRNA-1:three_prime_utr;Parent=Msa1181170-mRNA-1
chr8_1 three_prime_UTR 15501427 15502671 15501427 ID=Msa1181170-mRNA-1:three_prime_utr;Parent=Msa1181170-mRNA-1
Gene Sequence

>Msa1181170

ATGACTGGTTCTGTCGGAGGTATGCAGCAGGGCTTTCACCAGCAAAGTTTCGACATGCAGCAGCACCCCCCACAAGAACCTTTTCAGTTTACCGACAAGCAGCAATCAGTTGGTCCAGATAACTCATTTCCTGAGTATCCAACAATGCACCCTGCACAACCCACCAATGTTCCCCCACACCCAAACCCAATGCTGAACCCACCTGTGCCATTTGGTTATCCCCCTTTCCCGCAAGACCGAGCTCAACCATTTTATGTTGCTCCCTATGATATGCCTAGGCAGGACTCGTCTTCTGATATTGGTGGAGACCCAAATTCATTAATGGGTTACCCACAAGGTGTCCCAAATGGCCCAAATTTTCAAGGAAATTACCCCCAGCCCTGGAATGCAGCAGGCATTCCTTTTGAACAAGGACAAGGTGGTGGTATGGCTGTGGATCCAAGGGATTCTAAAGTAGTATCCGTTTCTGAATTGCAGAACGAAGAACCTCAAAGCTATTCAAATCTGAGATTGAAACAATCTAGATTCGTTAACTTTGTGTTGTTCAAGAAGGAGGGTGAATAA
Protein sequence

>Msa1181170

MTGSVGGMQQGFHQQSFDMQQHPPQEPFQFTDKQQSVGPDNSFPEYPTMHPAQPTNVPPHPNPMLNPPVPFGYPPFPQDRAQPFYVAPYDMPRQDSSSDIGGDPNSLMGYPQGVPNGPNFQGNYPQPWNAAGIPFEQGQGGGMAVDPRDSKVVSVSELQNEEPQSYSNLRLKQSRFVNFVLFKKEGE*