Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145570 | XP_013449595.1 | 100.000 | 212 | 0 | 0 | 1 | 212 | 1 | 212 | 4.09e-141 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145570 | sp|Q84M24|AB1A_ARATH | 68.396 | 212 | 67 | 0 | 1 | 212 | 1 | 212 | 3.30e-100 | 321 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145570 | A0A072U3A4 | 100.000 | 212 | 0 | 0 | 1 | 212 | 1 | 212 | 1.95e-141 | 444 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064020 | Msa1145570 | 0.831455 | 1.652915e-55 | -8.615850e-47 |
| Msa0827500 | Msa1145570 | 0.831931 | 1.261426e-55 | -8.615850e-47 |
| Msa1145520 | Msa1145570 | 0.853935 | 1.719109e-61 | -8.615850e-47 |
| Msa1145570 | Msa1268230 | 0.812500 | 4.108310e-51 | -8.615850e-47 |
| Msa1145570 | Msa1377960 | 0.801745 | 7.788152e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145570 | MtrunA17_Chr7g0257341 | 100.000 | 212 | 0 | 0 | 1 | 212 | 1 | 212 | 4.00e-145 | 444 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145570 | AT2G41700.1 | 68.396 | 212 | 67 | 0 | 1 | 212 | 1 | 212 | 3.35e-101 | 321 |
| Msa1145570 | AT2G41700.2 | 67.391 | 184 | 60 | 0 | 29 | 212 | 23 | 206 | 6.75e-85 | 274 |
Find 64 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAACTGCTCCTTTAATTT+TGG | 0.054594 | 7_4:+22441451 | None:intergenic |
| CCCTAACTTTCAACAAGTTT+TGG | 0.206415 | 7_4:-22442957 | Msa1145570:CDS |
| TGTTCGAATCCCAAAATTAA+AGG | 0.236912 | 7_4:-22441461 | Msa1145570:CDS |
| TCCAAAACTTGTTGAAAGTT+AGG | 0.277314 | 7_4:+22442956 | None:intergenic |
| TATCATCATCCTTGTTTCAT+TGG | 0.294235 | 7_4:+22442889 | None:intergenic |
| AACCGCTTCACGCCAGTTAA+AGG | 0.298737 | 7_4:-22444213 | Msa1145570:CDS |
| TCCGGATGTTACAACAATAA+TGG | 0.327584 | 7_4:-22441357 | Msa1145570:CDS |
| TTCTGAGCATAACCTTTAAC+TGG | 0.329072 | 7_4:+22444201 | None:intergenic |
| CTTCAAAATCGGAAATTTGA+TGG | 0.346030 | 7_4:+22442856 | None:intergenic |
| CTCAAGCTGTATTGCATTGT+TGG | 0.352595 | 7_4:+22441284 | None:intergenic |
| CCAAAACTTGTTGAAAGTTA+GGG | 0.354366 | 7_4:+22442957 | None:intergenic |
| ATCCTTGTTTCATTGGTGTC+TGG | 0.365613 | 7_4:+22442896 | None:intergenic |
| AATCATACATGGGCTTTCTC+TGG | 0.377798 | 7_4:-22441383 | Msa1145570:CDS |
| TCCATTATTGTTGTAACATC+CGG | 0.410275 | 7_4:+22441356 | None:intergenic |
| TTCACATTCTTCCATTTCCT+AGG | 0.419214 | 7_4:-22444253 | Msa1145570:five_prime_UTR |
| GTCAAAGGGTTTGCGTTTGG+TGG | 0.432044 | 7_4:+22444343 | None:intergenic |
| CATGTCAAAGGGTTTGCGTT+TGG | 0.436150 | 7_4:+22444340 | None:intergenic |
| TACATCCGGTCAGATGCTTA+TGG | 0.439540 | 7_4:-22441938 | Msa1145570:CDS |
| AGTTCTAAGTCATTAAGAAA+AGG | 0.439842 | 7_4:+22441323 | None:intergenic |
| TGAGTAGGTACCTTCAAAAT+CGG | 0.451735 | 7_4:+22442845 | None:intergenic |
| GTTCTAAGTCATTAAGAAAA+GGG | 0.461704 | 7_4:+22441324 | None:intergenic |
| AAGATATGTTTGTAGAAGTC+GGG | 0.469671 | 7_4:-22442991 | Msa1145570:CDS |
| GTGGAAGGAACCCTAGGAAA+TGG | 0.470285 | 7_4:+22444242 | None:intergenic |
| TCACATTCTTCCATTTCCTA+GGG | 0.475155 | 7_4:-22444252 | Msa1145570:five_prime_UTR |
| TGAACTCATGTCATGTCAAA+GGG | 0.480515 | 7_4:+22444329 | None:intergenic |
| TTTCTTAATGACTTAGAACT+TGG | 0.482106 | 7_4:-22441320 | Msa1145570:CDS |
| AAAGATATGTTTGTAGAAGT+CGG | 0.486561 | 7_4:-22442992 | Msa1145570:CDS |
| CCTAGGGTTCCTTCCACCAT+GGG | 0.488862 | 7_4:-22444236 | Msa1145570:exon |
| TTTGCGTTTGGTGGAGAGTG+AGG | 0.495218 | 7_4:+22444352 | None:intergenic |
| ACAACAATAATGGATACAAA+TGG | 0.499652 | 7_4:-22441347 | Msa1145570:CDS |
| ATGGTACCTGCAATGATGTA+AGG | 0.500321 | 7_4:-22441919 | Msa1145570:intron |
| TTGAACTCATGTCATGTCAA+AGG | 0.502438 | 7_4:+22444328 | None:intergenic |
| GAAGAATGTGAAGGAGAAAG+AGG | 0.504902 | 7_4:+22444264 | None:intergenic |
| TCCTAGGGTTCCTTCCACCA+TGG | 0.512801 | 7_4:-22444237 | Msa1145570:exon |
| CCCTTTCGTTACTGCTGCCG+AGG | 0.525163 | 7_4:-22444153 | Msa1145570:intron |
| TAGAAAACTGACGATTGAGC+TGG | 0.533371 | 7_4:+22443664 | None:intergenic |
| AATAGCATCAACACAATCGC+AGG | 0.535303 | 7_4:+22443724 | None:intergenic |
| TTGCGTTTGGTGGAGAGTGA+GGG | 0.537937 | 7_4:+22444353 | None:intergenic |
| TGGTGGAGAGTGAGGGAAGG+TGG | 0.541074 | 7_4:+22444360 | None:intergenic |
| CAAAACTTGTTGAAAGTTAG+GGG | 0.545522 | 7_4:+22442958 | None:intergenic |
| CTGGCGTGAAGCGGTTCCCA+TGG | 0.552773 | 7_4:+22444220 | None:intergenic |
| GCATACGTCTCAATCATACA+TGG | 0.554431 | 7_4:-22441394 | Msa1145570:CDS |
| ACCTCGGCAGCAGTAACGAA+AGG | 0.564643 | 7_4:+22444152 | None:intergenic |
| ATACAACGATGAGTTAGAGT+TGG | 0.569178 | 7_4:-22441966 | Msa1145570:CDS |
| AACCTTTAACTGGCGTGAAG+CGG | 0.573632 | 7_4:+22444211 | None:intergenic |
| TAGAGTTGGAAACATACATC+CGG | 0.574536 | 7_4:-22441952 | Msa1145570:CDS |
| CCTCGGCAGCAGTAACGAAA+GGG | 0.586861 | 7_4:+22444153 | None:intergenic |
| GAAGCGGTTCCCATGGTGGA+AGG | 0.590875 | 7_4:+22444227 | None:intergenic |
| AGCAGCTGTAAGAACACAAG+TGG | 0.594865 | 7_4:-22443701 | Msa1145570:CDS |
| ACAATGCAATACAGCTTGAG+TGG | 0.595002 | 7_4:-22441281 | Msa1145570:CDS |
| GCAGTTGTATTTCACGAACA+AGG | 0.596067 | 7_4:-22441437 | Msa1145570:CDS |
| CAATGCAATACAGCTTGAGT+GGG | 0.604687 | 7_4:-22441280 | Msa1145570:CDS |
| AGGTACCATAAGCATCTGAC+CGG | 0.611963 | 7_4:+22441933 | None:intergenic |
| ATGTTTGTAGAAGTCGGGAA+AGG | 0.612327 | 7_4:-22442986 | Msa1145570:CDS |
| GCGTGAAGCGGTTCCCATGG+TGG | 0.617046 | 7_4:+22444223 | None:intergenic |
| GTTTGGTGGAGAGTGAGGGA+AGG | 0.622429 | 7_4:+22444357 | None:intergenic |
| CCCATGGTGGAAGGAACCCT+AGG | 0.632954 | 7_4:+22444236 | None:intergenic |
| TAGGAAATGGAAGAATGTGA+AGG | 0.652391 | 7_4:+22444255 | None:intergenic |
| TACCAGACACCAATGAAACA+AGG | 0.665976 | 7_4:-22442898 | Msa1145570:CDS |
| CATACGTCTCAATCATACAT+GGG | 0.679943 | 7_4:-22441393 | Msa1145570:CDS |
| ATAGCATCAACACAATCGCA+GGG | 0.685659 | 7_4:+22443725 | None:intergenic |
| ATACTCTCTCTTATCCAACA+AGG | 0.685753 | 7_4:+22442931 | None:intergenic |
| ATGCTATAATCAAATGACTG+AGG | 0.693382 | 7_4:+22441413 | None:intergenic |
| AACAAGGATGATGATAGACG+TGG | 0.812241 | 7_4:-22442882 | Msa1145570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTCAATAATTTATATGTT+AGG | - | chr7_4:22441801-22441820 | Msa1145570:intron | 15.0% |
| !! | TGTCAATAATTTATATGTTA+GGG | - | chr7_4:22441802-22441821 | Msa1145570:intron | 15.0% |
| !!! | TTTATTCTTAATATTTTGTG+AGG | - | chr7_4:22442590-22442609 | Msa1145570:intron | 15.0% |
| !!! | ATTCAAGCAAATAATTTTTA+GGG | - | chr7_4:22443182-22443201 | Msa1145570:intron | 15.0% |
| !!! | TTATTGTATTTTTTTTAGAG+AGG | - | chr7_4:22443388-22443407 | Msa1145570:intron | 15.0% |
| !! | AAATTTGACAAAAATATCAA+TGG | - | chr7_4:22443416-22443435 | Msa1145570:intron | 15.0% |
| !! | GAAGAAAAACAAAAATTGAA+CGG | + | chr7_4:22441547-22441566 | None:intergenic | 20.0% |
| !!! | TACTGTTATTGTTTCTTTTA+TGG | - | chr7_4:22441744-22441763 | Msa1145570:intron | 20.0% |
| !! | TTGAAATGTTGTGAATAATT+TGG | - | chr7_4:22442870-22442889 | Msa1145570:CDS | 20.0% |
| !!! | GATTCAAGCAAATAATTTTT+AGG | - | chr7_4:22443181-22443200 | Msa1145570:intron | 20.0% |
| !! | GAACCTATCTAATTAAAATT+TGG | - | chr7_4:22443626-22443645 | Msa1145570:intron | 20.0% |
| !!! | GAACCAAATTTTAATTAGAT+AGG | + | chr7_4:22443632-22443651 | None:intergenic | 20.0% |
| !! | TTTAGATGATAACTCTAATT+AGG | - | chr7_4:22443994-22444013 | Msa1145570:intron | 20.0% |
| ! | ACCTATAATAGAAAAGATGT+TGG | - | chr7_4:22442238-22442257 | Msa1145570:intron | 25.0% |
| !! | TCCAACATCTTTTCTATTAT+AGG | + | chr7_4:22442242-22442261 | None:intergenic | 25.0% |
| ! | TAGAAAAGATGTTGGAAAAT+AGG | - | chr7_4:22442246-22442265 | Msa1145570:intron | 25.0% |
| ! | AGATTTAGAGATTAATGAGT+TGG | - | chr7_4:22442388-22442407 | Msa1145570:intron | 25.0% |
| !! | TAATGAGTTGGATCAAAATA+TGG | - | chr7_4:22442400-22442419 | Msa1145570:intron | 25.0% |
| ! | AAAGATATGTTTGTAGAAGT+CGG | - | chr7_4:22442650-22442669 | Msa1145570:intron | 25.0% |
| !!! | GTTCATTTTATTTCAGTATG+CGG | - | chr7_4:22442826-22442845 | Msa1145570:intron | 25.0% |
| ! | AATACAGTTCATAAATTTGG+AGG | + | chr7_4:22442904-22442923 | None:intergenic | 25.0% |
| ! | TCTTACAAACAACTAGAAAT+GGG | + | chr7_4:22443065-22443084 | None:intergenic | 25.0% |
| !!! | TTACGAATTTTGTTTTTACG+TGG | - | chr7_4:22443143-22443162 | Msa1145570:intron | 25.0% |
| !! | ATTTTCAGATTGTGACTATT+TGG | - | chr7_4:22443217-22443236 | Msa1145570:intron | 25.0% |
| !!! | TGAATTTTGTTTATATGCAG+TGG | + | chr7_4:22443452-22443471 | None:intergenic | 25.0% |
| ! | GCTTAATGTACAAATTTCAA+AGG | + | chr7_4:22443561-22443580 | None:intergenic | 25.0% |
| ! | AATATGTTATTGACATGTTC+CGG | - | chr7_4:22443797-22443816 | Msa1145570:intron | 25.0% |
| ! | TTGTGTGATATGTAGAAATA+TGG | - | chr7_4:22444105-22444124 | Msa1145570:intron | 25.0% |
| ! | TGTGTGATATGTAGAAATAT+GGG | - | chr7_4:22444106-22444125 | Msa1145570:intron | 25.0% |
| !!! | ACAACAATAATGGATACAAA+TGG | - | chr7_4:22444295-22444314 | Msa1145570:five_prime_UTR | 25.0% |
| !! | GTTCTAAGTCATTAAGAAAA+GGG | + | chr7_4:22444321-22444340 | None:intergenic | 25.0% |
| !!! | AGTTCTAAGTCATTAAGAAA+AGG | + | chr7_4:22444322-22444341 | None:intergenic | 25.0% |
| ! | TTTCTTAATGACTTAGAACT+TGG | - | chr7_4:22444322-22444341 | Msa1145570:five_prime_UTR | 25.0% |
| GATGGTTGTTAATTAATCTG+TGG | - | chr7_4:22441883-22441902 | Msa1145570:intron | 30.0% | |
| ! | TTGTGTATGCTTTCCTATTT+TGG | - | chr7_4:22442028-22442047 | Msa1145570:intron | 30.0% |
| CATTGAAAACAGACCAAAAT+AGG | + | chr7_4:22442044-22442063 | None:intergenic | 30.0% | |
| ! | TTGGTCTGTTTTCAATGTTA+TGG | - | chr7_4:22442047-22442066 | Msa1145570:intron | 30.0% |
| ! | GTTTTCAATGTTATGGTGTA+TGG | - | chr7_4:22442054-22442073 | Msa1145570:intron | 30.0% |
| TAACAAAGAGAGTAAAATGC+AGG | - | chr7_4:22442082-22442101 | Msa1145570:intron | 30.0% | |
| AACAAAGAGAGTAAAATGCA+GGG | - | chr7_4:22442083-22442102 | Msa1145570:intron | 30.0% | |
| AGATGTTGGAAAATAGGTTT+AGG | - | chr7_4:22442252-22442271 | Msa1145570:intron | 30.0% | |
| AAAATAGGTTTAGGTGGTTT+GGG | - | chr7_4:22442261-22442280 | Msa1145570:intron | 30.0% | |
| ATTGAGAGAGTGAATGTAAA+TGG | - | chr7_4:22442516-22442535 | Msa1145570:intron | 30.0% | |
| AGAGTGAATGTAAATGGAAT+TGG | - | chr7_4:22442522-22442541 | Msa1145570:intron | 30.0% | |
| GAGTGAATGTAAATGGAATT+GGG | - | chr7_4:22442523-22442542 | Msa1145570:intron | 30.0% | |
| GATTAATGTGAATGTGGAAA+TGG | - | chr7_4:22442612-22442631 | Msa1145570:intron | 30.0% | |
| AAGATATGTTTGTAGAAGTC+GGG | - | chr7_4:22442651-22442670 | Msa1145570:intron | 30.0% | |
| !! | CAAAACTTGTTGAAAGTTAG+GGG | + | chr7_4:22442687-22442706 | None:intergenic | 30.0% |
| !! | CCAAAACTTGTTGAAAGTTA+GGG | + | chr7_4:22442688-22442707 | None:intergenic | 30.0% |
| !! | TCCAAAACTTGTTGAAAGTT+AGG | + | chr7_4:22442689-22442708 | None:intergenic | 30.0% |
| ! | TATCATCATCCTTGTTTCAT+TGG | + | chr7_4:22442756-22442775 | None:intergenic | 30.0% |
| CTTCAAAATCGGAAATTTGA+TGG | + | chr7_4:22442789-22442808 | None:intergenic | 30.0% | |
| ! | CATCAAATTTCCGATTTTGA+AGG | - | chr7_4:22442787-22442806 | Msa1145570:intron | 30.0% |
| GGGAATACAGTTCATAAATT+TGG | + | chr7_4:22442907-22442926 | None:intergenic | 30.0% | |
| AATTTATGAACTGTATTCCC+CGG | - | chr7_4:22442907-22442926 | Msa1145570:CDS | 30.0% | |
| ! | TTGAATGCAGATTTTTCTGT+GGG | - | chr7_4:22442939-22442958 | Msa1145570:CDS | 30.0% |
| GTATGTTTAAACCTCTTCTT+TGG | - | chr7_4:22442966-22442985 | Msa1145570:CDS | 30.0% | |
| TTACAAACAACTAGAAATGG+GGG | + | chr7_4:22443063-22443082 | None:intergenic | 30.0% | |
| CTTACAAACAACTAGAAATG+GGG | + | chr7_4:22443064-22443083 | None:intergenic | 30.0% | |
| CTCTTACAAACAACTAGAAA+TGG | + | chr7_4:22443066-22443085 | None:intergenic | 30.0% | |
| ! | TCGTAACGAATTTTCTATTC+CGG | + | chr7_4:22443129-22443148 | None:intergenic | 30.0% |
| GTACAAATTTCAAAGGATGA+AGG | + | chr7_4:22443554-22443573 | None:intergenic | 30.0% | |
| CAACTCATTTAGAAGATGAA+TGG | + | chr7_4:22443601-22443620 | None:intergenic | 30.0% | |
| AATACTAACATGCTGCATAT+AGG | + | chr7_4:22443654-22443673 | None:intergenic | 30.0% | |
| ! | ATTTTACCTTACATCATTGC+AGG | + | chr7_4:22443732-22443751 | None:intergenic | 30.0% |
| !! | ACTTTAATTTGCCTCATTCA+TGG | + | chr7_4:22443826-22443845 | None:intergenic | 30.0% |
| ACTAGAATAATTTAGTGTCC+TGG | - | chr7_4:22443855-22443874 | Msa1145570:intron | 30.0% | |
| CTAGAATAATTTAGTGTCCT+GGG | - | chr7_4:22443856-22443875 | Msa1145570:intron | 30.0% | |
| CTATAAAATCTCAATATCCC+AGG | + | chr7_4:22443876-22443895 | None:intergenic | 30.0% | |
| ! | CTGGGATATTGAGATTTTAT+AGG | - | chr7_4:22443874-22443893 | Msa1145570:intron | 30.0% |
| CAGCTATATAGATCAAATGT+TGG | + | chr7_4:22443908-22443927 | None:intergenic | 30.0% | |
| TGTTCGAATCCCAAAATTAA+AGG | - | chr7_4:22444181-22444200 | Msa1145570:CDS | 30.0% | |
| !! | ACAACTGCTCCTTTAATTTT+GGG | + | chr7_4:22444193-22444212 | None:intergenic | 30.0% |
| !! | TACAACTGCTCCTTTAATTT+TGG | + | chr7_4:22444194-22444213 | None:intergenic | 30.0% |
| ATGCTATAATCAAATGACTG+AGG | + | chr7_4:22444232-22444251 | None:intergenic | 30.0% | |
| TCCATTATTGTTGTAACATC+CGG | + | chr7_4:22444289-22444308 | None:intergenic | 30.0% | |
| TGAACTCATGTCATGTCAAA+GGG | + | chr7_4:22441316-22441335 | None:intergenic | 35.0% | |
| TTGAACTCATGTCATGTCAA+AGG | + | chr7_4:22441317-22441336 | None:intergenic | 35.0% | |
| TAGGAAATGGAAGAATGTGA+AGG | + | chr7_4:22441390-22441409 | None:intergenic | 35.0% | |
| TTCACATTCTTCCATTTCCT+AGG | - | chr7_4:22441389-22441408 | Msa1145570:CDS | 35.0% | |
| TCACATTCTTCCATTTCCTA+GGG | - | chr7_4:22441390-22441409 | Msa1145570:CDS | 35.0% | |
| TTCTGAGCATAACCTTTAAC+TGG | + | chr7_4:22441444-22441463 | None:intergenic | 35.0% | |
| CGGTCAACTATATAGAGAAT+CGG | + | chr7_4:22441571-22441590 | None:intergenic | 35.0% | |
| AATGAACAACGACGTTGAAT+CGG | + | chr7_4:22441591-22441610 | None:intergenic | 35.0% | |
| ACAAAGAGAGTAAAATGCAG+GGG | - | chr7_4:22442084-22442103 | Msa1145570:intron | 35.0% | |
| AGATGAAAATGTTGAGTTCG+AGG | - | chr7_4:22442153-22442172 | Msa1145570:intron | 35.0% | |
| TGTCAACATTTGAGAAAGAG+TGG | - | chr7_4:22442208-22442227 | Msa1145570:intron | 35.0% | |
| TGTTGGAAAATAGGTTTAGG+TGG | - | chr7_4:22442255-22442274 | Msa1145570:intron | 35.0% | |
| GAAAATAGGTTTAGGTGGTT+TGG | - | chr7_4:22442260-22442279 | Msa1145570:intron | 35.0% | |
| AAATAGGTTTAGGTGGTTTG+GGG | - | chr7_4:22442262-22442281 | Msa1145570:intron | 35.0% | |
| TTCCTTGTTACAGAATCTAC+AGG | + | chr7_4:22442302-22442321 | None:intergenic | 35.0% | |
| AAGAATAGTCAGATCACTAG+AGG | - | chr7_4:22442335-22442354 | Msa1145570:intron | 35.0% | |
| TAAATGGAATTGGGTTACGA+GGG | - | chr7_4:22442532-22442551 | Msa1145570:intron | 35.0% | |
| TGTGAGGATTAATGTGAATG+TGG | - | chr7_4:22442606-22442625 | Msa1145570:intron | 35.0% | |
| ! | CCCTAACTTTCAACAAGTTT+TGG | - | chr7_4:22442685-22442704 | Msa1145570:intron | 35.0% |
| !!! | ACAAGTTTTGGAATCCTTGT+TGG | - | chr7_4:22442697-22442716 | Msa1145570:intron | 35.0% |
| ATACTCTCTCTTATCCAACA+AGG | + | chr7_4:22442714-22442733 | None:intergenic | 35.0% | |
| TGAGTAGGTACCTTCAAAAT+CGG | + | chr7_4:22442800-22442819 | None:intergenic | 35.0% | |
| AAAATGAACCACAGATGAGT+AGG | + | chr7_4:22442815-22442834 | None:intergenic | 35.0% | |
| ATTTATGAACTGTATTCCCC+GGG | - | chr7_4:22442908-22442927 | Msa1145570:CDS | 35.0% | |
| ! | CTTGAATGCAGATTTTTCTG+TGG | - | chr7_4:22442938-22442957 | Msa1145570:CDS | 35.0% |
| GAAAAGAGAAACCAAAGAAG+AGG | + | chr7_4:22442980-22442999 | None:intergenic | 35.0% | |
| !! | TTTCCTGTCACTTGATTTTC+CGG | - | chr7_4:22443107-22443126 | Msa1145570:intron | 35.0% |
| TTCAAAGGATGAAGGTTCTA+AGG | + | chr7_4:22443546-22443565 | None:intergenic | 35.0% | |
| ATACAACGATGAGTTAGAGT+TGG | - | chr7_4:22443676-22443695 | Msa1145570:CDS | 35.0% | |
| TAGAGTTGGAAACATACATC+CGG | - | chr7_4:22443690-22443709 | Msa1145570:CDS | 35.0% | |
| ! | CAAAGCTTTCAAGTCAGAAA+AGG | + | chr7_4:22443755-22443774 | None:intergenic | 35.0% |
| TTTGTTGCTCTATCAACTAC+TGG | - | chr7_4:22443771-22443790 | Msa1145570:intron | 35.0% | |
| ! | CAACCAAAGTATTTCTCACT+AGG | + | chr7_4:22443937-22443956 | None:intergenic | 35.0% |
| CATACGTCTCAATCATACAT+GGG | - | chr7_4:22444249-22444268 | Msa1145570:five_prime_UTR | 35.0% | |
| TCCGGATGTTACAACAATAA+TGG | - | chr7_4:22444285-22444304 | Msa1145570:five_prime_UTR | 35.0% | |
| GAAGAATGTGAAGGAGAAAG+AGG | + | chr7_4:22441381-22441400 | None:intergenic | 40.0% | |
| !! | AAGGGTGACGAATTTTGAGA+AGG | + | chr7_4:22441474-22441493 | None:intergenic | 40.0% |
| GAGTGAAGGAAGAATAACCT+CGG | + | chr7_4:22441509-22441528 | None:intergenic | 40.0% | |
| AAAGAGAGAGAGAAGAGTGA+AGG | + | chr7_4:22441523-22441542 | None:intergenic | 40.0% | |
| ! | TGTCAATGCTGAAGTTCTGA+TGG | - | chr7_4:22441865-22441884 | Msa1145570:intron | 40.0% |
| ATAGCATCAACACAATCGCA+GGG | + | chr7_4:22441920-22441939 | None:intergenic | 40.0% | |
| AATAGCATCAACACAATCGC+AGG | + | chr7_4:22441921-22441940 | None:intergenic | 40.0% | |
| TAGAAAACTGACGATTGAGC+TGG | + | chr7_4:22441981-22442000 | None:intergenic | 40.0% | |
| AAAATGTTGAGTTCGAGGTG+TGG | - | chr7_4:22442158-22442177 | Msa1145570:intron | 40.0% | |
| CAACATTTGAGAAAGAGTGG+AGG | - | chr7_4:22442211-22442230 | Msa1145570:intron | 40.0% | |
| GACCTGTAGATTCTGTAACA+AGG | - | chr7_4:22442297-22442316 | Msa1145570:intron | 40.0% | |
| !! | AAGCCTTATTCCACTAAGTG+GGG | + | chr7_4:22442469-22442488 | None:intergenic | 40.0% |
| !! | CAAGCCTTATTCCACTAAGT+GGG | + | chr7_4:22442470-22442489 | None:intergenic | 40.0% |
| GTAAATGGAATTGGGTTACG+AGG | - | chr7_4:22442531-22442550 | Msa1145570:intron | 40.0% | |
| ATGTTTGTAGAAGTCGGGAA+AGG | - | chr7_4:22442656-22442675 | Msa1145570:intron | 40.0% | |
| TACCAGACACCAATGAAACA+AGG | - | chr7_4:22442744-22442763 | Msa1145570:intron | 40.0% | |
| ! | ATCCTTGTTTCATTGGTGTC+TGG | + | chr7_4:22442749-22442768 | None:intergenic | 40.0% |
| AACAAGGATGATGATAGACG+TGG | - | chr7_4:22442760-22442779 | Msa1145570:intron | 40.0% | |
| ! | CTTTTCCTTGTACACGTCTT+TGG | - | chr7_4:22442994-22443013 | Msa1145570:CDS | 40.0% |
| AAAAGCCAAAGACGTGTACA+AGG | + | chr7_4:22443002-22443021 | None:intergenic | 40.0% | |
| AAATGGGGGAAATGGAACAA+AGG | + | chr7_4:22443049-22443068 | None:intergenic | 40.0% | |
| ACAACTAGAAATGGGGGAAA+TGG | + | chr7_4:22443057-22443076 | None:intergenic | 40.0% | |
| ATTCCGGAAAATCAAGTGAC+AGG | + | chr7_4:22443113-22443132 | None:intergenic | 40.0% | |
| TTCGTTTCGAACAAGTCTTG+AGG | - | chr7_4:22443278-22443297 | Msa1145570:intron | 40.0% | |
| TCTTGAGGCGGAAAAAAACT+TGG | - | chr7_4:22443293-22443312 | Msa1145570:intron | 40.0% | |
| !! | TACATGAAAGCACTCCCATA+TGG | + | chr7_4:22443495-22443514 | None:intergenic | 40.0% |
| ATGGTACCTGCAATGATGTA+AGG | - | chr7_4:22443723-22443742 | Msa1145570:CDS | 40.0% | |
| CTGCCTAGTGAGAAATACTT+TGG | - | chr7_4:22443931-22443950 | Msa1145570:intron | 40.0% | |
| TTATTTCCTCATACCCGTGT+AGG | - | chr7_4:22444155-22444174 | Msa1145570:CDS | 40.0% | |
| GATTCGAACAATTCCTACAC+GGG | + | chr7_4:22444171-22444190 | None:intergenic | 40.0% | |
| GGATTCGAACAATTCCTACA+CGG | + | chr7_4:22444172-22444191 | None:intergenic | 40.0% | |
| GCAGTTGTATTTCACGAACA+AGG | - | chr7_4:22444205-22444224 | Msa1145570:CDS | 40.0% | |
| GCATACGTCTCAATCATACA+TGG | - | chr7_4:22444248-22444267 | Msa1145570:five_prime_UTR | 40.0% | |
| AATCATACATGGGCTTTCTC+TGG | - | chr7_4:22444259-22444278 | Msa1145570:five_prime_UTR | 40.0% | |
| CTCAAGCTGTATTGCATTGT+TGG | + | chr7_4:22444361-22444380 | None:intergenic | 40.0% | |
| ACAATGCAATACAGCTTGAG+TGG | - | chr7_4:22444361-22444380 | Msa1145570:five_prime_UTR | 40.0% | |
| CAATGCAATACAGCTTGAGT+GGG | - | chr7_4:22444362-22444381 | Msa1145570:five_prime_UTR | 40.0% | |
| CATGTCAAAGGGTTTGCGTT+TGG | + | chr7_4:22441305-22441324 | None:intergenic | 45.0% | |
| AACCTTTAACTGGCGTGAAG+CGG | + | chr7_4:22441434-22441453 | None:intergenic | 45.0% | |
| AGCAGCTGTAAGAACACAAG+TGG | - | chr7_4:22441941-22441960 | Msa1145570:CDS | 45.0% | |
| ACTAAGTGGGGTCAACTACA+TGG | + | chr7_4:22442457-22442476 | None:intergenic | 45.0% | |
| ATGTAGTTGACCCCACTTAG+TGG | - | chr7_4:22442456-22442475 | Msa1145570:intron | 45.0% | |
| TGACCCCACTTAGTGGAATA+AGG | - | chr7_4:22442463-22442482 | Msa1145570:intron | 45.0% | |
| !! | CCAAGCCTTATTCCACTAAG+TGG | + | chr7_4:22442471-22442490 | None:intergenic | 45.0% |
| CCACTTAGTGGAATAAGGCT+TGG | - | chr7_4:22442468-22442487 | Msa1145570:intron | 45.0% | |
| GAATTGGGTTACGAGGGTAA+TGG | - | chr7_4:22442538-22442557 | Msa1145570:intron | 45.0% | |
| TGTGAATGTGGAAATGGAGC+AGG | - | chr7_4:22442618-22442637 | Msa1145570:intron | 45.0% | |
| !! | TGAAGGTACCTACTCATCTG+TGG | - | chr7_4:22442804-22442823 | Msa1145570:intron | 45.0% |
| GTTTCGAACAAGTCTTGAGG+CGG | - | chr7_4:22443281-22443300 | Msa1145570:intron | 45.0% | |
| !! | ATGAAAGCACTCCCATATGG+AGG | + | chr7_4:22443492-22443511 | None:intergenic | 45.0% |
| TACATCCGGTCAGATGCTTA+TGG | - | chr7_4:22443704-22443723 | Msa1145570:CDS | 45.0% | |
| AGGTACCATAAGCATCTGAC+CGG | + | chr7_4:22443712-22443731 | None:intergenic | 45.0% | |
| TTTGCCTCATTCATGGTCAC+CGG | + | chr7_4:22443819-22443838 | None:intergenic | 45.0% | |
| ACAATTCCTACACGGGTATG+AGG | + | chr7_4:22444164-22444183 | None:intergenic | 45.0% | |
| !!! | ATGGGCTTTCTCTGGTTTTC+CGG | - | chr7_4:22444267-22444286 | Msa1145570:five_prime_UTR | 45.0% |
| ! | TTGCGTTTGGTGGAGAGTGA+GGG | + | chr7_4:22441292-22441311 | None:intergenic | 50.0% |
| ! | TTTGCGTTTGGTGGAGAGTG+AGG | + | chr7_4:22441293-22441312 | None:intergenic | 50.0% |
| GTCAAAGGGTTTGCGTTTGG+TGG | + | chr7_4:22441302-22441321 | None:intergenic | 50.0% | |
| GTGGAAGGAACCCTAGGAAA+TGG | + | chr7_4:22441403-22441422 | None:intergenic | 50.0% | |
| AACCGCTTCACGCCAGTTAA+AGG | - | chr7_4:22441429-22441448 | Msa1145570:CDS | 50.0% | |
| TCGAGGTGTGGTAAGACTAG+AGG | - | chr7_4:22442170-22442189 | Msa1145570:intron | 50.0% | |
| CGAGGTGTGGTAAGACTAGA+GGG | - | chr7_4:22442171-22442190 | Msa1145570:intron | 50.0% | |
| GAGGTGTGGTAAGACTAGAG+GGG | - | chr7_4:22442172-22442191 | Msa1145570:intron | 50.0% | |
| AGTCAGATCACTAGAGGCAG+AGG | - | chr7_4:22442341-22442360 | Msa1145570:intron | 50.0% | |
| TGCATTCAAGTCCTAAGCCC+GGG | + | chr7_4:22442928-22442947 | None:intergenic | 50.0% | |
| CTGCATTCAAGTCCTAAGCC+CGG | + | chr7_4:22442929-22442948 | None:intergenic | 50.0% | |
| GGGGAAATGGAACAAAGGCA+TGG | + | chr7_4:22443044-22443063 | None:intergenic | 50.0% | |
| TCTGCTCCTCTTCCTCCATA+TGG | - | chr7_4:22443477-22443496 | Msa1145570:intron | 50.0% | |
| CTGCTCCTCTTCCTCCATAT+GGG | - | chr7_4:22443478-22443497 | Msa1145570:intron | 50.0% | |
| TGTTCCGGTGACCATGAATG+AGG | - | chr7_4:22443812-22443831 | Msa1145570:intron | 50.0% | |
| ! | GTTTGGTGGAGAGTGAGGGA+AGG | + | chr7_4:22441288-22441307 | None:intergenic | 55.0% |
| TCCTAGGGTTCCTTCCACCA+TGG | - | chr7_4:22441405-22441424 | Msa1145570:CDS | 55.0% | |
| CCTAGGGTTCCTTCCACCAT+GGG | - | chr7_4:22441406-22441425 | Msa1145570:CDS | 55.0% | |
| CCTCGGCAGCAGTAACGAAA+GGG | + | chr7_4:22441492-22441511 | None:intergenic | 55.0% | |
| ACCTCGGCAGCAGTAACGAA+AGG | + | chr7_4:22441493-22441512 | None:intergenic | 55.0% | |
| GAACTGTATTCCCCGGGCTT+AGG | - | chr7_4:22442914-22442933 | Msa1145570:CDS | 55.0% | |
| GCATTCAAGTCCTAAGCCCG+GGG | + | chr7_4:22442927-22442946 | None:intergenic | 55.0% | |
| GCACTCCCATATGGAGGAAG+AGG | + | chr7_4:22443486-22443505 | None:intergenic | 55.0% | |
| TGGTGGAGAGTGAGGGAAGG+TGG | + | chr7_4:22441285-22441304 | None:intergenic | 60.0% | |
| ! | CCCATGGTGGAAGGAACCCT+AGG | + | chr7_4:22441409-22441428 | None:intergenic | 60.0% |
| ! | GAAGCGGTTCCCATGGTGGA+AGG | + | chr7_4:22441418-22441437 | None:intergenic | 60.0% |
| CCCTTTCGTTACTGCTGCCG+AGG | - | chr7_4:22441489-22441508 | Msa1145570:intron | 60.0% | |
| GCGTGAAGCGGTTCCCATGG+TGG | + | chr7_4:22441422-22441441 | None:intergenic | 65.0% | |
| CTGGCGTGAAGCGGTTCCCA+TGG | + | chr7_4:22441425-22441444 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 22441271 | 22444393 | 22441271 | ID=Msa1145570;Name=Msa1145570 |
| chr7_4 | mRNA | 22441271 | 22444393 | 22441271 | ID=Msa1145570-mRNA-1;Parent=Msa1145570;Name=Msa1145570-mRNA-1;_AED=0.19;_eAED=0.19;_QI=153|0.5|0.4|0.6|1|1|5|0|212 |
| chr7_4 | exon | 22441271 | 22441487 | 22441271 | ID=Msa1145570-mRNA-1:exon:5566;Parent=Msa1145570-mRNA-1 |
| chr7_4 | exon | 22441920 | 22442002 | 22441920 | ID=Msa1145570-mRNA-1:exon:5565;Parent=Msa1145570-mRNA-1 |
| chr7_4 | exon | 22442856 | 22443024 | 22442856 | ID=Msa1145570-mRNA-1:exon:5564;Parent=Msa1145570-mRNA-1 |
| chr7_4 | exon | 22443676 | 22443755 | 22443676 | ID=Msa1145570-mRNA-1:exon:5563;Parent=Msa1145570-mRNA-1 |
| chr7_4 | exon | 22444154 | 22444393 | 22444154 | ID=Msa1145570-mRNA-1:exon:5562;Parent=Msa1145570-mRNA-1 |
| chr7_4 | five_prime_UTR | 22444241 | 22444393 | 22444241 | ID=Msa1145570-mRNA-1:five_prime_utr;Parent=Msa1145570-mRNA-1 |
| chr7_4 | CDS | 22444154 | 22444240 | 22444154 | ID=Msa1145570-mRNA-1:cds;Parent=Msa1145570-mRNA-1 |
| chr7_4 | CDS | 22443676 | 22443755 | 22443676 | ID=Msa1145570-mRNA-1:cds;Parent=Msa1145570-mRNA-1 |
| chr7_4 | CDS | 22442856 | 22443024 | 22442856 | ID=Msa1145570-mRNA-1:cds;Parent=Msa1145570-mRNA-1 |
| chr7_4 | CDS | 22441920 | 22442002 | 22441920 | ID=Msa1145570-mRNA-1:cds;Parent=Msa1145570-mRNA-1 |
| chr7_4 | CDS | 22441271 | 22441487 | 22441271 | ID=Msa1145570-mRNA-1:cds;Parent=Msa1145570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
