Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827500 | XP_003607196.1 | 99.814 | 537 | 1 | 0 | 1 | 537 | 1 | 537 | 0.0 | 1072 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827500 | sp|Q6WWW4|UPL3_ARATH | 77.371 | 464 | 71 | 6 | 95 | 537 | 96 | 546 | 0.0 | 636 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827500 | G7JNF2 | 99.814 | 537 | 1 | 0 | 1 | 537 | 1 | 537 | 0.0 | 1072 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035320 | Msa0827500 | 0.801785 | 7.641649e-49 | -8.615850e-47 |
| Msa0045560 | Msa0827500 | 0.822521 | 2.265776e-53 | -8.615850e-47 |
| Msa0095830 | Msa0827500 | 0.865674 | 4.976587e-65 | -8.615850e-47 |
| Msa0685620 | Msa0827500 | 0.833892 | 4.108332e-56 | -8.615850e-47 |
| Msa0698940 | Msa0827500 | 0.838334 | 3.059620e-57 | -8.615850e-47 |
| Msa0827500 | Msa0834290 | 0.800134 | 1.661685e-48 | -8.615850e-47 |
| Msa0827500 | Msa1145520 | 0.872256 | 3.656837e-67 | -8.615850e-47 |
| Msa0827500 | Msa1145570 | 0.831931 | 1.261426e-55 | -8.615850e-47 |
| Msa0827500 | Msa1154680 | 0.836329 | 9.977308e-57 | -8.615850e-47 |
| Msa0827500 | Msa1203820 | 0.813836 | 2.092199e-51 | -8.615850e-47 |
| Msa0827500 | Msa1204330 | 0.825271 | 5.135213e-54 | -8.615850e-47 |
| Msa0827500 | Msa1256070 | 0.886848 | 2.393334e-72 | -8.615850e-47 |
| Msa0827500 | Msa1317920 | 0.832442 | 9.432171e-56 | -8.615850e-47 |
| Msa0827500 | Msa1353240 | 0.810228 | 1.279696e-50 | -8.615850e-47 |
| Msa0827500 | Msa1376260 | 0.804222 | 2.395446e-49 | -8.615850e-47 |
| Msa0827500 | Msa1377960 | 0.811539 | 6.657180e-51 | -8.615850e-47 |
| Msa0827500 | Msa1381100 | 0.819143 | 1.355585e-52 | -8.615850e-47 |
| Msa0827500 | Msa1404220 | 0.861319 | 1.115590e-63 | -8.615850e-47 |
| Msa0142050 | Msa0827500 | 0.854511 | 1.172214e-61 | -8.615850e-47 |
| Msa0179250 | Msa0827500 | 0.801248 | 9.847213e-49 | -8.615850e-47 |
| Msa0379800 | Msa0827500 | 0.811705 | 6.125526e-51 | -8.615850e-47 |
| Msa0429010 | Msa0827500 | 0.806843 | 6.754492e-50 | -8.615850e-47 |
| Msa0433180 | Msa0827500 | 0.853777 | 1.909327e-61 | -8.615850e-47 |
| Msa0467310 | Msa0827500 | 0.807905 | 4.021776e-50 | -8.615850e-47 |
| Msa0472780 | Msa0827500 | 0.815451 | 9.185470e-52 | -8.615850e-47 |
| Msa0269800 | Msa0827500 | 0.866639 | 2.461969e-65 | -8.615850e-47 |
| Msa0524350 | Msa0827500 | 0.812780 | 3.567904e-51 | -8.615850e-47 |
| Msa0538740 | Msa0827500 | 0.844659 | 6.594111e-59 | -8.615850e-47 |
| Msa0570580 | Msa0827500 | 0.885541 | 7.442739e-72 | -8.615850e-47 |
| Msa0572050 | Msa0827500 | 0.805728 | 1.160635e-49 | -8.615850e-47 |
| Msa0573100 | Msa0827500 | 0.801779 | 7.664429e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827500 | MtrunA17_Chr4g0037101 | 99.814 | 537 | 1 | 0 | 1 | 537 | 1 | 537 | 0.0 | 1072 |
| Msa0827500 | MtrunA17_Chr1g0181721 | 49.367 | 316 | 154 | 2 | 175 | 490 | 97 | 406 | 2.37e-86 | 291 |
| Msa0827500 | MtrunA17_Chr7g0263611 | 38.866 | 247 | 132 | 5 | 192 | 421 | 31 | 275 | 2.88e-44 | 158 |
| Msa0827500 | MtrunA17_Chr2g0294881 | 26.855 | 283 | 193 | 7 | 134 | 407 | 21 | 298 | 5.95e-14 | 74.3 |
| Msa0827500 | MtrunA17_Chr7g0271871 | 28.638 | 213 | 144 | 4 | 199 | 407 | 91 | 299 | 2.17e-13 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827500 | AT4G38600.3 | 77.371 | 464 | 71 | 6 | 95 | 537 | 96 | 546 | 0.0 | 636 |
| Msa0827500 | AT4G38600.1 | 77.371 | 464 | 71 | 6 | 95 | 537 | 96 | 546 | 0.0 | 636 |
| Msa0827500 | AT4G38600.2 | 77.371 | 464 | 71 | 6 | 95 | 537 | 23 | 473 | 0.0 | 636 |
| Msa0827500 | AT5G02880.2 | 46.519 | 316 | 165 | 1 | 176 | 491 | 104 | 415 | 1.41e-82 | 281 |
| Msa0827500 | AT5G02880.1 | 46.519 | 316 | 165 | 1 | 176 | 491 | 104 | 415 | 1.65e-82 | 281 |
| Msa0827500 | AT4G16143.2 | 29.577 | 213 | 142 | 4 | 199 | 407 | 94 | 302 | 2.09e-15 | 79.3 |
| Msa0827500 | AT4G16143.1 | 29.577 | 213 | 142 | 4 | 199 | 407 | 94 | 302 | 2.09e-15 | 79.3 |
| Msa0827500 | AT3G06720.1 | 27.308 | 260 | 178 | 6 | 154 | 407 | 43 | 297 | 2.82e-14 | 75.9 |
| Msa0827500 | AT3G06720.2 | 27.308 | 260 | 178 | 6 | 154 | 407 | 43 | 297 | 2.82e-14 | 75.9 |
| Msa0827500 | AT4G02150.2 | 26.778 | 239 | 166 | 5 | 173 | 407 | 67 | 300 | 2.15e-13 | 72.8 |
| Msa0827500 | AT4G02150.1 | 26.778 | 239 | 166 | 5 | 173 | 407 | 67 | 300 | 1.23e-12 | 70.9 |
Find 173 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGGCTGTGCTGTCTTATT+TGG | 0.111461 | 5_3:-68797854 | Msa0827500:CDS |
| TCTTCCCCTTTCCCCAATTT+AGG | 0.150223 | 5_3:-68799476 | None:intergenic |
| TGTTGAAGAAAACCCTAAAT+TGG | 0.194695 | 5_3:+68799463 | None:intergenic |
| AACAGGCCCCTTCACAAAAT+TGG | 0.222178 | 5_3:+68796729 | None:intergenic |
| CTTCCCCTTTCCCCAATTTA+GGG | 0.226667 | 5_3:-68799475 | None:intergenic |
| TCACACGATTCTTTCATTCT+AGG | 0.230823 | 5_3:-68799360 | Msa0827500:five_prime_UTR |
| TTATCCGAATTATCCCTTTC+AGG | 0.248350 | 5_3:+68798908 | None:intergenic |
| GAGTGAAATTGAGAGGAAAT+AGG | 0.269551 | 5_3:+68799438 | None:intergenic |
| GGCAGGCAGTTGGGTGCTCC+TGG | 0.288415 | 5_3:+68797893 | None:intergenic |
| GTTGCTTACCATAGAGTATA+TGG | 0.288510 | 5_3:-68798354 | Msa0827500:CDS |
| CTTTGTGAAATACTATCTAT+TGG | 0.293686 | 5_3:-68798566 | Msa0827500:CDS |
| GATGATGATTAGATCGATTT+GGG | 0.294634 | 5_3:+68799408 | None:intergenic |
| CTCATTTCTAACAGCAGTTC+TGG | 0.299944 | 5_3:-68797276 | Msa0827500:CDS |
| ACGTTTGGTGGAACGAGATT+TGG | 0.307300 | 5_3:+68799114 | None:intergenic |
| CTTCTTCTCAACTGGAGTTC+AGG | 0.308892 | 5_3:-68797830 | Msa0827500:intron |
| AAGAGAAGGAACACGATGTT+AGG | 0.312973 | 5_3:-68798880 | Msa0827500:CDS |
| CGTTTGGTGGAACGAGATTT+GGG | 0.316661 | 5_3:+68799115 | None:intergenic |
| AGGAAGAGTATTCTTTGTTC+TGG | 0.324354 | 5_3:+68798988 | None:intergenic |
| TGATGATGATTAGATCGATT+TGG | 0.327141 | 5_3:+68799407 | None:intergenic |
| TGCTGGCAGTTCTGCGCAAC+AGG | 0.331384 | 5_3:-68796692 | Msa0827500:CDS |
| GTTGAAGAAAACCCTAAATT+GGG | 0.332562 | 5_3:+68799464 | None:intergenic |
| AAAGACATTCTCTCTGGTTC+TGG | 0.336236 | 5_3:-68797052 | Msa0827500:CDS |
| TCGAAAACTTGGTGCGGGTT+TGG | 0.340062 | 5_3:-68798711 | Msa0827500:CDS |
| TATTTGGACTTCTTCTCAAC+TGG | 0.343221 | 5_3:-68797838 | Msa0827500:CDS |
| AGCTAAATCCATATACTCTA+TGG | 0.346281 | 5_3:+68798346 | None:intergenic |
| CTTTCCGCGGCGCCGCGAAC+CGG | 0.374742 | 5_3:+68798934 | None:intergenic |
| TTTGTGAAATACTATCTATT+GGG | 0.380630 | 5_3:-68798565 | Msa0827500:CDS |
| GATGATTTGCTACCATCATC+TGG | 0.385145 | 5_3:-68798689 | Msa0827500:CDS |
| CCTACGAGCCGGGGCTCTCA+TGG | 0.386899 | 5_3:-68797872 | Msa0827500:CDS |
| GAATCCTGAAAGGGATAATT+CGG | 0.390522 | 5_3:-68798912 | Msa0827500:CDS |
| TGGAAATGTTCCTGAGATAT+CGG | 0.393748 | 5_3:-68796659 | Msa0827500:CDS |
| CACACGATTCTTTCATTCTA+GGG | 0.400412 | 5_3:-68799359 | Msa0827500:five_prime_UTR |
| TCACGAATTGCACGGTGGTT+TGG | 0.401769 | 5_3:-68799211 | Msa0827500:five_prime_UTR |
| CAAGGGTTGCTTCGAAAACT+TGG | 0.402774 | 5_3:-68798722 | Msa0827500:CDS |
| TGTTGCGGCGGCAGCGGTGG+AGG | 0.403236 | 5_3:+68799069 | None:intergenic |
| AGTGAAATTGAGAGGAAATA+GGG | 0.405507 | 5_3:+68799439 | None:intergenic |
| GAAAGGGATAATTCGGATAA+GGG | 0.408361 | 5_3:-68798905 | Msa0827500:CDS |
| CAGATCGATGGATCGAATCT+TGG | 0.410843 | 5_3:+68799290 | None:intergenic |
| CGTTTGTGCCAGTGCTTGTT+GGG | 0.411607 | 5_3:-68798508 | Msa0827500:CDS |
| TGTGCTGCTGTTGTGCACTA+TGG | 0.417887 | 5_3:-68798401 | Msa0827500:CDS |
| AAGGGATGCTGAGAAAGGTT+TGG | 0.430921 | 5_3:-68798846 | Msa0827500:CDS |
| TGAAAGGGATAATTCGGATA+AGG | 0.431739 | 5_3:-68798906 | Msa0827500:CDS |
| GAGGGAGAAGCTCATTTGTC+AGG | 0.437873 | 5_3:+68796788 | None:intergenic |
| TCGTTTGTGCCAGTGCTTGT+TGG | 0.441531 | 5_3:-68798509 | Msa0827500:CDS |
| AGAAGAAAGACGAGGACGTT+TGG | 0.441991 | 5_3:+68799099 | None:intergenic |
| TTCACAAAATTGGTGCTGAC+AGG | 0.447625 | 5_3:+68796739 | None:intergenic |
| TCGAACAATGAATCATCTTC+CGG | 0.448475 | 5_3:-68798953 | Msa0827500:CDS |
| TGGAAACTCGTAGTCGGAAG+CGG | 0.451282 | 5_3:-68799180 | Msa0827500:CDS |
| GCAGCAAGAAGCATAATATC+AGG | 0.452732 | 5_3:+68798464 | None:intergenic |
| TTAAGGGCTGAAGGGGAAGA+AGG | 0.454807 | 5_3:-68798614 | Msa0827500:CDS |
| ATTCTTAAAGACATTCTCTC+TGG | 0.455937 | 5_3:-68797058 | Msa0827500:CDS |
| GAGAGCCCCGGCTCGTAGGC+AGG | 0.455968 | 5_3:+68797876 | None:intergenic |
| GAATACTCTTCCTCCTCCTA+TGG | 0.458988 | 5_3:-68798978 | Msa0827500:CDS |
| CGAGTATTGGTGGTTGGCGT+TGG | 0.459085 | 5_3:+68799022 | None:intergenic |
| CAGCAGTTCTGGAGGTGGAC+AGG | 0.459806 | 5_3:-68797265 | Msa0827500:CDS |
| CGGCTCGTAGGCAGGCAGTT+GGG | 0.460521 | 5_3:+68797884 | None:intergenic |
| CCAACTGCCTGCCTACGAGC+CGG | 0.461881 | 5_3:-68797883 | Msa0827500:CDS |
| AGAGAATGTCTTTAAGAATA+CGG | 0.462580 | 5_3:+68797062 | None:intergenic |
| TGAAGCATTTGCATCATCTT+CGG | 0.464720 | 5_3:-68797349 | Msa0827500:CDS |
| CAACTGCCTGCCTACGAGCC+GGG | 0.465617 | 5_3:-68797882 | Msa0827500:CDS |
| TTGTTTGGGTTAAGGGCTGA+AGG | 0.465724 | 5_3:-68798623 | Msa0827500:CDS |
| GGTGGTTGTTGCGGCGGCAG+CGG | 0.466174 | 5_3:+68799063 | None:intergenic |
| TCTAAAACTCTGCTACTTCT+CGG | 0.469923 | 5_3:-68797091 | Msa0827500:CDS |
| TTCTCACGAGCCGATATCTC+AGG | 0.471780 | 5_3:+68796649 | None:intergenic |
| CTGTTTCTCCTGCATTAAGT+AGG | 0.472381 | 5_3:-68797012 | Msa0827500:CDS |
| TGTGCAAGCGGGTCTCCTCT+TGG | 0.476475 | 5_3:-68797115 | Msa0827500:CDS |
| GTATATGGATTTAGCTGAGC+AGG | 0.476549 | 5_3:-68798339 | Msa0827500:intron |
| GGTTGTTGCGGCGGCAGCGG+TGG | 0.479596 | 5_3:+68799066 | None:intergenic |
| TTGAAGCTGGTGCTGGTGAT+GGG | 0.479820 | 5_3:-68798814 | Msa0827500:CDS |
| TTCTTTCAACTTGTGCAAGC+GGG | 0.481698 | 5_3:-68797126 | Msa0827500:CDS |
| TTGAATGTTGAAGCTGGTGC+TGG | 0.481950 | 5_3:-68798821 | Msa0827500:CDS |
| GTTGAAGCTGGTGCTGGTGA+TGG | 0.484744 | 5_3:-68798815 | Msa0827500:CDS |
| CTTCTTTCAACTTGTGCAAG+CGG | 0.484791 | 5_3:-68797127 | Msa0827500:CDS |
| TTAGATGAATTATGCAATCA+TGG | 0.486758 | 5_3:-68797321 | Msa0827500:CDS |
| TTGCTACCATCATCTGGAAT+GGG | 0.490525 | 5_3:-68798683 | Msa0827500:CDS |
| GCAGGCAGTTGGGTGCTCCT+GGG | 0.493993 | 5_3:+68797894 | None:intergenic |
| CCGGCTCGTAGGCAGGCAGT+TGG | 0.499749 | 5_3:+68797883 | None:intergenic |
| ATTAAGTAGGCCACCAGAGC+AGG | 0.499907 | 5_3:-68796999 | Msa0827500:intron |
| TTTGCTACCATCATCTGGAA+TGG | 0.500776 | 5_3:-68798684 | Msa0827500:CDS |
| CATTCAAAGGTTCAGATCGA+TGG | 0.503004 | 5_3:+68799278 | None:intergenic |
| TGGTGTAGCAGTGGCTGTTA+CGG | 0.507670 | 5_3:+68799042 | None:intergenic |
| TTAAGCTAACCTTGGCATCA+TGG | 0.511023 | 5_3:+68797582 | None:intergenic |
| GATAATCAATTATCATTCAA+AGG | 0.513602 | 5_3:+68799265 | None:intergenic |
| GCGCAACAGGAAGACACAAA+TGG | 0.517488 | 5_3:-68796679 | Msa0827500:CDS |
| TCGTAGTCGGAAGCGGGCGG+AGG | 0.517826 | 5_3:-68799173 | Msa0827500:CDS |
| GAAGTACACTATACCTGCTC+TGG | 0.518013 | 5_3:+68796986 | None:intergenic |
| GAAATAGTTCCTTGCGGCAA+TGG | 0.518650 | 5_3:+68796766 | None:intergenic |
| TGTTTGGGTTAAGGGCTGAA+GGG | 0.519027 | 5_3:-68798622 | Msa0827500:CDS |
| GTTTGGGTTAAGGGCTGAAG+GGG | 0.521471 | 5_3:-68798621 | Msa0827500:CDS |
| AATTCACTTACTGTATATGT+TGG | 0.521972 | 5_3:+68797228 | None:intergenic |
| GGAGATGATGAAGAAGATGA+AGG | 0.528890 | 5_3:+68799136 | None:intergenic |
| CGTGTACGAGTATTGGTGGT+TGG | 0.529586 | 5_3:+68799016 | None:intergenic |
| TATTATGCTTCTTGCTGCGA+GGG | 0.529648 | 5_3:-68798459 | Msa0827500:CDS |
| CCTTGGCATCATGGTACTGA+AGG | 0.529744 | 5_3:+68797591 | None:intergenic |
| TTGCTTCGAAAACTTGGTGC+GGG | 0.531237 | 5_3:-68798716 | Msa0827500:CDS |
| AGATGCATCTGACTTTGTGA+TGG | 0.532642 | 5_3:-68797639 | Msa0827500:CDS |
| TTCAGCAACCCAACAAGCAC+TGG | 0.535051 | 5_3:+68798500 | None:intergenic |
| GGAAACTCGTAGTCGGAAGC+GGG | 0.535187 | 5_3:-68799179 | Msa0827500:CDS |
| AGCTCTAAAGAAAATATCCC+AGG | 0.537197 | 5_3:-68797911 | Msa0827500:CDS |
| ATGAATCATCTTCCGGTTCG+CGG | 0.537851 | 5_3:-68798946 | Msa0827500:CDS |
| ATGTTAGGGCTAGGAATGAA+AGG | 0.542397 | 5_3:-68798865 | Msa0827500:CDS |
| ATAGTTCCTTGCGGCAATGG+AGG | 0.543922 | 5_3:+68796769 | None:intergenic |
| CCATGAGAGCCCCGGCTCGT+AGG | 0.547196 | 5_3:+68797872 | None:intergenic |
| AACAAACAGAGGCATGCTCC+AGG | 0.548322 | 5_3:+68797385 | None:intergenic |
| AGAAAGACGAGGACGTTTGG+TGG | 0.548589 | 5_3:+68799102 | None:intergenic |
| GGCTGTTACGGTGGTTGTTG+CGG | 0.550743 | 5_3:+68799054 | None:intergenic |
| AATGAAAGGGATGCTGAGAA+AGG | 0.551234 | 5_3:-68798851 | Msa0827500:CDS |
| CAGCACAGCCATGAGAGCCC+CGG | 0.555025 | 5_3:+68797864 | None:intergenic |
| AGGAACACGATGTTAGGGCT+AGG | 0.556251 | 5_3:-68798874 | Msa0827500:CDS |
| AGATGATGAAGAAGATGAAG+GGG | 0.560512 | 5_3:+68799138 | None:intergenic |
| GAGATGATGAAGAAGATGAA+GGG | 0.561116 | 5_3:+68799137 | None:intergenic |
| TCACAAAATTGGTGCTGACA+GGG | 0.561288 | 5_3:+68796740 | None:intergenic |
| AGAAGATGAAGGGGCAGCTG+AGG | 0.561621 | 5_3:+68799147 | None:intergenic |
| TTGCACAAGTTGAAAGAAGT+CGG | 0.563684 | 5_3:+68797131 | None:intergenic |
| GAAAACCCTAAATTGGGGAA+AGG | 0.565015 | 5_3:+68799470 | None:intergenic |
| ATATTATGCTTCTTGCTGCG+AGG | 0.565866 | 5_3:-68798460 | Msa0827500:CDS |
| AGAGAAGGAACACGATGTTA+GGG | 0.566378 | 5_3:-68798879 | Msa0827500:CDS |
| TCTGCAAGCAGTGCACTACA+AGG | 0.567065 | 5_3:-68798740 | Msa0827500:CDS |
| AACTGCCTGCCTACGAGCCG+GGG | 0.569244 | 5_3:-68797881 | Msa0827500:CDS |
| CCCTTTCAGGATTCTTTCCG+CGG | 0.569758 | 5_3:+68798921 | None:intergenic |
| TCTAACAGCAGTTCTGGAGG+TGG | 0.570392 | 5_3:-68797270 | Msa0827500:CDS |
| GAAGAACCCATTCCAGATGA+TGG | 0.571442 | 5_3:+68798677 | None:intergenic |
| CTTCATCTCATCAGAGTGGG+AGG | 0.572309 | 5_3:-68798658 | Msa0827500:CDS |
| GATGATAGTGACAGTGGCGT+TGG | 0.572499 | 5_3:-68798785 | Msa0827500:CDS |
| GATTCATTGTTCGAGTCCAT+AGG | 0.572597 | 5_3:+68798962 | None:intergenic |
| TCTGGTGGCCTACTTAATGC+AGG | 0.575522 | 5_3:+68797004 | None:intergenic |
| GGAAGCGCGTGTACGAGTAT+TGG | 0.576322 | 5_3:+68799009 | None:intergenic |
| TGAATTATGCAATCATGGAC+TGG | 0.578498 | 5_3:-68797316 | Msa0827500:CDS |
| TAGTTCCTTGCGGCAATGGA+GGG | 0.580797 | 5_3:+68796770 | None:intergenic |
| GGAAGAAGGTAGACAAGTTG+AGG | 0.581910 | 5_3:-68798600 | Msa0827500:CDS |
| GCCGCGGAAAGAATCCTGAA+AGG | 0.586500 | 5_3:-68798922 | Msa0827500:CDS |
| TGTTAGGGCTAGGAATGAAA+GGG | 0.587669 | 5_3:-68798864 | Msa0827500:CDS |
| CTGTTTCAATATTCTGCGCG+AGG | 0.590483 | 5_3:-68798376 | Msa0827500:CDS |
| TGTTGCGCAGAACTGCCAGC+AGG | 0.591571 | 5_3:+68796694 | None:intergenic |
| TGAAGGAGGTTAGTCAGAAG+AGG | 0.591769 | 5_3:+68797608 | None:intergenic |
| TTGTTCGAGTCCATAGGAGG+AGG | 0.594718 | 5_3:+68798968 | None:intergenic |
| TTTGTATGGAAACTCGTAGT+CGG | 0.595067 | 5_3:-68799186 | Msa0827500:exon |
| AAAGGGATAATTCGGATAAG+GGG | 0.595681 | 5_3:-68798904 | Msa0827500:CDS |
| ACAAAGTCAGATGCATCTGA+AGG | 0.598347 | 5_3:+68797644 | None:intergenic |
| AGCGCGTGTACGAGTATTGG+TGG | 0.599220 | 5_3:+68799012 | None:intergenic |
| CTTCTCCCTCCATTGCCGCA+AGG | 0.600420 | 5_3:-68796775 | Msa0827500:CDS |
| CCGCGGAAAGAATCCTGAAA+GGG | 0.606380 | 5_3:-68798921 | Msa0827500:CDS |
| ACAACAGCAGCACACGACGA+AGG | 0.609421 | 5_3:+68798410 | None:intergenic |
| TCATTGTTCGAGTCCATAGG+AGG | 0.609682 | 5_3:+68798965 | None:intergenic |
| ATGATGATTAGATCGATTTG+GGG | 0.609928 | 5_3:+68799409 | None:intergenic |
| TTCGGATAAGGGGAAAGAGA+AGG | 0.611564 | 5_3:-68798894 | Msa0827500:CDS |
| TCTTCCGGTTCGCGGCGCCG+CGG | 0.616904 | 5_3:-68798938 | Msa0827500:CDS |
| GTACACTATACCTGCTCTGG+TGG | 0.618314 | 5_3:+68796989 | None:intergenic |
| AAAATTGGTGCTGACAGGGA+GGG | 0.620173 | 5_3:+68796744 | None:intergenic |
| GTTCTTCATCTCATCAGAGT+GGG | 0.620524 | 5_3:-68798661 | Msa0827500:CDS |
| AACTCGTAGTCGGAAGCGGG+CGG | 0.624808 | 5_3:-68799176 | Msa0827500:CDS |
| TGTAGCAGTGGCTGTTACGG+TGG | 0.625998 | 5_3:+68799045 | None:intergenic |
| ATTTCTAACAGCAGTTCTGG+AGG | 0.626432 | 5_3:-68797273 | Msa0827500:CDS |
| TTGAAGAAAACCCTAAATTG+GGG | 0.626621 | 5_3:+68799465 | None:intergenic |
| TGAAGCTGGTGCTGGTGATG+GGG | 0.627947 | 5_3:-68798813 | Msa0827500:CDS |
| GGAAAGTGAGTGAAATTGAG+AGG | 0.630376 | 5_3:+68799431 | None:intergenic |
| GTTGCTTCGAAAACTTGGTG+CGG | 0.642232 | 5_3:-68798717 | Msa0827500:CDS |
| CCTTCAGTACCATGATGCCA+AGG | 0.645685 | 5_3:-68797591 | Msa0827500:intron |
| TGTTACGGTGGTTGTTGCGG+CGG | 0.646913 | 5_3:+68799057 | None:intergenic |
| AATACTATCTATTGGGACTG+AGG | 0.648290 | 5_3:-68798558 | Msa0827500:CDS |
| GGTTGGCGTTGGTGTAGCAG+TGG | 0.650515 | 5_3:+68799033 | None:intergenic |
| TGGCATCATGGTACTGAAGG+AGG | 0.652257 | 5_3:+68797594 | None:intergenic |
| GAGCGAGTTCACGAATTGCA+CGG | 0.658770 | 5_3:-68799219 | Msa0827500:five_prime_UTR |
| CAAAATTGGTGCTGACAGGG+AGG | 0.673142 | 5_3:+68796743 | None:intergenic |
| GGTTCTTCATCTCATCAGAG+TGG | 0.677902 | 5_3:-68798662 | Msa0827500:CDS |
| CTGCAAGCAGTGCACTACAA+GGG | 0.681877 | 5_3:-68798739 | Msa0827500:CDS |
| TGATGATTAGATCGATTTGG+GGG | 0.691540 | 5_3:+68799410 | None:intergenic |
| TATTCGAGTCAAACAAACAG+AGG | 0.693831 | 5_3:+68797374 | None:intergenic |
| ATTCGTGAACTCGCTCACGA+CGG | 0.706374 | 5_3:+68799226 | None:intergenic |
| ACTGCTGTTAGAAATGAGTG+AGG | 0.720890 | 5_3:+68797281 | None:intergenic |
| CGAGTTCACGAATTGCACGG+TGG | 0.727896 | 5_3:-68799216 | Msa0827500:five_prime_UTR |
| GATGATGATGATAGTGACAG+TGG | 0.744048 | 5_3:-68798791 | Msa0827500:CDS |
| GGGAGGGAAATAGTTCCTTG+CGG | 0.746535 | 5_3:+68796760 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTATATTATGGATTAT+GGG | + | chr5_3:68798658-68798677 | None:intergenic | 10.0% |
| !!! | TAAATTTATATTATGGATTA+TGG | + | chr5_3:68798659-68798678 | None:intergenic | 10.0% |
| !!! | AACAATGATTACTTATTTTA+TGG | - | chr5_3:68797952-68797971 | Msa0827500:intron | 15.0% |
| !!! | ACAATGATTACTTATTTTAT+GGG | - | chr5_3:68797953-68797972 | Msa0827500:intron | 15.0% |
| !!! | TAAGATGTTTAATTGTTTTT+AGG | - | chr5_3:68797980-68797999 | Msa0827500:intron | 15.0% |
| !! | TCTAAATAGTTAAAACTATA+TGG | + | chr5_3:68798603-68798622 | None:intergenic | 15.0% |
| !!! | AATTTATATTATGGATTATG+GGG | + | chr5_3:68798657-68798676 | None:intergenic | 15.0% |
| !! | GATAATCAATTATCATTCAA+AGG | + | chr5_3:68796841-68796860 | None:intergenic | 20.0% |
| !! | TTTGTGAAATACTATCTATT+GGG | - | chr5_3:68797538-68797557 | Msa0827500:intron | 20.0% |
| !!! | CAATGATTACTTATTTTATG+GGG | - | chr5_3:68797954-68797973 | Msa0827500:intron | 20.0% |
| !!! | GTCATATTTTATGTTGTTAT+AGG | - | chr5_3:68798029-68798048 | Msa0827500:intron | 20.0% |
| !!! | GATTTTTAATTGTTTCATTG+CGG | - | chr5_3:68798142-68798161 | Msa0827500:intron | 20.0% |
| !! | AAAACTATATGGATGTAAAA+AGG | + | chr5_3:68798592-68798611 | None:intergenic | 20.0% |
| !! | AGAAATTTAAATTGCATGTA+AGG | + | chr5_3:68798692-68798711 | None:intergenic | 20.0% |
| ! | CTTTGTGAAATACTATCTAT+TGG | - | chr5_3:68797537-68797556 | Msa0827500:intron | 25.0% |
| ! | TAGGACTATTATGAAATTTG+AGG | - | chr5_3:68797999-68798018 | Msa0827500:intron | 25.0% |
| ! | AACAACATAAAATATGACCA+AGG | + | chr5_3:68798027-68798046 | None:intergenic | 25.0% |
| !! | GTCATATTTTACGTTGTTAT+AGG | - | chr5_3:68798076-68798095 | Msa0827500:intron | 25.0% |
| ! | GGATATATGCATTTGTTTAT+TGG | - | chr5_3:68798097-68798116 | Msa0827500:intron | 25.0% |
| ! | ATTTGTTTATTGGTGAGTAT+GGG | - | chr5_3:68798107-68798126 | Msa0827500:intron | 25.0% |
| !!! | TATTTTCTTTAGAGCTTGAA+GGG | + | chr5_3:68798188-68798207 | None:intergenic | 25.0% |
| !!! | ATATTTTCTTTAGAGCTTGA+AGG | + | chr5_3:68798189-68798208 | None:intergenic | 25.0% |
| ! | TCATAACATCATCTAAATGT+AGG | + | chr5_3:68798316-68798335 | None:intergenic | 25.0% |
| ! | CATGCAATTTAAATTTCTGT+AGG | - | chr5_3:68798694-68798713 | Msa0827500:CDS | 25.0% |
| ! | TTAGATGAATTATGCAATCA+TGG | - | chr5_3:68798782-68798801 | Msa0827500:CDS | 25.0% |
| ! | AATTCACTTACTGTATATGT+TGG | + | chr5_3:68798878-68798897 | None:intergenic | 25.0% |
| !!! | AGTGAATTTTTTCTTCCTTT+AGG | - | chr5_3:68798890-68798909 | Msa0827500:CDS | 25.0% |
| !! | AGAGAATGTCTTTAAGAATA+CGG | + | chr5_3:68799044-68799063 | None:intergenic | 25.0% |
| ! | AAAACAACACATGAATAACA+CGG | + | chr5_3:68799154-68799173 | None:intergenic | 25.0% |
| ! | AATCTCAAATATCTGTGTAT+TGG | + | chr5_3:68799290-68799309 | None:intergenic | 25.0% |
| TTGAAGAAAACCCTAAATTG+GGG | + | chr5_3:68796641-68796660 | None:intergenic | 30.0% | |
| GTTGAAGAAAACCCTAAATT+GGG | + | chr5_3:68796642-68796661 | None:intergenic | 30.0% | |
| TGTTGAAGAAAACCCTAAAT+TGG | + | chr5_3:68796643-68796662 | None:intergenic | 30.0% | |
| AGTGAAATTGAGAGGAAATA+GGG | + | chr5_3:68796667-68796686 | None:intergenic | 30.0% | |
| !! | ATGATGATTAGATCGATTTG+GGG | + | chr5_3:68796697-68796716 | None:intergenic | 30.0% |
| ! | GATGATGATTAGATCGATTT+GGG | + | chr5_3:68796698-68796717 | None:intergenic | 30.0% |
| ! | TGATGATGATTAGATCGATT+TGG | + | chr5_3:68796699-68796718 | None:intergenic | 30.0% |
| !! | AGAAGATTTTGTTTGGGTTA+AGG | - | chr5_3:68797472-68797491 | Msa0827500:intron | 30.0% |
| !! | GAAGATTTTGTTTGGGTTAA+GGG | - | chr5_3:68797473-68797492 | Msa0827500:intron | 30.0% |
| AGCTAAATCCATATACTCTA+TGG | + | chr5_3:68797760-68797779 | None:intergenic | 30.0% | |
| GATTAACTGCATTGAGAATT+TGG | - | chr5_3:68797819-68797838 | Msa0827500:intron | 30.0% | |
| CAGAATGGTCATGAATAATA+GGG | + | chr5_3:68797902-68797921 | None:intergenic | 30.0% | |
| ACAGAATGGTCATGAATAAT+AGG | + | chr5_3:68797903-68797922 | None:intergenic | 30.0% | |
| TATTATTCATGACCATTCTG+TGG | - | chr5_3:68797902-68797921 | Msa0827500:CDS | 30.0% | |
| TGAAAACTGCATTGAGAATT+TGG | - | chr5_3:68797929-68797948 | Msa0827500:intron | 30.0% | |
| ! | TTATGAAATTTGAGGTTCCT+TGG | - | chr5_3:68798007-68798026 | Msa0827500:intron | 30.0% |
| ! | TATAGGATACATGCATTTTG+AGG | - | chr5_3:68798046-68798065 | Msa0827500:intron | 30.0% |
| AACAACGTAAAATATGACCA+AGG | + | chr5_3:68798074-68798093 | None:intergenic | 30.0% | |
| CATTTGTTTATTGGTGAGTA+TGG | - | chr5_3:68798106-68798125 | Msa0827500:intron | 30.0% | |
| !! | TTTTAATTGTTTCATTGCGG+TGG | - | chr5_3:68798145-68798164 | Msa0827500:intron | 30.0% |
| ATAGATAGTCACAACTCATT+TGG | - | chr5_3:68798342-68798361 | Msa0827500:CDS | 30.0% | |
| AACAAATCTTAAGCTAACCT+TGG | + | chr5_3:68798532-68798551 | None:intergenic | 30.0% | |
| ATTTAAATTTCTGTAGGTCC+TGG | - | chr5_3:68798700-68798719 | Msa0827500:CDS | 30.0% | |
| ATTCTTAAAGACATTCTCTC+TGG | - | chr5_3:68799045-68799064 | Msa0827500:CDS | 30.0% | |
| GTCATATGAATCACATAAAG+AGG | + | chr5_3:68799178-68799197 | None:intergenic | 30.0% | |
| ! | CATTTTCACCTTTAATTCAC+TGG | - | chr5_3:68799199-68799218 | Msa0827500:exon | 30.0% |
| GAATCTAACCAGTGAATTAA+AGG | + | chr5_3:68799210-68799229 | None:intergenic | 30.0% | |
| GAGTGAAATTGAGAGGAAAT+AGG | + | chr5_3:68796668-68796687 | None:intergenic | 35.0% | |
| !! | TGATGATTAGATCGATTTGG+GGG | + | chr5_3:68796696-68796715 | None:intergenic | 35.0% |
| TCACACGATTCTTTCATTCT+AGG | - | chr5_3:68796743-68796762 | Msa0827500:CDS | 35.0% | |
| CACACGATTCTTTCATTCTA+GGG | - | chr5_3:68796744-68796763 | Msa0827500:CDS | 35.0% | |
| TTTGTATGGAAACTCGTAGT+CGG | - | chr5_3:68796917-68796936 | Msa0827500:intron | 35.0% | |
| AGATGATGAAGAAGATGAAG+GGG | + | chr5_3:68796968-68796987 | None:intergenic | 35.0% | |
| GAGATGATGAAGAAGATGAA+GGG | + | chr5_3:68796969-68796988 | None:intergenic | 35.0% | |
| !! | AGGAAGAGTATTCTTTGTTC+TGG | + | chr5_3:68797118-68797137 | None:intergenic | 35.0% |
| TCGAACAATGAATCATCTTC+CGG | - | chr5_3:68797150-68797169 | Msa0827500:intron | 35.0% | |
| GAATCCTGAAAGGGATAATT+CGG | - | chr5_3:68797191-68797210 | Msa0827500:intron | 35.0% | |
| TTATCCGAATTATCCCTTTC+AGG | + | chr5_3:68797198-68797217 | None:intergenic | 35.0% | |
| TGAAAGGGATAATTCGGATA+AGG | - | chr5_3:68797197-68797216 | Msa0827500:intron | 35.0% | |
| GAAAGGGATAATTCGGATAA+GGG | - | chr5_3:68797198-68797217 | Msa0827500:intron | 35.0% | |
| AAAGGGATAATTCGGATAAG+GGG | - | chr5_3:68797199-68797218 | Msa0827500:intron | 35.0% | |
| !!! | TTGGTTTTGAATGTTGAAGC+TGG | - | chr5_3:68797276-68797295 | Msa0827500:CDS | 35.0% |
| ! | AGGCTGAAGAAGATTTTGTT+TGG | - | chr5_3:68797465-68797484 | Msa0827500:intron | 35.0% |
| !! | GGCTGAAGAAGATTTTGTTT+GGG | - | chr5_3:68797466-68797485 | Msa0827500:intron | 35.0% |
| AATACTATCTATTGGGACTG+AGG | - | chr5_3:68797545-68797564 | Msa0827500:intron | 35.0% | |
| !! | GGATTCGTTGAGTACTTTTT+CGG | - | chr5_3:68797566-68797585 | Msa0827500:intron | 35.0% |
| GTTGCTTACCATAGAGTATA+TGG | - | chr5_3:68797749-68797768 | Msa0827500:intron | 35.0% | |
| !! | AGCTCTAAAGAAAATATCCC+AGG | - | chr5_3:68798192-68798211 | Msa0827500:intron | 35.0% |
| TATTTGGACTTCTTCTCAAC+TGG | - | chr5_3:68798265-68798284 | Msa0827500:intron | 35.0% | |
| !!! | AGAAAGTTTTGTTTGATCCG+AGG | - | chr5_3:68798620-68798639 | Msa0827500:CDS | 35.0% |
| ! | ATGGGGATCAAAATTTTCCT+CGG | + | chr5_3:68798640-68798659 | None:intergenic | 35.0% |
| TATTCGAGTCAAACAAACAG+AGG | + | chr5_3:68798732-68798751 | None:intergenic | 35.0% | |
| ! | TGAAGCATTTGCATCATCTT+CGG | - | chr5_3:68798754-68798773 | Msa0827500:CDS | 35.0% |
| TGAATTATGCAATCATGGAC+TGG | - | chr5_3:68798787-68798806 | Msa0827500:CDS | 35.0% | |
| ATGCTTTGTCCTATTGTTGT+TGG | - | chr5_3:68798917-68798936 | Msa0827500:CDS | 35.0% | |
| ! | TTGCACAAGTTGAAAGAAGT+CGG | + | chr5_3:68798975-68798994 | None:intergenic | 35.0% |
| ! | TCTAAAACTCTGCTACTTCT+CGG | - | chr5_3:68799012-68799031 | Msa0827500:CDS | 35.0% |
| CTCTTAGCATTGTTAAGAGA+TGG | - | chr5_3:68799242-68799261 | Msa0827500:five_prime_UTR | 35.0% | |
| TGGAAATGTTCCTGAGATAT+CGG | - | chr5_3:68799444-68799463 | Msa0827500:five_prime_UTR | 35.0% | |
| GGAAAGTGAGTGAAATTGAG+AGG | + | chr5_3:68796675-68796694 | None:intergenic | 40.0% | |
| CATTCAAAGGTTCAGATCGA+TGG | + | chr5_3:68796828-68796847 | None:intergenic | 40.0% | |
| !!! | ACGGTGGTTTGGTTTTTGTA+TGG | - | chr5_3:68796903-68796922 | Msa0827500:intron | 40.0% |
| GGAGATGATGAAGAAGATGA+AGG | + | chr5_3:68796970-68796989 | None:intergenic | 40.0% | |
| GAAGAAGAAGAAGAAAGACG+AGG | + | chr5_3:68797015-68797034 | None:intergenic | 40.0% | |
| GATTCATTGTTCGAGTCCAT+AGG | + | chr5_3:68797144-68797163 | None:intergenic | 40.0% | |
| AAGAGAAGGAACACGATGTT+AGG | - | chr5_3:68797223-68797242 | Msa0827500:intron | 40.0% | |
| AGAGAAGGAACACGATGTTA+GGG | - | chr5_3:68797224-68797243 | Msa0827500:intron | 40.0% | |
| ATGTTAGGGCTAGGAATGAA+AGG | - | chr5_3:68797238-68797257 | Msa0827500:intron | 40.0% | |
| TGTTAGGGCTAGGAATGAAA+GGG | - | chr5_3:68797239-68797258 | Msa0827500:CDS | 40.0% | |
| AATGAAAGGGATGCTGAGAA+AGG | - | chr5_3:68797252-68797271 | Msa0827500:CDS | 40.0% | |
| ! | GATGATGATGATAGTGACAG+TGG | - | chr5_3:68797312-68797331 | Msa0827500:CDS | 40.0% |
| !! | GATGATTTGCTACCATCATC+TGG | - | chr5_3:68797414-68797433 | Msa0827500:intron | 40.0% |
| TTTGCTACCATCATCTGGAA+TGG | - | chr5_3:68797419-68797438 | Msa0827500:intron | 40.0% | |
| ! | TTGCTACCATCATCTGGAAT+GGG | - | chr5_3:68797420-68797439 | Msa0827500:intron | 40.0% |
| GTTCTTCATCTCATCAGAGT+GGG | - | chr5_3:68797442-68797461 | Msa0827500:intron | 40.0% | |
| ! | GCAGCAAGAAGCATAATATC+AGG | + | chr5_3:68797642-68797661 | None:intergenic | 40.0% |
| ATATTATGCTTCTTGCTGCG+AGG | - | chr5_3:68797643-68797662 | Msa0827500:CDS | 40.0% | |
| TATTATGCTTCTTGCTGCGA+GGG | - | chr5_3:68797644-68797663 | Msa0827500:CDS | 40.0% | |
| GTATATGGATTTAGCTGAGC+AGG | - | chr5_3:68797764-68797783 | Msa0827500:intron | 40.0% | |
| ! | AGTTTTCACTGACCACAGAA+TGG | + | chr5_3:68797917-68797936 | None:intergenic | 40.0% |
| !!! | ACATGCATTTTGAGGTTCCT+TGG | - | chr5_3:68798054-68798073 | Msa0827500:intron | 40.0% |
| ! | GTCACAACTCATTTGGTGAT+AGG | - | chr5_3:68798349-68798368 | Msa0827500:CDS | 40.0% |
| TGGTGATAGGCAGTTTAGTT+AGG | - | chr5_3:68798362-68798381 | Msa0827500:CDS | 40.0% | |
| ACAAAGTCAGATGCATCTGA+AGG | + | chr5_3:68798462-68798481 | None:intergenic | 40.0% | |
| AGATGCATCTGACTTTGTGA+TGG | - | chr5_3:68798464-68798483 | Msa0827500:CDS | 40.0% | |
| TTAAGCTAACCTTGGCATCA+TGG | + | chr5_3:68798524-68798543 | None:intergenic | 40.0% | |
| ACTGCTGTTAGAAATGAGTG+AGG | + | chr5_3:68798825-68798844 | None:intergenic | 40.0% | |
| CTCATTTCTAACAGCAGTTC+TGG | - | chr5_3:68798827-68798846 | Msa0827500:CDS | 40.0% | |
| ! | ATTTCTAACAGCAGTTCTGG+AGG | - | chr5_3:68798830-68798849 | Msa0827500:CDS | 40.0% |
| !! | GGACAAAGCATTGTACCTAA+AGG | + | chr5_3:68798908-68798927 | None:intergenic | 40.0% |
| GGTCAAGAACCAACAACAAT+AGG | + | chr5_3:68798929-68798948 | None:intergenic | 40.0% | |
| CTTCTTTCAACTTGTGCAAG+CGG | - | chr5_3:68798976-68798995 | Msa0827500:CDS | 40.0% | |
| TTCTTTCAACTTGTGCAAGC+GGG | - | chr5_3:68798977-68798996 | Msa0827500:CDS | 40.0% | |
| !!! | AGCAGAGTTTTAGAACCAAG+AGG | + | chr5_3:68799006-68799025 | None:intergenic | 40.0% |
| ! | AAAGACATTCTCTCTGGTTC+TGG | - | chr5_3:68799051-68799070 | Msa0827500:CDS | 40.0% |
| ! | CTGTTTCTCCTGCATTAAGT+AGG | - | chr5_3:68799091-68799110 | Msa0827500:CDS | 40.0% |
| !! | TCACAAAATTGGTGCTGACA+GGG | + | chr5_3:68799366-68799385 | None:intergenic | 40.0% |
| !! | TTCACAAAATTGGTGCTGAC+AGG | + | chr5_3:68799367-68799386 | None:intergenic | 40.0% |
| ! | TGTCAGCACCAATTTTGTGA+AGG | - | chr5_3:68799366-68799385 | Msa0827500:five_prime_UTR | 40.0% |
| ! | GTCAGCACCAATTTTGTGAA+GGG | - | chr5_3:68799367-68799386 | Msa0827500:five_prime_UTR | 40.0% |
| ! | TCAGCACCAATTTTGTGAAG+GGG | - | chr5_3:68799368-68799387 | Msa0827500:five_prime_UTR | 40.0% |
| !!! | GCAGGAGACTTTTTTACAAC+AGG | + | chr5_3:68799394-68799413 | None:intergenic | 40.0% |
| GTTGTAAAAAAGTCTCCTGC+TGG | - | chr5_3:68799394-68799413 | Msa0827500:five_prime_UTR | 40.0% | |
| CAGATCGATGGATCGAATCT+TGG | + | chr5_3:68796816-68796835 | None:intergenic | 45.0% | |
| ! | CGTTTGGTGGAACGAGATTT+GGG | + | chr5_3:68796991-68797010 | None:intergenic | 45.0% |
| ! | ACGTTTGGTGGAACGAGATT+TGG | + | chr5_3:68796992-68797011 | None:intergenic | 45.0% |
| AGAAGAAAGACGAGGACGTT+TGG | + | chr5_3:68797007-68797026 | None:intergenic | 45.0% | |
| GAATACTCTTCCTCCTCCTA+TGG | - | chr5_3:68797125-68797144 | Msa0827500:CDS | 45.0% | |
| TCATTGTTCGAGTCCATAGG+AGG | + | chr5_3:68797141-68797160 | None:intergenic | 45.0% | |
| ! | ATGAATCATCTTCCGGTTCG+CGG | - | chr5_3:68797157-68797176 | Msa0827500:intron | 45.0% |
| TTCGGATAAGGGGAAAGAGA+AGG | - | chr5_3:68797209-68797228 | Msa0827500:intron | 45.0% | |
| AAGGGATGCTGAGAAAGGTT+TGG | - | chr5_3:68797257-68797276 | Msa0827500:CDS | 45.0% | |
| TTGAATGTTGAAGCTGGTGC+TGG | - | chr5_3:68797282-68797301 | Msa0827500:CDS | 45.0% | |
| CAAGGGTTGCTTCGAAAACT+TGG | - | chr5_3:68797381-68797400 | Msa0827500:CDS | 45.0% | |
| ! | GTTGCTTCGAAAACTTGGTG+CGG | - | chr5_3:68797386-68797405 | Msa0827500:CDS | 45.0% |
| !! | TTGCTTCGAAAACTTGGTGC+GGG | - | chr5_3:68797387-68797406 | Msa0827500:CDS | 45.0% |
| GAAGAACCCATTCCAGATGA+TGG | + | chr5_3:68797429-68797448 | None:intergenic | 45.0% | |
| GGTTCTTCATCTCATCAGAG+TGG | - | chr5_3:68797441-68797460 | Msa0827500:intron | 45.0% | |
| ! | TTGTTTGGGTTAAGGGCTGA+AGG | - | chr5_3:68797480-68797499 | Msa0827500:intron | 45.0% |
| ! | TGTTTGGGTTAAGGGCTGAA+GGG | - | chr5_3:68797481-68797500 | Msa0827500:intron | 45.0% |
| GGAAGAAGGTAGACAAGTTG+AGG | - | chr5_3:68797503-68797522 | Msa0827500:intron | 45.0% | |
| CTGTTTCAATATTCTGCGCG+AGG | - | chr5_3:68797727-68797746 | Msa0827500:intron | 45.0% | |
| ! | CATGGCTGTGCTGTCTTATT+TGG | - | chr5_3:68798249-68798268 | Msa0827500:intron | 45.0% |
| CTTCTTCTCAACTGGAGTTC+AGG | - | chr5_3:68798273-68798292 | Msa0827500:intron | 45.0% | |
| ! | TGAAGGAGGTTAGTCAGAAG+AGG | + | chr5_3:68798498-68798517 | None:intergenic | 45.0% |
| !! | GTTGTTGGTTCTTGACCTCA+AGG | - | chr5_3:68798932-68798951 | Msa0827500:CDS | 45.0% |
| TTGACCTCAAGGCATATGCA+GGG | - | chr5_3:68798943-68798962 | Msa0827500:CDS | 45.0% | |
| TAAACCCTGCATATGCCTTG+AGG | + | chr5_3:68798950-68798969 | None:intergenic | 45.0% | |
| GAAGTACACTATACCTGCTC+TGG | + | chr5_3:68799120-68799139 | None:intergenic | 45.0% | |
| GAAATAGTTCCTTGCGGCAA+TGG | + | chr5_3:68799340-68799359 | None:intergenic | 45.0% | |
| !! | AAAATTGGTGCTGACAGGGA+GGG | + | chr5_3:68799362-68799381 | None:intergenic | 45.0% |
| AACAGGCCCCTTCACAAAAT+TGG | + | chr5_3:68799377-68799396 | None:intergenic | 45.0% | |
| !! | ATATAACTAAATTTATATTA+TGG | + | chr5_3:68798666-68798685 | None:intergenic | 5.0% |
| ATTCGTGAACTCGCTCACGA+CGG | + | chr5_3:68796880-68796899 | None:intergenic | 50.0% | |
| GAGCGAGTTCACGAATTGCA+CGG | - | chr5_3:68796884-68796903 | Msa0827500:intron | 50.0% | |
| TCACGAATTGCACGGTGGTT+TGG | - | chr5_3:68796892-68796911 | Msa0827500:intron | 50.0% | |
| TGGAAACTCGTAGTCGGAAG+CGG | - | chr5_3:68796923-68796942 | Msa0827500:intron | 50.0% | |
| AGAAAGACGAGGACGTTTGG+TGG | + | chr5_3:68797004-68797023 | None:intergenic | 50.0% | |
| TGGTGTAGCAGTGGCTGTTA+CGG | + | chr5_3:68797064-68797083 | None:intergenic | 50.0% | |
| !! | CGTGTACGAGTATTGGTGGT+TGG | + | chr5_3:68797090-68797109 | None:intergenic | 50.0% |
| TTGTTCGAGTCCATAGGAGG+AGG | + | chr5_3:68797138-68797157 | None:intergenic | 50.0% | |
| CCCTTTCAGGATTCTTTCCG+CGG | + | chr5_3:68797185-68797204 | None:intergenic | 50.0% | |
| CCGCGGAAAGAATCCTGAAA+GGG | - | chr5_3:68797182-68797201 | Msa0827500:intron | 50.0% | |
| AGGAACACGATGTTAGGGCT+AGG | - | chr5_3:68797229-68797248 | Msa0827500:intron | 50.0% | |
| !! | TTGAAGCTGGTGCTGGTGAT+GGG | - | chr5_3:68797289-68797308 | Msa0827500:CDS | 50.0% |
| ! | GATGATAGTGACAGTGGCGT+TGG | - | chr5_3:68797318-68797337 | Msa0827500:CDS | 50.0% |
| TCTGCAAGCAGTGCACTACA+AGG | - | chr5_3:68797363-68797382 | Msa0827500:CDS | 50.0% | |
| CTGCAAGCAGTGCACTACAA+GGG | - | chr5_3:68797364-68797383 | Msa0827500:CDS | 50.0% | |
| !! | TCGAAAACTTGGTGCGGGTT+TGG | - | chr5_3:68797392-68797411 | Msa0827500:intron | 50.0% |
| CTTCATCTCATCAGAGTGGG+AGG | - | chr5_3:68797445-68797464 | Msa0827500:intron | 50.0% | |
| ! | GTTTGGGTTAAGGGCTGAAG+GGG | - | chr5_3:68797482-68797501 | Msa0827500:intron | 50.0% |
| TTAAGGGCTGAAGGGGAAGA+AGG | - | chr5_3:68797489-68797508 | Msa0827500:intron | 50.0% | |
| TCGTTTGTGCCAGTGCTTGT+TGG | - | chr5_3:68797594-68797613 | Msa0827500:CDS | 50.0% | |
| CGTTTGTGCCAGTGCTTGTT+GGG | - | chr5_3:68797595-68797614 | Msa0827500:CDS | 50.0% | |
| TTCAGCAACCCAACAAGCAC+TGG | + | chr5_3:68797606-68797625 | None:intergenic | 50.0% | |
| ! | TGTGCTGCTGTTGTGCACTA+TGG | - | chr5_3:68797702-68797721 | Msa0827500:intron | 50.0% |
| ! | TGGCATCATGGTACTGAAGG+AGG | + | chr5_3:68798512-68798531 | None:intergenic | 50.0% |
| ! | CCTTGGCATCATGGTACTGA+AGG | + | chr5_3:68798515-68798534 | None:intergenic | 50.0% |
| CCTTCAGTACCATGATGCCA+AGG | - | chr5_3:68798512-68798531 | Msa0827500:CDS | 50.0% | |
| ! | AACAAACAGAGGCATGCTCC+AGG | + | chr5_3:68798721-68798740 | None:intergenic | 50.0% |
| !! | TCTAACAGCAGTTCTGGAGG+TGG | - | chr5_3:68798833-68798852 | Msa0827500:CDS | 50.0% |
| CTTGACCTCAAGGCATATGC+AGG | - | chr5_3:68798942-68798961 | Msa0827500:CDS | 50.0% | |
| TCTGGTGGCCTACTTAATGC+AGG | + | chr5_3:68799102-68799121 | None:intergenic | 50.0% | |
| ATTAAGTAGGCCACCAGAGC+AGG | - | chr5_3:68799104-68799123 | Msa0827500:CDS | 50.0% | |
| GTACACTATACCTGCTCTGG+TGG | + | chr5_3:68799117-68799136 | None:intergenic | 50.0% | |
| GAGGGAGAAGCTCATTTGTC+AGG | + | chr5_3:68799318-68799337 | None:intergenic | 50.0% | |
| TAGTTCCTTGCGGCAATGGA+GGG | + | chr5_3:68799336-68799355 | None:intergenic | 50.0% | |
| ATAGTTCCTTGCGGCAATGG+AGG | + | chr5_3:68799337-68799356 | None:intergenic | 50.0% | |
| GGGAGGGAAATAGTTCCTTG+CGG | + | chr5_3:68799346-68799365 | None:intergenic | 50.0% | |
| !! | CAAAATTGGTGCTGACAGGG+AGG | + | chr5_3:68799363-68799382 | None:intergenic | 50.0% |
| GCGCAACAGGAAGACACAAA+TGG | - | chr5_3:68799424-68799443 | Msa0827500:five_prime_UTR | 50.0% | |
| TTCTCACGAGCCGATATCTC+AGG | + | chr5_3:68799457-68799476 | None:intergenic | 50.0% | |
| CGAGTTCACGAATTGCACGG+TGG | - | chr5_3:68796887-68796906 | Msa0827500:intron | 55.0% | |
| GGAAACTCGTAGTCGGAAGC+GGG | - | chr5_3:68796924-68796943 | Msa0827500:intron | 55.0% | |
| AGAAGATGAAGGGGCAGCTG+AGG | + | chr5_3:68796959-68796978 | None:intergenic | 55.0% | |
| TGTTACGGTGGTTGTTGCGG+CGG | + | chr5_3:68797049-68797068 | None:intergenic | 55.0% | |
| GGCTGTTACGGTGGTTGTTG+CGG | + | chr5_3:68797052-68797071 | None:intergenic | 55.0% | |
| TGTAGCAGTGGCTGTTACGG+TGG | + | chr5_3:68797061-68797080 | None:intergenic | 55.0% | |
| !! | CGAGTATTGGTGGTTGGCGT+TGG | + | chr5_3:68797084-68797103 | None:intergenic | 55.0% |
| !! | AGCGCGTGTACGAGTATTGG+TGG | + | chr5_3:68797094-68797113 | None:intergenic | 55.0% |
| ! | GGAAGCGCGTGTACGAGTAT+TGG | + | chr5_3:68797097-68797116 | None:intergenic | 55.0% |
| GCCGCGGAAAGAATCCTGAA+AGG | - | chr5_3:68797181-68797200 | Msa0827500:intron | 55.0% | |
| !! | GTTGAAGCTGGTGCTGGTGA+TGG | - | chr5_3:68797288-68797307 | Msa0827500:CDS | 55.0% |
| !! | TGAAGCTGGTGCTGGTGATG+GGG | - | chr5_3:68797290-68797309 | Msa0827500:CDS | 55.0% |
| ACAACAGCAGCACACGACGA+AGG | + | chr5_3:68797696-68797715 | None:intergenic | 55.0% | |
| AACTCGTAGTCGGAAGCGGG+CGG | - | chr5_3:68796927-68796946 | Msa0827500:intron | 60.0% | |
| !! | GGTTGGCGTTGGTGTAGCAG+TGG | + | chr5_3:68797073-68797092 | None:intergenic | 60.0% |
| !! | CAGCAGTTCTGGAGGTGGAC+AGG | - | chr5_3:68798838-68798857 | Msa0827500:CDS | 60.0% |
| TGTGCAAGCGGGTCTCCTCT+TGG | - | chr5_3:68798988-68799007 | Msa0827500:CDS | 60.0% | |
| CTTCTCCCTCCATTGCCGCA+AGG | - | chr5_3:68799328-68799347 | Msa0827500:five_prime_UTR | 60.0% | |
| TGTTGCGCAGAACTGCCAGC+AGG | + | chr5_3:68799412-68799431 | None:intergenic | 60.0% | |
| TGCTGGCAGTTCTGCGCAAC+AGG | - | chr5_3:68799411-68799430 | Msa0827500:five_prime_UTR | 60.0% | |
| GCAGGCAGTTGGGTGCTCCT+GGG | + | chr5_3:68798212-68798231 | None:intergenic | 65.0% | |
| CGGCTCGTAGGCAGGCAGTT+GGG | + | chr5_3:68798222-68798241 | None:intergenic | 65.0% | |
| CCAACTGCCTGCCTACGAGC+CGG | - | chr5_3:68798220-68798239 | Msa0827500:intron | 65.0% | |
| CAACTGCCTGCCTACGAGCC+GGG | - | chr5_3:68798221-68798240 | Msa0827500:intron | 65.0% | |
| AACTGCCTGCCTACGAGCCG+GGG | - | chr5_3:68798222-68798241 | Msa0827500:intron | 65.0% | |
| CAGCACAGCCATGAGAGCCC+CGG | + | chr5_3:68798242-68798261 | None:intergenic | 65.0% | |
| TCGTAGTCGGAAGCGGGCGG+AGG | - | chr5_3:68796930-68796949 | Msa0827500:intron | 70.0% | |
| GGTGGTTGTTGCGGCGGCAG+CGG | + | chr5_3:68797043-68797062 | None:intergenic | 70.0% | |
| GGCAGGCAGTTGGGTGCTCC+TGG | + | chr5_3:68798213-68798232 | None:intergenic | 70.0% | |
| ! | CCGGCTCGTAGGCAGGCAGT+TGG | + | chr5_3:68798223-68798242 | None:intergenic | 70.0% |
| ! | CCATGAGAGCCCCGGCTCGT+AGG | + | chr5_3:68798234-68798253 | None:intergenic | 70.0% |
| CCTACGAGCCGGGGCTCTCA+TGG | - | chr5_3:68798231-68798250 | Msa0827500:intron | 70.0% | |
| TGTTGCGGCGGCAGCGGTGG+AGG | + | chr5_3:68797037-68797056 | None:intergenic | 75.0% | |
| GGTTGTTGCGGCGGCAGCGG+TGG | + | chr5_3:68797040-68797059 | None:intergenic | 75.0% | |
| ! | TCTTCCGGTTCGCGGCGCCG+CGG | - | chr5_3:68797165-68797184 | Msa0827500:intron | 75.0% |
| CTTTCCGCGGCGCCGCGAAC+CGG | + | chr5_3:68797172-68797191 | None:intergenic | 75.0% | |
| ! | GAGAGCCCCGGCTCGTAGGC+AGG | + | chr5_3:68798230-68798249 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 68796636 | 68799489 | 68796636 | ID=Msa0827500;Name=Msa0827500 |
| chr5_3 | mRNA | 68796636 | 68799489 | 68796636 | ID=Msa0827500-mRNA-1;Parent=Msa0827500;Name=Msa0827500-mRNA-1;_AED=0.09;_eAED=0.09;_QI=286|1|0.83|1|1|1|6|0|538 |
| chr5_3 | exon | 68796636 | 68796827 | 68796636 | ID=Msa0827500-mRNA-1:exon:21636;Parent=Msa0827500-mRNA-1 |
| chr5_3 | exon | 68797000 | 68797161 | 68797000 | ID=Msa0827500-mRNA-1:exon:21635;Parent=Msa0827500-mRNA-1 |
| chr5_3 | exon | 68797239 | 68797409 | 68797239 | ID=Msa0827500-mRNA-1:exon:21634;Parent=Msa0827500-mRNA-1 |
| chr5_3 | exon | 68797592 | 68797708 | 68797592 | ID=Msa0827500-mRNA-1:exon:21633;Parent=Msa0827500-mRNA-1 |
| chr5_3 | exon | 68797831 | 68797941 | 68797831 | ID=Msa0827500-mRNA-1:exon:21632;Parent=Msa0827500-mRNA-1 |
| chr5_3 | exon | 68798340 | 68799489 | 68798340 | ID=Msa0827500-mRNA-1:exon:21631;Parent=Msa0827500-mRNA-1 |
| chr5_3 | five_prime_UTR | 68799204 | 68799489 | 68799204 | ID=Msa0827500-mRNA-1:five_prime_utr;Parent=Msa0827500-mRNA-1 |
| chr5_3 | CDS | 68798340 | 68799203 | 68798340 | ID=Msa0827500-mRNA-1:cds;Parent=Msa0827500-mRNA-1 |
| chr5_3 | CDS | 68797831 | 68797941 | 68797831 | ID=Msa0827500-mRNA-1:cds;Parent=Msa0827500-mRNA-1 |
| chr5_3 | CDS | 68797592 | 68797708 | 68797592 | ID=Msa0827500-mRNA-1:cds;Parent=Msa0827500-mRNA-1 |
| chr5_3 | CDS | 68797239 | 68797409 | 68797239 | ID=Msa0827500-mRNA-1:cds;Parent=Msa0827500-mRNA-1 |
| chr5_3 | CDS | 68797000 | 68797161 | 68797000 | ID=Msa0827500-mRNA-1:cds;Parent=Msa0827500-mRNA-1 |
| chr5_3 | CDS | 68796636 | 68796827 | 68796636 | ID=Msa0827500-mRNA-1:cds;Parent=Msa0827500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
