Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149010 | GAU11198.1 | 80.075 | 266 | 53 | 0 | 9 | 274 | 18 | 283 | 7.53e-158 | 452 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149010 | sp|Q9FPT1|UBP12_ARATH | 32.667 | 150 | 92 | 4 | 18 | 166 | 42 | 183 | 8.52e-17 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149010 | A0A2K3N5Y4 | 82.558 | 258 | 44 | 1 | 8 | 264 | 1 | 258 | 6.98e-156 | 446 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0627090 | Msa1149010 | 0.848463 | 6.030365e-60 | -8.615850e-47 |
| Msa0665160 | Msa1149010 | 0.831304 | 1.800886e-55 | -8.615850e-47 |
| Msa1149000 | Msa1149010 | 0.973380 | 2.489612e-136 | -8.615850e-47 |
| Msa0530390 | Msa1149010 | 0.842136 | 3.109252e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149010 | MtrunA17_Chr4g0069161 | 41.313 | 259 | 146 | 3 | 26 | 278 | 14 | 272 | 7.82e-58 | 188 |
| Msa1149010 | MtrunA17_Chr8g0334821 | 35.667 | 300 | 164 | 8 | 9 | 279 | 5 | 304 | 6.68e-52 | 177 |
| Msa1149010 | MtrunA17_Chr1g0166871 | 29.078 | 141 | 94 | 3 | 30 | 170 | 12 | 146 | 2.90e-20 | 89.0 |
| Msa1149010 | MtrunA17_Chr5g0439971 | 32.353 | 136 | 84 | 3 | 29 | 164 | 59 | 186 | 1.77e-19 | 89.0 |
| Msa1149010 | MtrunA17_Chr5g0443161 | 32.836 | 134 | 83 | 3 | 29 | 162 | 31 | 157 | 1.07e-18 | 84.0 |
| Msa1149010 | MtrunA17_Chr3g0119031 | 30.986 | 142 | 90 | 3 | 28 | 169 | 53 | 186 | 2.93e-18 | 85.5 |
| Msa1149010 | MtrunA17_Chr1g0170261 | 29.697 | 165 | 101 | 4 | 2 | 166 | 36 | 185 | 1.55e-17 | 83.2 |
| Msa1149010 | MtrunA17_Chr5g0443194 | 35.878 | 131 | 76 | 4 | 32 | 162 | 20 | 142 | 2.62e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149010 | AT3G17380.1 | 44.403 | 268 | 139 | 5 | 27 | 290 | 17 | 278 | 2.47e-72 | 226 |
| Msa1149010 | AT3G20370.1 | 37.647 | 255 | 150 | 7 | 18 | 266 | 73 | 324 | 1.42e-45 | 159 |
| Msa1149010 | AT3G20370.2 | 37.647 | 255 | 150 | 7 | 18 | 266 | 51 | 302 | 1.62e-45 | 158 |
| Msa1149010 | AT1G58270.1 | 34.524 | 252 | 150 | 5 | 25 | 268 | 90 | 334 | 3.59e-39 | 142 |
| Msa1149010 | AT3G28220.1 | 36.145 | 249 | 151 | 7 | 25 | 268 | 76 | 321 | 8.54e-39 | 140 |
| Msa1149010 | AT3G22080.1 | 32.000 | 275 | 179 | 6 | 13 | 279 | 2 | 276 | 4.64e-38 | 137 |
| Msa1149010 | AT2G15710.1 | 35.865 | 237 | 145 | 5 | 25 | 257 | 94 | 327 | 2.53e-36 | 134 |
| Msa1149010 | AT5G26280.1 | 34.025 | 241 | 156 | 3 | 25 | 263 | 55 | 294 | 4.58e-35 | 130 |
| Msa1149010 | AT5G26280.3 | 34.025 | 241 | 156 | 3 | 25 | 263 | 74 | 313 | 5.60e-35 | 130 |
| Msa1149010 | AT3G20360.1 | 31.502 | 273 | 175 | 7 | 17 | 279 | 54 | 324 | 5.92e-35 | 130 |
| Msa1149010 | AT5G26260.1 | 34.101 | 217 | 141 | 2 | 17 | 232 | 48 | 263 | 6.38e-35 | 130 |
| Msa1149010 | AT5G26320.1 | 32.510 | 243 | 159 | 4 | 25 | 263 | 55 | 296 | 1.38e-34 | 129 |
| Msa1149010 | AT5G26290.1 | 34.583 | 240 | 148 | 4 | 25 | 262 | 48 | 280 | 1.79e-34 | 128 |
| Msa1149010 | AT2G04170.5 | 34.286 | 245 | 158 | 3 | 25 | 267 | 125 | 368 | 7.93e-33 | 124 |
| Msa1149010 | AT2G04170.4 | 34.025 | 241 | 156 | 3 | 25 | 263 | 3 | 242 | 4.60e-32 | 121 |
| Msa1149010 | AT2G04170.3 | 34.025 | 241 | 156 | 3 | 25 | 263 | 3 | 242 | 4.60e-32 | 121 |
| Msa1149010 | AT2G04170.6 | 34.025 | 241 | 156 | 3 | 25 | 263 | 85 | 324 | 2.49e-31 | 120 |
| Msa1149010 | AT4G09770.3 | 31.020 | 245 | 158 | 7 | 25 | 265 | 5 | 242 | 2.92e-31 | 117 |
| Msa1149010 | AT4G09770.2 | 30.620 | 258 | 165 | 8 | 25 | 278 | 5 | 252 | 3.66e-31 | 118 |
| Msa1149010 | AT4G09770.1 | 30.620 | 258 | 165 | 8 | 25 | 278 | 5 | 252 | 3.66e-31 | 118 |
| Msa1149010 | AT2G04170.2 | 34.025 | 241 | 156 | 3 | 25 | 263 | 125 | 364 | 4.02e-31 | 120 |
| Msa1149010 | AT2G04170.1 | 34.025 | 241 | 156 | 3 | 25 | 263 | 125 | 364 | 4.02e-31 | 120 |
| Msa1149010 | AT4G09770.4 | 30.620 | 258 | 165 | 8 | 25 | 278 | 31 | 278 | 5.63e-31 | 119 |
| Msa1149010 | AT4G09770.5 | 31.020 | 245 | 158 | 7 | 25 | 265 | 31 | 268 | 6.00e-31 | 117 |
| Msa1149010 | AT5G26300.1 | 31.225 | 253 | 170 | 4 | 25 | 275 | 55 | 305 | 1.35e-30 | 118 |
| Msa1149010 | AT3G20380.1 | 30.992 | 242 | 159 | 3 | 26 | 263 | 83 | 320 | 3.30e-30 | 117 |
| Msa1149010 | AT3G22085.1 | 29.520 | 271 | 160 | 9 | 16 | 279 | 5 | 251 | 2.31e-29 | 114 |
| Msa1149010 | AT2G04190.1 | 33.333 | 210 | 137 | 3 | 25 | 232 | 115 | 323 | 9.33e-28 | 111 |
| Msa1149010 | AT4G09780.2 | 28.519 | 270 | 185 | 6 | 4 | 270 | 37 | 301 | 1.62e-27 | 111 |
| Msa1149010 | AT1G65150.2 | 30.833 | 240 | 151 | 5 | 25 | 262 | 15 | 241 | 1.69e-27 | 108 |
| Msa1149010 | AT1G65150.1 | 30.833 | 240 | 151 | 5 | 25 | 262 | 15 | 241 | 1.69e-27 | 108 |
| Msa1149010 | AT4G09780.1 | 31.651 | 218 | 144 | 4 | 4 | 219 | 37 | 251 | 2.61e-27 | 110 |
| Msa1149010 | AT4G00780.1 | 31.579 | 247 | 148 | 9 | 32 | 270 | 22 | 255 | 2.56e-26 | 105 |
| Msa1149010 | AT4G01390.1 | 31.667 | 240 | 146 | 7 | 32 | 264 | 22 | 250 | 5.13e-26 | 105 |
| Msa1149010 | AT2G04170.7 | 35.233 | 193 | 123 | 2 | 25 | 216 | 125 | 316 | 5.29e-26 | 105 |
| Msa1149010 | AT5G26280.2 | 30.962 | 239 | 139 | 4 | 25 | 261 | 55 | 269 | 2.56e-24 | 100 |
| Msa1149010 | AT1G69660.1 | 31.383 | 188 | 126 | 3 | 97 | 281 | 8 | 195 | 9.58e-24 | 97.4 |
| Msa1149010 | AT1G65050.2 | 34.375 | 128 | 76 | 2 | 25 | 152 | 15 | 134 | 6.70e-20 | 85.1 |
| Msa1149010 | AT1G65050.1 | 34.375 | 128 | 76 | 2 | 25 | 152 | 15 | 134 | 6.70e-20 | 85.1 |
| Msa1149010 | AT1G69650.1 | 27.778 | 288 | 160 | 11 | 8 | 279 | 1 | 256 | 9.46e-20 | 87.8 |
| Msa1149010 | AT3G46190.1 | 28.881 | 277 | 152 | 10 | 25 | 294 | 28 | 266 | 6.91e-19 | 85.5 |
| Msa1149010 | AT3G46190.2 | 28.881 | 277 | 152 | 10 | 25 | 294 | 48 | 286 | 1.66e-18 | 84.7 |
| Msa1149010 | AT1G65370.1 | 29.787 | 188 | 111 | 5 | 82 | 261 | 1 | 175 | 3.15e-18 | 82.4 |
| Msa1149010 | AT5G06600.1 | 32.667 | 150 | 92 | 4 | 18 | 166 | 42 | 183 | 8.66e-18 | 84.3 |
| Msa1149010 | AT5G06600.2 | 32.667 | 150 | 92 | 4 | 18 | 166 | 41 | 182 | 9.24e-18 | 84.3 |
| Msa1149010 | AT5G06600.3 | 32.026 | 153 | 95 | 4 | 18 | 169 | 42 | 186 | 8.15e-17 | 81.3 |
| Msa1149010 | AT3G11910.3 | 31.429 | 140 | 87 | 4 | 28 | 166 | 51 | 182 | 2.29e-16 | 80.1 |
| Msa1149010 | AT3G11910.1 | 31.429 | 140 | 87 | 4 | 28 | 166 | 51 | 182 | 2.29e-16 | 80.1 |
| Msa1149010 | AT3G11910.4 | 27.647 | 170 | 114 | 4 | 1 | 169 | 23 | 184 | 9.25e-16 | 78.2 |
| Msa1149010 | AT3G11910.2 | 27.647 | 170 | 114 | 4 | 1 | 169 | 23 | 184 | 9.25e-16 | 78.2 |
| Msa1149010 | AT2G32870.1 | 26.894 | 264 | 163 | 9 | 22 | 270 | 117 | 365 | 7.41e-15 | 75.1 |
| Msa1149010 | AT2G32870.2 | 27.237 | 257 | 157 | 9 | 22 | 263 | 117 | 358 | 2.07e-13 | 70.5 |
| Msa1149010 | AT2G32880.1 | 25.379 | 264 | 169 | 9 | 22 | 270 | 17 | 267 | 8.33e-13 | 68.2 |
| Msa1149010 | AT2G32880.2 | 25.292 | 257 | 164 | 9 | 22 | 263 | 17 | 260 | 2.12e-11 | 63.9 |
Find 74 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCAATAGGTAATGAAAT+TGG | 0.139287 | 7_4:-29698511 | None:intergenic |
| TGGCCACGTTTCTATTTATT+TGG | 0.172284 | 7_4:+29698477 | Msa1149010:CDS |
| CAACATGTTTCCCACATATT+TGG | 0.189759 | 7_4:-29699453 | None:intergenic |
| GTCCTTCTCTTTGCTTTCTA+AGG | 0.213307 | 7_4:+29698193 | Msa1149010:CDS |
| GTGTCAATGTTGATGAAATT+TGG | 0.232113 | 7_4:-29698997 | None:intergenic |
| GGATAAGCAATCGCCTTTAT+TGG | 0.263509 | 7_4:-29699097 | None:intergenic |
| TTTCCCACATATTTGGTCTT+TGG | 0.268483 | 7_4:-29699446 | None:intergenic |
| AATAGTGACAGGATTTATTA+TGG | 0.278861 | 7_4:-29699118 | None:intergenic |
| CGACTCCATTGGGGTATAAA+AGG | 0.287642 | 7_4:-29699327 | None:intergenic |
| GAAAGTGTAAGTCCATATTT+AGG | 0.297132 | 7_4:+29699479 | Msa1149010:CDS |
| CGCAGAAGATAACCTAAATA+TGG | 0.301652 | 7_4:-29699491 | None:intergenic |
| TTTATATGAATCACCTTTCA+TGG | 0.305529 | 7_4:-29697867 | None:intergenic |
| TTCTATTTATTTGGCAATCA+TGG | 0.321583 | 7_4:+29698486 | Msa1149010:CDS |
| TGGGTACTAACACATAATTT+TGG | 0.338609 | 7_4:-29699750 | None:intergenic |
| CAATTTCATTACCTATTGAT+TGG | 0.338977 | 7_4:+29698512 | Msa1149010:CDS |
| ATATGCTGAAAAGTTTATAA+TGG | 0.340449 | 7_4:-29698545 | None:intergenic |
| TTTCCCTCAACGACTCCATT+GGG | 0.382967 | 7_4:-29699337 | None:intergenic |
| TTGTAGCTGGAGACTATAAA+TGG | 0.384295 | 7_4:+29699205 | Msa1149010:CDS |
| AGCTTGTCTATATACCCATC+TGG | 0.388009 | 7_4:+29698433 | Msa1149010:CDS |
| ACGCGAGGAGTGTTCGTGAT+AGG | 0.407207 | 7_4:+29699672 | Msa1149010:three_prime_UTR |
| TCCTCGCGTTATGTGTGTTT+CGG | 0.408181 | 7_4:-29699658 | None:intergenic |
| CTTTCCCTCAACGACTCCAT+TGG | 0.417745 | 7_4:-29699338 | None:intergenic |
| AATTTCATTACCTATTGATT+GGG | 0.420880 | 7_4:+29698513 | Msa1149010:CDS |
| TTCCTCTCTGTGTTCCCAGA+TGG | 0.430780 | 7_4:-29698448 | None:intergenic |
| AATCAATAGGTAATGAAATT+GGG | 0.431396 | 7_4:-29698510 | None:intergenic |
| CCCTACAAAAGGATATTTGT+TGG | 0.450408 | 7_4:+29699029 | Msa1149010:CDS |
| TCCTCTCTGTGTTCCCAGAT+GGG | 0.451582 | 7_4:-29698447 | None:intergenic |
| GCATTGATCTCCCAATCAAT+AGG | 0.467061 | 7_4:-29698523 | None:intergenic |
| ACCTCCAGCTTCAAACTCTT+CGG | 0.467371 | 7_4:-29698237 | None:intergenic |
| TACCCCAATGGAGTCGTTGA+GGG | 0.484655 | 7_4:+29699334 | Msa1149010:CDS |
| CAATGGAGTCGTTGAGGGAA+AGG | 0.485272 | 7_4:+29699339 | Msa1149010:CDS |
| TTTGCAAAATTTCCAGCTGT+GGG | 0.488078 | 7_4:-29699142 | None:intergenic |
| ATTTGCAAAATTTCCAGCTG+TGG | 0.490568 | 7_4:-29699143 | None:intergenic |
| CTGTCACTATTTCCCACAGC+TGG | 0.497615 | 7_4:+29699130 | Msa1149010:CDS |
| GTTGTGAAGACTGCCAATAA+AGG | 0.497899 | 7_4:+29699084 | Msa1149010:CDS |
| CGCGCCAAAGACCAAATATG+TGG | 0.505810 | 7_4:+29699442 | Msa1149010:CDS |
| GAGTCGGAATCCTTTGTAGC+TGG | 0.507263 | 7_4:+29699192 | Msa1149010:CDS |
| TTGAAGCTGGAGGTTACAAA+TGG | 0.507558 | 7_4:+29698246 | Msa1149010:CDS |
| TAACTAGTTCTTCATAGCAA+TGG | 0.507939 | 7_4:+29697787 | Msa1149010:exon |
| CAGCTGTGGGAAATAGTGAC+AGG | 0.517244 | 7_4:-29699129 | None:intergenic |
| AACATGCAGATGCATCTGTT+AGG | 0.533883 | 7_4:+29698941 | Msa1149010:intron |
| TGAATCACCTTTCATGGGTG+TGG | 0.537773 | 7_4:-29697861 | None:intergenic |
| GTCTCCGAAGAGTTTGAAGC+TGG | 0.538769 | 7_4:+29698233 | Msa1149010:CDS |
| TTATATGAATCACCTTTCAT+GGG | 0.539533 | 7_4:-29697866 | None:intergenic |
| ACATTCAAAGACCCTACAAA+AGG | 0.543496 | 7_4:+29699018 | Msa1149010:CDS |
| AATGGAGTCGTTGAGGGAAA+GGG | 0.546147 | 7_4:+29699340 | Msa1149010:CDS |
| TTTATAGTCTCCAGCTACAA+AGG | 0.550212 | 7_4:-29699202 | None:intergenic |
| AGGTTATCTTCTGCGAAGCA+TGG | 0.555039 | 7_4:+29699499 | Msa1149010:CDS |
| TATACGTGTCTTTGTCGTGT+CGG | 0.559809 | 7_4:+29699608 | Msa1149010:three_prime_UTR |
| TCATGTCCTGAAAACAGAGT+GGG | 0.562047 | 7_4:+29698969 | Msa1149010:CDS |
| TTGAATGTGTAATGACTTGG+CGG | 0.569734 | 7_4:-29698164 | None:intergenic |
| TCTCAAATTATTAGTGGCGG+CGG | 0.574973 | 7_4:-29699563 | None:intergenic |
| GGCCTTAGAAAGCAAAGAGA+AGG | 0.575991 | 7_4:-29698195 | None:intergenic |
| ATCTGACACTAAAATTCTCG+TGG | 0.589622 | 7_4:+29699408 | Msa1149010:CDS |
| ACAAACAGTATTCATATCCA+TGG | 0.591072 | 7_4:-29697825 | None:intergenic |
| ATGGATACGAACACAGACAT+TGG | 0.595399 | 7_4:+29699518 | Msa1149010:CDS |
| ATACCCCAATGGAGTCGTTG+AGG | 0.601714 | 7_4:+29699333 | Msa1149010:CDS |
| TCCGAAGAGTTTGAAGCTGG+AGG | 0.602578 | 7_4:+29698236 | Msa1149010:CDS |
| GATGAATACGTTACAACTCA+AGG | 0.603967 | 7_4:+29698580 | Msa1149010:CDS |
| GCTTGTCTATATACCCATCT+GGG | 0.606052 | 7_4:+29698434 | Msa1149010:CDS |
| AACTTATAGGGAATCAGTGA+AGG | 0.610016 | 7_4:+29697684 | None:intergenic |
| TTCCCTCAACGACTCCATTG+GGG | 0.610483 | 7_4:-29699336 | None:intergenic |
| TTGTCTACCACACCCATGAA+AGG | 0.611440 | 7_4:+29697854 | Msa1149010:CDS |
| TCTGGGAACACAGAGAGGAA+TGG | 0.613084 | 7_4:+29698451 | Msa1149010:CDS |
| GGTTACTGTATGTTCTACCA+TGG | 0.616125 | 7_4:+29697808 | Msa1149010:CDS |
| TTCATGTCCTGAAAACAGAG+TGG | 0.637299 | 7_4:+29698968 | Msa1149010:CDS |
| AAATTTAGACAAGTACGAGT+CGG | 0.642137 | 7_4:+29699176 | Msa1149010:CDS |
| ACCCATCTGGGAACACAGAG+AGG | 0.643127 | 7_4:+29698446 | Msa1149010:CDS |
| CATGTCCTGAAAACAGAGTG+GGG | 0.661266 | 7_4:+29698970 | Msa1149010:CDS |
| ATGGGTGTGGTAGACAACAA+TGG | 0.666956 | 7_4:-29697848 | None:intergenic |
| GCGCCAAAGACCAAATATGT+GGG | 0.671293 | 7_4:+29699443 | Msa1149010:CDS |
| ACCGAAACACACATAACGCG+AGG | 0.674205 | 7_4:+29699657 | Msa1149010:three_prime_UTR |
| AACACAGAGAGGAATGGACA+TGG | 0.678970 | 7_4:+29698457 | Msa1149010:CDS |
| TTGCCAAATAAATAGAAACG+TGG | 0.730686 | 7_4:-29698480 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAACTAATTAATGAA+GGG | - | chr7_4:29697753-29697772 | None:intergenic | 10.0% |
| !! | TAAAAATAACTAATTAATGA+AGG | - | chr7_4:29697754-29697773 | None:intergenic | 10.0% |
| !!! | TAATTAGTTATTTTTACTTA+AGG | + | chr7_4:29697758-29697777 | Msa1149010:five_prime_UTR | 10.0% |
| !!! | AATTAGTTATTTTTACTTAA+GGG | + | chr7_4:29697759-29697778 | Msa1149010:five_prime_UTR | 10.0% |
| !!! | TATGTATGATATAAATTTTA+AGG | + | chr7_4:29698655-29698674 | Msa1149010:intron | 10.0% |
| !!! | TAATTTTTTAATATCTTTTC+AGG | + | chr7_4:29698861-29698880 | Msa1149010:intron | 10.0% |
| !! | AAAAATAACTAATTAATGAA+GGG | - | chr7_4:29697753-29697772 | None:intergenic | 10.0% |
| !! | TAAAAATAACTAATTAATGA+AGG | - | chr7_4:29697754-29697773 | None:intergenic | 10.0% |
| !!! | TAATTAGTTATTTTTACTTA+AGG | + | chr7_4:29697758-29697777 | Msa1149010:five_prime_UTR | 10.0% |
| !!! | AATTAGTTATTTTTACTTAA+GGG | + | chr7_4:29697759-29697778 | Msa1149010:five_prime_UTR | 10.0% |
| !!! | TATGTATGATATAAATTTTA+AGG | + | chr7_4:29698655-29698674 | Msa1149010:intron | 10.0% |
| !!! | TAATTTTTTAATATCTTTTC+AGG | + | chr7_4:29698861-29698880 | Msa1149010:intron | 10.0% |
| !!! | TTTATATTGATATCTTTTAC+AGG | + | chr7_4:29698131-29698150 | Msa1149010:intron | 15.0% |
| !!! | TATGATATAAATTTTAAGGT+TGG | + | chr7_4:29698659-29698678 | Msa1149010:intron | 15.0% |
| !! | TTTATAAGTAGTATAAGATA+AGG | - | chr7_4:29698911-29698930 | None:intergenic | 15.0% |
| !! | AGCTAAAAATAATGAAATAT+GGG | - | chr7_4:29699368-29699387 | None:intergenic | 15.0% |
| !!! | TTTATATTGATATCTTTTAC+AGG | + | chr7_4:29698131-29698150 | Msa1149010:intron | 15.0% |
| !!! | TATGATATAAATTTTAAGGT+TGG | + | chr7_4:29698659-29698678 | Msa1149010:intron | 15.0% |
| !! | TTTATAAGTAGTATAAGATA+AGG | - | chr7_4:29698911-29698930 | None:intergenic | 15.0% |
| !! | AGCTAAAAATAATGAAATAT+GGG | - | chr7_4:29699368-29699387 | None:intergenic | 15.0% |
| !! | AGATTAGATACATTAAAAGA+AGG | + | chr7_4:29698068-29698087 | Msa1149010:intron | 20.0% |
| !! | AATGGTATGTAAATGTATTT+AGG | + | chr7_4:29698264-29698283 | Msa1149010:intron | 20.0% |
| !! | AATCAATAGGTAATGAAATT+GGG | - | chr7_4:29698513-29698532 | None:intergenic | 20.0% |
| !!! | AATTTCATTACCTATTGATT+GGG | + | chr7_4:29698513-29698532 | Msa1149010:CDS | 20.0% |
| !! | ATATGCTGAAAAGTTTATAA+TGG | - | chr7_4:29698548-29698567 | None:intergenic | 20.0% |
| !! | ATGATATTTAATCACTAACT+TGG | - | chr7_4:29698777-29698796 | None:intergenic | 20.0% |
| !! | GAGCTAAAAATAATGAAATA+TGG | - | chr7_4:29699369-29699388 | None:intergenic | 20.0% |
| !!! | TATTTCATTATTTTTAGCTC+TGG | + | chr7_4:29699369-29699388 | Msa1149010:CDS | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+TGG | - | chr7_4:29699572-29699591 | None:intergenic | 20.0% |
| !! | AAAAATTAAGAGATTATCAC+AGG | - | chr7_4:29699718-29699737 | None:intergenic | 20.0% |
| !! | AGATTAGATACATTAAAAGA+AGG | + | chr7_4:29698068-29698087 | Msa1149010:intron | 20.0% |
| !! | AATGGTATGTAAATGTATTT+AGG | + | chr7_4:29698264-29698283 | Msa1149010:intron | 20.0% |
| !! | AATCAATAGGTAATGAAATT+GGG | - | chr7_4:29698513-29698532 | None:intergenic | 20.0% |
| !!! | AATTTCATTACCTATTGATT+GGG | + | chr7_4:29698513-29698532 | Msa1149010:CDS | 20.0% |
| !! | ATATGCTGAAAAGTTTATAA+TGG | - | chr7_4:29698548-29698567 | None:intergenic | 20.0% |
| !! | ATGATATTTAATCACTAACT+TGG | - | chr7_4:29698777-29698796 | None:intergenic | 20.0% |
| !! | GAGCTAAAAATAATGAAATA+TGG | - | chr7_4:29699369-29699388 | None:intergenic | 20.0% |
| !!! | TATTTCATTATTTTTAGCTC+TGG | + | chr7_4:29699369-29699388 | Msa1149010:CDS | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+TGG | - | chr7_4:29699572-29699591 | None:intergenic | 20.0% |
| !! | AAAAATTAAGAGATTATCAC+AGG | - | chr7_4:29699718-29699737 | None:intergenic | 20.0% |
| !!! | AATTAATGAAGGGTTTTATC+TGG | - | chr7_4:29697743-29697762 | None:intergenic | 25.0% |
| ! | TTATATGAATCACCTTTCAT+GGG | - | chr7_4:29697869-29697888 | None:intergenic | 25.0% |
| ! | TTTATATGAATCACCTTTCA+TGG | - | chr7_4:29697870-29697889 | None:intergenic | 25.0% |
| ! | TGATTCATATAAACAACAGT+TGG | + | chr7_4:29697877-29697896 | Msa1149010:intron | 25.0% |
| !! | CTTTTCCGATTTAGTATTTA+GGG | - | chr7_4:29698021-29698040 | None:intergenic | 25.0% |
| !! | ACTTTTCCGATTTAGTATTT+AGG | - | chr7_4:29698022-29698041 | None:intergenic | 25.0% |
| ! | TTAGATACATTAAAAGAAGG+TGG | + | chr7_4:29698071-29698090 | Msa1149010:intron | 25.0% |
| !! | TATTGATATCTTTTACAGGA+AGG | + | chr7_4:29698135-29698154 | Msa1149010:intron | 25.0% |
| !! | ATTTTGAATGTGTAATGACT+TGG | - | chr7_4:29698170-29698189 | None:intergenic | 25.0% |
| ! | TGTATTTAGGCCTTAAATAA+TGG | + | chr7_4:29698277-29698296 | Msa1149010:intron | 25.0% |
| ! | TTCTATTTATTTGGCAATCA+TGG | + | chr7_4:29698486-29698505 | Msa1149010:CDS | 25.0% |
| ! | CAATCAATAGGTAATGAAAT+TGG | - | chr7_4:29698514-29698533 | None:intergenic | 25.0% |
| ! | CAATTTCATTACCTATTGAT+TGG | + | chr7_4:29698512-29698531 | Msa1149010:CDS | 25.0% |
| ! | GTTATATATTCTGTTAGGTT+TGG | + | chr7_4:29698681-29698700 | Msa1149010:intron | 25.0% |
| !!! | TTGACATGAGCTATTTTATA+GGG | + | chr7_4:29698816-29698835 | Msa1149010:intron | 25.0% |
| !! | TTGGATGATAATTGTGTTTT+TGG | + | chr7_4:29699048-29699067 | Msa1149010:CDS | 25.0% |
| ! | AATAGTGACAGGATTTATTA+TGG | - | chr7_4:29699121-29699140 | None:intergenic | 25.0% |
| !! | GTAACAAATTTTATGTTCTC+TGG | + | chr7_4:29699281-29699300 | Msa1149010:intron | 25.0% |
| !!! | TCTGGCTATTTTTTTTTAAC+AGG | + | chr7_4:29699299-29699318 | Msa1149010:intron | 25.0% |
| !! | TTTTCTCAAATTATTAGTGG+CGG | - | chr7_4:29699569-29699588 | None:intergenic | 25.0% |
| !!! | AATTAATGAAGGGTTTTATC+TGG | - | chr7_4:29697743-29697762 | None:intergenic | 25.0% |
| ! | TTATATGAATCACCTTTCAT+GGG | - | chr7_4:29697869-29697888 | None:intergenic | 25.0% |
| ! | TTTATATGAATCACCTTTCA+TGG | - | chr7_4:29697870-29697889 | None:intergenic | 25.0% |
| ! | TGATTCATATAAACAACAGT+TGG | + | chr7_4:29697877-29697896 | Msa1149010:intron | 25.0% |
| !! | CTTTTCCGATTTAGTATTTA+GGG | - | chr7_4:29698021-29698040 | None:intergenic | 25.0% |
| !! | ACTTTTCCGATTTAGTATTT+AGG | - | chr7_4:29698022-29698041 | None:intergenic | 25.0% |
| ! | TTAGATACATTAAAAGAAGG+TGG | + | chr7_4:29698071-29698090 | Msa1149010:intron | 25.0% |
| !! | TATTGATATCTTTTACAGGA+AGG | + | chr7_4:29698135-29698154 | Msa1149010:intron | 25.0% |
| !! | ATTTTGAATGTGTAATGACT+TGG | - | chr7_4:29698170-29698189 | None:intergenic | 25.0% |
| ! | TGTATTTAGGCCTTAAATAA+TGG | + | chr7_4:29698277-29698296 | Msa1149010:intron | 25.0% |
| ! | TTCTATTTATTTGGCAATCA+TGG | + | chr7_4:29698486-29698505 | Msa1149010:CDS | 25.0% |
| ! | CAATCAATAGGTAATGAAAT+TGG | - | chr7_4:29698514-29698533 | None:intergenic | 25.0% |
| ! | CAATTTCATTACCTATTGAT+TGG | + | chr7_4:29698512-29698531 | Msa1149010:CDS | 25.0% |
| ! | GTTATATATTCTGTTAGGTT+TGG | + | chr7_4:29698681-29698700 | Msa1149010:intron | 25.0% |
| !!! | TTGACATGAGCTATTTTATA+GGG | + | chr7_4:29698816-29698835 | Msa1149010:intron | 25.0% |
| !! | TTGGATGATAATTGTGTTTT+TGG | + | chr7_4:29699048-29699067 | Msa1149010:CDS | 25.0% |
| ! | AATAGTGACAGGATTTATTA+TGG | - | chr7_4:29699121-29699140 | None:intergenic | 25.0% |
| !! | GTAACAAATTTTATGTTCTC+TGG | + | chr7_4:29699281-29699300 | Msa1149010:intron | 25.0% |
| !!! | TCTGGCTATTTTTTTTTAAC+AGG | + | chr7_4:29699299-29699318 | Msa1149010:intron | 25.0% |
| !! | TTTTCTCAAATTATTAGTGG+CGG | - | chr7_4:29699569-29699588 | None:intergenic | 25.0% |
| ! | TAACTAGTTCTTCATAGCAA+TGG | + | chr7_4:29697787-29697806 | Msa1149010:exon | 30.0% |
| ACAAACAGTATTCATATCCA+TGG | - | chr7_4:29697828-29697847 | None:intergenic | 30.0% | |
| TTTAGAAAACCATCTCTAGT+TGG | + | chr7_4:29697987-29698006 | Msa1149010:intron | 30.0% | |
| TTCTTGCTGACCATTATTTA+AGG | - | chr7_4:29698290-29698309 | None:intergenic | 30.0% | |
| TTGCCAAATAAATAGAAACG+TGG | - | chr7_4:29698483-29698502 | None:intergenic | 30.0% | |
| ! | GGTTGGTTATATATTCTGTT+AGG | + | chr7_4:29698676-29698695 | Msa1149010:intron | 30.0% |
| !! | CTTGACATGAGCTATTTTAT+AGG | + | chr7_4:29698815-29698834 | Msa1149010:intron | 30.0% |
| ! | GTGTCAATGTTGATGAAATT+TGG | - | chr7_4:29699000-29699019 | None:intergenic | 30.0% |
| ! | CCAACAAATATCCTTTTGTA+GGG | - | chr7_4:29699032-29699051 | None:intergenic | 30.0% |
| ! | TCCAACAAATATCCTTTTGT+AGG | - | chr7_4:29699033-29699052 | None:intergenic | 30.0% |
| AAATTTAGACAAGTACGAGT+CGG | + | chr7_4:29699176-29699195 | Msa1149010:CDS | 30.0% | |
| !! | TCTTATTACTAGCTTGTTGT+AGG | + | chr7_4:29699257-29699276 | Msa1149010:intron | 30.0% |
| ! | GAAAGTGTAAGTCCATATTT+AGG | + | chr7_4:29699479-29699498 | Msa1149010:CDS | 30.0% |
| AAAATTATGTGTTAGTACCC+AGG | + | chr7_4:29699752-29699771 | Msa1149010:three_prime_UTR | 30.0% | |
| ! | TAACTAGTTCTTCATAGCAA+TGG | + | chr7_4:29697787-29697806 | Msa1149010:exon | 30.0% |
| ACAAACAGTATTCATATCCA+TGG | - | chr7_4:29697828-29697847 | None:intergenic | 30.0% | |
| TTTAGAAAACCATCTCTAGT+TGG | + | chr7_4:29697987-29698006 | Msa1149010:intron | 30.0% | |
| TTCTTGCTGACCATTATTTA+AGG | - | chr7_4:29698290-29698309 | None:intergenic | 30.0% | |
| TTGCCAAATAAATAGAAACG+TGG | - | chr7_4:29698483-29698502 | None:intergenic | 30.0% | |
| ! | GGTTGGTTATATATTCTGTT+AGG | + | chr7_4:29698676-29698695 | Msa1149010:intron | 30.0% |
| !! | CTTGACATGAGCTATTTTAT+AGG | + | chr7_4:29698815-29698834 | Msa1149010:intron | 30.0% |
| ! | GTGTCAATGTTGATGAAATT+TGG | - | chr7_4:29699000-29699019 | None:intergenic | 30.0% |
| ! | CCAACAAATATCCTTTTGTA+GGG | - | chr7_4:29699032-29699051 | None:intergenic | 30.0% |
| ! | TCCAACAAATATCCTTTTGT+AGG | - | chr7_4:29699033-29699052 | None:intergenic | 30.0% |
| AAATTTAGACAAGTACGAGT+CGG | + | chr7_4:29699176-29699195 | Msa1149010:CDS | 30.0% | |
| !! | TCTTATTACTAGCTTGTTGT+AGG | + | chr7_4:29699257-29699276 | Msa1149010:intron | 30.0% |
| ! | GAAAGTGTAAGTCCATATTT+AGG | + | chr7_4:29699479-29699498 | Msa1149010:CDS | 30.0% |
| !! | AGGGTTTTATCTGGATTTTG+AGG | - | chr7_4:29697734-29697753 | None:intergenic | 35.0% |
| GCTTGCCCTAAATACTAAAT+CGG | + | chr7_4:29698013-29698032 | Msa1149010:intron | 35.0% | |
| ! | TTGAATGTGTAATGACTTGG+CGG | - | chr7_4:29698167-29698186 | None:intergenic | 35.0% |
| !! | TTCGGAGACACATTTTTCAA+TGG | - | chr7_4:29698222-29698241 | None:intergenic | 35.0% |
| TTAAACTTTCGTTCATGCGT+AGG | + | chr7_4:29698410-29698429 | Msa1149010:intron | 35.0% | |
| TGGCCACGTTTCTATTTATT+TGG | + | chr7_4:29698477-29698496 | Msa1149010:CDS | 35.0% | |
| GATGAATACGTTACAACTCA+AGG | + | chr7_4:29698580-29698599 | Msa1149010:CDS | 35.0% | |
| ACATTCAAAGACCCTACAAA+AGG | + | chr7_4:29699018-29699037 | Msa1149010:CDS | 35.0% | |
| CCCTACAAAAGGATATTTGT+TGG | + | chr7_4:29699029-29699048 | Msa1149010:CDS | 35.0% | |
| !!! | TAATTGTGTTTTTGGAGCTG+AGG | + | chr7_4:29699056-29699075 | Msa1149010:CDS | 35.0% |
| TTTGCAAAATTTCCAGCTGT+GGG | - | chr7_4:29699145-29699164 | None:intergenic | 35.0% | |
| ATTTGCAAAATTTCCAGCTG+TGG | - | chr7_4:29699146-29699165 | None:intergenic | 35.0% | |
| TTTATAGTCTCCAGCTACAA+AGG | - | chr7_4:29699205-29699224 | None:intergenic | 35.0% | |
| TTGTAGCTGGAGACTATAAA+TGG | + | chr7_4:29699205-29699224 | Msa1149010:CDS | 35.0% | |
| !! | CGAGAATTTTAGTGTCAGAT+GGG | - | chr7_4:29699408-29699427 | None:intergenic | 35.0% |
| !! | ACGAGAATTTTAGTGTCAGA+TGG | - | chr7_4:29699409-29699428 | None:intergenic | 35.0% |
| ATCTGACACTAAAATTCTCG+TGG | + | chr7_4:29699408-29699427 | Msa1149010:CDS | 35.0% | |
| ! | TTTCCCACATATTTGGTCTT+TGG | - | chr7_4:29699449-29699468 | None:intergenic | 35.0% |
| CAACATGTTTCCCACATATT+TGG | - | chr7_4:29699456-29699475 | None:intergenic | 35.0% | |
| CGCAGAAGATAACCTAAATA+TGG | - | chr7_4:29699494-29699513 | None:intergenic | 35.0% | |
| !! | AGGGTTTTATCTGGATTTTG+AGG | - | chr7_4:29697734-29697753 | None:intergenic | 35.0% |
| GCTTGCCCTAAATACTAAAT+CGG | + | chr7_4:29698013-29698032 | Msa1149010:intron | 35.0% | |
| ! | TTGAATGTGTAATGACTTGG+CGG | - | chr7_4:29698167-29698186 | None:intergenic | 35.0% |
| !! | TTCGGAGACACATTTTTCAA+TGG | - | chr7_4:29698222-29698241 | None:intergenic | 35.0% |
| TTAAACTTTCGTTCATGCGT+AGG | + | chr7_4:29698410-29698429 | Msa1149010:intron | 35.0% | |
| TGGCCACGTTTCTATTTATT+TGG | + | chr7_4:29698477-29698496 | Msa1149010:CDS | 35.0% | |
| GATGAATACGTTACAACTCA+AGG | + | chr7_4:29698580-29698599 | Msa1149010:CDS | 35.0% | |
| ACATTCAAAGACCCTACAAA+AGG | + | chr7_4:29699018-29699037 | Msa1149010:CDS | 35.0% | |
| CCCTACAAAAGGATATTTGT+TGG | + | chr7_4:29699029-29699048 | Msa1149010:CDS | 35.0% | |
| !!! | TAATTGTGTTTTTGGAGCTG+AGG | + | chr7_4:29699056-29699075 | Msa1149010:CDS | 35.0% |
| TTTGCAAAATTTCCAGCTGT+GGG | - | chr7_4:29699145-29699164 | None:intergenic | 35.0% | |
| ATTTGCAAAATTTCCAGCTG+TGG | - | chr7_4:29699146-29699165 | None:intergenic | 35.0% | |
| TTTATAGTCTCCAGCTACAA+AGG | - | chr7_4:29699205-29699224 | None:intergenic | 35.0% | |
| TTGTAGCTGGAGACTATAAA+TGG | + | chr7_4:29699205-29699224 | Msa1149010:CDS | 35.0% | |
| !! | CGAGAATTTTAGTGTCAGAT+GGG | - | chr7_4:29699408-29699427 | None:intergenic | 35.0% |
| !! | ACGAGAATTTTAGTGTCAGA+TGG | - | chr7_4:29699409-29699428 | None:intergenic | 35.0% |
| ATCTGACACTAAAATTCTCG+TGG | + | chr7_4:29699408-29699427 | Msa1149010:CDS | 35.0% | |
| ! | TTTCCCACATATTTGGTCTT+TGG | - | chr7_4:29699449-29699468 | None:intergenic | 35.0% |
| CAACATGTTTCCCACATATT+TGG | - | chr7_4:29699456-29699475 | None:intergenic | 35.0% | |
| CGCAGAAGATAACCTAAATA+TGG | - | chr7_4:29699494-29699513 | None:intergenic | 35.0% | |
| GGTTACTGTATGTTCTACCA+TGG | + | chr7_4:29697808-29697827 | Msa1149010:CDS | 40.0% | |
| GTCCTTCTCTTTGCTTTCTA+AGG | + | chr7_4:29698193-29698212 | Msa1149010:CDS | 40.0% | |
| !! | GGAGACACATTTTTCAATGG+AGG | - | chr7_4:29698219-29698238 | None:intergenic | 40.0% |
| TTGAAGCTGGAGGTTACAAA+TGG | + | chr7_4:29698246-29698265 | Msa1149010:CDS | 40.0% | |
| AGCTTGTCTATATACCCATC+TGG | + | chr7_4:29698433-29698452 | Msa1149010:CDS | 40.0% | |
| GCTTGTCTATATACCCATCT+GGG | + | chr7_4:29698434-29698453 | Msa1149010:CDS | 40.0% | |
| ! | GCATTGATCTCCCAATCAAT+AGG | - | chr7_4:29698526-29698545 | None:intergenic | 40.0% |
| AACATGCAGATGCATCTGTT+AGG | + | chr7_4:29698941-29698960 | Msa1149010:intron | 40.0% | |
| TTCATGTCCTGAAAACAGAG+TGG | + | chr7_4:29698968-29698987 | Msa1149010:CDS | 40.0% | |
| TCATGTCCTGAAAACAGAGT+GGG | + | chr7_4:29698969-29698988 | Msa1149010:CDS | 40.0% | |
| GTTGTGAAGACTGCCAATAA+AGG | + | chr7_4:29699084-29699103 | Msa1149010:CDS | 40.0% | |
| GGATAAGCAATCGCCTTTAT+TGG | - | chr7_4:29699100-29699119 | None:intergenic | 40.0% | |
| ! | AAGCTCCTTTTATACCCCAA+TGG | + | chr7_4:29699322-29699341 | Msa1149010:CDS | 40.0% |
| ATGGATACGAACACAGACAT+TGG | + | chr7_4:29699518-29699537 | Msa1149010:CDS | 40.0% | |
| TCTCAAATTATTAGTGGCGG+CGG | - | chr7_4:29699566-29699585 | None:intergenic | 40.0% | |
| TATACGTGTCTTTGTCGTGT+CGG | + | chr7_4:29699608-29699627 | Msa1149010:three_prime_UTR | 40.0% | |
| !! | ATAACCTTCACTGATTCCCT+GGG | - | chr7_4:29697691-29697710 | None:intergenic | 40.0% |
| !! | TATAACCTTCACTGATTCCC+TGG | - | chr7_4:29697692-29697711 | None:intergenic | 40.0% |
| GGTTACTGTATGTTCTACCA+TGG | + | chr7_4:29697808-29697827 | Msa1149010:CDS | 40.0% | |
| GTCCTTCTCTTTGCTTTCTA+AGG | + | chr7_4:29698193-29698212 | Msa1149010:CDS | 40.0% | |
| !! | GGAGACACATTTTTCAATGG+AGG | - | chr7_4:29698219-29698238 | None:intergenic | 40.0% |
| TTGAAGCTGGAGGTTACAAA+TGG | + | chr7_4:29698246-29698265 | Msa1149010:CDS | 40.0% | |
| AGCTTGTCTATATACCCATC+TGG | + | chr7_4:29698433-29698452 | Msa1149010:CDS | 40.0% | |
| GCTTGTCTATATACCCATCT+GGG | + | chr7_4:29698434-29698453 | Msa1149010:CDS | 40.0% | |
| ! | GCATTGATCTCCCAATCAAT+AGG | - | chr7_4:29698526-29698545 | None:intergenic | 40.0% |
| AACATGCAGATGCATCTGTT+AGG | + | chr7_4:29698941-29698960 | Msa1149010:intron | 40.0% | |
| TTCATGTCCTGAAAACAGAG+TGG | + | chr7_4:29698968-29698987 | Msa1149010:CDS | 40.0% | |
| TCATGTCCTGAAAACAGAGT+GGG | + | chr7_4:29698969-29698988 | Msa1149010:CDS | 40.0% | |
| GTTGTGAAGACTGCCAATAA+AGG | + | chr7_4:29699084-29699103 | Msa1149010:CDS | 40.0% | |
| GGATAAGCAATCGCCTTTAT+TGG | - | chr7_4:29699100-29699119 | None:intergenic | 40.0% | |
| ! | AAGCTCCTTTTATACCCCAA+TGG | + | chr7_4:29699322-29699341 | Msa1149010:CDS | 40.0% |
| ATGGATACGAACACAGACAT+TGG | + | chr7_4:29699518-29699537 | Msa1149010:CDS | 40.0% | |
| TCTCAAATTATTAGTGGCGG+CGG | - | chr7_4:29699566-29699585 | None:intergenic | 40.0% | |
| TATACGTGTCTTTGTCGTGT+CGG | + | chr7_4:29699608-29699627 | Msa1149010:three_prime_UTR | 40.0% | |
| ATGGGTGTGGTAGACAACAA+TGG | - | chr7_4:29697851-29697870 | None:intergenic | 45.0% | |
| TTGTCTACCACACCCATGAA+AGG | + | chr7_4:29697854-29697873 | Msa1149010:CDS | 45.0% | |
| TGAATCACCTTTCATGGGTG+TGG | - | chr7_4:29697864-29697883 | None:intergenic | 45.0% | |
| GGCCTTAGAAAGCAAAGAGA+AGG | - | chr7_4:29698198-29698217 | None:intergenic | 45.0% | |
| ACCTCCAGCTTCAAACTCTT+CGG | - | chr7_4:29698240-29698259 | None:intergenic | 45.0% | |
| AACACAGAGAGGAATGGACA+TGG | + | chr7_4:29698457-29698476 | Msa1149010:CDS | 45.0% | |
| CATGTCCTGAAAACAGAGTG+GGG | + | chr7_4:29698970-29698989 | Msa1149010:CDS | 45.0% | |
| ! | GAATACCCCACTCTGTTTTC+AGG | - | chr7_4:29698978-29698997 | None:intergenic | 45.0% |
| CGACTCCATTGGGGTATAAA+AGG | - | chr7_4:29699330-29699349 | None:intergenic | 45.0% | |
| TTTCCCTCAACGACTCCATT+GGG | - | chr7_4:29699340-29699359 | None:intergenic | 45.0% | |
| AATGGAGTCGTTGAGGGAAA+GGG | + | chr7_4:29699340-29699359 | Msa1149010:CDS | 45.0% | |
| GCGCCAAAGACCAAATATGT+GGG | + | chr7_4:29699443-29699462 | Msa1149010:CDS | 45.0% | |
| AGGTTATCTTCTGCGAAGCA+TGG | + | chr7_4:29699499-29699518 | Msa1149010:CDS | 45.0% | |
| TCCTCGCGTTATGTGTGTTT+CGG | - | chr7_4:29699661-29699680 | None:intergenic | 45.0% | |
| ATGGGTGTGGTAGACAACAA+TGG | - | chr7_4:29697851-29697870 | None:intergenic | 45.0% | |
| TTGTCTACCACACCCATGAA+AGG | + | chr7_4:29697854-29697873 | Msa1149010:CDS | 45.0% | |
| TGAATCACCTTTCATGGGTG+TGG | - | chr7_4:29697864-29697883 | None:intergenic | 45.0% | |
| GGCCTTAGAAAGCAAAGAGA+AGG | - | chr7_4:29698198-29698217 | None:intergenic | 45.0% | |
| ACCTCCAGCTTCAAACTCTT+CGG | - | chr7_4:29698240-29698259 | None:intergenic | 45.0% | |
| AACACAGAGAGGAATGGACA+TGG | + | chr7_4:29698457-29698476 | Msa1149010:CDS | 45.0% | |
| CATGTCCTGAAAACAGAGTG+GGG | + | chr7_4:29698970-29698989 | Msa1149010:CDS | 45.0% | |
| ! | GAATACCCCACTCTGTTTTC+AGG | - | chr7_4:29698978-29698997 | None:intergenic | 45.0% |
| CGACTCCATTGGGGTATAAA+AGG | - | chr7_4:29699330-29699349 | None:intergenic | 45.0% | |
| TTTCCCTCAACGACTCCATT+GGG | - | chr7_4:29699340-29699359 | None:intergenic | 45.0% | |
| AATGGAGTCGTTGAGGGAAA+GGG | + | chr7_4:29699340-29699359 | Msa1149010:CDS | 45.0% | |
| GCGCCAAAGACCAAATATGT+GGG | + | chr7_4:29699443-29699462 | Msa1149010:CDS | 45.0% | |
| AGGTTATCTTCTGCGAAGCA+TGG | + | chr7_4:29699499-29699518 | Msa1149010:CDS | 45.0% | |
| TCCTCGCGTTATGTGTGTTT+CGG | - | chr7_4:29699661-29699680 | None:intergenic | 45.0% | |
| GCAAGCACACCAACTAGAGA+TGG | - | chr7_4:29697999-29698018 | None:intergenic | 50.0% | |
| ! | GTCTCCGAAGAGTTTGAAGC+TGG | + | chr7_4:29698233-29698252 | Msa1149010:CDS | 50.0% |
| ! | TCCGAAGAGTTTGAAGCTGG+AGG | + | chr7_4:29698236-29698255 | Msa1149010:CDS | 50.0% |
| TCCTCTCTGTGTTCCCAGAT+GGG | - | chr7_4:29698450-29698469 | None:intergenic | 50.0% | |
| TTCCTCTCTGTGTTCCCAGA+TGG | - | chr7_4:29698451-29698470 | None:intergenic | 50.0% | |
| TCTGGGAACACAGAGAGGAA+TGG | + | chr7_4:29698451-29698470 | Msa1149010:CDS | 50.0% | |
| CAGCTGTGGGAAATAGTGAC+AGG | - | chr7_4:29699132-29699151 | None:intergenic | 50.0% | |
| CTGTCACTATTTCCCACAGC+TGG | + | chr7_4:29699130-29699149 | Msa1149010:CDS | 50.0% | |
| GAGTCGGAATCCTTTGTAGC+TGG | + | chr7_4:29699192-29699211 | Msa1149010:CDS | 50.0% | |
| ATACCCCAATGGAGTCGTTG+AGG | + | chr7_4:29699333-29699352 | Msa1149010:CDS | 50.0% | |
| TACCCCAATGGAGTCGTTGA+GGG | + | chr7_4:29699334-29699353 | Msa1149010:CDS | 50.0% | |
| TTCCCTCAACGACTCCATTG+GGG | - | chr7_4:29699339-29699358 | None:intergenic | 50.0% | |
| CTTTCCCTCAACGACTCCAT+TGG | - | chr7_4:29699341-29699360 | None:intergenic | 50.0% | |
| CAATGGAGTCGTTGAGGGAA+AGG | + | chr7_4:29699339-29699358 | Msa1149010:CDS | 50.0% | |
| CGCGCCAAAGACCAAATATG+TGG | + | chr7_4:29699442-29699461 | Msa1149010:CDS | 50.0% | |
| ACCGAAACACACATAACGCG+AGG | + | chr7_4:29699657-29699676 | Msa1149010:three_prime_UTR | 50.0% | |
| GCAAGCACACCAACTAGAGA+TGG | - | chr7_4:29697999-29698018 | None:intergenic | 50.0% | |
| ! | GTCTCCGAAGAGTTTGAAGC+TGG | + | chr7_4:29698233-29698252 | Msa1149010:CDS | 50.0% |
| ! | TCCGAAGAGTTTGAAGCTGG+AGG | + | chr7_4:29698236-29698255 | Msa1149010:CDS | 50.0% |
| TCCTCTCTGTGTTCCCAGAT+GGG | - | chr7_4:29698450-29698469 | None:intergenic | 50.0% | |
| TTCCTCTCTGTGTTCCCAGA+TGG | - | chr7_4:29698451-29698470 | None:intergenic | 50.0% | |
| TCTGGGAACACAGAGAGGAA+TGG | + | chr7_4:29698451-29698470 | Msa1149010:CDS | 50.0% | |
| CAGCTGTGGGAAATAGTGAC+AGG | - | chr7_4:29699132-29699151 | None:intergenic | 50.0% | |
| CTGTCACTATTTCCCACAGC+TGG | + | chr7_4:29699130-29699149 | Msa1149010:CDS | 50.0% | |
| GAGTCGGAATCCTTTGTAGC+TGG | + | chr7_4:29699192-29699211 | Msa1149010:CDS | 50.0% | |
| ATACCCCAATGGAGTCGTTG+AGG | + | chr7_4:29699333-29699352 | Msa1149010:CDS | 50.0% | |
| TACCCCAATGGAGTCGTTGA+GGG | + | chr7_4:29699334-29699353 | Msa1149010:CDS | 50.0% | |
| TTCCCTCAACGACTCCATTG+GGG | - | chr7_4:29699339-29699358 | None:intergenic | 50.0% | |
| CTTTCCCTCAACGACTCCAT+TGG | - | chr7_4:29699341-29699360 | None:intergenic | 50.0% | |
| CAATGGAGTCGTTGAGGGAA+AGG | + | chr7_4:29699339-29699358 | Msa1149010:CDS | 50.0% | |
| CGCGCCAAAGACCAAATATG+TGG | + | chr7_4:29699442-29699461 | Msa1149010:CDS | 50.0% | |
| ACCGAAACACACATAACGCG+AGG | + | chr7_4:29699657-29699676 | Msa1149010:three_prime_UTR | 50.0% | |
| ACCCATCTGGGAACACAGAG+AGG | + | chr7_4:29698446-29698465 | Msa1149010:CDS | 55.0% | |
| !! | ACGCGAGGAGTGTTCGTGAT+AGG | + | chr7_4:29699672-29699691 | Msa1149010:three_prime_UTR | 55.0% |
| ACCCATCTGGGAACACAGAG+AGG | + | chr7_4:29698446-29698465 | Msa1149010:CDS | 55.0% | |
| !! | ACGCGAGGAGTGTTCGTGAT+AGG | + | chr7_4:29699672-29699691 | Msa1149010:three_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 29697691 | 29699771 | 29697691 | ID=Msa1149010;Name=Msa1149010 |
| chr7_4 | mRNA | 29697691 | 29699771 | 29697691 | ID=Msa1149010-mRNA-1;Parent=Msa1149010;Name=Msa1149010-mRNA-1;_AED=0.27;_eAED=0.27;_QI=115|1|1|1|1|1|5|165|305 |
| chr7_4 | exon | 29697691 | 29697875 | 29697691 | ID=Msa1149010-mRNA-1:exon:7315;Parent=Msa1149010-mRNA-1 |
| chr7_4 | exon | 29698153 | 29698267 | 29698153 | ID=Msa1149010-mRNA-1:exon:7316;Parent=Msa1149010-mRNA-1 |
| chr7_4 | exon | 29698432 | 29698601 | 29698432 | ID=Msa1149010-mRNA-1:exon:7317;Parent=Msa1149010-mRNA-1 |
| chr7_4 | exon | 29698950 | 29699226 | 29698950 | ID=Msa1149010-mRNA-1:exon:7318;Parent=Msa1149010-mRNA-1 |
| chr7_4 | exon | 29699321 | 29699771 | 29699321 | ID=Msa1149010-mRNA-1:exon:7319;Parent=Msa1149010-mRNA-1 |
| chr7_4 | five_prime_UTR | 29697691 | 29697805 | 29697691 | ID=Msa1149010-mRNA-1:five_prime_utr;Parent=Msa1149010-mRNA-1 |
| chr7_4 | CDS | 29697806 | 29697875 | 29697806 | ID=Msa1149010-mRNA-1:cds;Parent=Msa1149010-mRNA-1 |
| chr7_4 | CDS | 29698153 | 29698267 | 29698153 | ID=Msa1149010-mRNA-1:cds;Parent=Msa1149010-mRNA-1 |
| chr7_4 | CDS | 29698432 | 29698601 | 29698432 | ID=Msa1149010-mRNA-1:cds;Parent=Msa1149010-mRNA-1 |
| chr7_4 | CDS | 29698950 | 29699226 | 29698950 | ID=Msa1149010-mRNA-1:cds;Parent=Msa1149010-mRNA-1 |
| chr7_4 | CDS | 29699321 | 29699606 | 29699321 | ID=Msa1149010-mRNA-1:cds;Parent=Msa1149010-mRNA-1 |
| chr7_4 | three_prime_UTR | 29699607 | 29699771 | 29699607 | ID=Msa1149010-mRNA-1:three_prime_utr;Parent=Msa1149010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
