Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149000 | GAU11198.1 | 80.075 | 266 | 53 | 0 | 9 | 274 | 18 | 283 | 7.53e-158 | 452 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149000 | sp|Q9FPT1|UBP12_ARATH | 32.667 | 150 | 92 | 4 | 18 | 166 | 42 | 183 | 8.52e-17 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149000 | A0A2K3N5Y4 | 82.558 | 258 | 44 | 1 | 8 | 264 | 1 | 258 | 6.98e-156 | 446 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0627090 | Msa1149000 | 0.834837 | 2.378458e-56 | -8.615850e-47 |
| Msa0665160 | Msa1149000 | 0.824925 | 6.195984e-54 | -8.615850e-47 |
| Msa0427820 | Msa1149000 | 0.819533 | 1.104600e-52 | -8.615850e-47 |
| Msa0474060 | Msa1149000 | 0.818999 | 1.462151e-52 | -8.615850e-47 |
| Msa1039680 | Msa1149000 | 0.815946 | 7.124794e-52 | -8.615850e-47 |
| Msa1060340 | Msa1149000 | 0.803888 | 2.811053e-49 | -8.615850e-47 |
| Msa0268100 | Msa1149000 | 0.804708 | 1.897009e-49 | -8.615850e-47 |
| Msa1149000 | Msa1149010 | 0.973380 | 2.489612e-136 | -8.615850e-47 |
| Msa1149000 | Msa1219820 | 0.801683 | 8.021607e-49 | -8.615850e-47 |
| Msa1149000 | Msa1429860 | 0.809324 | 2.001989e-50 | -8.615850e-47 |
| Msa0530390 | Msa1149000 | 0.835661 | 1.473995e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149000 | MtrunA17_Chr4g0069161 | 41.313 | 259 | 146 | 3 | 26 | 278 | 14 | 272 | 7.82e-58 | 188 |
| Msa1149000 | MtrunA17_Chr8g0334821 | 35.667 | 300 | 164 | 8 | 9 | 279 | 5 | 304 | 6.68e-52 | 177 |
| Msa1149000 | MtrunA17_Chr1g0166871 | 29.078 | 141 | 94 | 3 | 30 | 170 | 12 | 146 | 2.90e-20 | 89.0 |
| Msa1149000 | MtrunA17_Chr5g0439971 | 32.353 | 136 | 84 | 3 | 29 | 164 | 59 | 186 | 1.77e-19 | 89.0 |
| Msa1149000 | MtrunA17_Chr5g0443161 | 32.836 | 134 | 83 | 3 | 29 | 162 | 31 | 157 | 1.07e-18 | 84.0 |
| Msa1149000 | MtrunA17_Chr3g0119031 | 30.986 | 142 | 90 | 3 | 28 | 169 | 53 | 186 | 2.93e-18 | 85.5 |
| Msa1149000 | MtrunA17_Chr1g0170261 | 29.697 | 165 | 101 | 4 | 2 | 166 | 36 | 185 | 1.55e-17 | 83.2 |
| Msa1149000 | MtrunA17_Chr5g0443194 | 35.878 | 131 | 76 | 4 | 32 | 162 | 20 | 142 | 2.62e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1149000 | AT3G17380.1 | 44.403 | 268 | 139 | 5 | 27 | 290 | 17 | 278 | 2.47e-72 | 226 |
| Msa1149000 | AT3G20370.1 | 37.647 | 255 | 150 | 7 | 18 | 266 | 73 | 324 | 1.42e-45 | 159 |
| Msa1149000 | AT3G20370.2 | 37.647 | 255 | 150 | 7 | 18 | 266 | 51 | 302 | 1.62e-45 | 158 |
| Msa1149000 | AT1G58270.1 | 34.524 | 252 | 150 | 5 | 25 | 268 | 90 | 334 | 3.59e-39 | 142 |
| Msa1149000 | AT3G28220.1 | 36.145 | 249 | 151 | 7 | 25 | 268 | 76 | 321 | 8.54e-39 | 140 |
| Msa1149000 | AT3G22080.1 | 32.000 | 275 | 179 | 6 | 13 | 279 | 2 | 276 | 4.64e-38 | 137 |
| Msa1149000 | AT2G15710.1 | 35.865 | 237 | 145 | 5 | 25 | 257 | 94 | 327 | 2.53e-36 | 134 |
| Msa1149000 | AT5G26280.1 | 34.025 | 241 | 156 | 3 | 25 | 263 | 55 | 294 | 4.58e-35 | 130 |
| Msa1149000 | AT5G26280.3 | 34.025 | 241 | 156 | 3 | 25 | 263 | 74 | 313 | 5.60e-35 | 130 |
| Msa1149000 | AT3G20360.1 | 31.502 | 273 | 175 | 7 | 17 | 279 | 54 | 324 | 5.92e-35 | 130 |
| Msa1149000 | AT5G26260.1 | 34.101 | 217 | 141 | 2 | 17 | 232 | 48 | 263 | 6.38e-35 | 130 |
| Msa1149000 | AT5G26320.1 | 32.510 | 243 | 159 | 4 | 25 | 263 | 55 | 296 | 1.38e-34 | 129 |
| Msa1149000 | AT5G26290.1 | 34.583 | 240 | 148 | 4 | 25 | 262 | 48 | 280 | 1.79e-34 | 128 |
| Msa1149000 | AT2G04170.5 | 34.286 | 245 | 158 | 3 | 25 | 267 | 125 | 368 | 7.93e-33 | 124 |
| Msa1149000 | AT2G04170.4 | 34.025 | 241 | 156 | 3 | 25 | 263 | 3 | 242 | 4.60e-32 | 121 |
| Msa1149000 | AT2G04170.3 | 34.025 | 241 | 156 | 3 | 25 | 263 | 3 | 242 | 4.60e-32 | 121 |
| Msa1149000 | AT2G04170.6 | 34.025 | 241 | 156 | 3 | 25 | 263 | 85 | 324 | 2.49e-31 | 120 |
| Msa1149000 | AT4G09770.3 | 31.020 | 245 | 158 | 7 | 25 | 265 | 5 | 242 | 2.92e-31 | 117 |
| Msa1149000 | AT4G09770.2 | 30.620 | 258 | 165 | 8 | 25 | 278 | 5 | 252 | 3.66e-31 | 118 |
| Msa1149000 | AT4G09770.1 | 30.620 | 258 | 165 | 8 | 25 | 278 | 5 | 252 | 3.66e-31 | 118 |
| Msa1149000 | AT2G04170.2 | 34.025 | 241 | 156 | 3 | 25 | 263 | 125 | 364 | 4.02e-31 | 120 |
| Msa1149000 | AT2G04170.1 | 34.025 | 241 | 156 | 3 | 25 | 263 | 125 | 364 | 4.02e-31 | 120 |
| Msa1149000 | AT4G09770.4 | 30.620 | 258 | 165 | 8 | 25 | 278 | 31 | 278 | 5.63e-31 | 119 |
| Msa1149000 | AT4G09770.5 | 31.020 | 245 | 158 | 7 | 25 | 265 | 31 | 268 | 6.00e-31 | 117 |
| Msa1149000 | AT5G26300.1 | 31.225 | 253 | 170 | 4 | 25 | 275 | 55 | 305 | 1.35e-30 | 118 |
| Msa1149000 | AT3G20380.1 | 30.992 | 242 | 159 | 3 | 26 | 263 | 83 | 320 | 3.30e-30 | 117 |
| Msa1149000 | AT3G22085.1 | 29.520 | 271 | 160 | 9 | 16 | 279 | 5 | 251 | 2.31e-29 | 114 |
| Msa1149000 | AT2G04190.1 | 33.333 | 210 | 137 | 3 | 25 | 232 | 115 | 323 | 9.33e-28 | 111 |
| Msa1149000 | AT4G09780.2 | 28.519 | 270 | 185 | 6 | 4 | 270 | 37 | 301 | 1.62e-27 | 111 |
| Msa1149000 | AT1G65150.2 | 30.833 | 240 | 151 | 5 | 25 | 262 | 15 | 241 | 1.69e-27 | 108 |
| Msa1149000 | AT1G65150.1 | 30.833 | 240 | 151 | 5 | 25 | 262 | 15 | 241 | 1.69e-27 | 108 |
| Msa1149000 | AT4G09780.1 | 31.651 | 218 | 144 | 4 | 4 | 219 | 37 | 251 | 2.61e-27 | 110 |
| Msa1149000 | AT4G00780.1 | 31.579 | 247 | 148 | 9 | 32 | 270 | 22 | 255 | 2.56e-26 | 105 |
| Msa1149000 | AT4G01390.1 | 31.667 | 240 | 146 | 7 | 32 | 264 | 22 | 250 | 5.13e-26 | 105 |
| Msa1149000 | AT2G04170.7 | 35.233 | 193 | 123 | 2 | 25 | 216 | 125 | 316 | 5.29e-26 | 105 |
| Msa1149000 | AT5G26280.2 | 30.962 | 239 | 139 | 4 | 25 | 261 | 55 | 269 | 2.56e-24 | 100 |
| Msa1149000 | AT1G69660.1 | 31.383 | 188 | 126 | 3 | 97 | 281 | 8 | 195 | 9.58e-24 | 97.4 |
| Msa1149000 | AT1G65050.2 | 34.375 | 128 | 76 | 2 | 25 | 152 | 15 | 134 | 6.70e-20 | 85.1 |
| Msa1149000 | AT1G65050.1 | 34.375 | 128 | 76 | 2 | 25 | 152 | 15 | 134 | 6.70e-20 | 85.1 |
| Msa1149000 | AT1G69650.1 | 27.778 | 288 | 160 | 11 | 8 | 279 | 1 | 256 | 9.46e-20 | 87.8 |
| Msa1149000 | AT3G46190.1 | 28.881 | 277 | 152 | 10 | 25 | 294 | 28 | 266 | 6.91e-19 | 85.5 |
| Msa1149000 | AT3G46190.2 | 28.881 | 277 | 152 | 10 | 25 | 294 | 48 | 286 | 1.66e-18 | 84.7 |
| Msa1149000 | AT1G65370.1 | 29.787 | 188 | 111 | 5 | 82 | 261 | 1 | 175 | 3.15e-18 | 82.4 |
| Msa1149000 | AT5G06600.1 | 32.667 | 150 | 92 | 4 | 18 | 166 | 42 | 183 | 8.66e-18 | 84.3 |
| Msa1149000 | AT5G06600.2 | 32.667 | 150 | 92 | 4 | 18 | 166 | 41 | 182 | 9.24e-18 | 84.3 |
| Msa1149000 | AT5G06600.3 | 32.026 | 153 | 95 | 4 | 18 | 169 | 42 | 186 | 8.15e-17 | 81.3 |
| Msa1149000 | AT3G11910.3 | 31.429 | 140 | 87 | 4 | 28 | 166 | 51 | 182 | 2.29e-16 | 80.1 |
| Msa1149000 | AT3G11910.1 | 31.429 | 140 | 87 | 4 | 28 | 166 | 51 | 182 | 2.29e-16 | 80.1 |
| Msa1149000 | AT3G11910.4 | 27.647 | 170 | 114 | 4 | 1 | 169 | 23 | 184 | 9.25e-16 | 78.2 |
| Msa1149000 | AT3G11910.2 | 27.647 | 170 | 114 | 4 | 1 | 169 | 23 | 184 | 9.25e-16 | 78.2 |
| Msa1149000 | AT2G32870.1 | 26.894 | 264 | 163 | 9 | 22 | 270 | 117 | 365 | 7.41e-15 | 75.1 |
| Msa1149000 | AT2G32870.2 | 27.237 | 257 | 157 | 9 | 22 | 263 | 117 | 358 | 2.07e-13 | 70.5 |
| Msa1149000 | AT2G32880.1 | 25.379 | 264 | 169 | 9 | 22 | 270 | 17 | 267 | 8.33e-13 | 68.2 |
| Msa1149000 | AT2G32880.2 | 25.292 | 257 | 164 | 9 | 22 | 263 | 17 | 260 | 2.12e-11 | 63.9 |
Find 74 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCAATAGGTAATGAAAT+TGG | 0.139287 | 7_4:-29685363 | None:intergenic |
| TGGCCACGTTTCTATTTATT+TGG | 0.172284 | 7_4:+29685329 | Msa1149000:CDS |
| CAACATGTTTCCCACATATT+TGG | 0.189759 | 7_4:-29686305 | None:intergenic |
| GTCCTTCTCTTTGCTTTCTA+AGG | 0.213307 | 7_4:+29685045 | Msa1149000:CDS |
| GTGTCAATGTTGATGAAATT+TGG | 0.232113 | 7_4:-29685849 | None:intergenic |
| GGATAAGCAATCGCCTTTAT+TGG | 0.263509 | 7_4:-29685949 | None:intergenic |
| TTTCCCACATATTTGGTCTT+TGG | 0.268483 | 7_4:-29686298 | None:intergenic |
| AATAGTGACAGGATTTATTA+TGG | 0.278861 | 7_4:-29685970 | None:intergenic |
| CGACTCCATTGGGGTATAAA+AGG | 0.287642 | 7_4:-29686179 | None:intergenic |
| GAAAGTGTAAGTCCATATTT+AGG | 0.297132 | 7_4:+29686331 | Msa1149000:CDS |
| CGCAGAAGATAACCTAAATA+TGG | 0.301652 | 7_4:-29686343 | None:intergenic |
| TTTATATGAATCACCTTTCA+TGG | 0.305529 | 7_4:-29684719 | None:intergenic |
| TTCTATTTATTTGGCAATCA+TGG | 0.321583 | 7_4:+29685338 | Msa1149000:CDS |
| TGGGTACTAACACATAATTT+TGG | 0.338609 | 7_4:-29686602 | None:intergenic |
| CAATTTCATTACCTATTGAT+TGG | 0.338977 | 7_4:+29685364 | Msa1149000:CDS |
| ATATGCTGAAAAGTTTATAA+TGG | 0.340449 | 7_4:-29685397 | None:intergenic |
| TTTCCCTCAACGACTCCATT+GGG | 0.382967 | 7_4:-29686189 | None:intergenic |
| TTGTAGCTGGAGACTATAAA+TGG | 0.384295 | 7_4:+29686057 | Msa1149000:CDS |
| AGCTTGTCTATATACCCATC+TGG | 0.388009 | 7_4:+29685285 | Msa1149000:CDS |
| ACGCGAGGAGTGTTCGTGAT+AGG | 0.407207 | 7_4:+29686524 | Msa1149000:three_prime_UTR |
| TCCTCGCGTTATGTGTGTTT+CGG | 0.408181 | 7_4:-29686510 | None:intergenic |
| CTTTCCCTCAACGACTCCAT+TGG | 0.417745 | 7_4:-29686190 | None:intergenic |
| AATTTCATTACCTATTGATT+GGG | 0.420880 | 7_4:+29685365 | Msa1149000:CDS |
| TTCCTCTCTGTGTTCCCAGA+TGG | 0.430780 | 7_4:-29685300 | None:intergenic |
| AATCAATAGGTAATGAAATT+GGG | 0.431396 | 7_4:-29685362 | None:intergenic |
| CCCTACAAAAGGATATTTGT+TGG | 0.450408 | 7_4:+29685881 | Msa1149000:CDS |
| TCCTCTCTGTGTTCCCAGAT+GGG | 0.451582 | 7_4:-29685299 | None:intergenic |
| GCATTGATCTCCCAATCAAT+AGG | 0.467061 | 7_4:-29685375 | None:intergenic |
| ACCTCCAGCTTCAAACTCTT+CGG | 0.467371 | 7_4:-29685089 | None:intergenic |
| TACCCCAATGGAGTCGTTGA+GGG | 0.484655 | 7_4:+29686186 | Msa1149000:CDS |
| CAATGGAGTCGTTGAGGGAA+AGG | 0.485272 | 7_4:+29686191 | Msa1149000:CDS |
| TTTGCAAAATTTCCAGCTGT+GGG | 0.488078 | 7_4:-29685994 | None:intergenic |
| ATTTGCAAAATTTCCAGCTG+TGG | 0.490568 | 7_4:-29685995 | None:intergenic |
| CTGTCACTATTTCCCACAGC+TGG | 0.497615 | 7_4:+29685982 | Msa1149000:CDS |
| GTTGTGAAGACTGCCAATAA+AGG | 0.497899 | 7_4:+29685936 | Msa1149000:CDS |
| CGCGCCAAAGACCAAATATG+TGG | 0.505810 | 7_4:+29686294 | Msa1149000:CDS |
| GAGTCGGAATCCTTTGTAGC+TGG | 0.507263 | 7_4:+29686044 | Msa1149000:CDS |
| TTGAAGCTGGAGGTTACAAA+TGG | 0.507558 | 7_4:+29685098 | Msa1149000:CDS |
| TAACTAGTTCTTCATAGCAA+TGG | 0.507939 | 7_4:+29684639 | Msa1149000:exon |
| CAGCTGTGGGAAATAGTGAC+AGG | 0.517244 | 7_4:-29685981 | None:intergenic |
| AACATGCAGATGCATCTGTT+AGG | 0.533883 | 7_4:+29685793 | Msa1149000:intron |
| TGAATCACCTTTCATGGGTG+TGG | 0.537773 | 7_4:-29684713 | None:intergenic |
| GTCTCCGAAGAGTTTGAAGC+TGG | 0.538769 | 7_4:+29685085 | Msa1149000:CDS |
| TTATATGAATCACCTTTCAT+GGG | 0.539533 | 7_4:-29684718 | None:intergenic |
| ACATTCAAAGACCCTACAAA+AGG | 0.543496 | 7_4:+29685870 | Msa1149000:CDS |
| AATGGAGTCGTTGAGGGAAA+GGG | 0.546147 | 7_4:+29686192 | Msa1149000:CDS |
| TTTATAGTCTCCAGCTACAA+AGG | 0.550212 | 7_4:-29686054 | None:intergenic |
| AGGTTATCTTCTGCGAAGCA+TGG | 0.555039 | 7_4:+29686351 | Msa1149000:CDS |
| TATACGTGTCTTTGTCGTGT+CGG | 0.559809 | 7_4:+29686460 | Msa1149000:three_prime_UTR |
| TCATGTCCTGAAAACAGAGT+GGG | 0.562047 | 7_4:+29685821 | Msa1149000:CDS |
| TTGAATGTGTAATGACTTGG+CGG | 0.569734 | 7_4:-29685016 | None:intergenic |
| TCTCAAATTATTAGTGGCGG+CGG | 0.574973 | 7_4:-29686415 | None:intergenic |
| GGCCTTAGAAAGCAAAGAGA+AGG | 0.575991 | 7_4:-29685047 | None:intergenic |
| ATCTGACACTAAAATTCTCG+TGG | 0.589622 | 7_4:+29686260 | Msa1149000:CDS |
| ACAAACAGTATTCATATCCA+TGG | 0.591072 | 7_4:-29684677 | None:intergenic |
| ATGGATACGAACACAGACAT+TGG | 0.595399 | 7_4:+29686370 | Msa1149000:CDS |
| ATACCCCAATGGAGTCGTTG+AGG | 0.601714 | 7_4:+29686185 | Msa1149000:CDS |
| TCCGAAGAGTTTGAAGCTGG+AGG | 0.602578 | 7_4:+29685088 | Msa1149000:CDS |
| GATGAATACGTTACAACTCA+AGG | 0.603967 | 7_4:+29685432 | Msa1149000:CDS |
| GCTTGTCTATATACCCATCT+GGG | 0.606052 | 7_4:+29685286 | Msa1149000:CDS |
| AACTTATAGGGAATCAGTGA+AGG | 0.610016 | 7_4:+29684536 | None:intergenic |
| TTCCCTCAACGACTCCATTG+GGG | 0.610483 | 7_4:-29686188 | None:intergenic |
| TTGTCTACCACACCCATGAA+AGG | 0.611440 | 7_4:+29684706 | Msa1149000:CDS |
| TCTGGGAACACAGAGAGGAA+TGG | 0.613084 | 7_4:+29685303 | Msa1149000:CDS |
| GGTTACTGTATGTTCTACCA+TGG | 0.616125 | 7_4:+29684660 | Msa1149000:CDS |
| TTCATGTCCTGAAAACAGAG+TGG | 0.637299 | 7_4:+29685820 | Msa1149000:CDS |
| AAATTTAGACAAGTACGAGT+CGG | 0.642137 | 7_4:+29686028 | Msa1149000:CDS |
| ACCCATCTGGGAACACAGAG+AGG | 0.643127 | 7_4:+29685298 | Msa1149000:CDS |
| CATGTCCTGAAAACAGAGTG+GGG | 0.661266 | 7_4:+29685822 | Msa1149000:CDS |
| ATGGGTGTGGTAGACAACAA+TGG | 0.666956 | 7_4:-29684700 | None:intergenic |
| GCGCCAAAGACCAAATATGT+GGG | 0.671293 | 7_4:+29686295 | Msa1149000:CDS |
| ACCGAAACACACATAACGCG+AGG | 0.674205 | 7_4:+29686509 | Msa1149000:three_prime_UTR |
| AACACAGAGAGGAATGGACA+TGG | 0.678970 | 7_4:+29685309 | Msa1149000:CDS |
| TTGCCAAATAAATAGAAACG+TGG | 0.730686 | 7_4:-29685332 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAACTAATTAATGAA+GGG | - | chr7_4:29684605-29684624 | None:intergenic | 10.0% |
| !! | TAAAAATAACTAATTAATGA+AGG | - | chr7_4:29684606-29684625 | None:intergenic | 10.0% |
| !!! | TAATTAGTTATTTTTACTTA+AGG | + | chr7_4:29684610-29684629 | Msa1149000:five_prime_UTR | 10.0% |
| !!! | AATTAGTTATTTTTACTTAA+GGG | + | chr7_4:29684611-29684630 | Msa1149000:five_prime_UTR | 10.0% |
| !!! | TATGTATGATATAAATTTTA+AGG | + | chr7_4:29685507-29685526 | Msa1149000:intron | 10.0% |
| !!! | TAATTTTTTAATATCTTTTC+AGG | + | chr7_4:29685713-29685732 | Msa1149000:intron | 10.0% |
| !! | AAAAATAACTAATTAATGAA+GGG | - | chr7_4:29684605-29684624 | None:intergenic | 10.0% |
| !! | TAAAAATAACTAATTAATGA+AGG | - | chr7_4:29684606-29684625 | None:intergenic | 10.0% |
| !!! | TAATTAGTTATTTTTACTTA+AGG | + | chr7_4:29684610-29684629 | Msa1149000:five_prime_UTR | 10.0% |
| !!! | AATTAGTTATTTTTACTTAA+GGG | + | chr7_4:29684611-29684630 | Msa1149000:five_prime_UTR | 10.0% |
| !!! | TATGTATGATATAAATTTTA+AGG | + | chr7_4:29685507-29685526 | Msa1149000:intron | 10.0% |
| !!! | TAATTTTTTAATATCTTTTC+AGG | + | chr7_4:29685713-29685732 | Msa1149000:intron | 10.0% |
| !!! | TTTATATTGATATCTTTTAC+AGG | + | chr7_4:29684983-29685002 | Msa1149000:intron | 15.0% |
| !!! | TATGATATAAATTTTAAGGT+TGG | + | chr7_4:29685511-29685530 | Msa1149000:intron | 15.0% |
| !! | TTTATAAGTAGTATAAGATA+AGG | - | chr7_4:29685763-29685782 | None:intergenic | 15.0% |
| !! | AGCTAAAAATAATGAAATAT+GGG | - | chr7_4:29686220-29686239 | None:intergenic | 15.0% |
| !!! | TTTATATTGATATCTTTTAC+AGG | + | chr7_4:29684983-29685002 | Msa1149000:intron | 15.0% |
| !!! | TATGATATAAATTTTAAGGT+TGG | + | chr7_4:29685511-29685530 | Msa1149000:intron | 15.0% |
| !! | TTTATAAGTAGTATAAGATA+AGG | - | chr7_4:29685763-29685782 | None:intergenic | 15.0% |
| !! | AGCTAAAAATAATGAAATAT+GGG | - | chr7_4:29686220-29686239 | None:intergenic | 15.0% |
| !! | AGATTAGATACATTAAAAGA+AGG | + | chr7_4:29684920-29684939 | Msa1149000:intron | 20.0% |
| !! | AATGGTATGTAAATGTATTT+AGG | + | chr7_4:29685116-29685135 | Msa1149000:intron | 20.0% |
| !! | AATCAATAGGTAATGAAATT+GGG | - | chr7_4:29685365-29685384 | None:intergenic | 20.0% |
| !!! | AATTTCATTACCTATTGATT+GGG | + | chr7_4:29685365-29685384 | Msa1149000:CDS | 20.0% |
| !! | ATATGCTGAAAAGTTTATAA+TGG | - | chr7_4:29685400-29685419 | None:intergenic | 20.0% |
| !! | ATGATATTTAATCACTAACT+TGG | - | chr7_4:29685629-29685648 | None:intergenic | 20.0% |
| !! | GAGCTAAAAATAATGAAATA+TGG | - | chr7_4:29686221-29686240 | None:intergenic | 20.0% |
| !!! | TATTTCATTATTTTTAGCTC+TGG | + | chr7_4:29686221-29686240 | Msa1149000:CDS | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+TGG | - | chr7_4:29686424-29686443 | None:intergenic | 20.0% |
| !! | AAAAATTAAGAGATTATCAC+AGG | - | chr7_4:29686570-29686589 | None:intergenic | 20.0% |
| !! | AGATTAGATACATTAAAAGA+AGG | + | chr7_4:29684920-29684939 | Msa1149000:intron | 20.0% |
| !! | AATGGTATGTAAATGTATTT+AGG | + | chr7_4:29685116-29685135 | Msa1149000:intron | 20.0% |
| !! | AATCAATAGGTAATGAAATT+GGG | - | chr7_4:29685365-29685384 | None:intergenic | 20.0% |
| !!! | AATTTCATTACCTATTGATT+GGG | + | chr7_4:29685365-29685384 | Msa1149000:CDS | 20.0% |
| !! | ATATGCTGAAAAGTTTATAA+TGG | - | chr7_4:29685400-29685419 | None:intergenic | 20.0% |
| !! | ATGATATTTAATCACTAACT+TGG | - | chr7_4:29685629-29685648 | None:intergenic | 20.0% |
| !! | GAGCTAAAAATAATGAAATA+TGG | - | chr7_4:29686221-29686240 | None:intergenic | 20.0% |
| !!! | TATTTCATTATTTTTAGCTC+TGG | + | chr7_4:29686221-29686240 | Msa1149000:CDS | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+TGG | - | chr7_4:29686424-29686443 | None:intergenic | 20.0% |
| !! | AAAAATTAAGAGATTATCAC+AGG | - | chr7_4:29686570-29686589 | None:intergenic | 20.0% |
| !!! | AATTAATGAAGGGTTTTATC+TGG | - | chr7_4:29684595-29684614 | None:intergenic | 25.0% |
| ! | TTATATGAATCACCTTTCAT+GGG | - | chr7_4:29684721-29684740 | None:intergenic | 25.0% |
| ! | TTTATATGAATCACCTTTCA+TGG | - | chr7_4:29684722-29684741 | None:intergenic | 25.0% |
| ! | TGATTCATATAAACAACAGT+TGG | + | chr7_4:29684729-29684748 | Msa1149000:intron | 25.0% |
| !! | CTTTTCCGATTTAGTATTTA+GGG | - | chr7_4:29684873-29684892 | None:intergenic | 25.0% |
| !! | ACTTTTCCGATTTAGTATTT+AGG | - | chr7_4:29684874-29684893 | None:intergenic | 25.0% |
| ! | TTAGATACATTAAAAGAAGG+TGG | + | chr7_4:29684923-29684942 | Msa1149000:intron | 25.0% |
| !! | TATTGATATCTTTTACAGGA+AGG | + | chr7_4:29684987-29685006 | Msa1149000:intron | 25.0% |
| !! | ATTTTGAATGTGTAATGACT+TGG | - | chr7_4:29685022-29685041 | None:intergenic | 25.0% |
| ! | TGTATTTAGGCCTTAAATAA+TGG | + | chr7_4:29685129-29685148 | Msa1149000:intron | 25.0% |
| ! | TTCTATTTATTTGGCAATCA+TGG | + | chr7_4:29685338-29685357 | Msa1149000:CDS | 25.0% |
| ! | CAATCAATAGGTAATGAAAT+TGG | - | chr7_4:29685366-29685385 | None:intergenic | 25.0% |
| ! | CAATTTCATTACCTATTGAT+TGG | + | chr7_4:29685364-29685383 | Msa1149000:CDS | 25.0% |
| ! | GTTATATATTCTGTTAGGTT+TGG | + | chr7_4:29685533-29685552 | Msa1149000:intron | 25.0% |
| !!! | TTGACATGAGCTATTTTATA+GGG | + | chr7_4:29685668-29685687 | Msa1149000:intron | 25.0% |
| !! | TTGGATGATAATTGTGTTTT+TGG | + | chr7_4:29685900-29685919 | Msa1149000:CDS | 25.0% |
| ! | AATAGTGACAGGATTTATTA+TGG | - | chr7_4:29685973-29685992 | None:intergenic | 25.0% |
| !! | GTAACAAATTTTATGTTCTC+TGG | + | chr7_4:29686133-29686152 | Msa1149000:intron | 25.0% |
| !!! | TCTGGCTATTTTTTTTTAAC+AGG | + | chr7_4:29686151-29686170 | Msa1149000:intron | 25.0% |
| !! | TTTTCTCAAATTATTAGTGG+CGG | - | chr7_4:29686421-29686440 | None:intergenic | 25.0% |
| !!! | AATTAATGAAGGGTTTTATC+TGG | - | chr7_4:29684595-29684614 | None:intergenic | 25.0% |
| ! | TTATATGAATCACCTTTCAT+GGG | - | chr7_4:29684721-29684740 | None:intergenic | 25.0% |
| ! | TTTATATGAATCACCTTTCA+TGG | - | chr7_4:29684722-29684741 | None:intergenic | 25.0% |
| ! | TGATTCATATAAACAACAGT+TGG | + | chr7_4:29684729-29684748 | Msa1149000:intron | 25.0% |
| !! | CTTTTCCGATTTAGTATTTA+GGG | - | chr7_4:29684873-29684892 | None:intergenic | 25.0% |
| !! | ACTTTTCCGATTTAGTATTT+AGG | - | chr7_4:29684874-29684893 | None:intergenic | 25.0% |
| ! | TTAGATACATTAAAAGAAGG+TGG | + | chr7_4:29684923-29684942 | Msa1149000:intron | 25.0% |
| !! | TATTGATATCTTTTACAGGA+AGG | + | chr7_4:29684987-29685006 | Msa1149000:intron | 25.0% |
| !! | ATTTTGAATGTGTAATGACT+TGG | - | chr7_4:29685022-29685041 | None:intergenic | 25.0% |
| ! | TGTATTTAGGCCTTAAATAA+TGG | + | chr7_4:29685129-29685148 | Msa1149000:intron | 25.0% |
| ! | TTCTATTTATTTGGCAATCA+TGG | + | chr7_4:29685338-29685357 | Msa1149000:CDS | 25.0% |
| ! | CAATCAATAGGTAATGAAAT+TGG | - | chr7_4:29685366-29685385 | None:intergenic | 25.0% |
| ! | CAATTTCATTACCTATTGAT+TGG | + | chr7_4:29685364-29685383 | Msa1149000:CDS | 25.0% |
| ! | GTTATATATTCTGTTAGGTT+TGG | + | chr7_4:29685533-29685552 | Msa1149000:intron | 25.0% |
| !!! | TTGACATGAGCTATTTTATA+GGG | + | chr7_4:29685668-29685687 | Msa1149000:intron | 25.0% |
| !! | TTGGATGATAATTGTGTTTT+TGG | + | chr7_4:29685900-29685919 | Msa1149000:CDS | 25.0% |
| ! | AATAGTGACAGGATTTATTA+TGG | - | chr7_4:29685973-29685992 | None:intergenic | 25.0% |
| !! | GTAACAAATTTTATGTTCTC+TGG | + | chr7_4:29686133-29686152 | Msa1149000:intron | 25.0% |
| !!! | TCTGGCTATTTTTTTTTAAC+AGG | + | chr7_4:29686151-29686170 | Msa1149000:intron | 25.0% |
| !! | TTTTCTCAAATTATTAGTGG+CGG | - | chr7_4:29686421-29686440 | None:intergenic | 25.0% |
| ! | TAACTAGTTCTTCATAGCAA+TGG | + | chr7_4:29684639-29684658 | Msa1149000:exon | 30.0% |
| ACAAACAGTATTCATATCCA+TGG | - | chr7_4:29684680-29684699 | None:intergenic | 30.0% | |
| TTTAGAAAACCATCTCTAGT+TGG | + | chr7_4:29684839-29684858 | Msa1149000:intron | 30.0% | |
| TTCTTGCTGACCATTATTTA+AGG | - | chr7_4:29685142-29685161 | None:intergenic | 30.0% | |
| TTGCCAAATAAATAGAAACG+TGG | - | chr7_4:29685335-29685354 | None:intergenic | 30.0% | |
| ! | GGTTGGTTATATATTCTGTT+AGG | + | chr7_4:29685528-29685547 | Msa1149000:intron | 30.0% |
| !! | CTTGACATGAGCTATTTTAT+AGG | + | chr7_4:29685667-29685686 | Msa1149000:intron | 30.0% |
| ! | GTGTCAATGTTGATGAAATT+TGG | - | chr7_4:29685852-29685871 | None:intergenic | 30.0% |
| ! | CCAACAAATATCCTTTTGTA+GGG | - | chr7_4:29685884-29685903 | None:intergenic | 30.0% |
| ! | TCCAACAAATATCCTTTTGT+AGG | - | chr7_4:29685885-29685904 | None:intergenic | 30.0% |
| AAATTTAGACAAGTACGAGT+CGG | + | chr7_4:29686028-29686047 | Msa1149000:CDS | 30.0% | |
| !! | TCTTATTACTAGCTTGTTGT+AGG | + | chr7_4:29686109-29686128 | Msa1149000:intron | 30.0% |
| ! | GAAAGTGTAAGTCCATATTT+AGG | + | chr7_4:29686331-29686350 | Msa1149000:CDS | 30.0% |
| AAAATTATGTGTTAGTACCC+AGG | + | chr7_4:29686604-29686623 | Msa1149000:three_prime_UTR | 30.0% | |
| ! | TAACTAGTTCTTCATAGCAA+TGG | + | chr7_4:29684639-29684658 | Msa1149000:exon | 30.0% |
| ACAAACAGTATTCATATCCA+TGG | - | chr7_4:29684680-29684699 | None:intergenic | 30.0% | |
| TTTAGAAAACCATCTCTAGT+TGG | + | chr7_4:29684839-29684858 | Msa1149000:intron | 30.0% | |
| TTCTTGCTGACCATTATTTA+AGG | - | chr7_4:29685142-29685161 | None:intergenic | 30.0% | |
| TTGCCAAATAAATAGAAACG+TGG | - | chr7_4:29685335-29685354 | None:intergenic | 30.0% | |
| ! | GGTTGGTTATATATTCTGTT+AGG | + | chr7_4:29685528-29685547 | Msa1149000:intron | 30.0% |
| !! | CTTGACATGAGCTATTTTAT+AGG | + | chr7_4:29685667-29685686 | Msa1149000:intron | 30.0% |
| ! | GTGTCAATGTTGATGAAATT+TGG | - | chr7_4:29685852-29685871 | None:intergenic | 30.0% |
| ! | CCAACAAATATCCTTTTGTA+GGG | - | chr7_4:29685884-29685903 | None:intergenic | 30.0% |
| ! | TCCAACAAATATCCTTTTGT+AGG | - | chr7_4:29685885-29685904 | None:intergenic | 30.0% |
| AAATTTAGACAAGTACGAGT+CGG | + | chr7_4:29686028-29686047 | Msa1149000:CDS | 30.0% | |
| !! | TCTTATTACTAGCTTGTTGT+AGG | + | chr7_4:29686109-29686128 | Msa1149000:intron | 30.0% |
| ! | GAAAGTGTAAGTCCATATTT+AGG | + | chr7_4:29686331-29686350 | Msa1149000:CDS | 30.0% |
| !! | AGGGTTTTATCTGGATTTTG+AGG | - | chr7_4:29684586-29684605 | None:intergenic | 35.0% |
| GCTTGCCCTAAATACTAAAT+CGG | + | chr7_4:29684865-29684884 | Msa1149000:intron | 35.0% | |
| ! | TTGAATGTGTAATGACTTGG+CGG | - | chr7_4:29685019-29685038 | None:intergenic | 35.0% |
| !! | TTCGGAGACACATTTTTCAA+TGG | - | chr7_4:29685074-29685093 | None:intergenic | 35.0% |
| TTAAACTTTCGTTCATGCGT+AGG | + | chr7_4:29685262-29685281 | Msa1149000:intron | 35.0% | |
| TGGCCACGTTTCTATTTATT+TGG | + | chr7_4:29685329-29685348 | Msa1149000:CDS | 35.0% | |
| GATGAATACGTTACAACTCA+AGG | + | chr7_4:29685432-29685451 | Msa1149000:CDS | 35.0% | |
| ACATTCAAAGACCCTACAAA+AGG | + | chr7_4:29685870-29685889 | Msa1149000:CDS | 35.0% | |
| CCCTACAAAAGGATATTTGT+TGG | + | chr7_4:29685881-29685900 | Msa1149000:CDS | 35.0% | |
| !!! | TAATTGTGTTTTTGGAGCTG+AGG | + | chr7_4:29685908-29685927 | Msa1149000:CDS | 35.0% |
| TTTGCAAAATTTCCAGCTGT+GGG | - | chr7_4:29685997-29686016 | None:intergenic | 35.0% | |
| ATTTGCAAAATTTCCAGCTG+TGG | - | chr7_4:29685998-29686017 | None:intergenic | 35.0% | |
| TTTATAGTCTCCAGCTACAA+AGG | - | chr7_4:29686057-29686076 | None:intergenic | 35.0% | |
| TTGTAGCTGGAGACTATAAA+TGG | + | chr7_4:29686057-29686076 | Msa1149000:CDS | 35.0% | |
| !! | CGAGAATTTTAGTGTCAGAT+GGG | - | chr7_4:29686260-29686279 | None:intergenic | 35.0% |
| !! | ACGAGAATTTTAGTGTCAGA+TGG | - | chr7_4:29686261-29686280 | None:intergenic | 35.0% |
| ATCTGACACTAAAATTCTCG+TGG | + | chr7_4:29686260-29686279 | Msa1149000:CDS | 35.0% | |
| ! | TTTCCCACATATTTGGTCTT+TGG | - | chr7_4:29686301-29686320 | None:intergenic | 35.0% |
| CAACATGTTTCCCACATATT+TGG | - | chr7_4:29686308-29686327 | None:intergenic | 35.0% | |
| CGCAGAAGATAACCTAAATA+TGG | - | chr7_4:29686346-29686365 | None:intergenic | 35.0% | |
| !! | AGGGTTTTATCTGGATTTTG+AGG | - | chr7_4:29684586-29684605 | None:intergenic | 35.0% |
| GCTTGCCCTAAATACTAAAT+CGG | + | chr7_4:29684865-29684884 | Msa1149000:intron | 35.0% | |
| ! | TTGAATGTGTAATGACTTGG+CGG | - | chr7_4:29685019-29685038 | None:intergenic | 35.0% |
| !! | TTCGGAGACACATTTTTCAA+TGG | - | chr7_4:29685074-29685093 | None:intergenic | 35.0% |
| TTAAACTTTCGTTCATGCGT+AGG | + | chr7_4:29685262-29685281 | Msa1149000:intron | 35.0% | |
| TGGCCACGTTTCTATTTATT+TGG | + | chr7_4:29685329-29685348 | Msa1149000:CDS | 35.0% | |
| GATGAATACGTTACAACTCA+AGG | + | chr7_4:29685432-29685451 | Msa1149000:CDS | 35.0% | |
| ACATTCAAAGACCCTACAAA+AGG | + | chr7_4:29685870-29685889 | Msa1149000:CDS | 35.0% | |
| CCCTACAAAAGGATATTTGT+TGG | + | chr7_4:29685881-29685900 | Msa1149000:CDS | 35.0% | |
| !!! | TAATTGTGTTTTTGGAGCTG+AGG | + | chr7_4:29685908-29685927 | Msa1149000:CDS | 35.0% |
| TTTGCAAAATTTCCAGCTGT+GGG | - | chr7_4:29685997-29686016 | None:intergenic | 35.0% | |
| ATTTGCAAAATTTCCAGCTG+TGG | - | chr7_4:29685998-29686017 | None:intergenic | 35.0% | |
| TTTATAGTCTCCAGCTACAA+AGG | - | chr7_4:29686057-29686076 | None:intergenic | 35.0% | |
| TTGTAGCTGGAGACTATAAA+TGG | + | chr7_4:29686057-29686076 | Msa1149000:CDS | 35.0% | |
| !! | CGAGAATTTTAGTGTCAGAT+GGG | - | chr7_4:29686260-29686279 | None:intergenic | 35.0% |
| !! | ACGAGAATTTTAGTGTCAGA+TGG | - | chr7_4:29686261-29686280 | None:intergenic | 35.0% |
| ATCTGACACTAAAATTCTCG+TGG | + | chr7_4:29686260-29686279 | Msa1149000:CDS | 35.0% | |
| ! | TTTCCCACATATTTGGTCTT+TGG | - | chr7_4:29686301-29686320 | None:intergenic | 35.0% |
| CAACATGTTTCCCACATATT+TGG | - | chr7_4:29686308-29686327 | None:intergenic | 35.0% | |
| CGCAGAAGATAACCTAAATA+TGG | - | chr7_4:29686346-29686365 | None:intergenic | 35.0% | |
| GGTTACTGTATGTTCTACCA+TGG | + | chr7_4:29684660-29684679 | Msa1149000:CDS | 40.0% | |
| GTCCTTCTCTTTGCTTTCTA+AGG | + | chr7_4:29685045-29685064 | Msa1149000:CDS | 40.0% | |
| !! | GGAGACACATTTTTCAATGG+AGG | - | chr7_4:29685071-29685090 | None:intergenic | 40.0% |
| TTGAAGCTGGAGGTTACAAA+TGG | + | chr7_4:29685098-29685117 | Msa1149000:CDS | 40.0% | |
| AGCTTGTCTATATACCCATC+TGG | + | chr7_4:29685285-29685304 | Msa1149000:CDS | 40.0% | |
| GCTTGTCTATATACCCATCT+GGG | + | chr7_4:29685286-29685305 | Msa1149000:CDS | 40.0% | |
| ! | GCATTGATCTCCCAATCAAT+AGG | - | chr7_4:29685378-29685397 | None:intergenic | 40.0% |
| AACATGCAGATGCATCTGTT+AGG | + | chr7_4:29685793-29685812 | Msa1149000:intron | 40.0% | |
| TTCATGTCCTGAAAACAGAG+TGG | + | chr7_4:29685820-29685839 | Msa1149000:CDS | 40.0% | |
| TCATGTCCTGAAAACAGAGT+GGG | + | chr7_4:29685821-29685840 | Msa1149000:CDS | 40.0% | |
| GTTGTGAAGACTGCCAATAA+AGG | + | chr7_4:29685936-29685955 | Msa1149000:CDS | 40.0% | |
| GGATAAGCAATCGCCTTTAT+TGG | - | chr7_4:29685952-29685971 | None:intergenic | 40.0% | |
| ! | AAGCTCCTTTTATACCCCAA+TGG | + | chr7_4:29686174-29686193 | Msa1149000:CDS | 40.0% |
| ATGGATACGAACACAGACAT+TGG | + | chr7_4:29686370-29686389 | Msa1149000:CDS | 40.0% | |
| TCTCAAATTATTAGTGGCGG+CGG | - | chr7_4:29686418-29686437 | None:intergenic | 40.0% | |
| TATACGTGTCTTTGTCGTGT+CGG | + | chr7_4:29686460-29686479 | Msa1149000:three_prime_UTR | 40.0% | |
| !! | ATAACCTTCACTGATTCCCT+GGG | - | chr7_4:29684543-29684562 | None:intergenic | 40.0% |
| !! | TATAACCTTCACTGATTCCC+TGG | - | chr7_4:29684544-29684563 | None:intergenic | 40.0% |
| GGTTACTGTATGTTCTACCA+TGG | + | chr7_4:29684660-29684679 | Msa1149000:CDS | 40.0% | |
| GTCCTTCTCTTTGCTTTCTA+AGG | + | chr7_4:29685045-29685064 | Msa1149000:CDS | 40.0% | |
| !! | GGAGACACATTTTTCAATGG+AGG | - | chr7_4:29685071-29685090 | None:intergenic | 40.0% |
| TTGAAGCTGGAGGTTACAAA+TGG | + | chr7_4:29685098-29685117 | Msa1149000:CDS | 40.0% | |
| AGCTTGTCTATATACCCATC+TGG | + | chr7_4:29685285-29685304 | Msa1149000:CDS | 40.0% | |
| GCTTGTCTATATACCCATCT+GGG | + | chr7_4:29685286-29685305 | Msa1149000:CDS | 40.0% | |
| ! | GCATTGATCTCCCAATCAAT+AGG | - | chr7_4:29685378-29685397 | None:intergenic | 40.0% |
| AACATGCAGATGCATCTGTT+AGG | + | chr7_4:29685793-29685812 | Msa1149000:intron | 40.0% | |
| TTCATGTCCTGAAAACAGAG+TGG | + | chr7_4:29685820-29685839 | Msa1149000:CDS | 40.0% | |
| TCATGTCCTGAAAACAGAGT+GGG | + | chr7_4:29685821-29685840 | Msa1149000:CDS | 40.0% | |
| GTTGTGAAGACTGCCAATAA+AGG | + | chr7_4:29685936-29685955 | Msa1149000:CDS | 40.0% | |
| GGATAAGCAATCGCCTTTAT+TGG | - | chr7_4:29685952-29685971 | None:intergenic | 40.0% | |
| ! | AAGCTCCTTTTATACCCCAA+TGG | + | chr7_4:29686174-29686193 | Msa1149000:CDS | 40.0% |
| ATGGATACGAACACAGACAT+TGG | + | chr7_4:29686370-29686389 | Msa1149000:CDS | 40.0% | |
| TCTCAAATTATTAGTGGCGG+CGG | - | chr7_4:29686418-29686437 | None:intergenic | 40.0% | |
| TATACGTGTCTTTGTCGTGT+CGG | + | chr7_4:29686460-29686479 | Msa1149000:three_prime_UTR | 40.0% | |
| ATGGGTGTGGTAGACAACAA+TGG | - | chr7_4:29684703-29684722 | None:intergenic | 45.0% | |
| TTGTCTACCACACCCATGAA+AGG | + | chr7_4:29684706-29684725 | Msa1149000:CDS | 45.0% | |
| TGAATCACCTTTCATGGGTG+TGG | - | chr7_4:29684716-29684735 | None:intergenic | 45.0% | |
| GGCCTTAGAAAGCAAAGAGA+AGG | - | chr7_4:29685050-29685069 | None:intergenic | 45.0% | |
| ACCTCCAGCTTCAAACTCTT+CGG | - | chr7_4:29685092-29685111 | None:intergenic | 45.0% | |
| AACACAGAGAGGAATGGACA+TGG | + | chr7_4:29685309-29685328 | Msa1149000:CDS | 45.0% | |
| CATGTCCTGAAAACAGAGTG+GGG | + | chr7_4:29685822-29685841 | Msa1149000:CDS | 45.0% | |
| ! | GAATACCCCACTCTGTTTTC+AGG | - | chr7_4:29685830-29685849 | None:intergenic | 45.0% |
| CGACTCCATTGGGGTATAAA+AGG | - | chr7_4:29686182-29686201 | None:intergenic | 45.0% | |
| TTTCCCTCAACGACTCCATT+GGG | - | chr7_4:29686192-29686211 | None:intergenic | 45.0% | |
| AATGGAGTCGTTGAGGGAAA+GGG | + | chr7_4:29686192-29686211 | Msa1149000:CDS | 45.0% | |
| GCGCCAAAGACCAAATATGT+GGG | + | chr7_4:29686295-29686314 | Msa1149000:CDS | 45.0% | |
| AGGTTATCTTCTGCGAAGCA+TGG | + | chr7_4:29686351-29686370 | Msa1149000:CDS | 45.0% | |
| TCCTCGCGTTATGTGTGTTT+CGG | - | chr7_4:29686513-29686532 | None:intergenic | 45.0% | |
| ATGGGTGTGGTAGACAACAA+TGG | - | chr7_4:29684703-29684722 | None:intergenic | 45.0% | |
| TTGTCTACCACACCCATGAA+AGG | + | chr7_4:29684706-29684725 | Msa1149000:CDS | 45.0% | |
| TGAATCACCTTTCATGGGTG+TGG | - | chr7_4:29684716-29684735 | None:intergenic | 45.0% | |
| GGCCTTAGAAAGCAAAGAGA+AGG | - | chr7_4:29685050-29685069 | None:intergenic | 45.0% | |
| ACCTCCAGCTTCAAACTCTT+CGG | - | chr7_4:29685092-29685111 | None:intergenic | 45.0% | |
| AACACAGAGAGGAATGGACA+TGG | + | chr7_4:29685309-29685328 | Msa1149000:CDS | 45.0% | |
| CATGTCCTGAAAACAGAGTG+GGG | + | chr7_4:29685822-29685841 | Msa1149000:CDS | 45.0% | |
| ! | GAATACCCCACTCTGTTTTC+AGG | - | chr7_4:29685830-29685849 | None:intergenic | 45.0% |
| CGACTCCATTGGGGTATAAA+AGG | - | chr7_4:29686182-29686201 | None:intergenic | 45.0% | |
| TTTCCCTCAACGACTCCATT+GGG | - | chr7_4:29686192-29686211 | None:intergenic | 45.0% | |
| AATGGAGTCGTTGAGGGAAA+GGG | + | chr7_4:29686192-29686211 | Msa1149000:CDS | 45.0% | |
| GCGCCAAAGACCAAATATGT+GGG | + | chr7_4:29686295-29686314 | Msa1149000:CDS | 45.0% | |
| AGGTTATCTTCTGCGAAGCA+TGG | + | chr7_4:29686351-29686370 | Msa1149000:CDS | 45.0% | |
| TCCTCGCGTTATGTGTGTTT+CGG | - | chr7_4:29686513-29686532 | None:intergenic | 45.0% | |
| GCAAGCACACCAACTAGAGA+TGG | - | chr7_4:29684851-29684870 | None:intergenic | 50.0% | |
| ! | GTCTCCGAAGAGTTTGAAGC+TGG | + | chr7_4:29685085-29685104 | Msa1149000:CDS | 50.0% |
| ! | TCCGAAGAGTTTGAAGCTGG+AGG | + | chr7_4:29685088-29685107 | Msa1149000:CDS | 50.0% |
| TCCTCTCTGTGTTCCCAGAT+GGG | - | chr7_4:29685302-29685321 | None:intergenic | 50.0% | |
| TTCCTCTCTGTGTTCCCAGA+TGG | - | chr7_4:29685303-29685322 | None:intergenic | 50.0% | |
| TCTGGGAACACAGAGAGGAA+TGG | + | chr7_4:29685303-29685322 | Msa1149000:CDS | 50.0% | |
| CAGCTGTGGGAAATAGTGAC+AGG | - | chr7_4:29685984-29686003 | None:intergenic | 50.0% | |
| CTGTCACTATTTCCCACAGC+TGG | + | chr7_4:29685982-29686001 | Msa1149000:CDS | 50.0% | |
| GAGTCGGAATCCTTTGTAGC+TGG | + | chr7_4:29686044-29686063 | Msa1149000:CDS | 50.0% | |
| ATACCCCAATGGAGTCGTTG+AGG | + | chr7_4:29686185-29686204 | Msa1149000:CDS | 50.0% | |
| TACCCCAATGGAGTCGTTGA+GGG | + | chr7_4:29686186-29686205 | Msa1149000:CDS | 50.0% | |
| TTCCCTCAACGACTCCATTG+GGG | - | chr7_4:29686191-29686210 | None:intergenic | 50.0% | |
| CTTTCCCTCAACGACTCCAT+TGG | - | chr7_4:29686193-29686212 | None:intergenic | 50.0% | |
| CAATGGAGTCGTTGAGGGAA+AGG | + | chr7_4:29686191-29686210 | Msa1149000:CDS | 50.0% | |
| CGCGCCAAAGACCAAATATG+TGG | + | chr7_4:29686294-29686313 | Msa1149000:CDS | 50.0% | |
| ACCGAAACACACATAACGCG+AGG | + | chr7_4:29686509-29686528 | Msa1149000:three_prime_UTR | 50.0% | |
| GCAAGCACACCAACTAGAGA+TGG | - | chr7_4:29684851-29684870 | None:intergenic | 50.0% | |
| ! | GTCTCCGAAGAGTTTGAAGC+TGG | + | chr7_4:29685085-29685104 | Msa1149000:CDS | 50.0% |
| ! | TCCGAAGAGTTTGAAGCTGG+AGG | + | chr7_4:29685088-29685107 | Msa1149000:CDS | 50.0% |
| TCCTCTCTGTGTTCCCAGAT+GGG | - | chr7_4:29685302-29685321 | None:intergenic | 50.0% | |
| TTCCTCTCTGTGTTCCCAGA+TGG | - | chr7_4:29685303-29685322 | None:intergenic | 50.0% | |
| TCTGGGAACACAGAGAGGAA+TGG | + | chr7_4:29685303-29685322 | Msa1149000:CDS | 50.0% | |
| CAGCTGTGGGAAATAGTGAC+AGG | - | chr7_4:29685984-29686003 | None:intergenic | 50.0% | |
| CTGTCACTATTTCCCACAGC+TGG | + | chr7_4:29685982-29686001 | Msa1149000:CDS | 50.0% | |
| GAGTCGGAATCCTTTGTAGC+TGG | + | chr7_4:29686044-29686063 | Msa1149000:CDS | 50.0% | |
| ATACCCCAATGGAGTCGTTG+AGG | + | chr7_4:29686185-29686204 | Msa1149000:CDS | 50.0% | |
| TACCCCAATGGAGTCGTTGA+GGG | + | chr7_4:29686186-29686205 | Msa1149000:CDS | 50.0% | |
| TTCCCTCAACGACTCCATTG+GGG | - | chr7_4:29686191-29686210 | None:intergenic | 50.0% | |
| CTTTCCCTCAACGACTCCAT+TGG | - | chr7_4:29686193-29686212 | None:intergenic | 50.0% | |
| CAATGGAGTCGTTGAGGGAA+AGG | + | chr7_4:29686191-29686210 | Msa1149000:CDS | 50.0% | |
| CGCGCCAAAGACCAAATATG+TGG | + | chr7_4:29686294-29686313 | Msa1149000:CDS | 50.0% | |
| ACCGAAACACACATAACGCG+AGG | + | chr7_4:29686509-29686528 | Msa1149000:three_prime_UTR | 50.0% | |
| ACCCATCTGGGAACACAGAG+AGG | + | chr7_4:29685298-29685317 | Msa1149000:CDS | 55.0% | |
| !! | ACGCGAGGAGTGTTCGTGAT+AGG | + | chr7_4:29686524-29686543 | Msa1149000:three_prime_UTR | 55.0% |
| ACCCATCTGGGAACACAGAG+AGG | + | chr7_4:29685298-29685317 | Msa1149000:CDS | 55.0% | |
| !! | ACGCGAGGAGTGTTCGTGAT+AGG | + | chr7_4:29686524-29686543 | Msa1149000:three_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 29684543 | 29686623 | 29684543 | ID=Msa1149000;Name=Msa1149000 |
| chr7_4 | mRNA | 29684543 | 29686623 | 29684543 | ID=Msa1149000-mRNA-1;Parent=Msa1149000;Name=Msa1149000-mRNA-1;_AED=0.27;_eAED=0.27;_QI=115|1|1|1|1|1|5|165|305 |
| chr7_4 | exon | 29684543 | 29684727 | 29684543 | ID=Msa1149000-mRNA-1:exon:7310;Parent=Msa1149000-mRNA-1 |
| chr7_4 | exon | 29685005 | 29685119 | 29685005 | ID=Msa1149000-mRNA-1:exon:7311;Parent=Msa1149000-mRNA-1 |
| chr7_4 | exon | 29685284 | 29685453 | 29685284 | ID=Msa1149000-mRNA-1:exon:7312;Parent=Msa1149000-mRNA-1 |
| chr7_4 | exon | 29685802 | 29686078 | 29685802 | ID=Msa1149000-mRNA-1:exon:7313;Parent=Msa1149000-mRNA-1 |
| chr7_4 | exon | 29686173 | 29686623 | 29686173 | ID=Msa1149000-mRNA-1:exon:7314;Parent=Msa1149000-mRNA-1 |
| chr7_4 | five_prime_UTR | 29684543 | 29684657 | 29684543 | ID=Msa1149000-mRNA-1:five_prime_utr;Parent=Msa1149000-mRNA-1 |
| chr7_4 | CDS | 29684658 | 29684727 | 29684658 | ID=Msa1149000-mRNA-1:cds;Parent=Msa1149000-mRNA-1 |
| chr7_4 | CDS | 29685005 | 29685119 | 29685005 | ID=Msa1149000-mRNA-1:cds;Parent=Msa1149000-mRNA-1 |
| chr7_4 | CDS | 29685284 | 29685453 | 29685284 | ID=Msa1149000-mRNA-1:cds;Parent=Msa1149000-mRNA-1 |
| chr7_4 | CDS | 29685802 | 29686078 | 29685802 | ID=Msa1149000-mRNA-1:cds;Parent=Msa1149000-mRNA-1 |
| chr7_4 | CDS | 29686173 | 29686458 | 29686173 | ID=Msa1149000-mRNA-1:cds;Parent=Msa1149000-mRNA-1 |
| chr7_4 | three_prime_UTR | 29686459 | 29686623 | 29686459 | ID=Msa1149000-mRNA-1:three_prime_utr;Parent=Msa1149000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
