AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1158630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1158630 MtrunA17_Chr7g0253321 99.010 202 2 0 1 202 1 202 3.53e-130 364
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1158630 AT3G03920.1 80.921 152 29 0 51 202 51 202 5.25e-66 202
Msa1158630 AT5G18180.1 83.962 106 16 1 51 156 38 142 3.80e-59 184

Find 105 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGACGTGGTGGTGGTTTC+AGG 0.152779 7_4:-48031411 Msa1158630:CDS
AAACTTTAACTTCGGGGTTT+AGG 0.207634 7_4:+48033179 None:intergenic
GGGAAAGTTGATGAAATATT+TGG 0.233909 7_4:-48032693 Msa1158630:CDS
AACTTTAACTTCGGGGTTTA+GGG 0.260157 7_4:+48033180 None:intergenic
GGCCGTGGAGGTGGTGGTTT+TGG 0.280477 7_4:-48031508 Msa1158630:CDS
CCACGGCCGCCACCTCTTGC+AGG 0.283854 7_4:+48033087 None:intergenic
TAGGGTTACAATTGAAGATT+TGG 0.295564 7_4:-48031302 Msa1158630:three_prime_UTR
GAGGACCTCTTCCACCCCTT+GGG 0.305063 7_4:+48031440 None:intergenic
CAGGGGAAGGGGCAGATTCT+AGG 0.306220 7_4:-48031392 Msa1158630:exon
GGAGGACCTCTTCCACCCCT+TGG 0.349525 7_4:+48031439 None:intergenic
TTACCATGGCAGGGTATGAT+AGG 0.350857 7_4:-48031200 Msa1158630:three_prime_UTR
CAACTAATATTACATGATAT+TGG 0.357777 7_4:+48031363 None:intergenic
ATCAAAAGCACAAGTTTAGA+TGG 0.362034 7_4:+48031158 None:intergenic
AGAGGTGGCGGCCGTGGTGG+TGG 0.384933 7_4:-48033081 Msa1158630:CDS
TAATCGTTTCGTTTGGATGA+TGG 0.386896 7_4:-48031331 Msa1158630:three_prime_UTR
GCTAGAGGCAAGAGCTTCCT+AGG 0.395733 7_4:+48032493 None:intergenic
CTGCAAAACATGACTCAGAT+TGG 0.398576 7_4:-48032714 Msa1158630:CDS
CCTGCAAGAGGTGGCGGCCG+TGG 0.400024 7_4:-48033087 Msa1158630:CDS
AGAGGTGGTGGCCGTGGAGG+TGG 0.402289 7_4:-48031484 Msa1158630:CDS
GGTGGTGGTTTCAGGGGAAG+GGG 0.406506 7_4:-48031403 Msa1158630:CDS
TATTTAACTTCTGAATTGAA+TGG 0.410114 7_4:-48031263 Msa1158630:three_prime_UTR
TGTACTTTAATCGTTTCGTT+TGG 0.416142 7_4:-48031338 Msa1158630:three_prime_UTR
CAGAGAGAAACTTTAACTTC+GGG 0.420751 7_4:+48033172 None:intergenic
AGAGGTGGAGGCCGTGGAGG+TGG 0.421064 7_4:-48031517 Msa1158630:CDS
AGCTGAGCTTCAACAATGGC+GGG 0.425235 7_4:+48033148 None:intergenic
TTTGGTAGAGGTGGTGGCCG+TGG 0.427705 7_4:-48031490 Msa1158630:CDS
GTTGCTACTTCATATGCATC+TGG 0.429953 7_4:-48032535 Msa1158630:CDS
GGTGGTAGAGGTGGAGGCCG+TGG 0.431868 7_4:-48031523 Msa1158630:CDS
GTGGTGGTGGTTTCAGGGGA+AGG 0.432062 7_4:-48031405 Msa1158630:CDS
TTCGGCGGTGGACGTGGTGG+TGG 0.435593 7_4:-48032982 Msa1158630:CDS
TATTGCAGGGGACAAGCATC+AGG 0.437663 7_4:-48031544 Msa1158630:intron
GGTGGAGGCCGTGGAGGTGG+TGG 0.442100 7_4:-48031514 Msa1158630:CDS
GCAGAGAGAAACTTTAACTT+CGG 0.446895 7_4:+48033171 None:intergenic
CCACCACCACGTCCACCTCT+TGG 0.448869 7_4:+48031418 None:intergenic
GGTGGTGGCCGTGGAGGTGG+TGG 0.449672 7_4:-48031481 Msa1158630:CDS
GGTCGATTCGGCGGTGGACG+TGG 0.450036 7_4:-48032988 Msa1158630:CDS
TACAATTGAAGATTTGGTGC+TGG 0.455766 7_4:-48031296 Msa1158630:three_prime_UTR
CACGGCCGCCACCTCTTGCA+GGG 0.459887 7_4:+48033088 None:intergenic
GGACGTGGTGGTGGTCGATT+CGG 0.462851 7_4:-48033000 Msa1158630:CDS
GGCGGTGGACGTGGTGGTGG+AGG 0.463762 7_4:-48032979 Msa1158630:CDS
TGGTGGTGGTTTCAGGGGAA+GGG 0.471183 7_4:-48031404 Msa1158630:CDS
TGCAAAACATGACTCAGATT+GGG 0.474986 7_4:-48032713 Msa1158630:CDS
GGTGGACGTGGTGGTGGAGG+TGG 0.479988 7_4:-48032976 Msa1158630:CDS
TGGACGTGGTGGTGGTTTCA+GGG 0.482520 7_4:-48031410 Msa1158630:CDS
CCAAGAGGTGGACGTGGTGG+TGG 0.483436 7_4:-48031418 Msa1158630:CDS
GGACCTCCCTCCGAAGTTGT+AGG 0.483894 7_4:-48032940 Msa1158630:intron
CCAGAGTGATGGAAGTAGGT+TGG 0.494029 7_4:+48031119 None:intergenic
AGGACCTCTTCCACCCCTTG+GGG 0.496542 7_4:+48031441 None:intergenic
TTTGGATGATGGATCACATA+GGG 0.505820 7_4:-48031320 Msa1158630:three_prime_UTR
GGCCGTGGTGGTGGATTCAG+AGG 0.507562 7_4:-48033072 Msa1158630:CDS
GAAACTCACAGATTCATTGA+TGG 0.508035 7_4:+48032668 None:intergenic
TGTTATCAACTTACCATGGC+AGG 0.511854 7_4:-48031210 Msa1158630:three_prime_UTR
CCACCACGTCCACCTCTTGG+AGG 0.512302 7_4:+48031421 None:intergenic
GGACAAGCATCAGGTGGTAG+AGG 0.524486 7_4:-48031535 Msa1158630:CDS
TTTCTATTAAAATGATGGAA+GGG 0.525814 7_4:-48032561 Msa1158630:CDS
AGGGGAAGGGGCAGATTCTA+GGG 0.527082 7_4:-48031391 Msa1158630:exon
TACCCACGAACCTACAACTT+CGG 0.527744 7_4:+48032930 None:intergenic
GCATCAGGTGGTAGAGGTGG+AGG 0.530555 7_4:-48031529 Msa1158630:CDS
ACGTTTATCCATGCTTGTGA+AGG 0.531931 7_4:-48032795 Msa1158630:CDS
GCAAGAGGTGGCGGCCGTGG+TGG 0.532210 7_4:-48033084 Msa1158630:CDS
CAAGCATCAGGTGGTAGAGG+TGG 0.537811 7_4:-48031532 Msa1158630:CDS
GGATTCAGAGGTGGCCGAGA+TGG 0.541387 7_4:-48033060 Msa1158630:CDS
TTCAGAGGTGGCCGAGATGG+TGG 0.544595 7_4:-48033057 Msa1158630:CDS
GGATTCAGAGGTGGTCGTGA+TGG 0.545084 7_4:-48033036 Msa1158630:CDS
GGTGGTGGTCGATTCGGCGG+TGG 0.547225 7_4:-48032994 Msa1158630:CDS
CAGCATCTCCTTCACAAGCA+TGG 0.551580 7_4:+48032787 None:intergenic
GGACCTCTTCCACCCCTTGG+GGG 0.557362 7_4:+48031442 None:intergenic
GGTAGAGGTGGAGGCCGTGG+AGG 0.559108 7_4:-48031520 Msa1158630:CDS
AGAGGTGGTCGTGATGGAGG+AGG 0.560037 7_4:-48033030 Msa1158630:CDS
GGGTATGATAGGGTAGATTG+AGG 0.561919 7_4:-48031189 Msa1158630:three_prime_UTR
TTCAGAGGTGGTCGTGATGG+AGG 0.569077 7_4:-48033033 Msa1158630:CDS
ACGGCCGCCACCTCTTGCAG+GGG 0.569761 7_4:+48033089 None:intergenic
CACGAACCTACAACTTCGGA+GGG 0.573435 7_4:+48032934 None:intergenic
CGTGGTGGTGGTCGATTCGG+CGG 0.575172 7_4:-48032997 Msa1158630:CDS
AAACTCACAGATTCATTGAT+GGG 0.576692 7_4:+48032669 None:intergenic
GGCCGAGATGGTGGATTCAG+AGG 0.581009 7_4:-48033048 Msa1158630:CDS
GGTAGAGGTGGTGGCCGTGG+AGG 0.585512 7_4:-48031487 Msa1158630:CDS
GGAGGTGGATTTCGTGATGA+AGG 0.587672 7_4:-48032961 Msa1158630:CDS
GTGAGAACATACTTCGGCTG+AGG 0.591544 7_4:+48032460 None:intergenic
TACCCTATCATACCCTGCCA+TGG 0.595191 7_4:+48031197 None:intergenic
TACCATGGCAGGGTATGATA+GGG 0.595564 7_4:-48031199 Msa1158630:three_prime_UTR
CACGAAAACCACCACCTCCA+CGG 0.595827 7_4:+48031473 None:intergenic
GTTTGGATGATGGATCACAT+AGG 0.597503 7_4:-48031321 Msa1158630:three_prime_UTR
GAGCTGAGCTTCAACAATGG+CGG 0.600723 7_4:+48033147 None:intergenic
CGATTCGGCGGTGGACGTGG+TGG 0.605050 7_4:-48032985 Msa1158630:CDS
CCACGAACCTACAACTTCGG+AGG 0.605907 7_4:+48032933 None:intergenic
CCTCCAAGAGGTGGACGTGG+TGG 0.609010 7_4:-48031421 Msa1158630:CDS
TGTGAGCTGAGCTTCAACAA+TGG 0.617450 7_4:+48033144 None:intergenic
GGAAGAGGTCCTCCAAGAGG+TGG 0.617947 7_4:-48031430 Msa1158630:CDS
GGTCCTCCAAGAGGTGGACG+TGG 0.619296 7_4:-48031424 Msa1158630:CDS
CGAGATGGTGGATTCAGAGG+TGG 0.625804 7_4:-48033045 Msa1158630:CDS
CACCTCTGAATCCACCATCT+CGG 0.628054 7_4:+48033046 None:intergenic
CTAGAGGCAAGAGCTTCCTA+GGG 0.630481 7_4:+48032494 None:intergenic
TACCAAAACCACCACCTCCA+CGG 0.632501 7_4:+48031506 None:intergenic
GGACGTGGTGGTGGTTTCAG+GGG 0.633942 7_4:-48031409 Msa1158630:CDS
GTTATCAACTTACCATGGCA+GGG 0.637073 7_4:-48031209 Msa1158630:three_prime_UTR
CACATGTTATCAACTTACCA+TGG 0.637177 7_4:-48031214 Msa1158630:three_prime_UTR
TGAGGAAGAAATCTTGCTAG+AGG 0.638685 7_4:+48032478 None:intergenic
CGTGGTGGTGGATTCAGAGG+TGG 0.644993 7_4:-48033069 Msa1158630:CDS
GAACCTACAACTTCGGAGGG+AGG 0.658354 7_4:+48032937 None:intergenic
GCTGAGCTTCAACAATGGCG+GGG 0.660274 7_4:+48033149 None:intergenic
GGTGGAAGAGGTCCTCCAAG+AGG 0.663197 7_4:-48031433 Msa1158630:CDS
TGCAGGGGACAAGCATCAGG+TGG 0.672433 7_4:-48031541 Msa1158630:intron
AGAGAGAAACTTTAACTTCG+GGG 0.680645 7_4:+48033173 None:intergenic
CACCTCTGAATCCACCACCA+CGG 0.697043 7_4:+48033070 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTCATTTTTTCAGTAAAA+CGG + chr7_4:48032252-48032271 None:intergenic 15.0%
!!! CAAATATCAAAAACTAATTT+TGG + chr7_4:48032445-48032464 None:intergenic 15.0%
!!! TTTTTGATATTTGCTATATA+CGG - chr7_4:48032452-48032471 Msa1158630:intron 15.0%
!!! CTAATATCAAAAACTAATTT+TGG + chr7_4:48032571-48032590 None:intergenic 15.0%
!!! TATTCATTTTTTCAGTAAAA+CGG + chr7_4:48032252-48032271 None:intergenic 15.0%
!!! CAAATATCAAAAACTAATTT+TGG + chr7_4:48032445-48032464 None:intergenic 15.0%
!!! TTTTTGATATTTGCTATATA+CGG - chr7_4:48032452-48032471 Msa1158630:intron 15.0%
!!! CTAATATCAAAAACTAATTT+TGG + chr7_4:48032571-48032590 None:intergenic 15.0%
!!! AAAAAATGGAATTTTCTCAT+TGG + chr7_4:48031572-48031591 None:intergenic 20.0%
!!! TAAATAGGAGCATTAAAAAA+TGG + chr7_4:48031586-48031605 None:intergenic 20.0%
!!! TCTTATATGTTTTGTTGAAA+TGG - chr7_4:48031698-48031717 Msa1158630:intron 20.0%
!!! CTTATATGTTTTGTTGAAAT+GGG - chr7_4:48031699-48031718 Msa1158630:intron 20.0%
!!! GTACTTTTCTATTAAAATGA+TGG - chr7_4:48031755-48031774 Msa1158630:intron 20.0%
!!! TTTTCTATTAAAATGATGGA+AGG - chr7_4:48031759-48031778 Msa1158630:intron 20.0%
!!! TTTCTATTAAAATGATGGAA+GGG - chr7_4:48031760-48031779 Msa1158630:intron 20.0%
!! CATAAACAAGGAAATTAATT+AGG + chr7_4:48031966-48031985 None:intergenic 20.0%
!! TACATCAGATAAAAATAAGA+AGG - chr7_4:48032516-48032535 Msa1158630:CDS 20.0%
!! ACATCAGATAAAAATAAGAA+GGG - chr7_4:48032517-48032536 Msa1158630:CDS 20.0%
!!! ATTTTTTATTGGCTTTTGAA+AGG - chr7_4:48032714-48032733 Msa1158630:CDS 20.0%
!!! TTTTTTATTGGCTTTTGAAA+GGG - chr7_4:48032715-48032734 Msa1158630:CDS 20.0%
!! CAACTAATATTACATGATAT+TGG + chr7_4:48032961-48032980 None:intergenic 20.0%
!!! TATTTAACTTCTGAATTGAA+TGG - chr7_4:48033058-48033077 Msa1158630:CDS 20.0%
!!! AAAAAATGGAATTTTCTCAT+TGG + chr7_4:48031572-48031591 None:intergenic 20.0%
!!! TAAATAGGAGCATTAAAAAA+TGG + chr7_4:48031586-48031605 None:intergenic 20.0%
!!! TCTTATATGTTTTGTTGAAA+TGG - chr7_4:48031698-48031717 Msa1158630:intron 20.0%
!!! CTTATATGTTTTGTTGAAAT+GGG - chr7_4:48031699-48031718 Msa1158630:intron 20.0%
!!! GTACTTTTCTATTAAAATGA+TGG - chr7_4:48031755-48031774 Msa1158630:intron 20.0%
!!! TTTTCTATTAAAATGATGGA+AGG - chr7_4:48031759-48031778 Msa1158630:intron 20.0%
!!! TTTCTATTAAAATGATGGAA+GGG - chr7_4:48031760-48031779 Msa1158630:intron 20.0%
!! CATAAACAAGGAAATTAATT+AGG + chr7_4:48031966-48031985 None:intergenic 20.0%
!! TACATCAGATAAAAATAAGA+AGG - chr7_4:48032516-48032535 Msa1158630:CDS 20.0%
!! ACATCAGATAAAAATAAGAA+GGG - chr7_4:48032517-48032536 Msa1158630:CDS 20.0%
!!! ATTTTTTATTGGCTTTTGAA+AGG - chr7_4:48032714-48032733 Msa1158630:CDS 20.0%
!!! TTTTTTATTGGCTTTTGAAA+GGG - chr7_4:48032715-48032734 Msa1158630:CDS 20.0%
!! CAACTAATATTACATGATAT+TGG + chr7_4:48032961-48032980 None:intergenic 20.0%
!!! TATTTAACTTCTGAATTGAA+TGG - chr7_4:48033058-48033077 Msa1158630:CDS 20.0%
!! ACTTAGACAGGTTAATTTTA+AGG + chr7_4:48031889-48031908 None:intergenic 25.0%
!! ATTGTACAGTTGATGTTAAA+TGG - chr7_4:48031909-48031928 Msa1158630:intron 25.0%
!! TTGTACAGTTGATGTTAAAT+GGG - chr7_4:48031910-48031929 Msa1158630:intron 25.0%
!! AATTTCCTTGTTTATGTTTG+TGG - chr7_4:48031970-48031989 Msa1158630:intron 25.0%
! ATACTTGTTTGTTTGTTCAA+AGG - chr7_4:48032305-48032324 Msa1158630:intron 25.0%
! TCAAAGGATTCTTATTGTTA+TGG - chr7_4:48032321-48032340 Msa1158630:intron 25.0%
! ATCTGATGTAACATCAATTA+GGG + chr7_4:48032506-48032525 None:intergenic 25.0%
! TATCTGATGTAACATCAATT+AGG + chr7_4:48032507-48032526 None:intergenic 25.0%
! CATCAGATAAAAATAAGAAG+GGG - chr7_4:48032518-48032537 Msa1158630:CDS 25.0%
! CATACAAAACAATTAACACA+AGG + chr7_4:48032640-48032659 None:intergenic 25.0%
! AATAAATTGTTGTATGCAGT+TGG - chr7_4:48032678-48032697 Msa1158630:CDS 25.0%
!!! CTTTGCTTGGAATTTTTTAT+TGG - chr7_4:48032703-48032722 Msa1158630:CDS 25.0%
! AATTGACTGATTATTATTGC+AGG - chr7_4:48032763-48032782 Msa1158630:CDS 25.0%
! ATTGACTGATTATTATTGCA+GGG - chr7_4:48032764-48032783 Msa1158630:CDS 25.0%
!! ACTTAGACAGGTTAATTTTA+AGG + chr7_4:48031889-48031908 None:intergenic 25.0%
!! ATTGTACAGTTGATGTTAAA+TGG - chr7_4:48031909-48031928 Msa1158630:intron 25.0%
!! TTGTACAGTTGATGTTAAAT+GGG - chr7_4:48031910-48031929 Msa1158630:intron 25.0%
!! AATTTCCTTGTTTATGTTTG+TGG - chr7_4:48031970-48031989 Msa1158630:intron 25.0%
! ATACTTGTTTGTTTGTTCAA+AGG - chr7_4:48032305-48032324 Msa1158630:intron 25.0%
! TCAAAGGATTCTTATTGTTA+TGG - chr7_4:48032321-48032340 Msa1158630:intron 25.0%
! ATCTGATGTAACATCAATTA+GGG + chr7_4:48032506-48032525 None:intergenic 25.0%
! TATCTGATGTAACATCAATT+AGG + chr7_4:48032507-48032526 None:intergenic 25.0%
! CATCAGATAAAAATAAGAAG+GGG - chr7_4:48032518-48032537 Msa1158630:CDS 25.0%
! CATACAAAACAATTAACACA+AGG + chr7_4:48032640-48032659 None:intergenic 25.0%
! AATAAATTGTTGTATGCAGT+TGG - chr7_4:48032678-48032697 Msa1158630:CDS 25.0%
!!! CTTTGCTTGGAATTTTTTAT+TGG - chr7_4:48032703-48032722 Msa1158630:CDS 25.0%
! AATTGACTGATTATTATTGC+AGG - chr7_4:48032763-48032782 Msa1158630:CDS 25.0%
! ATTGACTGATTATTATTGCA+GGG - chr7_4:48032764-48032783 Msa1158630:CDS 25.0%
!! GTTTAATTTGATGTTTGCAG+AGG - chr7_4:48031498-48031517 Msa1158630:CDS 30.0%
! GTCATGTTTTGCAGATAAAT+AGG + chr7_4:48031601-48031620 None:intergenic 30.0%
!! GGGAAAGTTGATGAAATATT+TGG - chr7_4:48031628-48031647 Msa1158630:intron 30.0%
AAACTCACAGATTCATTGAT+GGG + chr7_4:48031655-48031674 None:intergenic 30.0%
CATTACCACAAACATAAACA+AGG + chr7_4:48031978-48031997 None:intergenic 30.0%
! CTATTTCTTGATTGCTATGT+TGG - chr7_4:48032024-48032043 Msa1158630:intron 30.0%
CAATTAACACAAGGAAATGT+GGG + chr7_4:48032631-48032650 None:intergenic 30.0%
ACAATTAACACAAGGAAATG+TGG + chr7_4:48032632-48032651 None:intergenic 30.0%
TTGACTGATTATTATTGCAG+GGG - chr7_4:48032765-48032784 Msa1158630:CDS 30.0%
TGTACTTTAATCGTTTCGTT+TGG - chr7_4:48032983-48033002 Msa1158630:CDS 30.0%
TAGGGTTACAATTGAAGATT+TGG - chr7_4:48033019-48033038 Msa1158630:CDS 30.0%
! ATCAAAAGCACAAGTTTAGA+TGG + chr7_4:48033166-48033185 None:intergenic 30.0%
!! TTTAGGGTTTTAGTGATGAA+TGG + chr7_4:48031128-48031147 None:intergenic 30.0%
!! GTTTAATTTGATGTTTGCAG+AGG - chr7_4:48031498-48031517 Msa1158630:CDS 30.0%
! GTCATGTTTTGCAGATAAAT+AGG + chr7_4:48031601-48031620 None:intergenic 30.0%
!! GGGAAAGTTGATGAAATATT+TGG - chr7_4:48031628-48031647 Msa1158630:intron 30.0%
AAACTCACAGATTCATTGAT+GGG + chr7_4:48031655-48031674 None:intergenic 30.0%
CATTACCACAAACATAAACA+AGG + chr7_4:48031978-48031997 None:intergenic 30.0%
! CTATTTCTTGATTGCTATGT+TGG - chr7_4:48032024-48032043 Msa1158630:intron 30.0%
CAATTAACACAAGGAAATGT+GGG + chr7_4:48032631-48032650 None:intergenic 30.0%
ACAATTAACACAAGGAAATG+TGG + chr7_4:48032632-48032651 None:intergenic 30.0%
TTGACTGATTATTATTGCAG+GGG - chr7_4:48032765-48032784 Msa1158630:CDS 30.0%
TGTACTTTAATCGTTTCGTT+TGG - chr7_4:48032983-48033002 Msa1158630:CDS 30.0%
TAGGGTTACAATTGAAGATT+TGG - chr7_4:48033019-48033038 Msa1158630:CDS 30.0%
! ATCAAAAGCACAAGTTTAGA+TGG + chr7_4:48033166-48033185 None:intergenic 30.0%
! AACTTTAACTTCGGGGTTTA+GGG + chr7_4:48031144-48031163 None:intergenic 35.0%
! AAACTTTAACTTCGGGGTTT+AGG + chr7_4:48031145-48031164 None:intergenic 35.0%
! AGAGAGAAACTTTAACTTCG+GGG + chr7_4:48031151-48031170 None:intergenic 35.0%
! CAGAGAGAAACTTTAACTTC+GGG + chr7_4:48031152-48031171 None:intergenic 35.0%
! GCAGAGAGAAACTTTAACTT+CGG + chr7_4:48031153-48031172 None:intergenic 35.0%
TGCAAAACATGACTCAGATT+GGG - chr7_4:48031608-48031627 Msa1158630:intron 35.0%
GAAACTCACAGATTCATTGA+TGG + chr7_4:48031656-48031675 None:intergenic 35.0%
ATCTGTGAGTTTCTCTTTGT+TGG - chr7_4:48031663-48031682 Msa1158630:intron 35.0%
! ACAAGTTTTACATTGACCCT+AGG - chr7_4:48031811-48031830 Msa1158630:intron 35.0%
CAACTGTACAATACTTAGAC+AGG + chr7_4:48031901-48031920 None:intergenic 35.0%
GCAGATTACATCAAGACAAA+AGG + chr7_4:48032278-48032297 None:intergenic 35.0%
AAAATTAGACATCTGCAGCA+TGG + chr7_4:48032367-48032386 None:intergenic 35.0%
!! TGTCTAATTTTGAGTGTGAG+AGG - chr7_4:48032376-48032395 Msa1158630:intron 35.0%
!! GTCTAATTTTGAGTGTGAGA+GGG - chr7_4:48032377-48032396 Msa1158630:intron 35.0%
!! TGAAAGGGTATTACAATCGA+TGG - chr7_4:48032730-48032749 Msa1158630:CDS 35.0%
TAATCGTTTCGTTTGGATGA+TGG - chr7_4:48032990-48033009 Msa1158630:CDS 35.0%
!! TTTGGATGATGGATCACATA+GGG - chr7_4:48033001-48033020 Msa1158630:CDS 35.0%
!! TACAATTGAAGATTTGGTGC+TGG - chr7_4:48033025-48033044 Msa1158630:CDS 35.0%
CACATGTTATCAACTTACCA+TGG - chr7_4:48033107-48033126 Msa1158630:exon 35.0%
! AACTTTAACTTCGGGGTTTA+GGG + chr7_4:48031144-48031163 None:intergenic 35.0%
! AAACTTTAACTTCGGGGTTT+AGG + chr7_4:48031145-48031164 None:intergenic 35.0%
! AGAGAGAAACTTTAACTTCG+GGG + chr7_4:48031151-48031170 None:intergenic 35.0%
! CAGAGAGAAACTTTAACTTC+GGG + chr7_4:48031152-48031171 None:intergenic 35.0%
! GCAGAGAGAAACTTTAACTT+CGG + chr7_4:48031153-48031172 None:intergenic 35.0%
TGCAAAACATGACTCAGATT+GGG - chr7_4:48031608-48031627 Msa1158630:intron 35.0%
GAAACTCACAGATTCATTGA+TGG + chr7_4:48031656-48031675 None:intergenic 35.0%
ATCTGTGAGTTTCTCTTTGT+TGG - chr7_4:48031663-48031682 Msa1158630:intron 35.0%
! ACAAGTTTTACATTGACCCT+AGG - chr7_4:48031811-48031830 Msa1158630:intron 35.0%
CAACTGTACAATACTTAGAC+AGG + chr7_4:48031901-48031920 None:intergenic 35.0%
GCAGATTACATCAAGACAAA+AGG + chr7_4:48032278-48032297 None:intergenic 35.0%
AAAATTAGACATCTGCAGCA+TGG + chr7_4:48032367-48032386 None:intergenic 35.0%
!! TGTCTAATTTTGAGTGTGAG+AGG - chr7_4:48032376-48032395 Msa1158630:intron 35.0%
!! GTCTAATTTTGAGTGTGAGA+GGG - chr7_4:48032377-48032396 Msa1158630:intron 35.0%
!! TGAAAGGGTATTACAATCGA+TGG - chr7_4:48032730-48032749 Msa1158630:CDS 35.0%
TAATCGTTTCGTTTGGATGA+TGG - chr7_4:48032990-48033009 Msa1158630:CDS 35.0%
!! TTTGGATGATGGATCACATA+GGG - chr7_4:48033001-48033020 Msa1158630:CDS 35.0%
!! TACAATTGAAGATTTGGTGC+TGG - chr7_4:48033025-48033044 Msa1158630:CDS 35.0%
CACATGTTATCAACTTACCA+TGG - chr7_4:48033107-48033126 Msa1158630:exon 35.0%
ACGTTTATCCATGCTTGTGA+AGG - chr7_4:48031526-48031545 Msa1158630:CDS 40.0%
CTGCAAAACATGACTCAGAT+TGG - chr7_4:48031607-48031626 Msa1158630:intron 40.0%
! GTTGCTACTTCATATGCATC+TGG - chr7_4:48031786-48031805 Msa1158630:intron 40.0%
TGAGGAAGAAATCTTGCTAG+AGG + chr7_4:48031846-48031865 None:intergenic 40.0%
AAGGCAGTGAGAACATACTT+CGG + chr7_4:48031870-48031889 None:intergenic 40.0%
CAGTTCACACATTCTTCACA+TGG + chr7_4:48032114-48032133 None:intergenic 40.0%
ACATCAATTAGGGACAGTAC+AGG + chr7_4:48032496-48032515 None:intergenic 40.0%
TAACACAAGGAAATGTGGGA+CGG + chr7_4:48032627-48032646 None:intergenic 40.0%
TATGCAGTTGGATCTTTGCT+TGG - chr7_4:48032690-48032709 Msa1158630:CDS 40.0%
!! GTTTGGATGATGGATCACAT+AGG - chr7_4:48033000-48033019 Msa1158630:CDS 40.0%
TGTTATCAACTTACCATGGC+AGG - chr7_4:48033111-48033130 Msa1158630:exon 40.0%
GTTATCAACTTACCATGGCA+GGG - chr7_4:48033112-48033131 Msa1158630:exon 40.0%
ACGTTTATCCATGCTTGTGA+AGG - chr7_4:48031526-48031545 Msa1158630:CDS 40.0%
CTGCAAAACATGACTCAGAT+TGG - chr7_4:48031607-48031626 Msa1158630:intron 40.0%
! GTTGCTACTTCATATGCATC+TGG - chr7_4:48031786-48031805 Msa1158630:intron 40.0%
TGAGGAAGAAATCTTGCTAG+AGG + chr7_4:48031846-48031865 None:intergenic 40.0%
AAGGCAGTGAGAACATACTT+CGG + chr7_4:48031870-48031889 None:intergenic 40.0%
CAGTTCACACATTCTTCACA+TGG + chr7_4:48032114-48032133 None:intergenic 40.0%
ACATCAATTAGGGACAGTAC+AGG + chr7_4:48032496-48032515 None:intergenic 40.0%
TAACACAAGGAAATGTGGGA+CGG + chr7_4:48032627-48032646 None:intergenic 40.0%
TATGCAGTTGGATCTTTGCT+TGG - chr7_4:48032690-48032709 Msa1158630:CDS 40.0%
!! GTTTGGATGATGGATCACAT+AGG - chr7_4:48033000-48033019 Msa1158630:CDS 40.0%
TGTTATCAACTTACCATGGC+AGG - chr7_4:48033111-48033130 Msa1158630:exon 40.0%
GTTATCAACTTACCATGGCA+GGG - chr7_4:48033112-48033131 Msa1158630:exon 40.0%
TGTGAGCTGAGCTTCAACAA+TGG + chr7_4:48031180-48031199 None:intergenic 45.0%
TACCCACGAACCTACAACTT+CGG + chr7_4:48031394-48031413 None:intergenic 45.0%
!! TTGAGTGTGAGAGGGTGTTT+AGG - chr7_4:48032385-48032404 Msa1158630:intron 45.0%
GGTTACACTCTAGCATGTAG+AGG + chr7_4:48032600-48032619 None:intergenic 45.0%
TTACCATGGCAGGGTATGAT+AGG - chr7_4:48033121-48033140 Msa1158630:five_prime_UTR 45.0%
TACCATGGCAGGGTATGATA+GGG - chr7_4:48033122-48033141 Msa1158630:five_prime_UTR 45.0%
GGGTATGATAGGGTAGATTG+AGG - chr7_4:48033132-48033151 Msa1158630:five_prime_UTR 45.0%
TGTGAGCTGAGCTTCAACAA+TGG + chr7_4:48031180-48031199 None:intergenic 45.0%
TACCCACGAACCTACAACTT+CGG + chr7_4:48031394-48031413 None:intergenic 45.0%
!! TTGAGTGTGAGAGGGTGTTT+AGG - chr7_4:48032385-48032404 Msa1158630:intron 45.0%
GGTTACACTCTAGCATGTAG+AGG + chr7_4:48032600-48032619 None:intergenic 45.0%
TTACCATGGCAGGGTATGAT+AGG - chr7_4:48033121-48033140 Msa1158630:five_prime_UTR 45.0%
TACCATGGCAGGGTATGATA+GGG - chr7_4:48033122-48033141 Msa1158630:five_prime_UTR 45.0%
GGGTATGATAGGGTAGATTG+AGG - chr7_4:48033132-48033151 Msa1158630:five_prime_UTR 45.0%
AGCTGAGCTTCAACAATGGC+GGG + chr7_4:48031176-48031195 None:intergenic 50.0%
GAGCTGAGCTTCAACAATGG+CGG + chr7_4:48031177-48031196 None:intergenic 50.0%
TGCAGGGGGTCTCATTGTTT+GGG + chr7_4:48031220-48031239 None:intergenic 50.0%
TTGCAGGGGGTCTCATTGTT+TGG + chr7_4:48031221-48031240 None:intergenic 50.0%
CACCTCTGAATCCACCATCT+CGG + chr7_4:48031278-48031297 None:intergenic 50.0%
! GGAGGTGGATTTCGTGATGA+AGG - chr7_4:48031360-48031379 Msa1158630:three_prime_UTR 50.0%
CACGAACCTACAACTTCGGA+GGG + chr7_4:48031390-48031409 None:intergenic 50.0%
CTCCGAAGTTGTAGGTTCGT+GGG - chr7_4:48031389-48031408 Msa1158630:exon 50.0%
CAGCATCTCCTTCACAAGCA+TGG + chr7_4:48031537-48031556 None:intergenic 50.0%
CTAGAGGCAAGAGCTTCCTA+GGG + chr7_4:48031830-48031849 None:intergenic 50.0%
GTGAGAACATACTTCGGCTG+AGG + chr7_4:48031864-48031883 None:intergenic 50.0%
!! TGTGAGAGGGTGTTTAGGAG+AGG - chr7_4:48032390-48032409 Msa1158630:intron 50.0%
!! AGAGGGTGTTTAGGAGAGGT+GGG - chr7_4:48032394-48032413 Msa1158630:intron 50.0%
TATTGCAGGGGACAAGCATC+AGG - chr7_4:48032777-48032796 Msa1158630:CDS 50.0%
TACCAAAACCACCACCTCCA+CGG + chr7_4:48032818-48032837 None:intergenic 50.0%
!! AGGTGGTGGTTTTCGTGGAA+GGG - chr7_4:48032854-48032873 Msa1158630:intron 50.0%
TACCCTATCATACCCTGCCA+TGG + chr7_4:48033127-48033146 None:intergenic 50.0%
AGCTGAGCTTCAACAATGGC+GGG + chr7_4:48031176-48031195 None:intergenic 50.0%
GAGCTGAGCTTCAACAATGG+CGG + chr7_4:48031177-48031196 None:intergenic 50.0%
TGCAGGGGGTCTCATTGTTT+GGG + chr7_4:48031220-48031239 None:intergenic 50.0%
TTGCAGGGGGTCTCATTGTT+TGG + chr7_4:48031221-48031240 None:intergenic 50.0%
CACCTCTGAATCCACCATCT+CGG + chr7_4:48031278-48031297 None:intergenic 50.0%
! GGAGGTGGATTTCGTGATGA+AGG - chr7_4:48031360-48031379 Msa1158630:three_prime_UTR 50.0%
CACGAACCTACAACTTCGGA+GGG + chr7_4:48031390-48031409 None:intergenic 50.0%
CTCCGAAGTTGTAGGTTCGT+GGG - chr7_4:48031389-48031408 Msa1158630:exon 50.0%
CAGCATCTCCTTCACAAGCA+TGG + chr7_4:48031537-48031556 None:intergenic 50.0%
CTAGAGGCAAGAGCTTCCTA+GGG + chr7_4:48031830-48031849 None:intergenic 50.0%
GTGAGAACATACTTCGGCTG+AGG + chr7_4:48031864-48031883 None:intergenic 50.0%
!! TGTGAGAGGGTGTTTAGGAG+AGG - chr7_4:48032390-48032409 Msa1158630:intron 50.0%
!! AGAGGGTGTTTAGGAGAGGT+GGG - chr7_4:48032394-48032413 Msa1158630:intron 50.0%
TATTGCAGGGGACAAGCATC+AGG - chr7_4:48032777-48032796 Msa1158630:CDS 50.0%
TACCAAAACCACCACCTCCA+CGG + chr7_4:48032818-48032837 None:intergenic 50.0%
!! AGGTGGTGGTTTTCGTGGAA+GGG - chr7_4:48032854-48032873 Msa1158630:intron 50.0%
TACCCTATCATACCCTGCCA+TGG + chr7_4:48033127-48033146 None:intergenic 50.0%
GCTGAGCTTCAACAATGGCG+GGG + chr7_4:48031175-48031194 None:intergenic 55.0%
ACAATGAGACCCCCTGCAAG+AGG - chr7_4:48031222-48031241 Msa1158630:three_prime_UTR 55.0%
CACCTCTGAATCCACCACCA+CGG + chr7_4:48031254-48031273 None:intergenic 55.0%
!! CGAGATGGTGGATTCAGAGG+TGG - chr7_4:48031276-48031295 Msa1158630:three_prime_UTR 55.0%
GGATTCAGAGGTGGTCGTGA+TGG - chr7_4:48031285-48031304 Msa1158630:three_prime_UTR 55.0%
TTCAGAGGTGGTCGTGATGG+AGG - chr7_4:48031288-48031307 Msa1158630:three_prime_UTR 55.0%
!! CGTGATGGAGGAGGTTTTCG+TGG - chr7_4:48031300-48031319 Msa1158630:three_prime_UTR 55.0%
GAACCTACAACTTCGGAGGG+AGG + chr7_4:48031387-48031406 None:intergenic 55.0%
CCACGAACCTACAACTTCGG+AGG + chr7_4:48031391-48031410 None:intergenic 55.0%
CCTCCGAAGTTGTAGGTTCG+TGG - chr7_4:48031388-48031407 Msa1158630:exon 55.0%
GCTAGAGGCAAGAGCTTCCT+AGG + chr7_4:48031831-48031850 None:intergenic 55.0%
!! GAGAGGGTGTTTAGGAGAGG+TGG - chr7_4:48032393-48032412 Msa1158630:intron 55.0%
AAGGAAATGTGGGACGGTGC+AGG + chr7_4:48032621-48032640 None:intergenic 55.0%
GGACAAGCATCAGGTGGTAG+AGG - chr7_4:48032786-48032805 Msa1158630:CDS 55.0%
CAAGCATCAGGTGGTAGAGG+TGG - chr7_4:48032789-48032808 Msa1158630:CDS 55.0%
!!! GGAGGTGGTGGTTTTGGTAG+AGG - chr7_4:48032819-48032838 Msa1158630:intron 55.0%
!!! GGTGGTGGTTTTGGTAGAGG+TGG - chr7_4:48032822-48032841 Msa1158630:intron 55.0%
!!! GGTGGTTTTGGTAGAGGTGG+TGG - chr7_4:48032825-48032844 Msa1158630:intron 55.0%
CACGAAAACCACCACCTCCA+CGG + chr7_4:48032851-48032870 None:intergenic 55.0%
!! GAGGTGGTGGTTTTCGTGGA+AGG - chr7_4:48032853-48032872 Msa1158630:intron 55.0%
!! GGTGGTGGTTTTCGTGGAAG+GGG - chr7_4:48032855-48032874 Msa1158630:intron 55.0%
!! TGGACGTGGTGGTGGTTTCA+GGG - chr7_4:48032911-48032930 Msa1158630:intron 55.0%
!! TGGTGGTGGTTTCAGGGGAA+GGG - chr7_4:48032917-48032936 Msa1158630:intron 55.0%
AGGGGAAGGGGCAGATTCTA+GGG - chr7_4:48032930-48032949 Msa1158630:intron 55.0%
GCTGAGCTTCAACAATGGCG+GGG + chr7_4:48031175-48031194 None:intergenic 55.0%
ACAATGAGACCCCCTGCAAG+AGG - chr7_4:48031222-48031241 Msa1158630:three_prime_UTR 55.0%
CACCTCTGAATCCACCACCA+CGG + chr7_4:48031254-48031273 None:intergenic 55.0%
!! CGAGATGGTGGATTCAGAGG+TGG - chr7_4:48031276-48031295 Msa1158630:three_prime_UTR 55.0%
GGATTCAGAGGTGGTCGTGA+TGG - chr7_4:48031285-48031304 Msa1158630:three_prime_UTR 55.0%
TTCAGAGGTGGTCGTGATGG+AGG - chr7_4:48031288-48031307 Msa1158630:three_prime_UTR 55.0%
!! CGTGATGGAGGAGGTTTTCG+TGG - chr7_4:48031300-48031319 Msa1158630:three_prime_UTR 55.0%
GAACCTACAACTTCGGAGGG+AGG + chr7_4:48031387-48031406 None:intergenic 55.0%
CCACGAACCTACAACTTCGG+AGG + chr7_4:48031391-48031410 None:intergenic 55.0%
CCTCCGAAGTTGTAGGTTCG+TGG - chr7_4:48031388-48031407 Msa1158630:exon 55.0%
GCTAGAGGCAAGAGCTTCCT+AGG + chr7_4:48031831-48031850 None:intergenic 55.0%
!! GAGAGGGTGTTTAGGAGAGG+TGG - chr7_4:48032393-48032412 Msa1158630:intron 55.0%
AAGGAAATGTGGGACGGTGC+AGG + chr7_4:48032621-48032640 None:intergenic 55.0%
GGACAAGCATCAGGTGGTAG+AGG - chr7_4:48032786-48032805 Msa1158630:CDS 55.0%
CAAGCATCAGGTGGTAGAGG+TGG - chr7_4:48032789-48032808 Msa1158630:CDS 55.0%
!!! GGAGGTGGTGGTTTTGGTAG+AGG - chr7_4:48032819-48032838 Msa1158630:intron 55.0%
!!! GGTGGTGGTTTTGGTAGAGG+TGG - chr7_4:48032822-48032841 Msa1158630:intron 55.0%
!!! GGTGGTTTTGGTAGAGGTGG+TGG - chr7_4:48032825-48032844 Msa1158630:intron 55.0%
CACGAAAACCACCACCTCCA+CGG + chr7_4:48032851-48032870 None:intergenic 55.0%
!! GAGGTGGTGGTTTTCGTGGA+AGG - chr7_4:48032853-48032872 Msa1158630:intron 55.0%
!! GGTGGTGGTTTTCGTGGAAG+GGG - chr7_4:48032855-48032874 Msa1158630:intron 55.0%
!! TGGACGTGGTGGTGGTTTCA+GGG - chr7_4:48032911-48032930 Msa1158630:intron 55.0%
!! TGGTGGTGGTTTCAGGGGAA+GGG - chr7_4:48032917-48032936 Msa1158630:intron 55.0%
AGGGGAAGGGGCAGATTCTA+GGG - chr7_4:48032930-48032949 Msa1158630:intron 55.0%
ATGAGACCCCCTGCAAGAGG+TGG - chr7_4:48031225-48031244 Msa1158630:three_prime_UTR 60.0%
!! CGTGGTGGTGGATTCAGAGG+TGG - chr7_4:48031252-48031271 Msa1158630:three_prime_UTR 60.0%
GGATTCAGAGGTGGCCGAGA+TGG - chr7_4:48031261-48031280 Msa1158630:three_prime_UTR 60.0%
TTCAGAGGTGGCCGAGATGG+TGG - chr7_4:48031264-48031283 Msa1158630:three_prime_UTR 60.0%
!! GGCCGAGATGGTGGATTCAG+AGG - chr7_4:48031273-48031292 Msa1158630:three_prime_UTR 60.0%
! AGAGGTGGTCGTGATGGAGG+AGG - chr7_4:48031291-48031310 Msa1158630:three_prime_UTR 60.0%
! GGAGGAGGTTTTCGTGGACG+TGG - chr7_4:48031306-48031325 Msa1158630:three_prime_UTR 60.0%
! GGAGGTTTTCGTGGACGTGG+TGG - chr7_4:48031309-48031328 Msa1158630:three_prime_UTR 60.0%
! GGTTTTCGTGGACGTGGTGG+TGG - chr7_4:48031312-48031331 Msa1158630:three_prime_UTR 60.0%
!! GGACGTGGTGGTGGTCGATT+CGG - chr7_4:48031321-48031340 Msa1158630:three_prime_UTR 60.0%
GGACCTCCCTCCGAAGTTGT+AGG - chr7_4:48031381-48031400 Msa1158630:exon 60.0%
TGCAGGGGACAAGCATCAGG+TGG - chr7_4:48032780-48032799 Msa1158630:CDS 60.0%
GCATCAGGTGGTAGAGGTGG+AGG - chr7_4:48032792-48032811 Msa1158630:CDS 60.0%
! TTTGGTAGAGGTGGTGGCCG+TGG - chr7_4:48032831-48032850 Msa1158630:intron 60.0%
!! CGTGGAGGTGGTGGTTTTCG+TGG - chr7_4:48032849-48032868 Msa1158630:intron 60.0%
AGGACCTCTTCCACCCCTTG+GGG + chr7_4:48032883-48032902 None:intergenic 60.0%
GAGGACCTCTTCCACCCCTT+GGG + chr7_4:48032884-48032903 None:intergenic 60.0%
GGTGGAAGAGGTCCTCCAAG+AGG - chr7_4:48032888-48032907 Msa1158630:intron 60.0%
GGAAGAGGTCCTCCAAGAGG+TGG - chr7_4:48032891-48032910 Msa1158630:intron 60.0%
!! GTGGACGTGGTGGTGGTTTC+AGG - chr7_4:48032910-48032929 Msa1158630:intron 60.0%
!! GGACGTGGTGGTGGTTTCAG+GGG - chr7_4:48032912-48032931 Msa1158630:intron 60.0%
!! GTGGTGGTGGTTTCAGGGGA+AGG - chr7_4:48032916-48032935 Msa1158630:intron 60.0%
! GGTGGTGGTTTCAGGGGAAG+GGG - chr7_4:48032918-48032937 Msa1158630:intron 60.0%
CAGGGGAAGGGGCAGATTCT+AGG - chr7_4:48032929-48032948 Msa1158630:intron 60.0%
ATGAGACCCCCTGCAAGAGG+TGG - chr7_4:48031225-48031244 Msa1158630:three_prime_UTR 60.0%
!! CGTGGTGGTGGATTCAGAGG+TGG - chr7_4:48031252-48031271 Msa1158630:three_prime_UTR 60.0%
GGATTCAGAGGTGGCCGAGA+TGG - chr7_4:48031261-48031280 Msa1158630:three_prime_UTR 60.0%
TTCAGAGGTGGCCGAGATGG+TGG - chr7_4:48031264-48031283 Msa1158630:three_prime_UTR 60.0%
!! GGCCGAGATGGTGGATTCAG+AGG - chr7_4:48031273-48031292 Msa1158630:three_prime_UTR 60.0%
! AGAGGTGGTCGTGATGGAGG+AGG - chr7_4:48031291-48031310 Msa1158630:three_prime_UTR 60.0%
! GGAGGAGGTTTTCGTGGACG+TGG - chr7_4:48031306-48031325 Msa1158630:three_prime_UTR 60.0%
! GGAGGTTTTCGTGGACGTGG+TGG - chr7_4:48031309-48031328 Msa1158630:three_prime_UTR 60.0%
! GGTTTTCGTGGACGTGGTGG+TGG - chr7_4:48031312-48031331 Msa1158630:three_prime_UTR 60.0%
!! GGACGTGGTGGTGGTCGATT+CGG - chr7_4:48031321-48031340 Msa1158630:three_prime_UTR 60.0%
GGACCTCCCTCCGAAGTTGT+AGG - chr7_4:48031381-48031400 Msa1158630:exon 60.0%
TGCAGGGGACAAGCATCAGG+TGG - chr7_4:48032780-48032799 Msa1158630:CDS 60.0%
GCATCAGGTGGTAGAGGTGG+AGG - chr7_4:48032792-48032811 Msa1158630:CDS 60.0%
! TTTGGTAGAGGTGGTGGCCG+TGG - chr7_4:48032831-48032850 Msa1158630:intron 60.0%
!! CGTGGAGGTGGTGGTTTTCG+TGG - chr7_4:48032849-48032868 Msa1158630:intron 60.0%
AGGACCTCTTCCACCCCTTG+GGG + chr7_4:48032883-48032902 None:intergenic 60.0%
GAGGACCTCTTCCACCCCTT+GGG + chr7_4:48032884-48032903 None:intergenic 60.0%
GGTGGAAGAGGTCCTCCAAG+AGG - chr7_4:48032888-48032907 Msa1158630:intron 60.0%
GGAAGAGGTCCTCCAAGAGG+TGG - chr7_4:48032891-48032910 Msa1158630:intron 60.0%
!! GTGGACGTGGTGGTGGTTTC+AGG - chr7_4:48032910-48032929 Msa1158630:intron 60.0%
!! GGACGTGGTGGTGGTTTCAG+GGG - chr7_4:48032912-48032931 Msa1158630:intron 60.0%
!! GTGGTGGTGGTTTCAGGGGA+AGG - chr7_4:48032916-48032935 Msa1158630:intron 60.0%
! GGTGGTGGTTTCAGGGGAAG+GGG - chr7_4:48032918-48032937 Msa1158630:intron 60.0%
CAGGGGAAGGGGCAGATTCT+AGG - chr7_4:48032929-48032948 Msa1158630:intron 60.0%
AGACCCCCTGCAAGAGGTGG+CGG - chr7_4:48031228-48031247 Msa1158630:three_prime_UTR 65.0%
!! GGCCGTGGTGGTGGATTCAG+AGG - chr7_4:48031249-48031268 Msa1158630:three_prime_UTR 65.0%
!! CGTGGTGGTGGTCGATTCGG+CGG - chr7_4:48031324-48031343 Msa1158630:three_prime_UTR 65.0%
!! GGCCGTGGAGGTGGTGGTTT+TGG - chr7_4:48032813-48032832 Msa1158630:intron 65.0%
TTCGTGGAAGGGGTCCCCCA+AGG - chr7_4:48032865-48032884 Msa1158630:intron 65.0%
TCGTGGAAGGGGTCCCCCAA+GGG - chr7_4:48032866-48032885 Msa1158630:intron 65.0%
GGACCTCTTCCACCCCTTGG+GGG + chr7_4:48032882-48032901 None:intergenic 65.0%
GGAGGACCTCTTCCACCCCT+TGG + chr7_4:48032885-48032904 None:intergenic 65.0%
GGTCCTCCAAGAGGTGGACG+TGG - chr7_4:48032897-48032916 Msa1158630:intron 65.0%
CCACCACGTCCACCTCTTGG+AGG + chr7_4:48032903-48032922 None:intergenic 65.0%
CCTCCAAGAGGTGGACGTGG+TGG - chr7_4:48032900-48032919 Msa1158630:intron 65.0%
CCACCACCACGTCCACCTCT+TGG + chr7_4:48032906-48032925 None:intergenic 65.0%
CCAAGAGGTGGACGTGGTGG+TGG - chr7_4:48032903-48032922 Msa1158630:intron 65.0%
AGACCCCCTGCAAGAGGTGG+CGG - chr7_4:48031228-48031247 Msa1158630:three_prime_UTR 65.0%
!! GGCCGTGGTGGTGGATTCAG+AGG - chr7_4:48031249-48031268 Msa1158630:three_prime_UTR 65.0%
!! CGTGGTGGTGGTCGATTCGG+CGG - chr7_4:48031324-48031343 Msa1158630:three_prime_UTR 65.0%
!! GGCCGTGGAGGTGGTGGTTT+TGG - chr7_4:48032813-48032832 Msa1158630:intron 65.0%
TTCGTGGAAGGGGTCCCCCA+AGG - chr7_4:48032865-48032884 Msa1158630:intron 65.0%
TCGTGGAAGGGGTCCCCCAA+GGG - chr7_4:48032866-48032885 Msa1158630:intron 65.0%
GGACCTCTTCCACCCCTTGG+GGG + chr7_4:48032882-48032901 None:intergenic 65.0%
GGAGGACCTCTTCCACCCCT+TGG + chr7_4:48032885-48032904 None:intergenic 65.0%
GGTCCTCCAAGAGGTGGACG+TGG - chr7_4:48032897-48032916 Msa1158630:intron 65.0%
CCACCACGTCCACCTCTTGG+AGG + chr7_4:48032903-48032922 None:intergenic 65.0%
CCTCCAAGAGGTGGACGTGG+TGG - chr7_4:48032900-48032919 Msa1158630:intron 65.0%
CCACCACCACGTCCACCTCT+TGG + chr7_4:48032906-48032925 None:intergenic 65.0%
CCAAGAGGTGGACGTGGTGG+TGG - chr7_4:48032903-48032922 Msa1158630:intron 65.0%
ACGGCCGCCACCTCTTGCAG+GGG + chr7_4:48031235-48031254 None:intergenic 70.0%
CACGGCCGCCACCTCTTGCA+GGG + chr7_4:48031236-48031255 None:intergenic 70.0%
!! GGTGGTGGTCGATTCGGCGG+TGG - chr7_4:48031327-48031346 Msa1158630:three_prime_UTR 70.0%
!! GGTCGATTCGGCGGTGGACG+TGG - chr7_4:48031333-48031352 Msa1158630:three_prime_UTR 70.0%
! CGATTCGGCGGTGGACGTGG+TGG - chr7_4:48031336-48031355 Msa1158630:three_prime_UTR 70.0%
TTCGGCGGTGGACGTGGTGG+TGG - chr7_4:48031339-48031358 Msa1158630:three_prime_UTR 70.0%
!! GGTGGACGTGGTGGTGGAGG+TGG - chr7_4:48031345-48031364 Msa1158630:three_prime_UTR 70.0%
GGTGGTAGAGGTGGAGGCCG+TGG - chr7_4:48032798-48032817 Msa1158630:CDS 70.0%
GGTAGAGGTGGAGGCCGTGG+AGG - chr7_4:48032801-48032820 Msa1158630:CDS 70.0%
AGAGGTGGAGGCCGTGGAGG+TGG - chr7_4:48032804-48032823 Msa1158630:CDS 70.0%
! GGTAGAGGTGGTGGCCGTGG+AGG - chr7_4:48032834-48032853 Msa1158630:intron 70.0%
! AGAGGTGGTGGCCGTGGAGG+TGG - chr7_4:48032837-48032856 Msa1158630:intron 70.0%
CGTGGAAGGGGTCCCCCAAG+GGG - chr7_4:48032867-48032886 Msa1158630:intron 70.0%
GGTCCCCCAAGGGGTGGAAG+AGG - chr7_4:48032876-48032895 Msa1158630:intron 70.0%
ACGGCCGCCACCTCTTGCAG+GGG + chr7_4:48031235-48031254 None:intergenic 70.0%
CACGGCCGCCACCTCTTGCA+GGG + chr7_4:48031236-48031255 None:intergenic 70.0%
!! GGTGGTGGTCGATTCGGCGG+TGG - chr7_4:48031327-48031346 Msa1158630:three_prime_UTR 70.0%
!! GGTCGATTCGGCGGTGGACG+TGG - chr7_4:48031333-48031352 Msa1158630:three_prime_UTR 70.0%
! CGATTCGGCGGTGGACGTGG+TGG - chr7_4:48031336-48031355 Msa1158630:three_prime_UTR 70.0%
TTCGGCGGTGGACGTGGTGG+TGG - chr7_4:48031339-48031358 Msa1158630:three_prime_UTR 70.0%
!! GGTGGACGTGGTGGTGGAGG+TGG - chr7_4:48031345-48031364 Msa1158630:three_prime_UTR 70.0%
GGTGGTAGAGGTGGAGGCCG+TGG - chr7_4:48032798-48032817 Msa1158630:CDS 70.0%
GGTAGAGGTGGAGGCCGTGG+AGG - chr7_4:48032801-48032820 Msa1158630:CDS 70.0%
AGAGGTGGAGGCCGTGGAGG+TGG - chr7_4:48032804-48032823 Msa1158630:CDS 70.0%
! GGTAGAGGTGGTGGCCGTGG+AGG - chr7_4:48032834-48032853 Msa1158630:intron 70.0%
! AGAGGTGGTGGCCGTGGAGG+TGG - chr7_4:48032837-48032856 Msa1158630:intron 70.0%
CGTGGAAGGGGTCCCCCAAG+GGG - chr7_4:48032867-48032886 Msa1158630:intron 70.0%
GGTCCCCCAAGGGGTGGAAG+AGG - chr7_4:48032876-48032895 Msa1158630:intron 70.0%
CGGCCGCCACCTCTTGCAGG+GGG + chr7_4:48031234-48031253 None:intergenic 75.0%
CCACGGCCGCCACCTCTTGC+AGG + chr7_4:48031237-48031256 None:intergenic 75.0%
! CCTGCAAGAGGTGGCGGCCG+TGG - chr7_4:48031234-48031253 Msa1158630:three_prime_UTR 75.0%
! GCAAGAGGTGGCGGCCGTGG+TGG - chr7_4:48031237-48031256 Msa1158630:three_prime_UTR 75.0%
! AGAGGTGGCGGCCGTGGTGG+TGG - chr7_4:48031240-48031259 Msa1158630:three_prime_UTR 75.0%
!! GGCGGTGGACGTGGTGGTGG+AGG - chr7_4:48031342-48031361 Msa1158630:three_prime_UTR 75.0%
GGTGGAGGCCGTGGAGGTGG+TGG - chr7_4:48032807-48032826 Msa1158630:intron 75.0%
! GGTGGTGGCCGTGGAGGTGG+TGG - chr7_4:48032840-48032859 Msa1158630:intron 75.0%
GGAAGGGGTCCCCCAAGGGG+TGG - chr7_4:48032870-48032889 Msa1158630:intron 75.0%
CGGCCGCCACCTCTTGCAGG+GGG + chr7_4:48031234-48031253 None:intergenic 75.0%
CCACGGCCGCCACCTCTTGC+AGG + chr7_4:48031237-48031256 None:intergenic 75.0%
! CCTGCAAGAGGTGGCGGCCG+TGG - chr7_4:48031234-48031253 Msa1158630:three_prime_UTR 75.0%
! GCAAGAGGTGGCGGCCGTGG+TGG - chr7_4:48031237-48031256 Msa1158630:three_prime_UTR 75.0%
! AGAGGTGGCGGCCGTGGTGG+TGG - chr7_4:48031240-48031259 Msa1158630:three_prime_UTR 75.0%
!! GGCGGTGGACGTGGTGGTGG+AGG - chr7_4:48031342-48031361 Msa1158630:three_prime_UTR 75.0%
GGTGGAGGCCGTGGAGGTGG+TGG - chr7_4:48032807-48032826 Msa1158630:intron 75.0%
! GGTGGTGGCCGTGGAGGTGG+TGG - chr7_4:48032840-48032859 Msa1158630:intron 75.0%
GGAAGGGGTCCCCCAAGGGG+TGG - chr7_4:48032870-48032889 Msa1158630:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 48031128 48033215 48031128 ID=Msa1158630;Name=Msa1158630
chr7_4 mRNA 48031128 48033215 48031128 ID=Msa1158630-mRNA-1;Parent=Msa1158630;Name=Msa1158630-mRNA-1;_AED=0.06;_eAED=0.06;_QI=97|1|1|1|1|1|4|265|202
chr7_4 exon 48031128 48031558 48031128 ID=Msa1158630-mRNA-1:exon:12929;Parent=Msa1158630-mRNA-1
chr7_4 exon 48032472 48032587 48032472 ID=Msa1158630-mRNA-1:exon:12928;Parent=Msa1158630-mRNA-1
chr7_4 exon 48032677 48032825 48032677 ID=Msa1158630-mRNA-1:exon:12927;Parent=Msa1158630-mRNA-1
chr7_4 exon 48032941 48033215 48032941 ID=Msa1158630-mRNA-1:exon:12926;Parent=Msa1158630-mRNA-1
chr7_4 five_prime_UTR 48033119 48033215 48033119 ID=Msa1158630-mRNA-1:five_prime_utr;Parent=Msa1158630-mRNA-1
chr7_4 CDS 48032941 48033118 48032941 ID=Msa1158630-mRNA-1:cds;Parent=Msa1158630-mRNA-1
chr7_4 CDS 48032677 48032825 48032677 ID=Msa1158630-mRNA-1:cds;Parent=Msa1158630-mRNA-1
chr7_4 CDS 48032472 48032587 48032472 ID=Msa1158630-mRNA-1:cds;Parent=Msa1158630-mRNA-1
chr7_4 CDS 48031393 48031558 48031393 ID=Msa1158630-mRNA-1:cds;Parent=Msa1158630-mRNA-1
chr7_4 three_prime_UTR 48031128 48031392 48031128 ID=Msa1158630-mRNA-1:three_prime_utr;Parent=Msa1158630-mRNA-1
Gene Sequence

>Msa1158630

ATGAGACCCCCTGCAAGAGGTGGCGGCCGTGGTGGTGGATTCAGAGGTGGCCGAGATGGTGGATTCAGAGGTGGTCGTGATGGAGGAGGTTTTCGTGGACGTGGTGGTGGTCGATTCGGCGGTGGACGTGGTGGTGGAGGTGGATTTCGTGATGAAGGACCTCCCTCCGAAGTTGTAGAGGTTTCAACGTTTATCCATGCTTGTGAAGGAGATGCTGTTACAAAGCTTACCAATGAGAAAATTCCATTTTTTAATGCTCCTATTTATCTGCAAAACATGACTCAGATTGGGAAAGTTGATGAAATATTTGGTCCCATCAATGAATCTTACTTTTCTATTAAAATGATGGAAGGGATTGTTGCTACTTCATATGCATCTGGTGACAAGTTTTACATTGACCCTAGGAAGCTCTTGCCTCTAGCAAGATTTCTTCCTCAGCCGAAGGGACAAGCATCAGGTGGTAGAGGTGGAGGCCGTGGAGGTGGTGGTTTTGGTAGAGGTGGTGGCCGTGGAGGTGGTGGTTTTCGTGGAAGGGGTCCCCCAAGGGGTGGAAGAGGTCCTCCAAGAGGTGGACGTGGTGGTGGTTTCAGGGGAAGGGGCAGATTCTAG

Protein sequence

>Msa1158630

MRPPARGGGRGGGFRGGRDGGFRGGRDGGGFRGRGGGRFGGGRGGGGGFRDEGPPSEVVEVSTFIHACEGDAVTKLTNEKIPFFNAPIYLQNMTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPRKLLPLARFLPQPKGQASGGRGGGRGGGGFGRGGGRGGGGFRGRGPPRGGRGPPRGGRGGGFRGRGRF*