AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1151430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 14 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTATTGGAGAAGTTTCA+TGG 0.356631 7_4:-36012518 Msa1151430:CDS
AAAATCCAGCTTTCGAGATA+TGG 0.371968 7_4:+36012594 None:intergenic
TGTTGACTTCAGCGAACTTT+CGG 0.382328 7_4:-36012632 Msa1151430:CDS
TTTGAACAAGTAGTGGTGAT+TGG 0.419006 7_4:+36012491 None:intergenic
TTGAACAAGTAGTGGTGATT+GGG 0.499146 7_4:+36012492 None:intergenic
TGATACCATATCTCGAAAGC+TGG 0.511555 7_4:-36012599 Msa1151430:CDS
TCCTCAATCATCGTCAAGTA+CGG 0.517347 7_4:-36014709 Msa1151430:intron
TTTCTGGTGTTTGCAAGGAG+TGG 0.522122 7_4:-36012555 Msa1151430:CDS
CTGGTGTTTGCAAGGAGTGG+AGG 0.526377 7_4:-36012552 Msa1151430:CDS
GTGACAGAGATGATTCTAAG+AGG 0.571280 7_4:-36014740 Msa1151430:CDS
GAAGTTGTTTGAACAAGTAG+TGG 0.607939 7_4:+36012484 None:intergenic
CTCACAAAGAATTCAGAGCA+AGG 0.609873 7_4:-36014765 Msa1151430:CDS
ACCGTACTTGACGATGATTG+AGG 0.635962 7_4:+36014708 None:intergenic
TCACAAAGAATTCAGAGCAA+GGG 0.646539 7_4:-36014764 Msa1151430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAGAATTAGAAATTA+TGG + chr7_4:36013241-36013260 None:intergenic 10.0%
!!! TGAAATATTACATATTTTTA+GGG - chr7_4:36013270-36013289 Msa1151430:intron 10.0%
!! ATTAATAGAATTAGAAATTA+TGG + chr7_4:36013241-36013260 None:intergenic 10.0%
!!! TGAAATATTACATATTTTTA+GGG - chr7_4:36013270-36013289 Msa1151430:intron 10.0%
!!! GTGAAATATTACATATTTTT+AGG - chr7_4:36013269-36013288 Msa1151430:intron 15.0%
!!! AGTTTATTCTTTTTTCTTTT+CGG - chr7_4:36013313-36013332 Msa1151430:intron 15.0%
!!! TAGTTTTTTAGTTTTTTCTT+TGG + chr7_4:36013358-36013377 None:intergenic 15.0%
!! GAAAAAACTAAAAAACTAAA+TGG - chr7_4:36013360-36013379 Msa1151430:intron 15.0%
!!! TATATAAAAGCAATTTTAGT+GGG + chr7_4:36013603-36013622 None:intergenic 15.0%
!!! ATATATAAAAGCAATTTTAG+TGG + chr7_4:36013604-36013623 None:intergenic 15.0%
!!! GTGAAATATTACATATTTTT+AGG - chr7_4:36013269-36013288 Msa1151430:intron 15.0%
!!! AGTTTATTCTTTTTTCTTTT+CGG - chr7_4:36013313-36013332 Msa1151430:intron 15.0%
!!! TAGTTTTTTAGTTTTTTCTT+TGG + chr7_4:36013358-36013377 None:intergenic 15.0%
!! GAAAAAACTAAAAAACTAAA+TGG - chr7_4:36013360-36013379 Msa1151430:intron 15.0%
!!! TATATAAAAGCAATTTTAGT+GGG + chr7_4:36013603-36013622 None:intergenic 15.0%
!!! ATATATAAAAGCAATTTTAG+TGG + chr7_4:36013604-36013623 None:intergenic 15.0%
!!! ATTACATGATTGTTTTAGAT+TGG - chr7_4:36012797-36012816 Msa1151430:intron 20.0%
!!! TTACATGATTGTTTTAGATT+GGG - chr7_4:36012798-36012817 Msa1151430:intron 20.0%
!!! GTCTTTCAATTAAATTTTGT+GGG - chr7_4:36012887-36012906 Msa1151430:intron 20.0%
!!! TCTTTCAATTAAATTTTGTG+GGG - chr7_4:36012888-36012907 Msa1151430:intron 20.0%
!! ACTAATTATAAGCATTACTT+TGG + chr7_4:36013173-36013192 None:intergenic 20.0%
!! AAAGTAATGCTTATAATTAG+TGG - chr7_4:36013172-36013191 Msa1151430:intron 20.0%
!! AAGTAATGCTTATAATTAGT+GGG - chr7_4:36013173-36013192 Msa1151430:intron 20.0%
!! AAGAAAAAAGAATAAACTGA+AGG + chr7_4:36013311-36013330 None:intergenic 20.0%
!!! TTAGTTTTGTCATAATATGA+GGG + chr7_4:36013524-36013543 None:intergenic 20.0%
!!! TTTAGTTTTGTCATAATATG+AGG + chr7_4:36013525-36013544 None:intergenic 20.0%
!!! ATATAAAAGCAATTTTAGTG+GGG + chr7_4:36013602-36013621 None:intergenic 20.0%
!!! CTCTAAAATTCATTTATACA+TGG + chr7_4:36013629-36013648 None:intergenic 20.0%
!! ATAGATGATTAAATTGATGT+TGG + chr7_4:36014028-36014047 None:intergenic 20.0%
!!! TTTTTCCAATATCATATAGA+TGG - chr7_4:36014292-36014311 Msa1151430:intron 20.0%
!!! TGCACTTTTATTATTAACAT+TGG - chr7_4:36014491-36014510 Msa1151430:intron 20.0%
!!! GCACTTTTATTATTAACATT+GGG - chr7_4:36014492-36014511 Msa1151430:intron 20.0%
!!! ATTACATGATTGTTTTAGAT+TGG - chr7_4:36012797-36012816 Msa1151430:intron 20.0%
!!! TTACATGATTGTTTTAGATT+GGG - chr7_4:36012798-36012817 Msa1151430:intron 20.0%
!!! GTCTTTCAATTAAATTTTGT+GGG - chr7_4:36012887-36012906 Msa1151430:intron 20.0%
!!! TCTTTCAATTAAATTTTGTG+GGG - chr7_4:36012888-36012907 Msa1151430:intron 20.0%
!! ACTAATTATAAGCATTACTT+TGG + chr7_4:36013173-36013192 None:intergenic 20.0%
!! AAAGTAATGCTTATAATTAG+TGG - chr7_4:36013172-36013191 Msa1151430:intron 20.0%
!! AAGTAATGCTTATAATTAGT+GGG - chr7_4:36013173-36013192 Msa1151430:intron 20.0%
!! AAGAAAAAAGAATAAACTGA+AGG + chr7_4:36013311-36013330 None:intergenic 20.0%
!!! TTAGTTTTGTCATAATATGA+GGG + chr7_4:36013524-36013543 None:intergenic 20.0%
!!! TTTAGTTTTGTCATAATATG+AGG + chr7_4:36013525-36013544 None:intergenic 20.0%
!!! ATATAAAAGCAATTTTAGTG+GGG + chr7_4:36013602-36013621 None:intergenic 20.0%
!!! CTCTAAAATTCATTTATACA+TGG + chr7_4:36013629-36013648 None:intergenic 20.0%
!! ATAGATGATTAAATTGATGT+TGG + chr7_4:36014028-36014047 None:intergenic 20.0%
!!! TTTTTCCAATATCATATAGA+TGG - chr7_4:36014292-36014311 Msa1151430:intron 20.0%
!!! TGCACTTTTATTATTAACAT+TGG - chr7_4:36014491-36014510 Msa1151430:intron 20.0%
!!! GCACTTTTATTATTAACATT+GGG - chr7_4:36014492-36014511 Msa1151430:intron 20.0%
! ACAATCTCATGAAACAATAT+AGG + chr7_4:36012637-36012656 None:intergenic 25.0%
!!! TAATTTTAACCTATCAGTCA+TGG + chr7_4:36012725-36012744 None:intergenic 25.0%
!! CGTCTTTCAATTAAATTTTG+TGG - chr7_4:36012886-36012905 Msa1151430:intron 25.0%
!!! ATTACTTTGGCTTTATTTCT+AGG + chr7_4:36013160-36013179 None:intergenic 25.0%
! AAAACTAAATGGACATTCTT+AGG - chr7_4:36013371-36013390 Msa1151430:intron 25.0%
! ACAACTAAAGGAATATAAAG+AGG - chr7_4:36013462-36013481 Msa1151430:intron 25.0%
! AATATAAAGAGGCCAAAAAT+AGG - chr7_4:36013473-36013492 Msa1151430:intron 25.0%
!!! GCTTGTTTTAAATTTCTGAA+GGG + chr7_4:36013770-36013789 None:intergenic 25.0%
! AAGAAATATGATACTTGCAA+GGG + chr7_4:36013819-36013838 None:intergenic 25.0%
! TAAGAAATATGATACTTGCA+AGG + chr7_4:36013820-36013839 None:intergenic 25.0%
! TATAATAGAATAAACCCATG+GGG + chr7_4:36013889-36013908 None:intergenic 25.0%
! GTATAATAGAATAAACCCAT+GGG + chr7_4:36013890-36013909 None:intergenic 25.0%
! TGTATAATAGAATAAACCCA+TGG + chr7_4:36013891-36013910 None:intergenic 25.0%
! TATTGTTGGAAATCAAAGTA+GGG + chr7_4:36013970-36013989 None:intergenic 25.0%
!!! TTGATGTTGGAATTATTTTG+AGG + chr7_4:36014015-36014034 None:intergenic 25.0%
!!! TATACAATTAAAGTGTCGTT+TGG - chr7_4:36014051-36014070 Msa1151430:intron 25.0%
!! TCAAAGATTTATGGGTTTTA+TGG - chr7_4:36014252-36014271 Msa1151430:intron 25.0%
!!! TTATGGGTTTTATGGATTTA+TGG - chr7_4:36014260-36014279 Msa1151430:intron 25.0%
!!! TATGGGTTTTATGGATTTAT+GGG - chr7_4:36014261-36014280 Msa1151430:intron 25.0%
! ATCAACCATCTATATGATAT+TGG + chr7_4:36014300-36014319 None:intergenic 25.0%
!! TTGAGCCAATATTTTCAAAT+TGG - chr7_4:36014321-36014340 Msa1151430:intron 25.0%
! TAATATCATAGAAAATCGTG+AGG + chr7_4:36014447-36014466 None:intergenic 25.0%
! GGAGAGTTCAAAAAATTTAT+TGG - chr7_4:36014671-36014690 Msa1151430:intron 25.0%
! AATTTATTGGAGAAGTTTCA+TGG - chr7_4:36014684-36014703 Msa1151430:intron 25.0%
! ACAATCTCATGAAACAATAT+AGG + chr7_4:36012637-36012656 None:intergenic 25.0%
!!! TAATTTTAACCTATCAGTCA+TGG + chr7_4:36012725-36012744 None:intergenic 25.0%
!! CGTCTTTCAATTAAATTTTG+TGG - chr7_4:36012886-36012905 Msa1151430:intron 25.0%
!!! ATTACTTTGGCTTTATTTCT+AGG + chr7_4:36013160-36013179 None:intergenic 25.0%
! AAAACTAAATGGACATTCTT+AGG - chr7_4:36013371-36013390 Msa1151430:intron 25.0%
! ACAACTAAAGGAATATAAAG+AGG - chr7_4:36013462-36013481 Msa1151430:intron 25.0%
! AATATAAAGAGGCCAAAAAT+AGG - chr7_4:36013473-36013492 Msa1151430:intron 25.0%
!!! GCTTGTTTTAAATTTCTGAA+GGG + chr7_4:36013770-36013789 None:intergenic 25.0%
! AAGAAATATGATACTTGCAA+GGG + chr7_4:36013819-36013838 None:intergenic 25.0%
! TAAGAAATATGATACTTGCA+AGG + chr7_4:36013820-36013839 None:intergenic 25.0%
! TATAATAGAATAAACCCATG+GGG + chr7_4:36013889-36013908 None:intergenic 25.0%
! GTATAATAGAATAAACCCAT+GGG + chr7_4:36013890-36013909 None:intergenic 25.0%
! TGTATAATAGAATAAACCCA+TGG + chr7_4:36013891-36013910 None:intergenic 25.0%
! TATTGTTGGAAATCAAAGTA+GGG + chr7_4:36013970-36013989 None:intergenic 25.0%
!!! TTGATGTTGGAATTATTTTG+AGG + chr7_4:36014015-36014034 None:intergenic 25.0%
!!! TATACAATTAAAGTGTCGTT+TGG - chr7_4:36014051-36014070 Msa1151430:intron 25.0%
!! TCAAAGATTTATGGGTTTTA+TGG - chr7_4:36014252-36014271 Msa1151430:intron 25.0%
!!! TTATGGGTTTTATGGATTTA+TGG - chr7_4:36014260-36014279 Msa1151430:intron 25.0%
!!! TATGGGTTTTATGGATTTAT+GGG - chr7_4:36014261-36014280 Msa1151430:intron 25.0%
! ATCAACCATCTATATGATAT+TGG + chr7_4:36014300-36014319 None:intergenic 25.0%
!! TTGAGCCAATATTTTCAAAT+TGG - chr7_4:36014321-36014340 Msa1151430:intron 25.0%
! TAATATCATAGAAAATCGTG+AGG + chr7_4:36014447-36014466 None:intergenic 25.0%
! GGAGAGTTCAAAAAATTTAT+TGG - chr7_4:36014671-36014690 Msa1151430:intron 25.0%
! AATTTATTGGAGAAGTTTCA+TGG - chr7_4:36014684-36014703 Msa1151430:intron 25.0%
TTCAACAAAGCAAAACAATG+TGG + chr7_4:36012763-36012782 None:intergenic 30.0%
ATTACTTAGGCTATGTCTTT+AGG + chr7_4:36012852-36012871 None:intergenic 30.0%
AGTTTCGATTATAGTGACTA+GGG + chr7_4:36013060-36013079 None:intergenic 30.0%
TAGTTTCGATTATAGTGACT+AGG + chr7_4:36013061-36013080 None:intergenic 30.0%
TCACTATAATCGAAACTACT+TGG - chr7_4:36013063-36013082 Msa1151430:intron 30.0%
! TTTTCTTTTCGGTACAAAAG+AGG - chr7_4:36013324-36013343 Msa1151430:intron 30.0%
! TTTCTTTTCGGTACAAAAGA+GGG - chr7_4:36013325-36013344 Msa1151430:intron 30.0%
! TTCTTTTTACGATATGTCCA+GGG + chr7_4:36013405-36013424 None:intergenic 30.0%
CTTTAGTTGTACTAATGTTG+AGG + chr7_4:36013452-36013471 None:intergenic 30.0%
CTCAACATTAGTACAACTAA+AGG - chr7_4:36013450-36013469 Msa1151430:intron 30.0%
! TTTAAATTTCTGAAGGGAGA+TGG + chr7_4:36013764-36013783 None:intergenic 30.0%
!!! GGCTTGTTTTAAATTTCTGA+AGG + chr7_4:36013771-36013790 None:intergenic 30.0%
ATTGTTGGAAATCAAAGTAG+GGG + chr7_4:36013969-36013988 None:intergenic 30.0%
GTATTGTTGGAAATCAAAGT+AGG + chr7_4:36013971-36013990 None:intergenic 30.0%
AATGATGACACTTGTATTGT+TGG + chr7_4:36013984-36014003 None:intergenic 30.0%
TATTTCAAGCATCAACTAGA+TGG - chr7_4:36014210-36014229 Msa1151430:intron 30.0%
AGCAGAACTTCAAAGATTTA+TGG - chr7_4:36014243-36014262 Msa1151430:intron 30.0%
GCAGAACTTCAAAGATTTAT+GGG - chr7_4:36014244-36014263 Msa1151430:intron 30.0%
! AGCCAATATTTTCAAATTGG+TGG - chr7_4:36014324-36014343 Msa1151430:intron 30.0%
CACCACCAATTTGAAAATAT+TGG + chr7_4:36014329-36014348 None:intergenic 30.0%
! CAATTCTGGTTATTCATCTA+TGG + chr7_4:36014356-36014375 None:intergenic 30.0%
! GACGATCTATTTCAATTTTC+TGG - chr7_4:36014631-36014650 Msa1151430:intron 30.0%
TTCAACAAAGCAAAACAATG+TGG + chr7_4:36012763-36012782 None:intergenic 30.0%
ATTACTTAGGCTATGTCTTT+AGG + chr7_4:36012852-36012871 None:intergenic 30.0%
AGTTTCGATTATAGTGACTA+GGG + chr7_4:36013060-36013079 None:intergenic 30.0%
TAGTTTCGATTATAGTGACT+AGG + chr7_4:36013061-36013080 None:intergenic 30.0%
TCACTATAATCGAAACTACT+TGG - chr7_4:36013063-36013082 Msa1151430:intron 30.0%
! TTTTCTTTTCGGTACAAAAG+AGG - chr7_4:36013324-36013343 Msa1151430:intron 30.0%
! TTTCTTTTCGGTACAAAAGA+GGG - chr7_4:36013325-36013344 Msa1151430:intron 30.0%
! TTCTTTTTACGATATGTCCA+GGG + chr7_4:36013405-36013424 None:intergenic 30.0%
CTTTAGTTGTACTAATGTTG+AGG + chr7_4:36013452-36013471 None:intergenic 30.0%
CTCAACATTAGTACAACTAA+AGG - chr7_4:36013450-36013469 Msa1151430:intron 30.0%
! TTTAAATTTCTGAAGGGAGA+TGG + chr7_4:36013764-36013783 None:intergenic 30.0%
!!! GGCTTGTTTTAAATTTCTGA+AGG + chr7_4:36013771-36013790 None:intergenic 30.0%
ATTGTTGGAAATCAAAGTAG+GGG + chr7_4:36013969-36013988 None:intergenic 30.0%
GTATTGTTGGAAATCAAAGT+AGG + chr7_4:36013971-36013990 None:intergenic 30.0%
AATGATGACACTTGTATTGT+TGG + chr7_4:36013984-36014003 None:intergenic 30.0%
TATTTCAAGCATCAACTAGA+TGG - chr7_4:36014210-36014229 Msa1151430:intron 30.0%
AGCAGAACTTCAAAGATTTA+TGG - chr7_4:36014243-36014262 Msa1151430:intron 30.0%
GCAGAACTTCAAAGATTTAT+GGG - chr7_4:36014244-36014263 Msa1151430:intron 30.0%
! AGCCAATATTTTCAAATTGG+TGG - chr7_4:36014324-36014343 Msa1151430:intron 30.0%
CACCACCAATTTGAAAATAT+TGG + chr7_4:36014329-36014348 None:intergenic 30.0%
! CAATTCTGGTTATTCATCTA+TGG + chr7_4:36014356-36014375 None:intergenic 30.0%
! GACGATCTATTTCAATTTTC+TGG - chr7_4:36014631-36014650 Msa1151430:intron 30.0%
TCACAAAGAATTCAGAGCAA+GGG - chr7_4:36012438-36012457 Msa1151430:CDS 35.0%
! TTTTAGATTGGGTGTTAGCT+AGG - chr7_4:36012809-36012828 Msa1151430:intron 35.0%
TTTAGATTGGGTGTTAGCTA+GGG - chr7_4:36012810-36012829 Msa1151430:intron 35.0%
TAGCCTAAGTAATGCTCATT+TGG - chr7_4:36012859-36012878 Msa1151430:intron 35.0%
AAGCCAAATGAGCATTACTT+AGG + chr7_4:36012865-36012884 None:intergenic 35.0%
ACCTACATCTTGTAATGTGT+GGG + chr7_4:36012982-36013001 None:intergenic 35.0%
GTTTCGATTATAGTGACTAG+GGG + chr7_4:36013059-36013078 None:intergenic 35.0%
!!! ACCTTACAAACTGGTTTTGT+GGG - chr7_4:36013204-36013223 Msa1151430:intron 35.0%
! CTTCTTTTTACGATATGTCC+AGG + chr7_4:36013406-36013425 None:intergenic 35.0%
! GTTGATTGAGAGCCTATTTT+TGG + chr7_4:36013488-36013507 None:intergenic 35.0%
! TAGGCTCTCAATCAACATTT+TGG - chr7_4:36013492-36013511 Msa1151430:intron 35.0%
! AGGCTCTCAATCAACATTTT+GGG - chr7_4:36013493-36013512 Msa1151430:intron 35.0%
GTTCTCTCCTATCAAAACTA+AGG - chr7_4:36013673-36013692 Msa1151430:intron 35.0%
!!! GCATGTACCTTAGTTTTGAT+AGG + chr7_4:36013683-36013702 None:intergenic 35.0%
GATGGATCAAACGTTACATT+AGG + chr7_4:36013746-36013765 None:intergenic 35.0%
AAATATGATACTTGCAAGGG+AGG + chr7_4:36013816-36013835 None:intergenic 35.0%
TTGTTGGAAATCAAAGTAGG+GGG + chr7_4:36013968-36013987 None:intergenic 35.0%
CTCAACTGAGTCTGTAAATA+AGG + chr7_4:36014119-36014138 None:intergenic 35.0%
CTTATTTACAGACTCAGTTG+AGG - chr7_4:36014117-36014136 Msa1151430:intron 35.0%
! TATGACGTTTTGCACTATTG+AGG - chr7_4:36014167-36014186 Msa1151430:intron 35.0%
TCTGGTTATTCATCTATGGT+TGG + chr7_4:36014352-36014371 None:intergenic 35.0%
!! ACCAGAATTGCTTTTCATTG+TGG - chr7_4:36014366-36014385 Msa1151430:intron 35.0%
ACCACAATGAAAAGCAATTC+TGG + chr7_4:36014370-36014389 None:intergenic 35.0%
TCATAGAAAATCGTGAGGTA+AGG + chr7_4:36014442-36014461 None:intergenic 35.0%
ATGACAACAATGACAATGCT+AGG + chr7_4:36014523-36014542 None:intergenic 35.0%
GTCATTGTTGTCATTGTTTC+AGG - chr7_4:36014529-36014548 Msa1151430:intron 35.0%
AAAATCCAGCTTTCGAGATA+TGG + chr7_4:36014611-36014630 None:intergenic 35.0%
!! TCAATTTTCTGGTGTTTGCA+AGG - chr7_4:36014642-36014661 Msa1151430:intron 35.0%
TTGAACAAGTAGTGGTGATT+GGG + chr7_4:36014713-36014732 None:intergenic 35.0%
TTTGAACAAGTAGTGGTGAT+TGG + chr7_4:36014714-36014733 None:intergenic 35.0%
GAAGTTGTTTGAACAAGTAG+TGG + chr7_4:36014721-36014740 None:intergenic 35.0%
TCACAAAGAATTCAGAGCAA+GGG - chr7_4:36012438-36012457 Msa1151430:CDS 35.0%
! TTTTAGATTGGGTGTTAGCT+AGG - chr7_4:36012809-36012828 Msa1151430:intron 35.0%
TTTAGATTGGGTGTTAGCTA+GGG - chr7_4:36012810-36012829 Msa1151430:intron 35.0%
TAGCCTAAGTAATGCTCATT+TGG - chr7_4:36012859-36012878 Msa1151430:intron 35.0%
AAGCCAAATGAGCATTACTT+AGG + chr7_4:36012865-36012884 None:intergenic 35.0%
ACCTACATCTTGTAATGTGT+GGG + chr7_4:36012982-36013001 None:intergenic 35.0%
GTTTCGATTATAGTGACTAG+GGG + chr7_4:36013059-36013078 None:intergenic 35.0%
!!! ACCTTACAAACTGGTTTTGT+GGG - chr7_4:36013204-36013223 Msa1151430:intron 35.0%
! CTTCTTTTTACGATATGTCC+AGG + chr7_4:36013406-36013425 None:intergenic 35.0%
! GTTGATTGAGAGCCTATTTT+TGG + chr7_4:36013488-36013507 None:intergenic 35.0%
! TAGGCTCTCAATCAACATTT+TGG - chr7_4:36013492-36013511 Msa1151430:intron 35.0%
! AGGCTCTCAATCAACATTTT+GGG - chr7_4:36013493-36013512 Msa1151430:intron 35.0%
GTTCTCTCCTATCAAAACTA+AGG - chr7_4:36013673-36013692 Msa1151430:intron 35.0%
!!! GCATGTACCTTAGTTTTGAT+AGG + chr7_4:36013683-36013702 None:intergenic 35.0%
GATGGATCAAACGTTACATT+AGG + chr7_4:36013746-36013765 None:intergenic 35.0%
AAATATGATACTTGCAAGGG+AGG + chr7_4:36013816-36013835 None:intergenic 35.0%
TTGTTGGAAATCAAAGTAGG+GGG + chr7_4:36013968-36013987 None:intergenic 35.0%
CTCAACTGAGTCTGTAAATA+AGG + chr7_4:36014119-36014138 None:intergenic 35.0%
CTTATTTACAGACTCAGTTG+AGG - chr7_4:36014117-36014136 Msa1151430:intron 35.0%
! TATGACGTTTTGCACTATTG+AGG - chr7_4:36014167-36014186 Msa1151430:intron 35.0%
TCTGGTTATTCATCTATGGT+TGG + chr7_4:36014352-36014371 None:intergenic 35.0%
!! ACCAGAATTGCTTTTCATTG+TGG - chr7_4:36014366-36014385 Msa1151430:intron 35.0%
ACCACAATGAAAAGCAATTC+TGG + chr7_4:36014370-36014389 None:intergenic 35.0%
TCATAGAAAATCGTGAGGTA+AGG + chr7_4:36014442-36014461 None:intergenic 35.0%
ATGACAACAATGACAATGCT+AGG + chr7_4:36014523-36014542 None:intergenic 35.0%
GTCATTGTTGTCATTGTTTC+AGG - chr7_4:36014529-36014548 Msa1151430:intron 35.0%
AAAATCCAGCTTTCGAGATA+TGG + chr7_4:36014611-36014630 None:intergenic 35.0%
!! TCAATTTTCTGGTGTTTGCA+AGG - chr7_4:36014642-36014661 Msa1151430:intron 35.0%
TTGAACAAGTAGTGGTGATT+GGG + chr7_4:36014713-36014732 None:intergenic 35.0%
TTTGAACAAGTAGTGGTGAT+TGG + chr7_4:36014714-36014733 None:intergenic 35.0%
GAAGTTGTTTGAACAAGTAG+TGG + chr7_4:36014721-36014740 None:intergenic 35.0%
CTCACAAAGAATTCAGAGCA+AGG - chr7_4:36012437-36012456 Msa1151430:CDS 40.0%
GTGACAGAGATGATTCTAAG+AGG - chr7_4:36012462-36012481 Msa1151430:CDS 40.0%
TCCTCAATCATCGTCAAGTA+CGG - chr7_4:36012493-36012512 Msa1151430:CDS 40.0%
TTAGATTGGGTGTTAGCTAG+GGG - chr7_4:36012811-36012830 Msa1151430:intron 40.0%
TCCTGATCGCATATCTAAGA+TGG - chr7_4:36012922-36012941 Msa1151430:intron 40.0%
ACCATCTTAGATATGCGATC+AGG + chr7_4:36012926-36012945 None:intergenic 40.0%
ACCCACACATTACAAGATGT+AGG - chr7_4:36012978-36012997 Msa1151430:intron 40.0%
CACCTACATCTTGTAATGTG+TGG + chr7_4:36012983-36013002 None:intergenic 40.0%
GATTATAGTGACTAGGGGAA+GGG + chr7_4:36013054-36013073 None:intergenic 40.0%
ATCTCATTGCACCCAGAATA+AGG + chr7_4:36013119-36013138 None:intergenic 40.0%
GCATTTCTCACCTTACAAAC+TGG - chr7_4:36013195-36013214 Msa1151430:intron 40.0%
!!! CACCTTACAAACTGGTTTTG+TGG - chr7_4:36013203-36013222 Msa1151430:intron 40.0%
!!! CCTTACAAACTGGTTTTGTG+GGG - chr7_4:36013205-36013224 Msa1151430:intron 40.0%
AACTGAAGGCAAGCATAACA+TGG + chr7_4:36013297-36013316 None:intergenic 40.0%
AGTCTATGAAGCTCACTATG+AGG - chr7_4:36013424-36013443 Msa1151430:intron 40.0%
! GTGGCATATTTGTCGTCTTT+TGG + chr7_4:36013563-36013582 None:intergenic 40.0%
CAAATATGCCACACCAAAAC+AGG - chr7_4:36013571-36013590 Msa1151430:intron 40.0%
! ACTTTTCATGCCGAAATCTG+GGG + chr7_4:36013705-36013724 None:intergenic 40.0%
! CACTTTTCATGCCGAAATCT+GGG + chr7_4:36013706-36013725 None:intergenic 40.0%
! ACACTTTTCATGCCGAAATC+TGG + chr7_4:36013707-36013726 None:intergenic 40.0%
! GGAGAGATGTAATGATGATG+AGG + chr7_4:36013792-36013811 None:intergenic 40.0%
TTAAGCTTCATCCATCCAAC+AGG - chr7_4:36013837-36013856 Msa1151430:intron 40.0%
TAAGCTTCATCCATCCAACA+GGG - chr7_4:36013838-36013857 Msa1151430:intron 40.0%
ACCAATATAGATAGTCCCCA+TGG - chr7_4:36013871-36013890 Msa1151430:intron 40.0%
CCAATATAGATAGTCCCCAT+GGG - chr7_4:36013872-36013891 Msa1151430:intron 40.0%
! GTTTGGTTGTTTCGTTGTGT+GGG - chr7_4:36014068-36014087 Msa1151430:intron 40.0%
!! TGTTGACTTCAGCGAACTTT+CGG - chr7_4:36014570-36014589 Msa1151430:intron 40.0%
TGATACCATATCTCGAAAGC+TGG - chr7_4:36014603-36014622 Msa1151430:intron 40.0%
CTCACAAAGAATTCAGAGCA+AGG - chr7_4:36012437-36012456 Msa1151430:CDS 40.0%
GTGACAGAGATGATTCTAAG+AGG - chr7_4:36012462-36012481 Msa1151430:CDS 40.0%
TCCTCAATCATCGTCAAGTA+CGG - chr7_4:36012493-36012512 Msa1151430:CDS 40.0%
TTAGATTGGGTGTTAGCTAG+GGG - chr7_4:36012811-36012830 Msa1151430:intron 40.0%
TCCTGATCGCATATCTAAGA+TGG - chr7_4:36012922-36012941 Msa1151430:intron 40.0%
ACCATCTTAGATATGCGATC+AGG + chr7_4:36012926-36012945 None:intergenic 40.0%
ACCCACACATTACAAGATGT+AGG - chr7_4:36012978-36012997 Msa1151430:intron 40.0%
CACCTACATCTTGTAATGTG+TGG + chr7_4:36012983-36013002 None:intergenic 40.0%
GATTATAGTGACTAGGGGAA+GGG + chr7_4:36013054-36013073 None:intergenic 40.0%
ATCTCATTGCACCCAGAATA+AGG + chr7_4:36013119-36013138 None:intergenic 40.0%
GCATTTCTCACCTTACAAAC+TGG - chr7_4:36013195-36013214 Msa1151430:intron 40.0%
!!! CACCTTACAAACTGGTTTTG+TGG - chr7_4:36013203-36013222 Msa1151430:intron 40.0%
!!! CCTTACAAACTGGTTTTGTG+GGG - chr7_4:36013205-36013224 Msa1151430:intron 40.0%
AACTGAAGGCAAGCATAACA+TGG + chr7_4:36013297-36013316 None:intergenic 40.0%
AGTCTATGAAGCTCACTATG+AGG - chr7_4:36013424-36013443 Msa1151430:intron 40.0%
! GTGGCATATTTGTCGTCTTT+TGG + chr7_4:36013563-36013582 None:intergenic 40.0%
CAAATATGCCACACCAAAAC+AGG - chr7_4:36013571-36013590 Msa1151430:intron 40.0%
! ACTTTTCATGCCGAAATCTG+GGG + chr7_4:36013705-36013724 None:intergenic 40.0%
! CACTTTTCATGCCGAAATCT+GGG + chr7_4:36013706-36013725 None:intergenic 40.0%
! ACACTTTTCATGCCGAAATC+TGG + chr7_4:36013707-36013726 None:intergenic 40.0%
! GGAGAGATGTAATGATGATG+AGG + chr7_4:36013792-36013811 None:intergenic 40.0%
TTAAGCTTCATCCATCCAAC+AGG - chr7_4:36013837-36013856 Msa1151430:intron 40.0%
TAAGCTTCATCCATCCAACA+GGG - chr7_4:36013838-36013857 Msa1151430:intron 40.0%
ACCAATATAGATAGTCCCCA+TGG - chr7_4:36013871-36013890 Msa1151430:intron 40.0%
CCAATATAGATAGTCCCCAT+GGG - chr7_4:36013872-36013891 Msa1151430:intron 40.0%
! GTTTGGTTGTTTCGTTGTGT+GGG - chr7_4:36014068-36014087 Msa1151430:intron 40.0%
!! TGTTGACTTCAGCGAACTTT+CGG - chr7_4:36014570-36014589 Msa1151430:intron 40.0%
TGATACCATATCTCGAAAGC+TGG - chr7_4:36014603-36014622 Msa1151430:intron 40.0%
ACCGTACTTGACGATGATTG+AGG + chr7_4:36012497-36012516 None:intergenic 45.0%
GCAGTTGAACCATGACTGAT+AGG - chr7_4:36012713-36012732 Msa1151430:intron 45.0%
CGATTATAGTGACTAGGGGA+AGG + chr7_4:36013055-36013074 None:intergenic 45.0%
ACTACTTGGAGCTTCCTTCA+TGG - chr7_4:36013077-36013096 Msa1151430:intron 45.0%
TCCAACGCCTTCCTTATTCT+GGG - chr7_4:36013105-36013124 Msa1151430:intron 45.0%
CATTGCACCCAGAATAAGGA+AGG + chr7_4:36013115-36013134 None:intergenic 45.0%
CCCCACAAAACCAGTTTGTA+AGG + chr7_4:36013208-36013227 None:intergenic 45.0%
!!! ACAAACTGGTTTTGTGGGGT+TGG - chr7_4:36013209-36013228 Msa1151430:intron 45.0%
!!! CAAACTGGTTTTGTGGGGTT+GGG - chr7_4:36013210-36013229 Msa1151430:intron 45.0%
!! TAGTGGGGTGTTTCCTGTTT+TGG + chr7_4:36013587-36013606 None:intergenic 45.0%
AAGGTACATGCCCCAGATTT+CGG - chr7_4:36013692-36013711 Msa1151430:intron 45.0%
TATGATACTTGCAAGGGAGG+TGG + chr7_4:36013813-36013832 None:intergenic 45.0%
AAGCTTCATCCATCCAACAG+GGG - chr7_4:36013839-36013858 Msa1151430:intron 45.0%
CCCATGGGGACTATCTATAT+TGG + chr7_4:36013875-36013894 None:intergenic 45.0%
! CGTTTGGTTGTTTCGTTGTG+TGG - chr7_4:36014067-36014086 Msa1151430:intron 45.0%
TTCGTTGTGTGGGATTGTGA+TGG - chr7_4:36014078-36014097 Msa1151430:intron 45.0%
! TTTCTGGTGTTTGCAAGGAG+TGG - chr7_4:36014647-36014666 Msa1151430:intron 45.0%
ACCGTACTTGACGATGATTG+AGG + chr7_4:36012497-36012516 None:intergenic 45.0%
GCAGTTGAACCATGACTGAT+AGG - chr7_4:36012713-36012732 Msa1151430:intron 45.0%
CGATTATAGTGACTAGGGGA+AGG + chr7_4:36013055-36013074 None:intergenic 45.0%
ACTACTTGGAGCTTCCTTCA+TGG - chr7_4:36013077-36013096 Msa1151430:intron 45.0%
TCCAACGCCTTCCTTATTCT+GGG - chr7_4:36013105-36013124 Msa1151430:intron 45.0%
CATTGCACCCAGAATAAGGA+AGG + chr7_4:36013115-36013134 None:intergenic 45.0%
CCCCACAAAACCAGTTTGTA+AGG + chr7_4:36013208-36013227 None:intergenic 45.0%
!!! ACAAACTGGTTTTGTGGGGT+TGG - chr7_4:36013209-36013228 Msa1151430:intron 45.0%
!!! CAAACTGGTTTTGTGGGGTT+GGG - chr7_4:36013210-36013229 Msa1151430:intron 45.0%
!! TAGTGGGGTGTTTCCTGTTT+TGG + chr7_4:36013587-36013606 None:intergenic 45.0%
AAGGTACATGCCCCAGATTT+CGG - chr7_4:36013692-36013711 Msa1151430:intron 45.0%
TATGATACTTGCAAGGGAGG+TGG + chr7_4:36013813-36013832 None:intergenic 45.0%
AAGCTTCATCCATCCAACAG+GGG - chr7_4:36013839-36013858 Msa1151430:intron 45.0%
CCCATGGGGACTATCTATAT+TGG + chr7_4:36013875-36013894 None:intergenic 45.0%
! CGTTTGGTTGTTTCGTTGTG+TGG - chr7_4:36014067-36014086 Msa1151430:intron 45.0%
TTCGTTGTGTGGGATTGTGA+TGG - chr7_4:36014078-36014097 Msa1151430:intron 45.0%
! TTTCTGGTGTTTGCAAGGAG+TGG - chr7_4:36014647-36014666 Msa1151430:intron 45.0%
!! AAATTTGAAAAAATATAAAT+TGG - chr7_4:36012673-36012692 Msa1151430:intron 5.0%
!! AATTTGAAAAAATATAAATT+GGG - chr7_4:36012674-36012693 Msa1151430:intron 5.0%
!! AAATTTGAAAAAATATAAAT+TGG - chr7_4:36012673-36012692 Msa1151430:intron 5.0%
!! AATTTGAAAAAATATAAATT+GGG - chr7_4:36012674-36012693 Msa1151430:intron 5.0%
GTGCAAAGTCGTGTACGTGA+GGG - chr7_4:36013000-36013019 Msa1151430:intron 50.0%
TGCAAAGTCGTGTACGTGAG+GGG - chr7_4:36013001-36013020 Msa1151430:intron 50.0%
!! CAGAATAAGGAAGGCGTTGG+AGG + chr7_4:36013106-36013125 None:intergenic 50.0%
CTCCAACGCCTTCCTTATTC+TGG - chr7_4:36013104-36013123 Msa1151430:intron 50.0%
! ACCCAGAATAAGGAAGGCGT+TGG + chr7_4:36013109-36013128 None:intergenic 50.0%
ATTCTTAGGCATGCAAGCCC+TGG - chr7_4:36013385-36013404 Msa1151430:intron 50.0%
!!! GGGTGTTTCCTGTTTTGGTG+TGG + chr7_4:36013582-36013601 None:intergenic 50.0%
TCTAAGAGACCCCTGTTGGA+TGG + chr7_4:36013851-36013870 None:intergenic 50.0%
!! TGGTTCTAAGAGACCCCTGT+TGG + chr7_4:36013855-36013874 None:intergenic 50.0%
GTGCAAAGTCGTGTACGTGA+GGG - chr7_4:36013000-36013019 Msa1151430:intron 50.0%
TGCAAAGTCGTGTACGTGAG+GGG - chr7_4:36013001-36013020 Msa1151430:intron 50.0%
!! CAGAATAAGGAAGGCGTTGG+AGG + chr7_4:36013106-36013125 None:intergenic 50.0%
CTCCAACGCCTTCCTTATTC+TGG - chr7_4:36013104-36013123 Msa1151430:intron 50.0%
! ACCCAGAATAAGGAAGGCGT+TGG + chr7_4:36013109-36013128 None:intergenic 50.0%
ATTCTTAGGCATGCAAGCCC+TGG - chr7_4:36013385-36013404 Msa1151430:intron 50.0%
!!! GGGTGTTTCCTGTTTTGGTG+TGG + chr7_4:36013582-36013601 None:intergenic 50.0%
TCTAAGAGACCCCTGTTGGA+TGG + chr7_4:36013851-36013870 None:intergenic 50.0%
!! TGGTTCTAAGAGACCCCTGT+TGG + chr7_4:36013855-36013874 None:intergenic 50.0%
GGTGCAAAGTCGTGTACGTG+AGG - chr7_4:36012999-36013018 Msa1151430:intron 55.0%
! CTAGGGGAAGGGCGCAATTA+AGG + chr7_4:36013043-36013062 None:intergenic 55.0%
CTGGTGTTTGCAAGGAGTGG+AGG - chr7_4:36014650-36014669 Msa1151430:intron 55.0%
!! GCGCGGTAAGCTCGTTTTTC+AGG + chr7_4:36014778-36014797 None:intergenic 55.0%
GGTGCAAAGTCGTGTACGTG+AGG - chr7_4:36012999-36013018 Msa1151430:intron 55.0%
! CTAGGGGAAGGGCGCAATTA+AGG + chr7_4:36013043-36013062 None:intergenic 55.0%
CTGGTGTTTGCAAGGAGTGG+AGG - chr7_4:36014650-36014669 Msa1151430:intron 55.0%
!! GCGCGGTAAGCTCGTTTTTC+AGG + chr7_4:36014778-36014797 None:intergenic 55.0%
! GGCGTTGGAGGTTGCCATGA+AGG + chr7_4:36013094-36013113 None:intergenic 60.0%
! GGCGTTGGAGGTTGCCATGA+AGG + chr7_4:36013094-36013113 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 36012419 36014805 36012419 ID=Msa1151430;Name=Msa1151430
chr7_4 mRNA 36012419 36014805 36012419 ID=Msa1151430-mRNA-1;Parent=Msa1151430;Name=Msa1151430-mRNA-1;_AED=0.58;_eAED=1.00;_QI=0|0|0|0.5|0|0|2|0|116
chr7_4 exon 36014710 36014805 36014710 ID=Msa1151430-mRNA-1:exon:8470;Parent=Msa1151430-mRNA-1
chr7_4 exon 36012419 36012673 36012419 ID=Msa1151430-mRNA-1:exon:8469;Parent=Msa1151430-mRNA-1
chr7_4 CDS 36014710 36014805 36014710 ID=Msa1151430-mRNA-1:cds;Parent=Msa1151430-mRNA-1
chr7_4 CDS 36012419 36012673 36012419 ID=Msa1151430-mRNA-1:cds;Parent=Msa1151430-mRNA-1
Gene Sequence

>Msa1151430

ATGCAAGTTGACAAGATGCTCACAAAGAATTCAGAGCAAGGGAGTGACAGAGATGATTCTAAGAGGTCTATTGTTCCTCAATCATCGTCAAGTACGGTAAAGAAGCGAAAAGTGTTGTTGACTTCAGCGAACTTTCGGATAATGTACTTGATACCATATCTCGAAAGCTGGATTTTGACGATCTATTTCAATTTTCTGGTGTTTGCAAGGAGTGGAGGAGAGTTCAAAAAATTTATTGGAGAAGTTTCATGGTATCCCAATCACCACTACTTGTTCAAACAACTTCATATGCAAAGAAATTTTGTTCTTTTTATAGCATACCTGAAAAACGAGCTTACCGCGCTAAGATGA

Protein sequence

>Msa1151430

MQVDKMLTKNSEQGSDRDDSKRSIVPQSSSSTVKKRKVLLTSANFRIMYLIPYLESWILTIYFNFLVFARSGGEFKKFIGEVSWYPNHHYLFKQLHMQRNFVLFIAYLKNELTALR*