AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0267000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 15 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTATTGGAGAAGTTTCA+TGG 0.356631 2_2:+68322665 Msa0267000:CDS
AAAATCCAGCTTTCGAGATA+TGG 0.371968 2_2:-68322589 None:intergenic
TGTTGACTTCAGCGAACTTT+CGG 0.382328 2_2:+68322551 Msa0267000:CDS
TTTGAACAAGTAGTGGTGAT+TGG 0.419006 2_2:-68322692 None:intergenic
AATTCAGAGCAAGGGAGTGA+TGG 0.492238 2_2:+68320409 Msa0267000:CDS
TTGAACAAGTAGTGGTGATT+GGG 0.499146 2_2:-68322691 None:intergenic
TGATACCATATCTCGAAAGC+TGG 0.511555 2_2:+68322584 Msa0267000:CDS
TCCTCAATCATCGTCAAGTA+CGG 0.517347 2_2:+68320456 Msa0267000:CDS
TTTCTGGTGTTTGCAAGGAG+TGG 0.522122 2_2:+68322628 Msa0267000:CDS
CTGGTGTTTGCAAGGAGTGG+AGG 0.526377 2_2:+68322631 Msa0267000:CDS
GTGATGGAGATGATTCTAAG+AGG 0.586614 2_2:+68320425 Msa0267000:CDS
GAAGTTGTTTGAACAAGTAG+TGG 0.607939 2_2:-68322699 None:intergenic
CTCACAAAGAATTCAGAGCA+AGG 0.609873 2_2:+68320400 Msa0267000:CDS
ACCGTACTTGACGATGATTG+AGG 0.635962 2_2:-68320457 None:intergenic
TCACAAAGAATTCAGAGCAA+GGG 0.646539 2_2:+68320401 Msa0267000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAGAATTAGAAATTA+TGG - chr2_2:68321222-68321241 None:intergenic 10.0%
!!! TGAAATATTACATATTTTTA+GGG + chr2_2:68321251-68321270 Msa0267000:intron 10.0%
!! ATTAATAGAATTAGAAATTA+TGG - chr2_2:68321222-68321241 None:intergenic 10.0%
!!! TGAAATATTACATATTTTTA+GGG + chr2_2:68321251-68321270 Msa0267000:intron 10.0%
!!! GTGAAATATTACATATTTTT+AGG + chr2_2:68321250-68321269 Msa0267000:intron 15.0%
!!! AGTTTATTCTTTTTTCTTTT+CGG + chr2_2:68321294-68321313 Msa0267000:intron 15.0%
!!! TAGTTTTTTAGTTTTTTCTT+TGG - chr2_2:68321339-68321358 None:intergenic 15.0%
!! GAAAAAACTAAAAAACTAAA+TGG + chr2_2:68321341-68321360 Msa0267000:intron 15.0%
!!! TATATAAAAGCAATTTTAGT+GGG - chr2_2:68321584-68321603 None:intergenic 15.0%
!!! ATATATAAAAGCAATTTTAG+TGG - chr2_2:68321585-68321604 None:intergenic 15.0%
!!! GTGAAATATTACATATTTTT+AGG + chr2_2:68321250-68321269 Msa0267000:intron 15.0%
!!! AGTTTATTCTTTTTTCTTTT+CGG + chr2_2:68321294-68321313 Msa0267000:intron 15.0%
!!! TAGTTTTTTAGTTTTTTCTT+TGG - chr2_2:68321339-68321358 None:intergenic 15.0%
!! GAAAAAACTAAAAAACTAAA+TGG + chr2_2:68321341-68321360 Msa0267000:intron 15.0%
!!! TATATAAAAGCAATTTTAGT+GGG - chr2_2:68321584-68321603 None:intergenic 15.0%
!!! ATATATAAAAGCAATTTTAG+TGG - chr2_2:68321585-68321604 None:intergenic 15.0%
!!! ATTACATGATTGTTTTAGAT+TGG + chr2_2:68320778-68320797 Msa0267000:intron 20.0%
!!! TTACATGATTGTTTTAGATT+GGG + chr2_2:68320779-68320798 Msa0267000:intron 20.0%
!!! GTCTTTCAATTAAATTTTGT+GGG + chr2_2:68320868-68320887 Msa0267000:intron 20.0%
!!! TCTTTCAATTAAATTTTGTG+GGG + chr2_2:68320869-68320888 Msa0267000:intron 20.0%
!! ACTAATTATAAGCATTACTT+TGG - chr2_2:68321154-68321173 None:intergenic 20.0%
!! AAAGTAATGCTTATAATTAG+TGG + chr2_2:68321153-68321172 Msa0267000:intron 20.0%
!! AAGTAATGCTTATAATTAGT+GGG + chr2_2:68321154-68321173 Msa0267000:intron 20.0%
!! AAGAAAAAAGAATAAACTGA+AGG - chr2_2:68321292-68321311 None:intergenic 20.0%
!! AATATAAAGAAGCCAAAAAT+AGG + chr2_2:68321454-68321473 Msa0267000:intron 20.0%
!!! TTAGTTTTGTCATAATATGA+GGG - chr2_2:68321505-68321524 None:intergenic 20.0%
!!! TTTAGTTTTGTCATAATATG+AGG - chr2_2:68321506-68321525 None:intergenic 20.0%
!!! ATATAAAAGCAATTTTAGTG+GGG - chr2_2:68321583-68321602 None:intergenic 20.0%
!! ATAGATGATTAAATTGATGT+TGG - chr2_2:68322009-68322028 None:intergenic 20.0%
!!! TTTTTCCAATATCATATAGA+TGG + chr2_2:68322273-68322292 Msa0267000:intron 20.0%
!!! TGCACTTTTATTATTAACAT+TGG + chr2_2:68322472-68322491 Msa0267000:intron 20.0%
!!! GCACTTTTATTATTAACATT+GGG + chr2_2:68322473-68322492 Msa0267000:intron 20.0%
!!! ATTACATGATTGTTTTAGAT+TGG + chr2_2:68320778-68320797 Msa0267000:intron 20.0%
!!! TTACATGATTGTTTTAGATT+GGG + chr2_2:68320779-68320798 Msa0267000:intron 20.0%
!!! GTCTTTCAATTAAATTTTGT+GGG + chr2_2:68320868-68320887 Msa0267000:intron 20.0%
!!! TCTTTCAATTAAATTTTGTG+GGG + chr2_2:68320869-68320888 Msa0267000:intron 20.0%
!! ACTAATTATAAGCATTACTT+TGG - chr2_2:68321154-68321173 None:intergenic 20.0%
!! AAAGTAATGCTTATAATTAG+TGG + chr2_2:68321153-68321172 Msa0267000:intron 20.0%
!! AAGTAATGCTTATAATTAGT+GGG + chr2_2:68321154-68321173 Msa0267000:intron 20.0%
!! AAGAAAAAAGAATAAACTGA+AGG - chr2_2:68321292-68321311 None:intergenic 20.0%
!! AATATAAAGAAGCCAAAAAT+AGG + chr2_2:68321454-68321473 Msa0267000:intron 20.0%
!!! TTAGTTTTGTCATAATATGA+GGG - chr2_2:68321505-68321524 None:intergenic 20.0%
!!! TTTAGTTTTGTCATAATATG+AGG - chr2_2:68321506-68321525 None:intergenic 20.0%
!!! ATATAAAAGCAATTTTAGTG+GGG - chr2_2:68321583-68321602 None:intergenic 20.0%
!! ATAGATGATTAAATTGATGT+TGG - chr2_2:68322009-68322028 None:intergenic 20.0%
!!! TTTTTCCAATATCATATAGA+TGG + chr2_2:68322273-68322292 Msa0267000:intron 20.0%
!!! TGCACTTTTATTATTAACAT+TGG + chr2_2:68322472-68322491 Msa0267000:intron 20.0%
!!! GCACTTTTATTATTAACATT+GGG + chr2_2:68322473-68322492 Msa0267000:intron 20.0%
! ACAATCTCATGAAACAATAT+AGG - chr2_2:68320600-68320619 None:intergenic 25.0%
!!! TAATTTTAACCTATCAGTCA+TGG - chr2_2:68320688-68320707 None:intergenic 25.0%
!! CGTCTTTCAATTAAATTTTG+TGG + chr2_2:68320867-68320886 Msa0267000:intron 25.0%
!!! ATTACTTTGGCTTTATTTCT+AGG - chr2_2:68321141-68321160 None:intergenic 25.0%
! AAAACTAAATGGACATTCTT+AGG + chr2_2:68321352-68321371 Msa0267000:intron 25.0%
!!! CTCTAAAATTCACTTATACA+TGG - chr2_2:68321610-68321629 None:intergenic 25.0%
!!! GCTTGTTTTAAATTTCTGAA+GGG - chr2_2:68321751-68321770 None:intergenic 25.0%
! AAGAAATATGATACTTGCAA+GGG - chr2_2:68321800-68321819 None:intergenic 25.0%
! TAAGAAATATGATACTTGCA+AGG - chr2_2:68321801-68321820 None:intergenic 25.0%
! TATAATAGAATAAACCCATG+GGG - chr2_2:68321870-68321889 None:intergenic 25.0%
! GTATAATAGAATAAACCCAT+GGG - chr2_2:68321871-68321890 None:intergenic 25.0%
! TGTATAATAGAATAAACCCA+TGG - chr2_2:68321872-68321891 None:intergenic 25.0%
! TATTGTTGGAAATCAAAGTA+GGG - chr2_2:68321951-68321970 None:intergenic 25.0%
!!! TTGATGTTGGAATTATTTTG+AGG - chr2_2:68321996-68322015 None:intergenic 25.0%
!!! TATACAATTAAAGTGTCGTT+TGG + chr2_2:68322032-68322051 Msa0267000:intron 25.0%
!! TCAAAGATTTATGGGTTTTA+TGG + chr2_2:68322233-68322252 Msa0267000:intron 25.0%
! ATCAACCATCTATATGATAT+TGG - chr2_2:68322281-68322300 None:intergenic 25.0%
!! TTGAGCCAATATTTTCAAAT+TGG + chr2_2:68322302-68322321 Msa0267000:intron 25.0%
! TAATATCATAGAAAATCGTG+AGG - chr2_2:68322428-68322447 None:intergenic 25.0%
! GGAGAGTTCAAAAAATTTAT+TGG + chr2_2:68322652-68322671 Msa0267000:CDS 25.0%
! AATTTATTGGAGAAGTTTCA+TGG + chr2_2:68322665-68322684 Msa0267000:CDS 25.0%
! ACAATCTCATGAAACAATAT+AGG - chr2_2:68320600-68320619 None:intergenic 25.0%
!!! TAATTTTAACCTATCAGTCA+TGG - chr2_2:68320688-68320707 None:intergenic 25.0%
!! CGTCTTTCAATTAAATTTTG+TGG + chr2_2:68320867-68320886 Msa0267000:intron 25.0%
!!! ATTACTTTGGCTTTATTTCT+AGG - chr2_2:68321141-68321160 None:intergenic 25.0%
! AAAACTAAATGGACATTCTT+AGG + chr2_2:68321352-68321371 Msa0267000:intron 25.0%
!!! CTCTAAAATTCACTTATACA+TGG - chr2_2:68321610-68321629 None:intergenic 25.0%
!!! GCTTGTTTTAAATTTCTGAA+GGG - chr2_2:68321751-68321770 None:intergenic 25.0%
! AAGAAATATGATACTTGCAA+GGG - chr2_2:68321800-68321819 None:intergenic 25.0%
! TAAGAAATATGATACTTGCA+AGG - chr2_2:68321801-68321820 None:intergenic 25.0%
! TATAATAGAATAAACCCATG+GGG - chr2_2:68321870-68321889 None:intergenic 25.0%
! GTATAATAGAATAAACCCAT+GGG - chr2_2:68321871-68321890 None:intergenic 25.0%
! TGTATAATAGAATAAACCCA+TGG - chr2_2:68321872-68321891 None:intergenic 25.0%
! TATTGTTGGAAATCAAAGTA+GGG - chr2_2:68321951-68321970 None:intergenic 25.0%
!!! TTGATGTTGGAATTATTTTG+AGG - chr2_2:68321996-68322015 None:intergenic 25.0%
!!! TATACAATTAAAGTGTCGTT+TGG + chr2_2:68322032-68322051 Msa0267000:intron 25.0%
!! TCAAAGATTTATGGGTTTTA+TGG + chr2_2:68322233-68322252 Msa0267000:intron 25.0%
! ATCAACCATCTATATGATAT+TGG - chr2_2:68322281-68322300 None:intergenic 25.0%
!! TTGAGCCAATATTTTCAAAT+TGG + chr2_2:68322302-68322321 Msa0267000:intron 25.0%
! TAATATCATAGAAAATCGTG+AGG - chr2_2:68322428-68322447 None:intergenic 25.0%
! GGAGAGTTCAAAAAATTTAT+TGG + chr2_2:68322652-68322671 Msa0267000:CDS 25.0%
! AATTTATTGGAGAAGTTTCA+TGG + chr2_2:68322665-68322684 Msa0267000:CDS 25.0%
TTCAACAAAGCAAAACAATG+TGG - chr2_2:68320726-68320745 None:intergenic 30.0%
ATTACTTAGGCTATGTCTTT+AGG - chr2_2:68320833-68320852 None:intergenic 30.0%
AGTTTCGATTATAGTGACTA+GGG - chr2_2:68321041-68321060 None:intergenic 30.0%
TAGTTTCGATTATAGTGACT+AGG - chr2_2:68321042-68321061 None:intergenic 30.0%
TCACTATAATCGAAACTACT+TGG + chr2_2:68321044-68321063 Msa0267000:intron 30.0%
! TTTTCTTTTCGGTACAAAAG+AGG + chr2_2:68321305-68321324 Msa0267000:intron 30.0%
! TTTCTTTTCGGTACAAAAGA+GGG + chr2_2:68321306-68321325 Msa0267000:intron 30.0%
! TTCTTTTTACGATATGTCCA+GGG - chr2_2:68321386-68321405 None:intergenic 30.0%
CTTTAGTTGTACTAATGTTG+AGG - chr2_2:68321433-68321452 None:intergenic 30.0%
CTCAACATTAGTACAACTAA+AGG + chr2_2:68321431-68321450 Msa0267000:intron 30.0%
! TTTAAATTTCTGAAGGGAGA+TGG - chr2_2:68321745-68321764 None:intergenic 30.0%
!!! GGCTTGTTTTAAATTTCTGA+AGG - chr2_2:68321752-68321771 None:intergenic 30.0%
ATTGTTGGAAATCAAAGTAG+GGG - chr2_2:68321950-68321969 None:intergenic 30.0%
GTATTGTTGGAAATCAAAGT+AGG - chr2_2:68321952-68321971 None:intergenic 30.0%
AATGATGACACTTGTATTGT+TGG - chr2_2:68321965-68321984 None:intergenic 30.0%
TATTTCAAGCATCAACTAGA+TGG + chr2_2:68322191-68322210 Msa0267000:intron 30.0%
AGCAGAACTTCAAAGATTTA+TGG + chr2_2:68322224-68322243 Msa0267000:intron 30.0%
GCAGAACTTCAAAGATTTAT+GGG + chr2_2:68322225-68322244 Msa0267000:intron 30.0%
! AGCCAATATTTTCAAATTGG+TGG + chr2_2:68322305-68322324 Msa0267000:intron 30.0%
CACCACCAATTTGAAAATAT+TGG - chr2_2:68322310-68322329 None:intergenic 30.0%
! CAATTCTGGTTATTCATCTA+TGG - chr2_2:68322337-68322356 None:intergenic 30.0%
! GACGATCTATTTCAATTTTC+TGG + chr2_2:68322612-68322631 Msa0267000:CDS 30.0%
TTCAACAAAGCAAAACAATG+TGG - chr2_2:68320726-68320745 None:intergenic 30.0%
ATTACTTAGGCTATGTCTTT+AGG - chr2_2:68320833-68320852 None:intergenic 30.0%
AGTTTCGATTATAGTGACTA+GGG - chr2_2:68321041-68321060 None:intergenic 30.0%
TAGTTTCGATTATAGTGACT+AGG - chr2_2:68321042-68321061 None:intergenic 30.0%
TCACTATAATCGAAACTACT+TGG + chr2_2:68321044-68321063 Msa0267000:intron 30.0%
! TTTTCTTTTCGGTACAAAAG+AGG + chr2_2:68321305-68321324 Msa0267000:intron 30.0%
! TTTCTTTTCGGTACAAAAGA+GGG + chr2_2:68321306-68321325 Msa0267000:intron 30.0%
! TTCTTTTTACGATATGTCCA+GGG - chr2_2:68321386-68321405 None:intergenic 30.0%
CTTTAGTTGTACTAATGTTG+AGG - chr2_2:68321433-68321452 None:intergenic 30.0%
CTCAACATTAGTACAACTAA+AGG + chr2_2:68321431-68321450 Msa0267000:intron 30.0%
! TTTAAATTTCTGAAGGGAGA+TGG - chr2_2:68321745-68321764 None:intergenic 30.0%
!!! GGCTTGTTTTAAATTTCTGA+AGG - chr2_2:68321752-68321771 None:intergenic 30.0%
ATTGTTGGAAATCAAAGTAG+GGG - chr2_2:68321950-68321969 None:intergenic 30.0%
GTATTGTTGGAAATCAAAGT+AGG - chr2_2:68321952-68321971 None:intergenic 30.0%
AATGATGACACTTGTATTGT+TGG - chr2_2:68321965-68321984 None:intergenic 30.0%
TATTTCAAGCATCAACTAGA+TGG + chr2_2:68322191-68322210 Msa0267000:intron 30.0%
AGCAGAACTTCAAAGATTTA+TGG + chr2_2:68322224-68322243 Msa0267000:intron 30.0%
GCAGAACTTCAAAGATTTAT+GGG + chr2_2:68322225-68322244 Msa0267000:intron 30.0%
! AGCCAATATTTTCAAATTGG+TGG + chr2_2:68322305-68322324 Msa0267000:intron 30.0%
CACCACCAATTTGAAAATAT+TGG - chr2_2:68322310-68322329 None:intergenic 30.0%
! CAATTCTGGTTATTCATCTA+TGG - chr2_2:68322337-68322356 None:intergenic 30.0%
! GACGATCTATTTCAATTTTC+TGG + chr2_2:68322612-68322631 Msa0267000:CDS 30.0%
TCACAAAGAATTCAGAGCAA+GGG + chr2_2:68320401-68320420 Msa0267000:CDS 35.0%
! TTTTAGATTGGGTGTTAGCT+AGG + chr2_2:68320790-68320809 Msa0267000:intron 35.0%
TTTAGATTGGGTGTTAGCTA+GGG + chr2_2:68320791-68320810 Msa0267000:intron 35.0%
TAGCCTAAGTAATGCTCATT+TGG + chr2_2:68320840-68320859 Msa0267000:intron 35.0%
AAGCCAAATGAGCATTACTT+AGG - chr2_2:68320846-68320865 None:intergenic 35.0%
ACCTACATCTTGTAATGTGT+GGG - chr2_2:68320963-68320982 None:intergenic 35.0%
GTTTCGATTATAGTGACTAG+GGG - chr2_2:68321040-68321059 None:intergenic 35.0%
!!! ACCTTACAAACTGGTTTTGT+GGG + chr2_2:68321185-68321204 Msa0267000:intron 35.0%
! CTTCTTTTTACGATATGTCC+AGG - chr2_2:68321387-68321406 None:intergenic 35.0%
! GTTGATTGAGAGCCTATTTT+TGG - chr2_2:68321469-68321488 None:intergenic 35.0%
! TAGGCTCTCAATCAACATTT+TGG + chr2_2:68321473-68321492 Msa0267000:intron 35.0%
! AGGCTCTCAATCAACATTTT+GGG + chr2_2:68321474-68321493 Msa0267000:intron 35.0%
GTTCTCTCCTATCAAAACTA+AGG + chr2_2:68321654-68321673 Msa0267000:intron 35.0%
!!! GCATGTACCTTAGTTTTGAT+AGG - chr2_2:68321664-68321683 None:intergenic 35.0%
GATGGATCAAACGTTACATT+AGG - chr2_2:68321727-68321746 None:intergenic 35.0%
AAATATGATACTTGCAAGGG+AGG - chr2_2:68321797-68321816 None:intergenic 35.0%
TTGTTGGAAATCAAAGTAGG+GGG - chr2_2:68321949-68321968 None:intergenic 35.0%
CTCAACTGAGTCTGTAAATA+AGG - chr2_2:68322100-68322119 None:intergenic 35.0%
CTTATTTACAGACTCAGTTG+AGG + chr2_2:68322098-68322117 Msa0267000:intron 35.0%
! TATGACGTTTTGCACTATTG+AGG + chr2_2:68322148-68322167 Msa0267000:intron 35.0%
TCTGGTTATTCATCTATGGT+TGG - chr2_2:68322333-68322352 None:intergenic 35.0%
!! ACCAGAATTGCTTTTCATTG+TGG + chr2_2:68322347-68322366 Msa0267000:intron 35.0%
ACCACAATGAAAAGCAATTC+TGG - chr2_2:68322351-68322370 None:intergenic 35.0%
TCATAGAAAATCGTGAGGTA+AGG - chr2_2:68322423-68322442 None:intergenic 35.0%
ATGACAACAATGACAATGCT+AGG - chr2_2:68322504-68322523 None:intergenic 35.0%
GTCATTGTTGTCATTGTTTC+AGG + chr2_2:68322510-68322529 Msa0267000:intron 35.0%
AAAATCCAGCTTTCGAGATA+TGG - chr2_2:68322592-68322611 None:intergenic 35.0%
!! TCAATTTTCTGGTGTTTGCA+AGG + chr2_2:68322623-68322642 Msa0267000:CDS 35.0%
TTGAACAAGTAGTGGTGATT+GGG - chr2_2:68322694-68322713 None:intergenic 35.0%
TTTGAACAAGTAGTGGTGAT+TGG - chr2_2:68322695-68322714 None:intergenic 35.0%
GAAGTTGTTTGAACAAGTAG+TGG - chr2_2:68322702-68322721 None:intergenic 35.0%
TCACAAAGAATTCAGAGCAA+GGG + chr2_2:68320401-68320420 Msa0267000:CDS 35.0%
! TTTTAGATTGGGTGTTAGCT+AGG + chr2_2:68320790-68320809 Msa0267000:intron 35.0%
TTTAGATTGGGTGTTAGCTA+GGG + chr2_2:68320791-68320810 Msa0267000:intron 35.0%
TAGCCTAAGTAATGCTCATT+TGG + chr2_2:68320840-68320859 Msa0267000:intron 35.0%
AAGCCAAATGAGCATTACTT+AGG - chr2_2:68320846-68320865 None:intergenic 35.0%
ACCTACATCTTGTAATGTGT+GGG - chr2_2:68320963-68320982 None:intergenic 35.0%
GTTTCGATTATAGTGACTAG+GGG - chr2_2:68321040-68321059 None:intergenic 35.0%
!!! ACCTTACAAACTGGTTTTGT+GGG + chr2_2:68321185-68321204 Msa0267000:intron 35.0%
! CTTCTTTTTACGATATGTCC+AGG - chr2_2:68321387-68321406 None:intergenic 35.0%
! GTTGATTGAGAGCCTATTTT+TGG - chr2_2:68321469-68321488 None:intergenic 35.0%
! TAGGCTCTCAATCAACATTT+TGG + chr2_2:68321473-68321492 Msa0267000:intron 35.0%
! AGGCTCTCAATCAACATTTT+GGG + chr2_2:68321474-68321493 Msa0267000:intron 35.0%
GTTCTCTCCTATCAAAACTA+AGG + chr2_2:68321654-68321673 Msa0267000:intron 35.0%
!!! GCATGTACCTTAGTTTTGAT+AGG - chr2_2:68321664-68321683 None:intergenic 35.0%
GATGGATCAAACGTTACATT+AGG - chr2_2:68321727-68321746 None:intergenic 35.0%
AAATATGATACTTGCAAGGG+AGG - chr2_2:68321797-68321816 None:intergenic 35.0%
TTGTTGGAAATCAAAGTAGG+GGG - chr2_2:68321949-68321968 None:intergenic 35.0%
CTCAACTGAGTCTGTAAATA+AGG - chr2_2:68322100-68322119 None:intergenic 35.0%
CTTATTTACAGACTCAGTTG+AGG + chr2_2:68322098-68322117 Msa0267000:intron 35.0%
! TATGACGTTTTGCACTATTG+AGG + chr2_2:68322148-68322167 Msa0267000:intron 35.0%
TCTGGTTATTCATCTATGGT+TGG - chr2_2:68322333-68322352 None:intergenic 35.0%
!! ACCAGAATTGCTTTTCATTG+TGG + chr2_2:68322347-68322366 Msa0267000:intron 35.0%
ACCACAATGAAAAGCAATTC+TGG - chr2_2:68322351-68322370 None:intergenic 35.0%
TCATAGAAAATCGTGAGGTA+AGG - chr2_2:68322423-68322442 None:intergenic 35.0%
ATGACAACAATGACAATGCT+AGG - chr2_2:68322504-68322523 None:intergenic 35.0%
GTCATTGTTGTCATTGTTTC+AGG + chr2_2:68322510-68322529 Msa0267000:intron 35.0%
AAAATCCAGCTTTCGAGATA+TGG - chr2_2:68322592-68322611 None:intergenic 35.0%
!! TCAATTTTCTGGTGTTTGCA+AGG + chr2_2:68322623-68322642 Msa0267000:CDS 35.0%
TTGAACAAGTAGTGGTGATT+GGG - chr2_2:68322694-68322713 None:intergenic 35.0%
TTTGAACAAGTAGTGGTGAT+TGG - chr2_2:68322695-68322714 None:intergenic 35.0%
GAAGTTGTTTGAACAAGTAG+TGG - chr2_2:68322702-68322721 None:intergenic 35.0%
CTCACAAAGAATTCAGAGCA+AGG + chr2_2:68320400-68320419 Msa0267000:CDS 40.0%
! GTGATGGAGATGATTCTAAG+AGG + chr2_2:68320425-68320444 Msa0267000:CDS 40.0%
TCCTCAATCATCGTCAAGTA+CGG + chr2_2:68320456-68320475 Msa0267000:CDS 40.0%
TTAGATTGGGTGTTAGCTAG+GGG + chr2_2:68320792-68320811 Msa0267000:intron 40.0%
TCCTGATCGCATATCTAAGA+TGG + chr2_2:68320903-68320922 Msa0267000:intron 40.0%
ACCATCTTAGATATGCGATC+AGG - chr2_2:68320907-68320926 None:intergenic 40.0%
ACCCACACATTACAAGATGT+AGG + chr2_2:68320959-68320978 Msa0267000:intron 40.0%
CACCTACATCTTGTAATGTG+TGG - chr2_2:68320964-68320983 None:intergenic 40.0%
GATTATAGTGACTAGGGGAA+GGG - chr2_2:68321035-68321054 None:intergenic 40.0%
ATCTCATTGCACCCAGAATA+AGG - chr2_2:68321100-68321119 None:intergenic 40.0%
GCATTTCTCACCTTACAAAC+TGG + chr2_2:68321176-68321195 Msa0267000:intron 40.0%
!!! CACCTTACAAACTGGTTTTG+TGG + chr2_2:68321184-68321203 Msa0267000:intron 40.0%
!!! CCTTACAAACTGGTTTTGTG+GGG + chr2_2:68321186-68321205 Msa0267000:intron 40.0%
AACTGAAGGCAAGCATAACA+TGG - chr2_2:68321278-68321297 None:intergenic 40.0%
AGTCTATGAAGCTCACTATG+AGG + chr2_2:68321405-68321424 Msa0267000:intron 40.0%
! GTGGCATATTTGTCGTCTTT+TGG - chr2_2:68321544-68321563 None:intergenic 40.0%
CAAATATGCCACACCAAAAC+AGG + chr2_2:68321552-68321571 Msa0267000:intron 40.0%
! ACTTTTCATGCCGAAATCTG+GGG - chr2_2:68321686-68321705 None:intergenic 40.0%
! CACTTTTCATGCCGAAATCT+GGG - chr2_2:68321687-68321706 None:intergenic 40.0%
! ACACTTTTCATGCCGAAATC+TGG - chr2_2:68321688-68321707 None:intergenic 40.0%
! GGAGAGATGTAATGATGATG+AGG - chr2_2:68321773-68321792 None:intergenic 40.0%
ACCAATATAGATAGTCCCCA+TGG + chr2_2:68321852-68321871 Msa0267000:intron 40.0%
CCAATATAGATAGTCCCCAT+GGG + chr2_2:68321853-68321872 Msa0267000:intron 40.0%
! GTTTGGTTGTTTCGTTGTGT+GGG + chr2_2:68322049-68322068 Msa0267000:intron 40.0%
!! TGTTGACTTCAGCGAACTTT+CGG + chr2_2:68322551-68322570 Msa0267000:CDS 40.0%
TGATACCATATCTCGAAAGC+TGG + chr2_2:68322584-68322603 Msa0267000:CDS 40.0%
CTCACAAAGAATTCAGAGCA+AGG + chr2_2:68320400-68320419 Msa0267000:CDS 40.0%
! GTGATGGAGATGATTCTAAG+AGG + chr2_2:68320425-68320444 Msa0267000:CDS 40.0%
TCCTCAATCATCGTCAAGTA+CGG + chr2_2:68320456-68320475 Msa0267000:CDS 40.0%
TTAGATTGGGTGTTAGCTAG+GGG + chr2_2:68320792-68320811 Msa0267000:intron 40.0%
TCCTGATCGCATATCTAAGA+TGG + chr2_2:68320903-68320922 Msa0267000:intron 40.0%
ACCATCTTAGATATGCGATC+AGG - chr2_2:68320907-68320926 None:intergenic 40.0%
ACCCACACATTACAAGATGT+AGG + chr2_2:68320959-68320978 Msa0267000:intron 40.0%
CACCTACATCTTGTAATGTG+TGG - chr2_2:68320964-68320983 None:intergenic 40.0%
GATTATAGTGACTAGGGGAA+GGG - chr2_2:68321035-68321054 None:intergenic 40.0%
ATCTCATTGCACCCAGAATA+AGG - chr2_2:68321100-68321119 None:intergenic 40.0%
GCATTTCTCACCTTACAAAC+TGG + chr2_2:68321176-68321195 Msa0267000:intron 40.0%
!!! CACCTTACAAACTGGTTTTG+TGG + chr2_2:68321184-68321203 Msa0267000:intron 40.0%
!!! CCTTACAAACTGGTTTTGTG+GGG + chr2_2:68321186-68321205 Msa0267000:intron 40.0%
AACTGAAGGCAAGCATAACA+TGG - chr2_2:68321278-68321297 None:intergenic 40.0%
AGTCTATGAAGCTCACTATG+AGG + chr2_2:68321405-68321424 Msa0267000:intron 40.0%
! GTGGCATATTTGTCGTCTTT+TGG - chr2_2:68321544-68321563 None:intergenic 40.0%
CAAATATGCCACACCAAAAC+AGG + chr2_2:68321552-68321571 Msa0267000:intron 40.0%
! ACTTTTCATGCCGAAATCTG+GGG - chr2_2:68321686-68321705 None:intergenic 40.0%
! CACTTTTCATGCCGAAATCT+GGG - chr2_2:68321687-68321706 None:intergenic 40.0%
! ACACTTTTCATGCCGAAATC+TGG - chr2_2:68321688-68321707 None:intergenic 40.0%
! GGAGAGATGTAATGATGATG+AGG - chr2_2:68321773-68321792 None:intergenic 40.0%
ACCAATATAGATAGTCCCCA+TGG + chr2_2:68321852-68321871 Msa0267000:intron 40.0%
CCAATATAGATAGTCCCCAT+GGG + chr2_2:68321853-68321872 Msa0267000:intron 40.0%
! GTTTGGTTGTTTCGTTGTGT+GGG + chr2_2:68322049-68322068 Msa0267000:intron 40.0%
!! TGTTGACTTCAGCGAACTTT+CGG + chr2_2:68322551-68322570 Msa0267000:CDS 40.0%
TGATACCATATCTCGAAAGC+TGG + chr2_2:68322584-68322603 Msa0267000:CDS 40.0%
AATTCAGAGCAAGGGAGTGA+TGG + chr2_2:68320409-68320428 Msa0267000:CDS 45.0%
ACCGTACTTGACGATGATTG+AGG - chr2_2:68320460-68320479 None:intergenic 45.0%
GCAGTTGAACCATGACTGAT+AGG + chr2_2:68320676-68320695 Msa0267000:intron 45.0%
CGATTATAGTGACTAGGGGA+AGG - chr2_2:68321036-68321055 None:intergenic 45.0%
ACTACTTGGAGCTTCCTTCA+TGG + chr2_2:68321058-68321077 Msa0267000:intron 45.0%
TCCAACGCCTTCCTTATTCT+GGG + chr2_2:68321086-68321105 Msa0267000:intron 45.0%
CATTGCACCCAGAATAAGGA+AGG - chr2_2:68321096-68321115 None:intergenic 45.0%
CCCCACAAAACCAGTTTGTA+AGG - chr2_2:68321189-68321208 None:intergenic 45.0%
!!! ACAAACTGGTTTTGTGGGGT+TGG + chr2_2:68321190-68321209 Msa0267000:intron 45.0%
!!! CAAACTGGTTTTGTGGGGTT+GGG + chr2_2:68321191-68321210 Msa0267000:intron 45.0%
!! TAGTGGGGTGTTTCCTGTTT+TGG - chr2_2:68321568-68321587 None:intergenic 45.0%
AAGGTACATGCCCCAGATTT+CGG + chr2_2:68321673-68321692 Msa0267000:intron 45.0%
TATGATACTTGCAAGGGAGG+TGG - chr2_2:68321794-68321813 None:intergenic 45.0%
TTAAGCTTCATCCATCCACC+AGG + chr2_2:68321818-68321837 Msa0267000:intron 45.0%
TAAGCTTCATCCATCCACCA+GGG + chr2_2:68321819-68321838 Msa0267000:intron 45.0%
!! TATTGGTTCTAAGAGACCCC+TGG - chr2_2:68321839-68321858 None:intergenic 45.0%
CCCATGGGGACTATCTATAT+TGG - chr2_2:68321856-68321875 None:intergenic 45.0%
! CGTTTGGTTGTTTCGTTGTG+TGG + chr2_2:68322048-68322067 Msa0267000:intron 45.0%
TTCGTTGTGTGGGATTGTGA+TGG + chr2_2:68322059-68322078 Msa0267000:intron 45.0%
! TTTCTGGTGTTTGCAAGGAG+TGG + chr2_2:68322628-68322647 Msa0267000:CDS 45.0%
AATTCAGAGCAAGGGAGTGA+TGG + chr2_2:68320409-68320428 Msa0267000:CDS 45.0%
ACCGTACTTGACGATGATTG+AGG - chr2_2:68320460-68320479 None:intergenic 45.0%
GCAGTTGAACCATGACTGAT+AGG + chr2_2:68320676-68320695 Msa0267000:intron 45.0%
CGATTATAGTGACTAGGGGA+AGG - chr2_2:68321036-68321055 None:intergenic 45.0%
ACTACTTGGAGCTTCCTTCA+TGG + chr2_2:68321058-68321077 Msa0267000:intron 45.0%
TCCAACGCCTTCCTTATTCT+GGG + chr2_2:68321086-68321105 Msa0267000:intron 45.0%
CATTGCACCCAGAATAAGGA+AGG - chr2_2:68321096-68321115 None:intergenic 45.0%
CCCCACAAAACCAGTTTGTA+AGG - chr2_2:68321189-68321208 None:intergenic 45.0%
!!! ACAAACTGGTTTTGTGGGGT+TGG + chr2_2:68321190-68321209 Msa0267000:intron 45.0%
!!! CAAACTGGTTTTGTGGGGTT+GGG + chr2_2:68321191-68321210 Msa0267000:intron 45.0%
!! TAGTGGGGTGTTTCCTGTTT+TGG - chr2_2:68321568-68321587 None:intergenic 45.0%
AAGGTACATGCCCCAGATTT+CGG + chr2_2:68321673-68321692 Msa0267000:intron 45.0%
TATGATACTTGCAAGGGAGG+TGG - chr2_2:68321794-68321813 None:intergenic 45.0%
TTAAGCTTCATCCATCCACC+AGG + chr2_2:68321818-68321837 Msa0267000:intron 45.0%
TAAGCTTCATCCATCCACCA+GGG + chr2_2:68321819-68321838 Msa0267000:intron 45.0%
!! TATTGGTTCTAAGAGACCCC+TGG - chr2_2:68321839-68321858 None:intergenic 45.0%
CCCATGGGGACTATCTATAT+TGG - chr2_2:68321856-68321875 None:intergenic 45.0%
! CGTTTGGTTGTTTCGTTGTG+TGG + chr2_2:68322048-68322067 Msa0267000:intron 45.0%
TTCGTTGTGTGGGATTGTGA+TGG + chr2_2:68322059-68322078 Msa0267000:intron 45.0%
! TTTCTGGTGTTTGCAAGGAG+TGG + chr2_2:68322628-68322647 Msa0267000:CDS 45.0%
!! AAATTTGAAAAAATATAAAT+TGG + chr2_2:68320636-68320655 Msa0267000:intron 5.0%
!! AATTTGAAAAAATATAAATT+GGG + chr2_2:68320637-68320656 Msa0267000:intron 5.0%
!! AAATTTGAAAAAATATAAAT+TGG + chr2_2:68320636-68320655 Msa0267000:intron 5.0%
!! AATTTGAAAAAATATAAATT+GGG + chr2_2:68320637-68320656 Msa0267000:intron 5.0%
GTGCAAAGTCGTGTACGTGA+GGG + chr2_2:68320981-68321000 Msa0267000:intron 50.0%
TGCAAAGTCGTGTACGTGAG+GGG + chr2_2:68320982-68321001 Msa0267000:intron 50.0%
!! CAGAATAAGGAAGGCGTTGG+AGG - chr2_2:68321087-68321106 None:intergenic 50.0%
CTCCAACGCCTTCCTTATTC+TGG + chr2_2:68321085-68321104 Msa0267000:intron 50.0%
! ACCCAGAATAAGGAAGGCGT+TGG - chr2_2:68321090-68321109 None:intergenic 50.0%
ATTCTTAGGCATGCAAGCCC+TGG + chr2_2:68321366-68321385 Msa0267000:intron 50.0%
!!! GGGTGTTTCCTGTTTTGGTG+TGG - chr2_2:68321563-68321582 None:intergenic 50.0%
AAGCTTCATCCATCCACCAG+GGG + chr2_2:68321820-68321839 Msa0267000:intron 50.0%
GTGCAAAGTCGTGTACGTGA+GGG + chr2_2:68320981-68321000 Msa0267000:intron 50.0%
TGCAAAGTCGTGTACGTGAG+GGG + chr2_2:68320982-68321001 Msa0267000:intron 50.0%
!! CAGAATAAGGAAGGCGTTGG+AGG - chr2_2:68321087-68321106 None:intergenic 50.0%
CTCCAACGCCTTCCTTATTC+TGG + chr2_2:68321085-68321104 Msa0267000:intron 50.0%
! ACCCAGAATAAGGAAGGCGT+TGG - chr2_2:68321090-68321109 None:intergenic 50.0%
ATTCTTAGGCATGCAAGCCC+TGG + chr2_2:68321366-68321385 Msa0267000:intron 50.0%
!!! GGGTGTTTCCTGTTTTGGTG+TGG - chr2_2:68321563-68321582 None:intergenic 50.0%
AAGCTTCATCCATCCACCAG+GGG + chr2_2:68321820-68321839 Msa0267000:intron 50.0%
GGTGCAAAGTCGTGTACGTG+AGG + chr2_2:68320980-68320999 Msa0267000:intron 55.0%
! CTAGGGGAAGGGCGCAATTA+AGG - chr2_2:68321024-68321043 None:intergenic 55.0%
! GGCGTTGGAGGTTTCCATGA+AGG - chr2_2:68321075-68321094 None:intergenic 55.0%
TCTAAGAGACCCCTGGTGGA+TGG - chr2_2:68321832-68321851 None:intergenic 55.0%
!! TGGTTCTAAGAGACCCCTGG+TGG - chr2_2:68321836-68321855 None:intergenic 55.0%
CTGGTGTTTGCAAGGAGTGG+AGG + chr2_2:68322631-68322650 Msa0267000:CDS 55.0%
!! GCGCGGTAAGCTCGTTTTTC+AGG - chr2_2:68322759-68322778 None:intergenic 55.0%
GGTGCAAAGTCGTGTACGTG+AGG + chr2_2:68320980-68320999 Msa0267000:intron 55.0%
! CTAGGGGAAGGGCGCAATTA+AGG - chr2_2:68321024-68321043 None:intergenic 55.0%
! GGCGTTGGAGGTTTCCATGA+AGG - chr2_2:68321075-68321094 None:intergenic 55.0%
TCTAAGAGACCCCTGGTGGA+TGG - chr2_2:68321832-68321851 None:intergenic 55.0%
!! TGGTTCTAAGAGACCCCTGG+TGG - chr2_2:68321836-68321855 None:intergenic 55.0%
CTGGTGTTTGCAAGGAGTGG+AGG + chr2_2:68322631-68322650 Msa0267000:CDS 55.0%
!! GCGCGGTAAGCTCGTTTTTC+AGG - chr2_2:68322759-68322778 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 68320382 68322786 68320382 ID=Msa0267000;Name=Msa0267000
chr2_2 mRNA 68320382 68322786 68320382 ID=Msa0267000-mRNA-1;Parent=Msa0267000;Name=Msa0267000-mRNA-1;_AED=0.59;_eAED=1.00;_QI=0|0|0|0.5|0|0|2|0|116
chr2_2 exon 68320382 68320477 68320382 ID=Msa0267000-mRNA-1:exon:21676;Parent=Msa0267000-mRNA-1
chr2_2 exon 68322532 68322786 68322532 ID=Msa0267000-mRNA-1:exon:21677;Parent=Msa0267000-mRNA-1
chr2_2 CDS 68320382 68320477 68320382 ID=Msa0267000-mRNA-1:cds;Parent=Msa0267000-mRNA-1
chr2_2 CDS 68322532 68322786 68322532 ID=Msa0267000-mRNA-1:cds;Parent=Msa0267000-mRNA-1
Gene Sequence

>Msa0267000

ATGCAAGTTGACAAGATGCTCACAAAGAATTCAGAGCAAGGGAGTGATGGAGATGATTCTAAGAGGTCTATTGTTCCTCAATCATCGTCAAGTACGGTAAAGAAGCGAAAAGTGTTGTTGACTTCAGCGAACTTTCGGATAATGTACTTGATACCATATCTCGAAAGCTGGATTTTGACGATCTATTTCAATTTTCTGGTGTTTGCAAGGAGTGGAGGAGAGTTCAAAAAATTTATTGGAGAAGTTTCATGGTATCCCAATCACCACTACTTGTTCAAACAACTTCATATGCAAAGAAATTTTGTTCTTTTTATAGCATACCTGAAAAACGAGCTTACCGCGCTAAGATGA

Protein sequence

>Msa0267000

MQVDKMLTKNSEQGSDGDDSKRSIVPQSSSSTVKKRKVLLTSANFRIMYLIPYLESWILTIYFNFLVFARSGGEFKKFIGEVSWYPNHHYLFKQLHMQRNFVLFIAYLKNELTALR*