AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1153840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1153840 MtrunA17_Chr7g0244611 98.851 87 1 0 7 93 142 228 2.94e-58 178
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1153840 AT3G51610.1 73.256 86 22 1 7 91 143 228 4.18e-39 130

Find 130 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTCAGTTGAATGTTTC+TGG 0.130255 7_4:+40960509 Msa1153840:exon
TTGACTCCTATTGTTTGTTT+TGG 0.154117 7_4:-40958240 None:intergenic
GCAGGTTCGCGTCTTCCTTT+AGG 0.164973 7_4:-40960350 None:intergenic
CTCACGATTCACTGCGAAAA+TGG 0.211364 7_4:-40958586 None:intergenic
CAGGTTCGCGTCTTCCTTTA+GGG 0.244698 7_4:-40960349 None:intergenic
CTGAGATCGGTAAACACTTC+TGG 0.254455 7_4:+40960930 Msa1153840:CDS
ATCAATTTCATTACGAGATT+GGG 0.257084 7_4:-40962697 None:intergenic
TGGGCTGGTTGATTGGATTA+AGG 0.259615 7_4:-40958220 None:intergenic
GCAATCTTCACGTGACAAAT+TGG 0.264557 7_4:+40962484 Msa1153840:CDS
TTTCTTCTGTTCCTTTGTTT+TGG 0.264563 7_4:+40960068 Msa1153840:five_prime_UTR
GGTATTAGTGGGAGGATATA+AGG 0.304161 7_4:+40959972 Msa1153840:five_prime_UTR
GTTCTTTATATACTACTTAC+TGG 0.309864 7_4:+40959816 Msa1153840:five_prime_UTR
TATCAATTTCATTACGAGAT+TGG 0.323363 7_4:-40962698 None:intergenic
ATAAACATAACTATTTAAAA+AGG 0.323689 7_4:+40960301 Msa1153840:five_prime_UTR
CTTCTCCTGTGGTTACTATC+TGG 0.332847 7_4:+40963016 Msa1153840:three_prime_UTR
TGGTGTCACTGCAAAGGTTT+TGG 0.335773 7_4:+40959735 Msa1153840:five_prime_UTR
AGGAGTAGAAAAGGCCTGTT+TGG 0.345496 7_4:+40959950 Msa1153840:five_prime_UTR
AATGTCGTGCAGAAATATTC+AGG 0.354664 7_4:+40959700 Msa1153840:intron
TGAATATATTACAATTCATA+TGG 0.372172 7_4:+40962843 Msa1153840:three_prime_UTR
TGATAAGATCAGTTCGTGTT+GGG 0.372555 7_4:+40962716 Msa1153840:three_prime_UTR
CTTGAATTGCCAGATTTGTA+AGG 0.388407 7_4:+40962614 Msa1153840:intron
ACCAGTTCTATATCAATCAT+TGG 0.394218 7_4:-40959551 None:intergenic
ATAGAAGGCCTTTGAATAGA+AGG 0.398409 7_4:+40960039 Msa1153840:five_prime_UTR
CGCTGACCTATGTTTATAGA+AGG 0.398931 7_4:+40959900 Msa1153840:five_prime_UTR
CTGAAGAACAGTAGCAGAAC+AGG 0.400311 7_4:+40960208 Msa1153840:five_prime_UTR
TAGCGTTTGCTTGTGACTGA+TGG 0.406892 7_4:+40959875 Msa1153840:five_prime_UTR
CTTGCAGAAGAAAGAGAAAC+AGG 0.409710 7_4:+40960170 Msa1153840:five_prime_UTR
TGAGATCGGTAAACACTTCT+GGG 0.414035 7_4:+40960931 Msa1153840:CDS
CGTGGCTTCTAGTGGTAAAT+CGG 0.426511 7_4:+40959513 Msa1153840:five_prime_UTR
TAGTGGGAGGATATAAGGTA+TGG 0.434913 7_4:+40959977 Msa1153840:five_prime_UTR
CTTGTGAAGAAGAATTAAAT+AGG 0.438789 7_4:+40960237 Msa1153840:five_prime_UTR
GATATAAGGTATGGGCTAAG+AGG 0.442118 7_4:+40959986 Msa1153840:five_prime_UTR
CCAGTGTAACCCGTTGGCTT+CGG 0.448440 7_4:-40958742 None:intergenic
ATCTCTCTCGCTTACAAACC+CGG 0.450686 7_4:+40958397 Msa1153840:five_prime_UTR
TCACGATTCACTGCGAAAAT+GGG 0.450816 7_4:-40958585 None:intergenic
ATTCCGATACCGAAGCCAAC+GGG 0.455378 7_4:+40958733 Msa1153840:five_prime_UTR
TAACCCGTTGGCTTCGGTAT+CGG 0.456354 7_4:-40958736 None:intergenic
ACTCATGGGGACGATGTCGC+CGG 0.457155 7_4:-40958416 None:intergenic
AGGACTAGAGGAAGAATAGA+AGG 0.462326 7_4:+40960024 Msa1153840:five_prime_UTR
TCCAATGATTGATATAGAAC+TGG 0.462410 7_4:+40959550 Msa1153840:five_prime_UTR
TCCGAGATAGATGTAACTTC+AGG 0.464090 7_4:+40961833 Msa1153840:CDS
TAACACCAACCATGTGTATC+GGG 0.466807 7_4:-40960984 None:intergenic
CCTCCCACTAATACCCAAAC+AGG 0.473339 7_4:-40959964 None:intergenic
AAGGCCTGTTTGGGTATTAG+TGG 0.475121 7_4:+40959960 Msa1153840:five_prime_UTR
TGCCAGATTTGTAAGGGAAA+CGG 0.477376 7_4:+40962621 Msa1153840:intron
TGGTGAGAGAAGCGGTTTCA+CGG 0.482954 7_4:-40958335 None:intergenic
CAGAAGTGTTTACCGATCTC+AGG 0.485516 7_4:-40960929 None:intergenic
TTGATTTGCAGTGAAGACTT+AGG 0.488504 7_4:-40963043 None:intergenic
ACGGTGGTTGTAGCCATGGC+TGG 0.493030 7_4:-40958316 None:intergenic
CTCTTACAAACAAATACTCA+TGG 0.493321 7_4:+40958191 Msa1153840:five_prime_UTR
ACCAGCCCAAAACAAACAAT+AGG 0.494617 7_4:+40958234 Msa1153840:five_prime_UTR
AGCGTTTGCTTGTGACTGAT+GGG 0.497229 7_4:+40959876 Msa1153840:five_prime_UTR
TTGATAAGATCAGTTCGTGT+TGG 0.501135 7_4:+40962715 Msa1153840:three_prime_UTR
GATGGACCTAGGAGTAGAAA+AGG 0.506025 7_4:+40959941 Msa1153840:five_prime_UTR
ACCGCAATCACGCGTGATTG+TGG 0.506241 7_4:-40960467 None:intergenic
TCCTGAAGTTACATCTATCT+CGG 0.506559 7_4:-40961834 None:intergenic
TTTGACGCAATTCATGGCCA+TGG 0.508885 7_4:+40960376 Msa1153840:five_prime_UTR
GTATTGACCCATGCGACTCA+TGG 0.511754 7_4:-40958431 None:intergenic
GCAGATCATTTCAAGTTGGA+AGG 0.514097 7_4:+40959474 Msa1153840:intron
TATCGGGCAAGTATATGCTT+TGG 0.516390 7_4:-40960968 None:intergenic
TGCGGTACATTTGACAACAT+TGG 0.516988 7_4:+40960484 Msa1153840:five_prime_UTR
TATTGACCCATGCGACTCAT+GGG 0.517016 7_4:-40958430 None:intergenic
TCCTGTGGTTACTATCTGGT+CGG 0.519006 7_4:+40963020 Msa1153840:three_prime_UTR
TCAAATAGCGGCTTCACTGT+TGG 0.522891 7_4:+40960147 Msa1153840:five_prime_UTR
GGAGTAGAAAAGGCCTGTTT+GGG 0.523309 7_4:+40959951 Msa1153840:five_prime_UTR
CTCATGGGGACGATGTCGCC+GGG 0.526796 7_4:-40958415 None:intergenic
TTTCACGGTGGTTGTAGCCA+TGG 0.527353 7_4:-40958320 None:intergenic
ATATAAGGTATGGGCTAAGA+GGG 0.531785 7_4:+40959987 Msa1153840:five_prime_UTR
TCCTCTCCTTCTATAAACAT+AGG 0.532961 7_4:-40959906 None:intergenic
CATCGTCCCCATGAGTCGCA+TGG 0.534909 7_4:+40958423 Msa1153840:five_prime_UTR
ACTTCTGGGATGCTCAGCAT+TGG 0.538595 7_4:+40960945 Msa1153840:CDS
TTGAATTGCCAGATTTGTAA+GGG 0.539256 7_4:+40962615 Msa1153840:intron
CAGATCATTTCAAGTTGGAA+GGG 0.541179 7_4:+40959475 Msa1153840:intron
CCGAAGCCAACGGGTTACAC+TGG 0.542548 7_4:+40958742 Msa1153840:five_prime_UTR
ACTTCTTGAACGCAGTTCTC+CGG 0.543610 7_4:+40960404 Msa1153840:five_prime_UTR
TCTGCTTGGTGTCACTGCAA+AGG 0.545127 7_4:+40959729 Msa1153840:five_prime_UTR
ATAACACCAACCATGTGTAT+CGG 0.547538 7_4:-40960985 None:intergenic
CAAAGGAACAGAAGAAAACA+AGG 0.548572 7_4:-40960062 None:intergenic
CTAAGAGGGAAAAGGGACAT+TGG 0.551555 7_4:+40960001 Msa1153840:five_prime_UTR
CAAGAAAAGAAATGACTGGT+TGG 0.553193 7_4:-40962764 None:intergenic
CGTTCAAGAAGTGCAGGCCA+TGG 0.554610 7_4:-40960393 None:intergenic
TCAACTGCAACGCGTCCGGC+CGG 0.560372 7_4:-40960423 None:intergenic
GAACTGCGTTCAAGAAGTGC+AGG 0.561033 7_4:-40960399 None:intergenic
TCAATTTCATTACGAGATTG+GGG 0.561595 7_4:-40962696 None:intergenic
TATTCAGGAACTGATCTGCT+TGG 0.568359 7_4:+40959715 Msa1153840:five_prime_UTR
ATGAATTGCGTCAAAATCGC+AGG 0.571351 7_4:-40960368 None:intergenic
ACCTATGTTTATAGAAGGAG+AGG 0.571646 7_4:+40959905 Msa1153840:five_prime_UTR
AGGCCTGTTTGGGTATTAGT+GGG 0.572980 7_4:+40959961 Msa1153840:five_prime_UTR
AGAGGGAAAAGGGACATTGG+AGG 0.575511 7_4:+40960004 Msa1153840:five_prime_UTR
TCCACAATCACGCGTGATTG+CGG 0.577714 7_4:+40960466 Msa1153840:five_prime_UTR
TCTTACAAACAAATACTCAT+GGG 0.578038 7_4:+40958192 Msa1153840:five_prime_UTR
GTTGAAATTCATCCTGAGAT+CGG 0.579436 7_4:+40960917 Msa1153840:CDS
TTATATCCCGTGGCTTCTAG+TGG 0.580150 7_4:+40959505 Msa1153840:five_prime_UTR
AAACAAGGCCTTCTATTCAA+AGG 0.580220 7_4:-40960047 None:intergenic
ACCGTGTGGCAGGATCTGAT+TGG 0.581826 7_4:+40958552 Msa1153840:five_prime_UTR
CGATTTACCACTAGAAGCCA+CGG 0.582583 7_4:-40959512 None:intergenic
CCATCAAGAAAAGAAATGAC+TGG 0.584636 7_4:-40962768 None:intergenic
GTATGGGCTAAGAGGGAAAA+GGG 0.586187 7_4:+40959994 Msa1153840:five_prime_UTR
GATAAGATCAGTTCGTGTTG+GGG 0.587224 7_4:+40962717 Msa1153840:three_prime_UTR
ATCGTCCCCATGAGTCGCAT+GGG 0.592295 7_4:+40958424 Msa1153840:five_prime_UTR
GATTCCGATACCGAAGCCAA+CGG 0.593004 7_4:+40958732 Msa1153840:five_prime_UTR
CTTGAACGCAGTTCTCCGGC+CGG 0.596644 7_4:+40960408 Msa1153840:five_prime_UTR
ATATGCAGATCATTTCAAGT+TGG 0.597916 7_4:+40959470 Msa1153840:intron
AGTGGGAGGATATAAGGTAT+GGG 0.598292 7_4:+40959978 Msa1153840:five_prime_UTR
AATAGTAGAAGTAGTAGCGA+CGG 0.598723 7_4:-40958358 None:intergenic
TCGTAGCTAATTACCAGCCA+TGG 0.599930 7_4:+40958303 Msa1153840:five_prime_UTR
GGTATGGGCTAAGAGGGAAA+AGG 0.601489 7_4:+40959993 Msa1153840:five_prime_UTR
AAGGGACATTGGAGGACTAG+AGG 0.611282 7_4:+40960012 Msa1153840:five_prime_UTR
GGTGAAAGCAGCATCCCTGT+TGG 0.615648 7_4:+40962646 Msa1153840:CDS
TCTATACACAACCAAAACAA+AGG 0.626053 7_4:-40960079 None:intergenic
TCTTGATGGAGGTGAGCGCG+AGG 0.629773 7_4:+40962782 Msa1153840:three_prime_UTR
CCTGTTTGGGTATTAGTGGG+AGG 0.636302 7_4:+40959964 Msa1153840:five_prime_UTR
GATTTACCACTAGAAGCCAC+GGG 0.639710 7_4:-40959511 None:intergenic
AAGAACAACGTACAGTGATG+TGG 0.639794 7_4:-40959763 None:intergenic
ATTGCAATGTGTAGATTGAG+AGG 0.640221 7_4:-40962466 None:intergenic
CTTCACGTGACAAATTGGAA+AGG 0.642563 7_4:+40962489 Msa1153840:CDS
ACCAATCAGATCCTGCCACA+CGG 0.644746 7_4:-40958553 None:intergenic
TCAGCTCCAGTGTAACCCGT+TGG 0.646453 7_4:-40958748 None:intergenic
ATTGTGGAGTCGCAGCGTGA+CGG 0.646737 7_4:-40960451 None:intergenic
TCACTGCGAAAATGGGACAA+TGG 0.649773 7_4:-40958578 None:intergenic
AGATTTGTAAGGGAAACGGT+TGG 0.649799 7_4:+40962625 Msa1153840:intron
AGTAGAAGTAGTAGCGACGG+TGG 0.669039 7_4:-40958355 None:intergenic
ATTGACCCATGCGACTCATG+GGG 0.671678 7_4:-40958429 None:intergenic
ATATACTTGCCCGATACACA+TGG 0.671957 7_4:+40960975 Msa1153840:CDS
CTTCTATAAACATAGGTCAG+CGG 0.672829 7_4:-40959899 None:intergenic
CAAACAATAGGAGTCAACTT+CGG 0.675107 7_4:+40958246 Msa1153840:five_prime_UTR
AGCGACGGTGGTGAGAGAAG+CGG 0.676244 7_4:-40958343 None:intergenic
GGTAAATCGGAAAAGTACAG+AGG 0.704795 7_4:+40959526 Msa1153840:five_prime_UTR
ATTTGCAGTCGAGAACCGTG+TGG 0.731479 7_4:+40958538 Msa1153840:intron
TGAGAGAAGCGGTTTCACGG+TGG 0.743247 7_4:-40958332 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTTATGTTTATTTTTTAA+GGG - chr7_4:40960294-40960313 None:intergenic 10.0%
!!! ATAGTTATGTTTATTTTTTA+AGG - chr7_4:40960295-40960314 None:intergenic 10.0%
!! ATAAACATAACTATTTAAAA+AGG + chr7_4:40960301-40960320 Msa1153840:five_prime_UTR 10.0%
!! AATTGATATATTTATAAAGA+TGG + chr7_4:40961903-40961922 Msa1153840:intron 10.0%
!! ATTGATATATTTATAAAGAT+GGG + chr7_4:40961904-40961923 Msa1153840:intron 10.0%
!!! TTTTGGAAAAAAATAAATTA+TGG - chr7_4:40962572-40962591 None:intergenic 10.0%
!!! ATTTGTAATTGATTTTGTAT+TGG + chr7_4:40958690-40958709 Msa1153840:intron 15.0%
!! TTGTACTATTTATACAATAT+GGG + chr7_4:40959348-40959367 Msa1153840:intron 15.0%
!! TCATAATATAGTACAATAAT+TGG - chr7_4:40959624-40959643 None:intergenic 15.0%
!!! TTTTTTATTTAATGTTCCTA+AGG + chr7_4:40960666-40960685 Msa1153840:intron 15.0%
!! ATAAATTTCATATAAACCTT+AGG - chr7_4:40960685-40960704 None:intergenic 15.0%
!!! TTAAATGAAAACAATTTTAG+AGG - chr7_4:40960735-40960754 None:intergenic 15.0%
!! ATACATTTAAGAGAAATATT+AGG + chr7_4:40960814-40960833 Msa1153840:intron 15.0%
!!! TTTTTAATGATTTTCCTTTT+AGG - chr7_4:40961373-40961392 None:intergenic 15.0%
!!! ACCTTTTTTTATAATGAATT+TGG + chr7_4:40961477-40961496 Msa1153840:intron 15.0%
!! TCCAAATTCATTATAAAAAA+AGG - chr7_4:40961481-40961500 None:intergenic 15.0%
!! TATAATGAATTTGGAAATTA+AGG + chr7_4:40961486-40961505 Msa1153840:intron 15.0%
!! ATAATGAATTTGGAAATTAA+GGG + chr7_4:40961487-40961506 Msa1153840:intron 15.0%
!! TTGATATATTTATAAAGATG+GGG + chr7_4:40961905-40961924 Msa1153840:intron 15.0%
!! CAATATTATAAATAAATAGC+AGG - chr7_4:40962409-40962428 None:intergenic 15.0%
!! TTATTTATAATATTGTCCAA+TGG + chr7_4:40962414-40962433 Msa1153840:intron 15.0%
!! AAATAAATTATGGTTGTAAA+TGG - chr7_4:40962562-40962581 None:intergenic 15.0%
!! TGAATATATTACAATTCATA+TGG + chr7_4:40962843-40962862 Msa1153840:three_prime_UTR 15.0%
!!! AATTGATTTTGTATTGGAAT+TGG + chr7_4:40958696-40958715 Msa1153840:intron 20.0%
!!! CAAATTTCTCACATTTTATA+AGG - chr7_4:40958775-40958794 None:intergenic 20.0%
!! TAAATTATAATCACATGTGT+CGG + chr7_4:40958940-40958959 Msa1153840:intron 20.0%
!!! GAAAAAATGTTATTTGATTC+AGG + chr7_4:40959033-40959052 Msa1153840:intron 20.0%
!! TATTCCATTCTAATTATAGT+TGG - chr7_4:40959095-40959114 None:intergenic 20.0%
!! GTTGTACTATTTATACAATA+TGG + chr7_4:40959347-40959366 Msa1153840:intron 20.0%
!! TGTACTATTTATACAATATG+GGG + chr7_4:40959349-40959368 Msa1153840:intron 20.0%
!!! ATCGTTGTTTTCTTATTTTT+TGG + chr7_4:40959378-40959397 Msa1153840:intron 20.0%
!!! TCGTTGTTTTCTTATTTTTT+GGG + chr7_4:40959379-40959398 Msa1153840:intron 20.0%
!!! ATTTTGTTAATCTCAAATAG+CGG + chr7_4:40960135-40960154 Msa1153840:five_prime_UTR 20.0%
!!! TTTATTTTTTAAGGGTGTAT+TGG - chr7_4:40960286-40960305 None:intergenic 20.0%
!! TCTTAAATGTATATGACTAA+AGG - chr7_4:40960806-40960825 None:intergenic 20.0%
!!! TTATTCTAAAACATTTGTGT+TGG + chr7_4:40960884-40960903 Msa1153840:intron 20.0%
!! AATTTAGGAGTGAAATTATT+AGG + chr7_4:40961235-40961254 Msa1153840:intron 20.0%
!! ATTTAGGAGTGAAATTATTA+GGG + chr7_4:40961236-40961255 Msa1153840:intron 20.0%
!! TAATGAATTTGGAAATTAAG+GGG + chr7_4:40961488-40961507 Msa1153840:intron 20.0%
!!! TCTTTTTTGTTCTTTAGTTT+TGG + chr7_4:40961548-40961567 Msa1153840:intron 20.0%
!! CATATAATTCAAAGTTCAAA+TGG - chr7_4:40961717-40961736 None:intergenic 20.0%
!! CATTGAATAAATTATGTATG+TGG - chr7_4:40962056-40962075 None:intergenic 20.0%
!!! TTTCAAGTAATTTCATTCAT+CGG - chr7_4:40962307-40962326 None:intergenic 20.0%
!! ATTCAAGATGAAGAAATTAT+GGG - chr7_4:40962601-40962620 None:intergenic 20.0%
!! AATTCAAGATGAAGAAATTA+TGG - chr7_4:40962602-40962621 None:intergenic 20.0%
!!! GTTTTGATTTGTTTTTGTAT+AGG - chr7_4:40962910-40962929 None:intergenic 20.0%
! TCTTACAAACAAATACTCAT+GGG + chr7_4:40958192-40958211 Msa1153840:five_prime_UTR 25.0%
! GAAAGAAAAAAGAGATGAAA+CGG - chr7_4:40958517-40958536 None:intergenic 25.0%
!!! TCTTCTAGTTTTGTCAAATT+AGG + chr7_4:40958622-40958641 Msa1153840:intron 25.0%
!!! CTTCTAGTTTTGTCAAATTA+GGG + chr7_4:40958623-40958642 Msa1153840:intron 25.0%
! CAGCACAACAAAATAAAATT+AGG - chr7_4:40958657-40958676 None:intergenic 25.0%
!! ATTCAATGTTTGAATTTGCT+TGG + chr7_4:40958800-40958819 Msa1153840:intron 25.0%
!! AGTTATTTGCTAGTAAGAAA+TGG + chr7_4:40959219-40959238 Msa1153840:intron 25.0%
! AACCAATGAAATGAAATTTC+TGG + chr7_4:40959322-40959341 Msa1153840:intron 25.0%
! GTACTATTTATACAATATGG+GGG + chr7_4:40959350-40959369 Msa1153840:intron 25.0%
!! TTCTTCTCTAGTTTAAGAAA+GGG - chr7_4:40959416-40959435 None:intergenic 25.0%
!! TTTCTTCTCTAGTTTAAGAA+AGG - chr7_4:40959417-40959436 None:intergenic 25.0%
!! GGTAATTATGTGTTTAAGAT+AGG + chr7_4:40959571-40959590 Msa1153840:intron 25.0%
!!! ACATTAGGAAATGGATTAAT+TGG + chr7_4:40959671-40959690 Msa1153840:intron 25.0%
! GTTCTTTATATACTACTTAC+TGG + chr7_4:40959816-40959835 Msa1153840:five_prime_UTR 25.0%
! AGAGGAATAAAACAAAAAGA+TGG + chr7_4:40959923-40959942 Msa1153840:five_prime_UTR 25.0%
! CTTGTGAAGAAGAATTAAAT+AGG + chr7_4:40960237-40960256 Msa1153840:five_prime_UTR 25.0%
! ATTATTCAGTTGAATGTTTC+TGG + chr7_4:40960509-40960528 Msa1153840:exon 25.0%
!!! AAAACAATTTTAGAGGAAAC+TGG - chr7_4:40960728-40960747 None:intergenic 25.0%
! TTGGAATTTATCAAAGTGTA+AGG - chr7_4:40960779-40960798 None:intergenic 25.0%
!! GTATATGACTAAAGGTATAT+TGG - chr7_4:40960798-40960817 None:intergenic 25.0%
! AAATAAATAAACCAGAGAGA+AGG - chr7_4:40961024-40961043 None:intergenic 25.0%
! GTTGAAAAGACTTATCATTA+AGG + chr7_4:40961291-40961310 Msa1153840:intron 25.0%
! AAAAGACTTATCATTAAGGA+AGG + chr7_4:40961295-40961314 Msa1153840:intron 25.0%
!!! GATTTTCCTTTTAGGTTTTT+TGG - chr7_4:40961365-40961384 None:intergenic 25.0%
!!! TTTGCATTTTGATGTATTTC+AGG + chr7_4:40961801-40961820 Msa1153840:intron 25.0%
!! TCAGGATTTTATGTTCTATT+TGG + chr7_4:40961851-40961870 Msa1153840:CDS 25.0%
!!! TTTTATGTTCTATTTGGTTC+AGG + chr7_4:40961857-40961876 Msa1153840:CDS 25.0%
! TGTTTATAATTGACACTAGA+GGG - chr7_4:40962002-40962021 None:intergenic 25.0%
! TTGTTTATAATTGACACTAG+AGG - chr7_4:40962003-40962022 None:intergenic 25.0%
!! AATTTGCTTATAATTGAGAC+CGG + chr7_4:40962091-40962110 Msa1153840:intron 25.0%
!! TATGGTGAGTGATATTTTAT+TGG - chr7_4:40962136-40962155 None:intergenic 25.0%
! GATTTGACTAATACGATTTA+AGG + chr7_4:40962272-40962291 Msa1153840:intron 25.0%
! AAACATTCTATTTCAAAGCA+AGG + chr7_4:40962324-40962343 Msa1153840:intron 25.0%
!!! GAAATTATGGGTTTGTTTTT+TGG - chr7_4:40962589-40962608 None:intergenic 25.0%
! ATCAATTTCATTACGAGATT+GGG - chr7_4:40962700-40962719 None:intergenic 25.0%
! TATCAATTTCATTACGAGAT+TGG - chr7_4:40962701-40962720 None:intergenic 25.0%
CTCTTACAAACAAATACTCA+TGG + chr7_4:40958191-40958210 Msa1153840:five_prime_UTR 30.0%
!! TGACTCCTATTGTTTGTTTT+GGG - chr7_4:40958242-40958261 None:intergenic 30.0%
! TTGACTCCTATTGTTTGTTT+TGG - chr7_4:40958243-40958262 None:intergenic 30.0%
GATGCAAAAGTTGAATGTTT+AGG + chr7_4:40959061-40959080 Msa1153840:intron 30.0%
CGTTCCAACTATAATTAGAA+TGG + chr7_4:40959088-40959107 Msa1153840:intron 30.0%
GAAAATGTGTCAATTCAGAA+TGG + chr7_4:40959137-40959156 Msa1153840:intron 30.0%
AAATGTGTGTCAAATCAGAA+TGG + chr7_4:40959170-40959189 Msa1153840:intron 30.0%
!!! GATTTTTTTGTAGTGTGCAT+TGG + chr7_4:40959243-40959262 Msa1153840:intron 30.0%
AAAAATGGAATGGTTGTAGT+AGG + chr7_4:40959282-40959301 Msa1153840:intron 30.0%
TGGTTGTAGTAGGAAATTAT+AGG + chr7_4:40959292-40959311 Msa1153840:intron 30.0%
TGCCAGAAATTTCATTTCAT+TGG - chr7_4:40959327-40959346 None:intergenic 30.0%
! TCTTCTCTAGTTTAAGAAAG+GGG - chr7_4:40959415-40959434 None:intergenic 30.0%
! ATATGCAGATCATTTCAAGT+TGG + chr7_4:40959470-40959489 Msa1153840:intron 30.0%
TCCAATGATTGATATAGAAC+TGG + chr7_4:40959550-40959569 Msa1153840:five_prime_UTR 30.0%
ACCAGTTCTATATCAATCAT+TGG - chr7_4:40959554-40959573 None:intergenic 30.0%
GAAACAATGAAACAGACATT+AGG + chr7_4:40959656-40959675 Msa1153840:intron 30.0%
ATGAAACAGACATTAGGAAA+TGG + chr7_4:40959662-40959681 Msa1153840:intron 30.0%
TAAAACAAAAAGATGGACCT+AGG + chr7_4:40959930-40959949 Msa1153840:five_prime_UTR 30.0%
!! TTTCTTCTGTTCCTTTGTTT+TGG + chr7_4:40960068-40960087 Msa1153840:five_prime_UTR 30.0%
TCTATACACAACCAAAACAA+AGG - chr7_4:40960082-40960101 None:intergenic 30.0%
!!! TTTGTTTTGGTTGTGTATAG+AGG + chr7_4:40960081-40960100 Msa1153840:five_prime_UTR 30.0%
ACATTTCCAACACATAACAT+TGG - chr7_4:40960607-40960626 None:intergenic 30.0%
AGCATTATAAACCCACTAAA+TGG - chr7_4:40961077-40961096 None:intergenic 30.0%
!! TTTAGTGGGTTTATAATGCT+AGG + chr7_4:40961077-40961096 Msa1153840:intron 30.0%
CAAGATAGGATTAGGAATTT+AGG + chr7_4:40961220-40961239 Msa1153840:intron 30.0%
AAGAATGGAGAATGCTATTA+GGG - chr7_4:40961621-40961640 None:intergenic 30.0%
TAAGAATGGAGAATGCTATT+AGG - chr7_4:40961622-40961641 None:intergenic 30.0%
GCATTCTCCATTCTTAAAAT+TGG + chr7_4:40961626-40961645 Msa1153840:intron 30.0%
!! GATCACTCCAATTTTAAGAA+TGG - chr7_4:40961636-40961655 None:intergenic 30.0%
! ATCACACTCTCAAATGTTTT+GGG + chr7_4:40961653-40961672 Msa1153840:intron 30.0%
!! CATTTTGATGTATTTCAGGA+AGG + chr7_4:40961805-40961824 Msa1153840:intron 30.0%
TGTGAGTATTTCACTCATAT+TGG + chr7_4:40961956-40961975 Msa1153840:intron 30.0%
TATATCTGTCATCACCAAAT+TGG - chr7_4:40962224-40962243 None:intergenic 30.0%
! GGTATTTTATTCCTTCTTCA+AGG + chr7_4:40962510-40962529 Msa1153840:intron 30.0%
TTGAATTGCCAGATTTGTAA+GGG + chr7_4:40962615-40962634 Msa1153840:intron 30.0%
TCAATTTCATTACGAGATTG+GGG - chr7_4:40962699-40962718 None:intergenic 30.0%
! ATGATTATTTTCTTCTCCTG+TGG + chr7_4:40963005-40963024 Msa1153840:three_prime_UTR 30.0%
CAAACAATAGGAGTCAACTT+CGG + chr7_4:40958246-40958265 Msa1153840:five_prime_UTR 35.0%
AATAGTAGAAGTAGTAGCGA+CGG - chr7_4:40958361-40958380 None:intergenic 35.0%
TGTATTGGAATTGGATTTGC+AGG + chr7_4:40958705-40958724 Msa1153840:intron 35.0%
CAATTCAGAATGGTTGTAGT+AGG + chr7_4:40959147-40959166 Msa1153840:intron 35.0%
!! CAGATCATTTCAAGTTGGAA+GGG + chr7_4:40959475-40959494 Msa1153840:intron 35.0%
AATGTCGTGCAGAAATATTC+AGG + chr7_4:40959700-40959719 Msa1153840:intron 35.0%
CTTCTATAAACATAGGTCAG+CGG - chr7_4:40959902-40959921 None:intergenic 35.0%
ACCTATGTTTATAGAAGGAG+AGG + chr7_4:40959905-40959924 Msa1153840:five_prime_UTR 35.0%
TCCTCTCCTTCTATAAACAT+AGG - chr7_4:40959909-40959928 None:intergenic 35.0%
! ATATAAGGTATGGGCTAAGA+GGG + chr7_4:40959987-40960006 Msa1153840:five_prime_UTR 35.0%
ATAGAAGGCCTTTGAATAGA+AGG + chr7_4:40960039-40960058 Msa1153840:five_prime_UTR 35.0%
AAACAAGGCCTTCTATTCAA+AGG - chr7_4:40960050-40960069 None:intergenic 35.0%
CAAAGGAACAGAAGAAAACA+AGG - chr7_4:40960065-40960084 None:intergenic 35.0%
!!! AGGCTTTGAAGTCTCTTTTT+CGG + chr7_4:40960101-40960120 Msa1153840:five_prime_UTR 35.0%
ATGTGCTTGTATACTGTTTG+TGG + chr7_4:40960633-40960652 Msa1153840:intron 35.0%
GTTGAAATTCATCCTGAGAT+CGG + chr7_4:40960917-40960936 Msa1153840:CDS 35.0%
ATAACACCAACCATGTGTAT+CGG - chr7_4:40960988-40961007 None:intergenic 35.0%
CTGGAAAAACAAGATTGCAA+AGG - chr7_4:40961114-40961133 None:intergenic 35.0%
TTCCAGTAGTGTTAATCAAC+TGG + chr7_4:40961128-40961147 Msa1153840:intron 35.0%
ATCCAGTTGATTAACACTAC+TGG - chr7_4:40961133-40961152 None:intergenic 35.0%
GTGAATATGCAAGACAAGAT+AGG + chr7_4:40961206-40961225 Msa1153840:intron 35.0%
ATGCAAGACAAGATAGGATT+AGG + chr7_4:40961212-40961231 Msa1153840:intron 35.0%
TAGGAGTGAAATTATTAGGG+TGG + chr7_4:40961239-40961258 Msa1153840:intron 35.0%
TAGAGTCTCCTTAGATGATT+TGG + chr7_4:40961262-40961281 Msa1153840:intron 35.0%
ACGTATGTCCAAATCATCTA+AGG - chr7_4:40961273-40961292 None:intergenic 35.0%
GAGAGACCAAAAAACCTAAA+AGG + chr7_4:40961356-40961375 Msa1153840:intron 35.0%
AAATTAAGGGGTAGTTCTTG+TGG + chr7_4:40961500-40961519 Msa1153840:intron 35.0%
AGGGTCTACGTGTAAATAAA+TGG - chr7_4:40961602-40961621 None:intergenic 35.0%
! GATCACACTCTCAAATGTTT+TGG + chr7_4:40961652-40961671 Msa1153840:intron 35.0%
TCCTGAAGTTACATCTATCT+CGG - chr7_4:40961837-40961856 None:intergenic 35.0%
TCTTCTTTATTAGTACCCTC+CGG - chr7_4:40962113-40962132 None:intergenic 35.0%
TAAAAACAAAGTTGTGCTGC+AGG - chr7_4:40962247-40962266 None:intergenic 35.0%
CATTCTATTTCAAAGCAAGG+CGG + chr7_4:40962327-40962346 Msa1153840:intron 35.0%
ATTGCAATGTGTAGATTGAG+AGG - chr7_4:40962469-40962488 None:intergenic 35.0%
!! GTTTTCAATAGCCTTGAAGA+AGG - chr7_4:40962524-40962543 None:intergenic 35.0%
CTTGAATTGCCAGATTTGTA+AGG + chr7_4:40962614-40962633 Msa1153840:intron 35.0%
TTGATAAGATCAGTTCGTGT+TGG + chr7_4:40962715-40962734 Msa1153840:three_prime_UTR 35.0%
TGATAAGATCAGTTCGTGTT+GGG + chr7_4:40962716-40962735 Msa1153840:three_prime_UTR 35.0%
CAAGAAAAGAAATGACTGGT+TGG - chr7_4:40962767-40962786 None:intergenic 35.0%
CCATCAAGAAAAGAAATGAC+TGG - chr7_4:40962771-40962790 None:intergenic 35.0%
! CCAGTCATTTCTTTTCTTGA+TGG + chr7_4:40962768-40962787 Msa1153840:three_prime_UTR 35.0%
! GTCATTTCTTTTCTTGATGG+AGG + chr7_4:40962771-40962790 Msa1153840:three_prime_UTR 35.0%
!!! TTTGTTTTGGGCTGGTTGAT+TGG - chr7_4:40958230-40958249 None:intergenic 40.0%
ACCAGCCCAAAACAAACAAT+AGG + chr7_4:40958234-40958253 Msa1153840:five_prime_UTR 40.0%
!!! TCCTATTGTTTGTTTTGGGC+TGG - chr7_4:40958238-40958257 None:intergenic 40.0%
!! GGTGTCGTTTGAAAGAGAAA+TGG - chr7_4:40958496-40958515 None:intergenic 40.0%
TCACGATTCACTGCGAAAAT+GGG - chr7_4:40958588-40958607 None:intergenic 40.0%
AATGCACTAGCTATGAAGCA+CGG + chr7_4:40958871-40958890 Msa1153840:intron 40.0%
TATGAAGCACGGACATTGAT+AGG + chr7_4:40958882-40958901 Msa1153840:intron 40.0%
! ATAATCACATGTGTCGGTGT+TGG + chr7_4:40958946-40958965 Msa1153840:intron 40.0%
ATGCCTTCGATCAATAGTGT+CGG + chr7_4:40958978-40958997 Msa1153840:intron 40.0%
!! TCGGTGCTATATAGTGCATT+AGG + chr7_4:40958997-40959016 Msa1153840:intron 40.0%
! ACGTGTCGGTAAAAATGGAA+TGG + chr7_4:40959272-40959291 Msa1153840:intron 40.0%
!! GCAGATCATTTCAAGTTGGA+AGG + chr7_4:40959474-40959493 Msa1153840:intron 40.0%
! GGTAAATCGGAAAAGTACAG+AGG + chr7_4:40959526-40959545 Msa1153840:five_prime_UTR 40.0%
TATTCAGGAACTGATCTGCT+TGG + chr7_4:40959715-40959734 Msa1153840:five_prime_UTR 40.0%
AAGAACAACGTACAGTGATG+TGG - chr7_4:40959766-40959785 None:intergenic 40.0%
!! GGTTTGAGTTTTCTGACATG+TGG + chr7_4:40959837-40959856 Msa1153840:five_prime_UTR 40.0%
CGCTGACCTATGTTTATAGA+AGG + chr7_4:40959900-40959919 Msa1153840:five_prime_UTR 40.0%
GGTATTAGTGGGAGGATATA+AGG + chr7_4:40959972-40959991 Msa1153840:five_prime_UTR 40.0%
TAGTGGGAGGATATAAGGTA+TGG + chr7_4:40959977-40959996 Msa1153840:five_prime_UTR 40.0%
AGTGGGAGGATATAAGGTAT+GGG + chr7_4:40959978-40959997 Msa1153840:five_prime_UTR 40.0%
! GATATAAGGTATGGGCTAAG+AGG + chr7_4:40959986-40960005 Msa1153840:five_prime_UTR 40.0%
AGGACTAGAGGAAGAATAGA+AGG + chr7_4:40960024-40960043 Msa1153840:five_prime_UTR 40.0%
!!! GGCTTTGAAGTCTCTTTTTC+GGG + chr7_4:40960102-40960121 Msa1153840:five_prime_UTR 40.0%
!!! GCTTTGAAGTCTCTTTTTCG+GGG + chr7_4:40960103-40960122 Msa1153840:five_prime_UTR 40.0%
CTTGCAGAAGAAAGAGAAAC+AGG + chr7_4:40960170-40960189 Msa1153840:five_prime_UTR 40.0%
! ATTTTGCATGCGAACCCTAA+AGG + chr7_4:40960335-40960354 Msa1153840:five_prime_UTR 40.0%
ATGAATTGCGTCAAAATCGC+AGG - chr7_4:40960371-40960390 None:intergenic 40.0%
!! TGCGATTTTGACGCAATTCA+TGG + chr7_4:40960370-40960389 Msa1153840:five_prime_UTR 40.0%
TGCGGTACATTTGACAACAT+TGG + chr7_4:40960484-40960503 Msa1153840:five_prime_UTR 40.0%
CTACTGCCAATGTTATGTGT+TGG + chr7_4:40960598-40960617 Msa1153840:intron 40.0%
TGAGATCGGTAAACACTTCT+GGG + chr7_4:40960931-40960950 Msa1153840:CDS 40.0%
TATCGGGCAAGTATATGCTT+TGG - chr7_4:40960971-40960990 None:intergenic 40.0%
ATATACTTGCCCGATACACA+TGG + chr7_4:40960975-40960994 Msa1153840:CDS 40.0%
TAACACCAACCATGTGTATC+GGG - chr7_4:40960987-40961006 None:intergenic 40.0%
GATTTATAGCTCCTTCTCTC+TGG + chr7_4:40961010-40961029 Msa1153840:intron 40.0%
! ATGAAGCATCTGCCATTTAG+TGG + chr7_4:40961062-40961081 Msa1153840:intron 40.0%
! TGAAGCATCTGCCATTTAGT+GGG + chr7_4:40961063-40961082 Msa1153840:intron 40.0%
GTGTTACACTAGTACATGAC+CGG + chr7_4:40961166-40961185 Msa1153840:intron 40.0%
ACATAACCATTGCATCACTC+CGG - chr7_4:40961188-40961207 None:intergenic 40.0%
ACCGTCATTGTTTGAGTAGA+CGG + chr7_4:40961446-40961465 Msa1153840:intron 40.0%
TCCGTCTACTCAAACAATGA+CGG - chr7_4:40961450-40961469 None:intergenic 40.0%
!! TCTCAAATGTTTTGGGTCAG+TGG + chr7_4:40961660-40961679 Msa1153840:intron 40.0%
TCCGAGATAGATGTAACTTC+AGG + chr7_4:40961833-40961852 Msa1153840:CDS 40.0%
TTGCTTATAATTGAGACCGG+AGG + chr7_4:40962094-40962113 Msa1153840:intron 40.0%
TGCTTATAATTGAGACCGGA+GGG + chr7_4:40962095-40962114 Msa1153840:intron 40.0%
ATCACCAAATTGGTGTGTCT+GGG - chr7_4:40962214-40962233 None:intergenic 40.0%
ATTGTCCAATGGATATGCTC+AGG + chr7_4:40962425-40962444 Msa1153840:intron 40.0%
TTGTCCAATGGATATGCTCA+GGG + chr7_4:40962426-40962445 Msa1153840:intron 40.0%
GCAATCTTCACGTGACAAAT+TGG + chr7_4:40962484-40962503 Msa1153840:CDS 40.0%
CTTCACGTGACAAATTGGAA+AGG + chr7_4:40962489-40962508 Msa1153840:CDS 40.0%
TGCCAGATTTGTAAGGGAAA+CGG + chr7_4:40962621-40962640 Msa1153840:intron 40.0%
AACCGTTTCCCTTACAAATC+TGG - chr7_4:40962626-40962645 None:intergenic 40.0%
AGATTTGTAAGGGAAACGGT+TGG + chr7_4:40962625-40962644 Msa1153840:intron 40.0%
!! CTTTTGCTATCTCTCCAACA+GGG - chr7_4:40962663-40962682 None:intergenic 40.0%
!! ACTTTTGCTATCTCTCCAAC+AGG - chr7_4:40962664-40962683 None:intergenic 40.0%
GATAAGATCAGTTCGTGTTG+GGG + chr7_4:40962717-40962736 Msa1153840:three_prime_UTR 40.0%
!! TGGGCTGGTTGATTGGATTA+AGG - chr7_4:40958223-40958242 None:intergenic 45.0%
TCGTAGCTAATTACCAGCCA+TGG + chr7_4:40958303-40958322 Msa1153840:five_prime_UTR 45.0%
ATCTCTCTCGCTTACAAACC+CGG + chr7_4:40958397-40958416 Msa1153840:five_prime_UTR 45.0%
TATTGACCCATGCGACTCAT+GGG - chr7_4:40958433-40958452 None:intergenic 45.0%
TCACTGCGAAAATGGGACAA+TGG - chr7_4:40958581-40958600 None:intergenic 45.0%
CTCACGATTCACTGCGAAAA+TGG - chr7_4:40958589-40958608 None:intergenic 45.0%
! CATTTTCGCAGTGAATCGTG+AGG + chr7_4:40958587-40958606 Msa1153840:five_prime_UTR 45.0%
! CGGACATTGATAGGTTGACA+CGG + chr7_4:40958891-40958910 Msa1153840:intron 45.0%
! GGACATTGATAGGTTGACAC+GGG + chr7_4:40958892-40958911 Msa1153840:intron 45.0%
! GAGAGACGTGTCGGTAAAAA+TGG + chr7_4:40959267-40959286 Msa1153840:intron 45.0%
CTAGTTTAAGAAAGGGGACG+AGG - chr7_4:40959409-40959428 None:intergenic 45.0%
!! GGGAGAAGTTTTATATCCCG+TGG + chr7_4:40959495-40959514 Msa1153840:five_prime_UTR 45.0%
TTATATCCCGTGGCTTCTAG+TGG + chr7_4:40959505-40959524 Msa1153840:five_prime_UTR 45.0%
GATTTACCACTAGAAGCCAC+GGG - chr7_4:40959514-40959533 None:intergenic 45.0%
CGATTTACCACTAGAAGCCA+CGG - chr7_4:40959515-40959534 None:intergenic 45.0%
CGTGGCTTCTAGTGGTAAAT+CGG + chr7_4:40959513-40959532 Msa1153840:five_prime_UTR 45.0%
!!! TGGTGTCACTGCAAAGGTTT+TGG + chr7_4:40959735-40959754 Msa1153840:five_prime_UTR 45.0%
TAGCGTTTGCTTGTGACTGA+TGG + chr7_4:40959875-40959894 Msa1153840:five_prime_UTR 45.0%
AGCGTTTGCTTGTGACTGAT+GGG + chr7_4:40959876-40959895 Msa1153840:five_prime_UTR 45.0%
GATGGACCTAGGAGTAGAAA+AGG + chr7_4:40959941-40959960 Msa1153840:five_prime_UTR 45.0%
! AACAGGCCTTTTCTACTCCT+AGG - chr7_4:40959950-40959969 None:intergenic 45.0%
AGGAGTAGAAAAGGCCTGTT+TGG + chr7_4:40959950-40959969 Msa1153840:five_prime_UTR 45.0%
GGAGTAGAAAAGGCCTGTTT+GGG + chr7_4:40959951-40959970 Msa1153840:five_prime_UTR 45.0%
AAGGCCTGTTTGGGTATTAG+TGG + chr7_4:40959960-40959979 Msa1153840:five_prime_UTR 45.0%
AGGCCTGTTTGGGTATTAGT+GGG + chr7_4:40959961-40959980 Msa1153840:five_prime_UTR 45.0%
! GTATGGGCTAAGAGGGAAAA+GGG + chr7_4:40959994-40960013 Msa1153840:five_prime_UTR 45.0%
CTAAGAGGGAAAAGGGACAT+TGG + chr7_4:40960001-40960020 Msa1153840:five_prime_UTR 45.0%
TCAAATAGCGGCTTCACTGT+TGG + chr7_4:40960147-40960166 Msa1153840:five_prime_UTR 45.0%
CTGAAGAACAGTAGCAGAAC+AGG + chr7_4:40960208-40960227 Msa1153840:five_prime_UTR 45.0%
TTTGACGCAATTCATGGCCA+TGG + chr7_4:40960376-40960395 Msa1153840:five_prime_UTR 45.0%
ACTTCTTGAACGCAGTTCTC+CGG + chr7_4:40960404-40960423 Msa1153840:five_prime_UTR 45.0%
!! CAGAAGTGTTTACCGATCTC+AGG - chr7_4:40960932-40960951 None:intergenic 45.0%
CTGAGATCGGTAAACACTTC+TGG + chr7_4:40960930-40960949 Msa1153840:CDS 45.0%
!! TGTTTTGGGTCAGTGGAAGA+TGG + chr7_4:40961667-40961686 Msa1153840:intron 45.0%
!! TGGGGTATTTTACCAGTCCA+TGG + chr7_4:40961923-40961942 Msa1153840:intron 45.0%
ACTCACAAGTCACTTGTCCA+TGG - chr7_4:40961943-40961962 None:intergenic 45.0%
TCACCAAATTGGTGTGTCTG+GGG - chr7_4:40962213-40962232 None:intergenic 45.0%
CATCACCAAATTGGTGTGTC+TGG - chr7_4:40962215-40962234 None:intergenic 45.0%
CTTCTCCTGTGGTTACTATC+TGG + chr7_4:40963016-40963035 Msa1153840:three_prime_UTR 45.0%
TCCTGTGGTTACTATCTGGT+CGG + chr7_4:40963020-40963039 Msa1153840:three_prime_UTR 45.0%
!! TAATATATTAAATTGAAATA+TGG + chr7_4:40959113-40959132 Msa1153840:intron 5.0%
!! TAAAATTATTTATCTAATTA+TGG - chr7_4:40962154-40962173 None:intergenic 5.0%
TTTCACGGTGGTTGTAGCCA+TGG - chr7_4:40958323-40958342 None:intergenic 50.0%
TGGTGAGAGAAGCGGTTTCA+CGG - chr7_4:40958338-40958357 None:intergenic 50.0%
AGTAGAAGTAGTAGCGACGG+TGG - chr7_4:40958358-40958377 None:intergenic 50.0%
ATTGACCCATGCGACTCATG+GGG - chr7_4:40958432-40958451 None:intergenic 50.0%
! GTATTGACCCATGCGACTCA+TGG - chr7_4:40958434-40958453 None:intergenic 50.0%
GATTGAAGAGACGAACGGAG+TGG - chr7_4:40958456-40958475 None:intergenic 50.0%
TGCGCGATTGAAGAGACGAA+CGG - chr7_4:40958461-40958480 None:intergenic 50.0%
ATTTGCAGTCGAGAACCGTG+TGG + chr7_4:40958538-40958557 Msa1153840:intron 50.0%
ACCAATCAGATCCTGCCACA+CGG - chr7_4:40958556-40958575 None:intergenic 50.0%
GATTCCGATACCGAAGCCAA+CGG + chr7_4:40958732-40958751 Msa1153840:five_prime_UTR 50.0%
ATTCCGATACCGAAGCCAAC+GGG + chr7_4:40958733-40958752 Msa1153840:five_prime_UTR 50.0%
!! TAACCCGTTGGCTTCGGTAT+CGG - chr7_4:40958739-40958758 None:intergenic 50.0%
! GCACCGACACTATTGATCGA+AGG - chr7_4:40958984-40959003 None:intergenic 50.0%
! TGCATTGGTGAGAGACGTGT+CGG + chr7_4:40959258-40959277 Msa1153840:intron 50.0%
!! TCTGCTTGGTGTCACTGCAA+AGG + chr7_4:40959729-40959748 Msa1153840:five_prime_UTR 50.0%
CCTCCCACTAATACCCAAAC+AGG - chr7_4:40959967-40959986 None:intergenic 50.0%
CCTGTTTGGGTATTAGTGGG+AGG + chr7_4:40959964-40959983 Msa1153840:five_prime_UTR 50.0%
! GGTATGGGCTAAGAGGGAAA+AGG + chr7_4:40959993-40960012 Msa1153840:five_prime_UTR 50.0%
AGAGGGAAAAGGGACATTGG+AGG + chr7_4:40960004-40960023 Msa1153840:five_prime_UTR 50.0%
AAGGGACATTGGAGGACTAG+AGG + chr7_4:40960012-40960031 Msa1153840:five_prime_UTR 50.0%
CAGGTTCGCGTCTTCCTTTA+GGG - chr7_4:40960352-40960371 None:intergenic 50.0%
! GAACTGCGTTCAAGAAGTGC+AGG - chr7_4:40960402-40960421 None:intergenic 50.0%
TCCACAATCACGCGTGATTG+CGG + chr7_4:40960466-40960485 Msa1153840:five_prime_UTR 50.0%
!! ACTTCTGGGATGCTCAGCAT+TGG + chr7_4:40960945-40960964 Msa1153840:CDS 50.0%
ACTTGCCCGATACACATGGT+TGG + chr7_4:40960979-40960998 Msa1153840:intron 50.0%
ACATGACCGGAGTGATGCAA+TGG + chr7_4:40961179-40961198 Msa1153840:intron 50.0%
CAAGTCACTTGTCCATGGAC+TGG - chr7_4:40961938-40961957 None:intergenic 50.0%
AGAGCCCTGAGCATATCCAT+TGG - chr7_4:40962433-40962452 None:intergenic 50.0%
TGAGAGAAGCGGTTTCACGG+TGG - chr7_4:40958335-40958354 None:intergenic 55.0%
ATCGTCCCCATGAGTCGCAT+GGG + chr7_4:40958424-40958443 Msa1153840:five_prime_UTR 55.0%
ACCGTGTGGCAGGATCTGAT+TGG + chr7_4:40958552-40958571 Msa1153840:five_prime_UTR 55.0%
!! CCAGTGTAACCCGTTGGCTT+CGG - chr7_4:40958745-40958764 None:intergenic 55.0%
TCAGCTCCAGTGTAACCCGT+TGG - chr7_4:40958751-40958770 None:intergenic 55.0%
GCAGGTTCGCGTCTTCCTTT+AGG - chr7_4:40960353-40960372 None:intergenic 55.0%
! CGTTCAAGAAGTGCAGGCCA+TGG - chr7_4:40960396-40960415 None:intergenic 55.0%
ATTGTGGAGTCGCAGCGTGA+CGG - chr7_4:40960454-40960473 None:intergenic 55.0%
ACCGCAATCACGCGTGATTG+TGG - chr7_4:40960470-40960489 None:intergenic 55.0%
CTGCCCCAGACACACCAATT+TGG + chr7_4:40962207-40962226 Msa1153840:intron 55.0%
GGTGAAAGCAGCATCCCTGT+TGG + chr7_4:40962646-40962665 Msa1153840:CDS 55.0%
GCCGACCAGATAGTAACCAC+AGG - chr7_4:40963024-40963043 None:intergenic 55.0%
ACGGTGGTTGTAGCCATGGC+TGG - chr7_4:40958319-40958338 None:intergenic 60.0%
AGCGACGGTGGTGAGAGAAG+CGG - chr7_4:40958346-40958365 None:intergenic 60.0%
ACTCATGGGGACGATGTCGC+CGG - chr7_4:40958419-40958438 None:intergenic 60.0%
CATCGTCCCCATGAGTCGCA+TGG + chr7_4:40958423-40958442 Msa1153840:five_prime_UTR 60.0%
!! CCGAAGCCAACGGGTTACAC+TGG + chr7_4:40958742-40958761 Msa1153840:five_prime_UTR 60.0%
CTTGAACGCAGTTCTCCGGC+CGG + chr7_4:40960408-40960427 Msa1153840:five_prime_UTR 60.0%
GAGGTCAACTGCAACGCGTC+CGG - chr7_4:40960430-40960449 None:intergenic 60.0%
TCTTGATGGAGGTGAGCGCG+AGG + chr7_4:40962782-40962801 Msa1153840:three_prime_UTR 60.0%
CTCATGGGGACGATGTCGCC+GGG - chr7_4:40958418-40958437 None:intergenic 65.0%
GCAGTCGAGAACCGTGTGGC+AGG + chr7_4:40958542-40958561 Msa1153840:intron 65.0%
TCAACTGCAACGCGTCCGGC+CGG - chr7_4:40960426-40960445 None:intergenic 65.0%
! TGGTGTGTCTGGGGCAGACG+TGG - chr7_4:40962204-40962223 None:intergenic 65.0%
GGAGTCGCAGCGTGACGGTG+AGG - chr7_4:40960449-40960468 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 40958176 40963056 40958176 ID=Msa1153840;Name=Msa1153840
chr7_4 mRNA 40958176 40963056 40958176 ID=Msa1153840-mRNA-1;Parent=Msa1153840;Name=Msa1153840-mRNA-1;_AED=0.10;_eAED=0.10;_QI=1307|0.77|0.9|1|0.77|0.8|10|366|93
chr7_4 exon 40958176 40958459 40958176 ID=Msa1153840-mRNA-1:exon:9909;Parent=Msa1153840-mRNA-1
chr7_4 exon 40958546 40958608 40958546 ID=Msa1153840-mRNA-1:exon:9910;Parent=Msa1153840-mRNA-1
chr7_4 exon 40958727 40958782 40958727 ID=Msa1153840-mRNA-1:exon:9911;Parent=Msa1153840-mRNA-1
chr7_4 exon 40959478 40959571 40959478 ID=Msa1153840-mRNA-1:exon:9912;Parent=Msa1153840-mRNA-1
chr7_4 exon 40959712 40960530 40959712 ID=Msa1153840-mRNA-1:exon:9913;Parent=Msa1153840-mRNA-1
chr7_4 exon 40960869 40960875 40960869 ID=Msa1153840-mRNA-1:exon:9914;Parent=Msa1153840-mRNA-1
chr7_4 exon 40960915 40960996 40960915 ID=Msa1153840-mRNA-1:exon:9915;Parent=Msa1153840-mRNA-1
chr7_4 exon 40961823 40961878 40961823 ID=Msa1153840-mRNA-1:exon:9916;Parent=Msa1153840-mRNA-1
chr7_4 exon 40962447 40962510 40962447 ID=Msa1153840-mRNA-1:exon:9917;Parent=Msa1153840-mRNA-1
chr7_4 exon 40962627 40963056 40962627 ID=Msa1153840-mRNA-1:exon:9918;Parent=Msa1153840-mRNA-1
chr7_4 five_prime_UTR 40958176 40958459 40958176 ID=Msa1153840-mRNA-1:five_prime_utr;Parent=Msa1153840-mRNA-1
chr7_4 five_prime_UTR 40958546 40958608 40958546 ID=Msa1153840-mRNA-1:five_prime_utr;Parent=Msa1153840-mRNA-1
chr7_4 five_prime_UTR 40958727 40958782 40958727 ID=Msa1153840-mRNA-1:five_prime_utr;Parent=Msa1153840-mRNA-1
chr7_4 five_prime_UTR 40959478 40959571 40959478 ID=Msa1153840-mRNA-1:five_prime_utr;Parent=Msa1153840-mRNA-1
chr7_4 five_prime_UTR 40959712 40960521 40959712 ID=Msa1153840-mRNA-1:five_prime_utr;Parent=Msa1153840-mRNA-1
chr7_4 CDS 40960522 40960530 40960522 ID=Msa1153840-mRNA-1:cds;Parent=Msa1153840-mRNA-1
chr7_4 CDS 40960869 40960875 40960869 ID=Msa1153840-mRNA-1:cds;Parent=Msa1153840-mRNA-1
chr7_4 CDS 40960915 40960996 40960915 ID=Msa1153840-mRNA-1:cds;Parent=Msa1153840-mRNA-1
chr7_4 CDS 40961823 40961878 40961823 ID=Msa1153840-mRNA-1:cds;Parent=Msa1153840-mRNA-1
chr7_4 CDS 40962447 40962510 40962447 ID=Msa1153840-mRNA-1:cds;Parent=Msa1153840-mRNA-1
chr7_4 CDS 40962627 40962690 40962627 ID=Msa1153840-mRNA-1:cds;Parent=Msa1153840-mRNA-1
chr7_4 three_prime_UTR 40962691 40963056 40962691 ID=Msa1153840-mRNA-1:three_prime_utr;Parent=Msa1153840-mRNA-1
Gene Sequence

>Msa1153840

ATGTTTCTGATTTTTAATGTTGAAATTCATCCTGAGATCGGTAAACACTTCTGGGATGCTCAGCATTGGCCAAAGCATATACTTGCCCGATACACATGGAAGGAACATTCCGAGATAGATGTAACTTCAGGATTTTATGTTCTATTTGGTTCAGGGCTCTTGCTGTCTTTCATCCTCTCAATCTACACATTGCAATCTTCACGTGACAAATTGGAAAGATTTGTAAGGGAAACGGTTGGTGAAAGCAGCATCCCTGTTGGAGAGATAGCAAAAGTTGAATGA
Protein sequence

>Msa1153840

MFLIFNVEIHPEIGKHFWDAQHWPKHILARYTWKEHSEIDVTSGFYVLFGSGLLLSFILSIYTLQSSRDKLERFVRETVGESSIPVGEIAKVE*