Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523270 | XP_013462258.1 | 98.370 | 184 | 3 | 0 | 1 | 184 | 167 | 350 | 1.52e-129 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523270 | sp|Q6NPN9|DWA2_ARATH | 67.935 | 184 | 59 | 0 | 1 | 184 | 167 | 350 | 4.39e-92 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523270 | A0A072V4M1 | 98.370 | 184 | 3 | 0 | 1 | 184 | 167 | 350 | 7.25e-130 | 377 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa0523270 | 0.807161 | 5.786325e-50 | -8.615850e-47 |
| Msa0014990 | Msa0523270 | 0.800201 | 1.610429e-48 | -8.615850e-47 |
| Msa0017510 | Msa0523270 | 0.829727 | 4.378785e-55 | -8.615850e-47 |
| Msa0032430 | Msa0523270 | 0.802964 | 4.369637e-49 | -8.615850e-47 |
| Msa0075220 | Msa0523270 | 0.805416 | 1.348852e-49 | -8.615850e-47 |
| Msa0089630 | Msa0523270 | 0.802519 | 5.399678e-49 | -8.615850e-47 |
| Msa0094120 | Msa0523270 | 0.842908 | 1.939889e-58 | -8.615850e-47 |
| Msa0110970 | Msa0523270 | 0.814311 | 1.643722e-51 | -8.615850e-47 |
| Msa0114060 | Msa0523270 | 0.803060 | 4.175026e-49 | -8.615850e-47 |
| Msa0157290 | Msa0523270 | 0.829251 | 5.715381e-55 | -8.615850e-47 |
| Msa0159930 | Msa0523270 | 0.801555 | 8.518562e-49 | -8.615850e-47 |
| Msa0172450 | Msa0523270 | 0.810103 | 1.361602e-50 | -8.615850e-47 |
| Msa0223080 | Msa0523270 | 0.803869 | 2.837494e-49 | -8.615850e-47 |
| Msa0225740 | Msa0523270 | 0.848525 | 5.797662e-60 | -8.615850e-47 |
| Msa0385580 | Msa0523270 | 0.805631 | 1.215812e-49 | -8.615850e-47 |
| Msa0385810 | Msa0523270 | 0.860591 | 1.856475e-63 | -8.615850e-47 |
| Msa0403950 | Msa0523270 | 0.804722 | 1.884571e-49 | -8.615850e-47 |
| Msa0403970 | Msa0523270 | 0.813503 | 2.476844e-51 | -8.615850e-47 |
| Msa0404260 | Msa0523270 | 0.855515 | 5.989499e-62 | -8.615850e-47 |
| Msa0410650 | Msa0523270 | 0.801916 | 7.183991e-49 | -8.615850e-47 |
| Msa0417880 | Msa0523270 | 0.820552 | 6.459464e-53 | -8.615850e-47 |
| Msa0433640 | Msa0523270 | 0.800089 | 1.696936e-48 | -8.615850e-47 |
| Msa0436050 | Msa0523270 | 0.808310 | 3.298574e-50 | -8.615850e-47 |
| Msa0439200 | Msa0523270 | 0.800703 | 1.272864e-48 | -8.615850e-47 |
| Msa0464380 | Msa0523270 | 0.804075 | 2.570380e-49 | -8.615850e-47 |
| Msa0479170 | Msa0523270 | 0.818866 | 1.567026e-52 | -8.615850e-47 |
| Msa0481530 | Msa0523270 | 0.814912 | 1.210003e-51 | -8.615850e-47 |
| Msa0243100 | Msa0523270 | 0.818481 | 1.916953e-52 | -8.615850e-47 |
| Msa0255090 | Msa0523270 | 0.801279 | 9.703101e-49 | -8.615850e-47 |
| Msa0273900 | Msa0523270 | 0.802235 | 6.176116e-49 | -8.615850e-47 |
| Msa0288680 | Msa0523270 | 0.819859 | 9.309448e-53 | -8.615850e-47 |
| Msa0302160 | Msa0523270 | 0.805415 | 1.349922e-49 | -8.615850e-47 |
| Msa0309770 | Msa0523270 | 0.801834 | 7.467580e-49 | -8.615850e-47 |
| Msa0337540 | Msa0523270 | 0.804861 | 1.762938e-49 | -8.615850e-47 |
| Msa0339250 | Msa0523270 | 0.800314 | 1.527500e-48 | -8.615850e-47 |
| Msa0339490 | Msa0523270 | 0.802957 | 4.384085e-49 | -8.615850e-47 |
| Msa0342310 | Msa0523270 | 0.803822 | 2.901772e-49 | -8.615850e-47 |
| Msa0347770 | Msa0523270 | 0.805052 | 1.607727e-49 | -8.615850e-47 |
| Msa0483860 | Msa0523270 | 0.803291 | 3.739848e-49 | -8.615850e-47 |
| Msa0501460 | Msa0523270 | 0.801441 | 8.990380e-49 | -8.615850e-47 |
| Msa0507680 | Msa0523270 | 0.808317 | 3.287376e-50 | -8.615850e-47 |
| Msa0521500 | Msa0523270 | 0.807765 | 4.308776e-50 | -8.615850e-47 |
| Msa0523270 | Msa0523320 | 0.905334 | 4.791499e-80 | -8.615850e-47 |
| Msa0523270 | Msa0529890 | 0.802185 | 6.325320e-49 | -8.615850e-47 |
| Msa0523270 | Msa0566310 | 0.800626 | 1.319682e-48 | -8.615850e-47 |
| Msa0523270 | Msa0569200 | 0.807176 | 5.745364e-50 | -8.615850e-47 |
| Msa0523270 | Msa0571140 | 0.803906 | 2.786994e-49 | -8.615850e-47 |
| Msa0523270 | Msa0585560 | 0.806604 | 7.587264e-50 | -8.615850e-47 |
| Msa0523270 | Msa0607050 | 0.816455 | 5.482684e-52 | -8.615850e-47 |
| Msa0523270 | Msa0625720 | 0.804925 | 1.708959e-49 | -8.615850e-47 |
| Msa0523270 | Msa0650020 | 0.808674 | 2.758034e-50 | -8.615850e-47 |
| Msa0523270 | Msa0657970 | 0.802275 | 6.062237e-49 | -8.615850e-47 |
| Msa0523270 | Msa0662500 | 0.812817 | 3.503430e-51 | -8.615850e-47 |
| Msa0523270 | Msa0663390 | 0.817999 | 2.463588e-52 | -8.615850e-47 |
| Msa0523270 | Msa0690150 | 0.815666 | 8.226191e-52 | -8.615850e-47 |
| Msa0523270 | Msa0690750 | 0.808870 | 2.504025e-50 | -8.615850e-47 |
| Msa0523270 | Msa0709400 | 0.839528 | 1.501079e-57 | -8.615850e-47 |
| Msa0523270 | Msa0730430 | 0.806635 | 7.476719e-50 | -8.615850e-47 |
| Msa0523270 | Msa0741840 | 0.817888 | 2.610551e-52 | -8.615850e-47 |
| Msa0523270 | Msa0808270 | 0.803378 | 3.587574e-49 | -8.615850e-47 |
| Msa0523270 | Msa0818310 | 0.803721 | 3.044640e-49 | -8.615850e-47 |
| Msa0523270 | Msa0822870 | 0.801955 | 7.053756e-49 | -8.615850e-47 |
| Msa0523270 | Msa0858770 | 0.808488 | 3.022116e-50 | -8.615850e-47 |
| Msa0523270 | Msa0871270 | 0.808474 | 3.042842e-50 | -8.615850e-47 |
| Msa0523270 | Msa0880140 | 0.826858 | 2.153530e-54 | -8.615850e-47 |
| Msa0523270 | Msa0884410 | -0.804323 | 2.282881e-49 | -8.615850e-47 |
| Msa0523270 | Msa0902760 | 0.832482 | 9.219130e-56 | -8.615850e-47 |
| Msa0523270 | Msa0944190 | 0.800046 | 1.731802e-48 | -8.615850e-47 |
| Msa0523270 | Msa0966400 | 0.806930 | 6.476067e-50 | -8.615850e-47 |
| Msa0523270 | Msa0968590 | 0.803669 | 3.121648e-49 | -8.615850e-47 |
| Msa0523270 | Msa0979730 | 0.838819 | 2.292119e-57 | -8.615850e-47 |
| Msa0523270 | Msa1012790 | 0.801954 | 7.056718e-49 | -8.615850e-47 |
| Msa0523270 | Msa1013400 | 0.841335 | 5.058971e-58 | -8.615850e-47 |
| Msa0523270 | Msa1040400 | 0.812378 | 4.369783e-51 | -8.615850e-47 |
| Msa0523270 | Msa1066490 | 0.811469 | 6.893335e-51 | -8.615850e-47 |
| Msa0523270 | Msa1078170 | 0.823316 | 1.478954e-53 | -8.615850e-47 |
| Msa0523270 | Msa1081980 | 0.817648 | 2.957291e-52 | -8.615850e-47 |
| Msa0523270 | Msa1085200 | 0.801384 | 9.236700e-49 | -8.615850e-47 |
| Msa0523270 | Msa1085800 | 0.801855 | 7.394681e-49 | -8.615850e-47 |
| Msa0523270 | Msa1093530 | 0.831833 | 1.333841e-55 | -8.615850e-47 |
| Msa0523270 | Msa1093840 | 0.801403 | 9.152049e-49 | -8.615850e-47 |
| Msa0523270 | Msa1124110 | 0.808731 | 2.681863e-50 | -8.615850e-47 |
| Msa0523270 | Msa1124960 | 0.840064 | 1.089022e-57 | -8.615850e-47 |
| Msa0523270 | Msa1127890 | 0.817262 | 3.611777e-52 | -8.615850e-47 |
| Msa0523270 | Msa1128710 | 0.802683 | 4.993586e-49 | -8.615850e-47 |
| Msa0523270 | Msa1134110 | 0.800058 | 1.721828e-48 | -8.615850e-47 |
| Msa0523270 | Msa1142020 | 0.818405 | 1.994119e-52 | -8.615850e-47 |
| Msa0523270 | Msa1153840 | 0.806538 | 7.837406e-50 | -8.615850e-47 |
| Msa0523270 | Msa1207270 | 0.802476 | 5.508589e-49 | -8.615850e-47 |
| Msa0523270 | Msa1209460 | 0.826320 | 2.894238e-54 | -8.615850e-47 |
| Msa0523270 | Msa1218600 | 0.835540 | 1.581480e-56 | -8.615850e-47 |
| Msa0523270 | Msa1254700 | 0.811533 | 6.674534e-51 | -8.615850e-47 |
| Msa0523270 | Msa1267430 | 0.810951 | 8.929581e-51 | -8.615850e-47 |
| Msa0523270 | Msa1364730 | 0.800598 | 1.336707e-48 | -8.615850e-47 |
| Msa0523270 | Msa1374120 | 0.809513 | 1.823249e-50 | -8.615850e-47 |
| Msa0523270 | Msa1375170 | 0.802701 | 4.950837e-49 | -8.615850e-47 |
| Msa0523270 | Msa1382620 | 0.802739 | 4.862735e-49 | -8.615850e-47 |
| Msa0523270 | Msa1391770 | 0.801284 | 9.683186e-49 | -8.615850e-47 |
| Msa0523270 | Msa1398340 | 0.806482 | 8.053709e-50 | -8.615850e-47 |
| Msa0523270 | Msa1436570 | 0.802138 | 6.467160e-49 | -8.615850e-47 |
| Msa0523270 | Msa1446820 | 0.805865 | 1.085928e-49 | -8.615850e-47 |
| Msa0523270 | Msa1451160 | 0.823941 | 1.056068e-53 | -8.615850e-47 |
| Msa0523270 | Msa1464810 | 0.829756 | 4.308653e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523270 | MtrunA17_Chr3g0143791 | 98.370 | 184 | 3 | 0 | 1 | 184 | 167 | 350 | 1.40e-133 | 377 |
| Msa0523270 | MtrunA17_Chr4g0036951 | 28.049 | 164 | 111 | 4 | 9 | 169 | 218 | 377 | 1.23e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523270 | AT1G20540.1 | 70.652 | 184 | 53 | 1 | 1 | 183 | 167 | 350 | 2.78e-97 | 286 |
| Msa0523270 | AT1G76260.1 | 67.935 | 184 | 59 | 0 | 1 | 184 | 167 | 350 | 4.47e-93 | 275 |
| Msa0523270 | AT2G16780.1 | 24.026 | 154 | 111 | 3 | 19 | 169 | 235 | 385 | 5.82e-11 | 60.8 |
Find 128 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAATCATCTCTCCAGTTT+TGG | 0.158181 | 3_4:+76570818 | Msa0523270:CDS |
| GTGATTTCTATCATATTATT+TGG | 0.172174 | 3_4:+76572956 | Msa0523270:three_prime_UTR |
| GATTATGAAGACAGTATTTA+TGG | 0.189984 | 3_4:+76572393 | Msa0523270:CDS |
| AATTGTTGATTTCTAATCTA+TGG | 0.193483 | 3_4:-76572886 | None:intergenic |
| ACAAGTATGTTGTTCTTTCT+AGG | 0.205190 | 3_4:-76571123 | None:intergenic |
| TCGTCTTGTAGTTTATAAAA+TGG | 0.213244 | 3_4:+76573057 | Msa0523270:three_prime_UTR |
| TATGCAAATTAAACTCTTAC+AGG | 0.218654 | 3_4:-76570485 | None:intergenic |
| AGCTCTTGGATTGGAACTTT+TGG | 0.235539 | 3_4:-76571543 | None:intergenic |
| GGTAGGAAAACATGTTGATT+TGG | 0.267842 | 3_4:+76570130 | Msa0523270:five_prime_UTR |
| TTATAAAATGGTACATGAAA+TGG | 0.297176 | 3_4:+76573069 | Msa0523270:three_prime_UTR |
| TACTACCAAGCAGTATTCTT+TGG | 0.302862 | 3_4:+76569810 | Msa0523270:five_prime_UTR |
| GAGTCTAGAGAGAAACTATT+TGG | 0.303364 | 3_4:-76570196 | None:intergenic |
| CTGCACAGGTACGAAGTTTA+TGG | 0.304244 | 3_4:+76569915 | Msa0523270:five_prime_UTR |
| TCTAATCTATGGATGATTCT+TGG | 0.307783 | 3_4:-76572875 | None:intergenic |
| TGTTCATAAATATCAATTAC+AGG | 0.312644 | 3_4:-76570263 | None:intergenic |
| GTATAAAACTTTGTGGTGTT+TGG | 0.315282 | 3_4:-76570550 | None:intergenic |
| CGTGGTAAGGGTTCATTTGT+TGG | 0.324680 | 3_4:-76570104 | None:intergenic |
| CAAGAACAGATAATCTTTCA+TGG | 0.324979 | 3_4:-76570163 | None:intergenic |
| TGAAGTCATTATGTAATCTA+TGG | 0.325468 | 3_4:+76573004 | Msa0523270:three_prime_UTR |
| GTAGGAAAACATGTTGATTT+GGG | 0.327739 | 3_4:+76570131 | Msa0523270:five_prime_UTR |
| GAACAAAATTAGATCCCTTA+TGG | 0.341629 | 3_4:-76570462 | None:intergenic |
| TTATAAACTACAAGACGAAT+TGG | 0.348330 | 3_4:-76573052 | None:intergenic |
| TGGGTTTGATGTTGGTTAAC+AGG | 0.348792 | 3_4:+76572821 | Msa0523270:three_prime_UTR |
| AAACCTATGCTTGTGGAGTT+TGG | 0.356150 | 3_4:+76569877 | Msa0523270:five_prime_UTR |
| GGTATGATGCACAAGTTATC+TGG | 0.357598 | 3_4:+76570751 | Msa0523270:exon |
| GTTTGTTATTCACATTTATA+CGG | 0.363522 | 3_4:+76569761 | Msa0523270:five_prime_UTR |
| TATAAACTACAAGACGAATT+GGG | 0.365585 | 3_4:-76573051 | None:intergenic |
| ATGAGTCAGGGATACACATT+TGG | 0.372896 | 3_4:+76571508 | Msa0523270:CDS |
| TCGTTCTCACATCCCAAAAC+TGG | 0.382275 | 3_4:-76570831 | None:intergenic |
| GTTACAGCAGAGCATGAGTC+AGG | 0.388558 | 3_4:+76571495 | Msa0523270:CDS |
| CGGATTACATATTGTCCATA+AGG | 0.388661 | 3_4:+76570447 | Msa0523270:five_prime_UTR |
| AAGTCCCAACCCCAGATCTT+AGG | 0.390699 | 3_4:-76570588 | None:intergenic |
| GCATCATACCAGCTGAATCT+TGG | 0.397662 | 3_4:-76570738 | None:intergenic |
| TATAAAATGGTACATGAAAT+GGG | 0.399439 | 3_4:+76573070 | Msa0523270:three_prime_UTR |
| TTTCATTAGGACCTAAGATC+TGG | 0.411117 | 3_4:+76570577 | Msa0523270:five_prime_UTR |
| TGTCAGTAATTTCCTGCCTC+TGG | 0.411250 | 3_4:+76572753 | Msa0523270:three_prime_UTR |
| ATCACAGGCTAACAGTTGTT+TGG | 0.422909 | 3_4:-76570394 | None:intergenic |
| CATCATACCAGCTGAATCTT+GGG | 0.436579 | 3_4:-76570737 | None:intergenic |
| GTTCCAATCCAAGAGCTTCC+AGG | 0.440106 | 3_4:+76571549 | Msa0523270:CDS |
| AGCAGTGACTATCAACATAA+AGG | 0.444601 | 3_4:-76570624 | None:intergenic |
| AGTATTCTTTGGTGGCCAAC+TGG | 0.446267 | 3_4:+76569821 | Msa0523270:five_prime_UTR |
| AGGATCATTCCGTCATACTC+TGG | 0.448892 | 3_4:-76571866 | None:intergenic |
| ATTTGGATATTTCAGAGTGC+TGG | 0.449472 | 3_4:+76572181 | Msa0523270:intron |
| AAACCTCGTATAAAACTTTG+TGG | 0.450594 | 3_4:-76570557 | None:intergenic |
| GGTAATCAACACTGCGGACA+TGG | 0.453337 | 3_4:-76571098 | None:intergenic |
| AGCAGAGTCATCTGTCCGTT+TGG | 0.453401 | 3_4:+76572344 | Msa0523270:CDS |
| ATCATAAACTGTGGCATCAC+AGG | 0.455515 | 3_4:-76570409 | None:intergenic |
| TAAAATGTTGTTTGAATGAG+AGG | 0.457098 | 3_4:+76570316 | Msa0523270:five_prime_UTR |
| TTTCAGTTGGTAACTCATCA+TGG | 0.473525 | 3_4:-76572243 | None:intergenic |
| GTTGTTGGTGGGTTTGATGT+TGG | 0.478991 | 3_4:+76572813 | Msa0523270:three_prime_UTR |
| GTGTGTGGCCTGGAAGCTCT+TGG | 0.488370 | 3_4:-76571557 | None:intergenic |
| TTCATTAGGACCTAAGATCT+GGG | 0.489009 | 3_4:+76570578 | Msa0523270:five_prime_UTR |
| TTATTATTCAAGTTACCGTT+AGG | 0.491647 | 3_4:+76570069 | Msa0523270:five_prime_UTR |
| TGGCCTGGAAGCTCTTGGAT+TGG | 0.492026 | 3_4:-76571552 | None:intergenic |
| CAAGTTATCTGGAGGGGCAT+GGG | 0.493455 | 3_4:+76570762 | Msa0523270:CDS |
| ATACACAACAAGATGACAAA+TGG | 0.494740 | 3_4:-76572731 | None:intergenic |
| TTTCCTACCCTTCGTGGTAA+GGG | 0.497666 | 3_4:-76570116 | None:intergenic |
| AGGACCTAAGATCTGGGGTT+GGG | 0.502704 | 3_4:+76570584 | Msa0523270:five_prime_UTR |
| GGATTACATATTGTCCATAA+GGG | 0.509868 | 3_4:+76570448 | Msa0523270:five_prime_UTR |
| GTATGTTGTTCTTTCTAGGA+TGG | 0.511077 | 3_4:-76571119 | None:intergenic |
| TGAGTCAGGGATACACATTT+GGG | 0.511412 | 3_4:+76571509 | Msa0523270:CDS |
| TACCAAGCAGTATTCTTTGG+TGG | 0.512861 | 3_4:+76569813 | Msa0523270:five_prime_UTR |
| ATAGTTTCTCTCTAGACTCT+AGG | 0.513395 | 3_4:+76570200 | Msa0523270:five_prime_UTR |
| AGAGTATGACGGAATGATCC+TGG | 0.518026 | 3_4:+76571868 | Msa0523270:CDS |
| TAAGAATATGACCTTTCAGT+TGG | 0.519260 | 3_4:-76572256 | None:intergenic |
| CATCTTTGTCCTATGACGGA+AGG | 0.525463 | 3_4:+76572541 | Msa0523270:CDS |
| TATCTCAAGACTCCAGAGGC+AGG | 0.525960 | 3_4:-76572765 | None:intergenic |
| AACGGACAGATGACTCTGCT+TGG | 0.526905 | 3_4:-76572341 | None:intergenic |
| AGTTGTTTGGAGAAATCCAT+TGG | 0.528695 | 3_4:-76570381 | None:intergenic |
| AACAGGATTAGATGTTACAT+TGG | 0.530626 | 3_4:+76572838 | Msa0523270:three_prime_UTR |
| GACTCAACATAGTTGTTGGT+GGG | 0.532509 | 3_4:+76572802 | Msa0523270:three_prime_UTR |
| ATGATATAAGCCACTGAGAA+CGG | 0.535400 | 3_4:+76570427 | Msa0523270:five_prime_UTR |
| TTCTTTGGTGGCCAACTGGA+AGG | 0.536489 | 3_4:+76569825 | Msa0523270:five_prime_UTR |
| ACAAGTTATCTGGAGGGGCA+TGG | 0.538022 | 3_4:+76570761 | Msa0523270:CDS |
| ATAACAAACATATACTAAAG+AGG | 0.542163 | 3_4:-76569747 | None:intergenic |
| TGAATCTTGGGATTGTACCT+AGG | 0.545446 | 3_4:-76570725 | None:intergenic |
| CATCCAAACTCCACAAGCAT+AGG | 0.548901 | 3_4:-76569880 | None:intergenic |
| AATTTATCATGCCTTCCAGT+TGG | 0.550107 | 3_4:-76569836 | None:intergenic |
| TGTAAGAGTTTAATTTGCAT+AGG | 0.552574 | 3_4:+76570487 | Msa0523270:five_prime_UTR |
| GTACAATCCCAAGATTCAGC+TGG | 0.553955 | 3_4:+76570730 | Msa0523270:five_prime_UTR |
| AGGTACCAATGTGTGTGGCC+TGG | 0.555057 | 3_4:-76571567 | None:intergenic |
| TGTTTGGCTTGCATTAAGAA+TGG | 0.555642 | 3_4:-76570534 | None:intergenic |
| TGGTTTATTATGACACCTAA+CGG | 0.556026 | 3_4:-76570084 | None:intergenic |
| AAAACATGTTGATTTGGGAG+AGG | 0.556371 | 3_4:+76570136 | Msa0523270:five_prime_UTR |
| TTTGCATCTTTGTCCTATGA+CGG | 0.559496 | 3_4:+76572537 | Msa0523270:CDS |
| GATATTTCAGAGTGCTGGAA+CGG | 0.562762 | 3_4:+76572186 | Msa0523270:intron |
| ACTTCATGAATTACATAACA+TGG | 0.563467 | 3_4:-76572987 | None:intergenic |
| ATAAACTACAAGACGAATTG+GGG | 0.564341 | 3_4:-76573050 | None:intergenic |
| GGATCATTCCGTCATACTCT+GGG | 0.565346 | 3_4:-76571865 | None:intergenic |
| AGACTCAACATAGTTGTTGG+TGG | 0.572934 | 3_4:+76572801 | Msa0523270:three_prime_UTR |
| CATGGAGTTCTCGTCAACCA+TGG | 0.573556 | 3_4:+76572511 | Msa0523270:CDS |
| TGAAGACTCAACATAGTTGT+TGG | 0.580201 | 3_4:+76572798 | Msa0523270:three_prime_UTR |
| TAGGACCTAAGATCTGGGGT+TGG | 0.584421 | 3_4:+76570583 | Msa0523270:five_prime_UTR |
| ATCTTTGTCCTATGACGGAA+GGG | 0.591572 | 3_4:+76572542 | Msa0523270:CDS |
| CTATGGATGATTCTTGGTCA+AGG | 0.595963 | 3_4:-76572869 | None:intergenic |
| GTAATCAACACTGCGGACAT+GGG | 0.601319 | 3_4:-76571097 | None:intergenic |
| GGCCACCAAAGAATACTGCT+TGG | 0.601632 | 3_4:-76569815 | None:intergenic |
| AGCTTCCAGGCCACACACAT+TGG | 0.602394 | 3_4:+76571562 | Msa0523270:CDS |
| AAATGAACCCTTACCACGAA+GGG | 0.609845 | 3_4:+76570109 | Msa0523270:five_prime_UTR |
| TAAGCAGTGGATCAACCAAA+CGG | 0.612697 | 3_4:-76572359 | None:intergenic |
| TCATTAGGACCTAAGATCTG+GGG | 0.615268 | 3_4:+76570579 | Msa0523270:five_prime_UTR |
| CTGTTGATGAGTGAAGATAT+TGG | 0.616341 | 3_4:+76570358 | Msa0523270:five_prime_UTR |
| TTTAAAATACAATAGTGAAG+AGG | 0.617849 | 3_4:+76570225 | Msa0523270:five_prime_UTR |
| TTGATGTTGAGATTCACACT+TGG | 0.621050 | 3_4:-76573102 | None:intergenic |
| GCTACAGAATTCATGTCATG+TGG | 0.621870 | 3_4:-76570787 | None:intergenic |
| ATGATGCACAAGTTATCTGG+AGG | 0.622737 | 3_4:+76570754 | Msa0523270:CDS |
| ATGATGAGTTACCAACTGAA+AGG | 0.627881 | 3_4:+76572245 | Msa0523270:CDS |
| CGGATTCGACTGTCAACTTG+TGG | 0.630246 | 3_4:+76572206 | Msa0523270:CDS |
| TTACAGCAGAGCATGAGTCA+GGG | 0.635696 | 3_4:+76571496 | Msa0523270:CDS |
| TCACTGTATGTATTAAGCAG+TGG | 0.636494 | 3_4:-76572372 | None:intergenic |
| TTCGACTGTCAACTTGTGGT+CGG | 0.636828 | 3_4:+76572210 | Msa0523270:CDS |
| TGTTTCCAAGAAAACTGCAC+AGG | 0.638150 | 3_4:+76569901 | Msa0523270:five_prime_UTR |
| ATGATGAAAACCTATGCTTG+TGG | 0.640743 | 3_4:+76569870 | Msa0523270:five_prime_UTR |
| GAACCCTTACCACGAAGGGT+AGG | 0.640850 | 3_4:+76570113 | Msa0523270:five_prime_UTR |
| TGATGCACAAGTTATCTGGA+GGG | 0.643534 | 3_4:+76570755 | Msa0523270:CDS |
| AAGTGTAACCCAGAGTATGA+CGG | 0.647448 | 3_4:+76571857 | Msa0523270:CDS |
| ATGCAAATTAAACTCTTACA+GGG | 0.649398 | 3_4:-76570484 | None:intergenic |
| TCATACAGTGGGAAAAGAAG+CGG | 0.653495 | 3_4:-76573133 | None:intergenic |
| GATGCACAAGTTATCTGGAG+GGG | 0.654578 | 3_4:+76570756 | Msa0523270:CDS |
| GGAGTCTTGAGATAAACAGA+TGG | 0.657500 | 3_4:+76572774 | Msa0523270:three_prime_UTR |
| CAAATGAACCCTTACCACGA+AGG | 0.658427 | 3_4:+76570108 | Msa0523270:five_prime_UTR |
| TAACTCATCATGGTTTATCG+AGG | 0.659409 | 3_4:-76572233 | None:intergenic |
| TGAGTGAAGATATTGGCCAA+TGG | 0.660893 | 3_4:+76570365 | Msa0523270:five_prime_UTR |
| TGTTTATCTCAAGACTCCAG+AGG | 0.679790 | 3_4:-76572769 | None:intergenic |
| GTGGCTTATATCATAAACTG+TGG | 0.700049 | 3_4:-76570418 | None:intergenic |
| AATATGTAATCCGTTCTCAG+TGG | 0.716416 | 3_4:-76570437 | None:intergenic |
| ATGACAGGTACCAATGTGTG+TGG | 0.738267 | 3_4:-76571572 | None:intergenic |
| TAGGATGGTAATCAACACTG+CGG | 0.802826 | 3_4:-76571104 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATACATTAATTTTTATTGA+TGG | + | chr3_4:76571359-76571378 | Msa0523270:intron | 10.0% |
| !!! | ATACATTAATTTTTATTGAT+GGG | + | chr3_4:76571360-76571379 | Msa0523270:intron | 10.0% |
| !! | TTTAATGAAATAAAAAAAGT+AGG | - | chr3_4:76571739-76571758 | None:intergenic | 10.0% |
| !! | TAACAAAAAAAAAAACTACT+TGG | - | chr3_4:76571002-76571021 | None:intergenic | 15.0% |
| !! | ATATTATAAAACCAAATAGA+AGG | - | chr3_4:76571196-76571215 | None:intergenic | 15.0% |
| !! | AAAGAAAATAAACTATTTGA+TGG | + | chr3_4:76571767-76571786 | Msa0523270:intron | 15.0% |
| !! | AAATTATATGTCATTGAATT+TGG | + | chr3_4:76572164-76572183 | Msa0523270:intron | 15.0% |
| !!! | TCAATTTTTATTCATTTTAC+AGG | + | chr3_4:76572483-76572502 | Msa0523270:intron | 15.0% |
| !!! | CAATTTTTATTCATTTTACA+GGG | + | chr3_4:76572484-76572503 | Msa0523270:intron | 15.0% |
| !! | TTATTTAGATCAGTTTATTT+GGG | - | chr3_4:76572623-76572642 | None:intergenic | 15.0% |
| !!! | ATTAGAAATCAACAATTTTT+TGG | + | chr3_4:76572892-76572911 | Msa0523270:three_prime_UTR | 15.0% |
| !! | ATAACAAACATATACTAAAG+AGG | - | chr3_4:76569750-76569769 | None:intergenic | 20.0% |
| !!! | GTTTGTTATTCACATTTATA+CGG | + | chr3_4:76569761-76569780 | Msa0523270:five_prime_UTR | 20.0% |
| !!! | CTGATATGTATTTTCTTTTT+TGG | - | chr3_4:76570032-76570051 | None:intergenic | 20.0% |
| !!! | TTTAAAATACAATAGTGAAG+AGG | + | chr3_4:76570225-76570244 | Msa0523270:five_prime_UTR | 20.0% |
| !! | TGTTCATAAATATCAATTAC+AGG | - | chr3_4:76570266-76570285 | None:intergenic | 20.0% |
| !!! | TCAAACAACATTTTAAGATT+CGG | - | chr3_4:76570311-76570330 | None:intergenic | 20.0% |
| !! | CAATGAGTAATTTACTTAAA+TGG | - | chr3_4:76570926-76570945 | None:intergenic | 20.0% |
| !! | AATTGGATTATTTAAATCAC+AGG | + | chr3_4:76571052-76571071 | Msa0523270:intron | 20.0% |
| !! | ATGAAATAAAAAAAGTAGGT+AGG | - | chr3_4:76571735-76571754 | None:intergenic | 20.0% |
| !! | ATATCACACACAAATAAATA+CGG | + | chr3_4:76571979-76571998 | Msa0523270:intron | 20.0% |
| !! | TATTTAGATCAGTTTATTTG+GGG | - | chr3_4:76572622-76572641 | None:intergenic | 20.0% |
| !! | GTTATTTAGATCAGTTTATT+TGG | - | chr3_4:76572624-76572643 | None:intergenic | 20.0% |
| !!! | AATTGTTGATTTCTAATCTA+TGG | - | chr3_4:76572889-76572908 | None:intergenic | 20.0% |
| !! | GTGATTTCTATCATATTATT+TGG | + | chr3_4:76572956-76572975 | Msa0523270:three_prime_UTR | 20.0% |
| !! | TTATAAAATGGTACATGAAA+TGG | + | chr3_4:76573069-76573088 | Msa0523270:three_prime_UTR | 20.0% |
| !! | TATAAAATGGTACATGAAAT+GGG | + | chr3_4:76573070-76573089 | Msa0523270:three_prime_UTR | 20.0% |
| !!! | ATAACATACATGTGTTTTTG+TGG | - | chr3_4:76569978-76569997 | None:intergenic | 25.0% |
| !! | TTATTATTCAAGTTACCGTT+AGG | + | chr3_4:76570069-76570088 | Msa0523270:five_prime_UTR | 25.0% |
| !! | TAAAATGTTGTTTGAATGAG+AGG | + | chr3_4:76570316-76570335 | Msa0523270:five_prime_UTR | 25.0% |
| ! | ATGCAAATTAAACTCTTACA+GGG | - | chr3_4:76570487-76570506 | None:intergenic | 25.0% |
| ! | TATGCAAATTAAACTCTTAC+AGG | - | chr3_4:76570488-76570507 | None:intergenic | 25.0% |
| !!! | TGTAAGAGTTTAATTTGCAT+AGG | + | chr3_4:76570487-76570506 | Msa0523270:five_prime_UTR | 25.0% |
| !! | TCCTAAATTCATTCTTTTAC+TGG | + | chr3_4:76570864-76570883 | Msa0523270:intron | 25.0% |
| ! | ACCAGTAAAAGAATGAATTT+AGG | - | chr3_4:76570868-76570887 | None:intergenic | 25.0% |
| ! | GAGTAATTTACTTAAATGGA+AGG | - | chr3_4:76570922-76570941 | None:intergenic | 25.0% |
| !! | AAAAAAACTACTTGGTTTGA+GGG | - | chr3_4:76570994-76571013 | None:intergenic | 25.0% |
| !! | AAAAAAAACTACTTGGTTTG+AGG | - | chr3_4:76570995-76571014 | None:intergenic | 25.0% |
| !! | AAACCAAATAGAAGGTATAA+AGG | - | chr3_4:76571188-76571207 | None:intergenic | 25.0% |
| ! | ATTCACCCAATGATATAATA+TGG | + | chr3_4:76571255-76571274 | Msa0523270:intron | 25.0% |
| ! | CCAATCCATATTATATCATT+GGG | - | chr3_4:76571263-76571282 | None:intergenic | 25.0% |
| !!! | AATTAATGTATTTTGACGCT+AGG | - | chr3_4:76571351-76571370 | None:intergenic | 25.0% |
| !! | TGAATTGCTATGTTATTTAC+AGG | + | chr3_4:76571473-76571492 | Msa0523270:intron | 25.0% |
| ! | TAGGTTATTTGTGCATTAAA+AGG | - | chr3_4:76571716-76571735 | None:intergenic | 25.0% |
| !!! | TAAAAAAAAGTTTGTTGCAG+AGG | - | chr3_4:76572013-76572032 | None:intergenic | 25.0% |
| !!! | TCTGCAACAAACTTTTTTTT+AGG | + | chr3_4:76572012-76572031 | Msa0523270:intron | 25.0% |
| !!! | CTGCAACAAACTTTTTTTTA+GGG | + | chr3_4:76572013-76572032 | Msa0523270:intron | 25.0% |
| ! | GATTATGAAGACAGTATTTA+TGG | + | chr3_4:76572393-76572412 | Msa0523270:CDS | 25.0% |
| ! | AATCTTATTGCTTACATGTT+TGG | + | chr3_4:76572579-76572598 | Msa0523270:intron | 25.0% |
| ! | ATCTTATTGCTTACATGTTT+GGG | + | chr3_4:76572580-76572599 | Msa0523270:intron | 25.0% |
| ! | ATTTAGATCAGTTTATTTGG+GGG | - | chr3_4:76572621-76572640 | None:intergenic | 25.0% |
| !!! | TGATGTTGAACATCATTTTT+TGG | - | chr3_4:76572697-76572716 | None:intergenic | 25.0% |
| ! | ACTTCATGAATTACATAACA+TGG | - | chr3_4:76572990-76573009 | None:intergenic | 25.0% |
| ! | TGAAGTCATTATGTAATCTA+TGG | + | chr3_4:76573004-76573023 | Msa0523270:three_prime_UTR | 25.0% |
| ! | TATAAACTACAAGACGAATT+GGG | - | chr3_4:76573054-76573073 | None:intergenic | 25.0% |
| ! | TTATAAACTACAAGACGAAT+TGG | - | chr3_4:76573055-76573074 | None:intergenic | 25.0% |
| ! | TCGTCTTGTAGTTTATAAAA+TGG | + | chr3_4:76573057-76573076 | Msa0523270:three_prime_UTR | 25.0% |
| TGGTTTATTATGACACCTAA+CGG | - | chr3_4:76570087-76570106 | None:intergenic | 30.0% | |
| !! | GTAGGAAAACATGTTGATTT+GGG | + | chr3_4:76570131-76570150 | Msa0523270:five_prime_UTR | 30.0% |
| CAAGAACAGATAATCTTTCA+TGG | - | chr3_4:76570166-76570185 | None:intergenic | 30.0% | |
| GGATTACATATTGTCCATAA+GGG | + | chr3_4:76570448-76570467 | Msa0523270:five_prime_UTR | 30.0% | |
| GAACAAAATTAGATCCCTTA+TGG | - | chr3_4:76570465-76570484 | None:intergenic | 30.0% | |
| GTATAAAACTTTGTGGTGTT+TGG | - | chr3_4:76570553-76570572 | None:intergenic | 30.0% | |
| AAACCTCGTATAAAACTTTG+TGG | - | chr3_4:76570560-76570579 | None:intergenic | 30.0% | |
| ! | GTTTTATACGAGGTTTCATT+AGG | + | chr3_4:76570564-76570583 | Msa0523270:five_prime_UTR | 30.0% |
| !!! | GTCACTGCTTTTTTAAAATC+TGG | + | chr3_4:76570638-76570657 | Msa0523270:five_prime_UTR | 30.0% |
| !!! | ACTGCTTTTTTAAAATCTGG+TGG | + | chr3_4:76570641-76570660 | Msa0523270:five_prime_UTR | 30.0% |
| !! | TGTTGTTTGTATGTTTTGAG+AGG | - | chr3_4:76570701-76570720 | None:intergenic | 30.0% |
| CATACAAACAACAAAAACCT+AGG | + | chr3_4:76570708-76570727 | Msa0523270:five_prime_UTR | 30.0% | |
| ! | TTTTGTTAATCAGTACCTGT+TGG | + | chr3_4:76571014-76571033 | Msa0523270:intron | 30.0% |
| GGAATTTCATGTCTACTAAT+TGG | + | chr3_4:76571035-76571054 | Msa0523270:intron | 30.0% | |
| ACAAGTATGTTGTTCTTTCT+AGG | - | chr3_4:76571126-76571145 | None:intergenic | 30.0% | |
| ATGCCTTTATACCTTCTATT+TGG | + | chr3_4:76571182-76571201 | Msa0523270:intron | 30.0% | |
| TATAATATCTGTGTCTGAGA+TGG | + | chr3_4:76571208-76571227 | Msa0523270:intron | 30.0% | |
| CCCAATGATATAATATGGAT+TGG | + | chr3_4:76571260-76571279 | Msa0523270:intron | 30.0% | |
| GCCAATCCATATTATATCAT+TGG | - | chr3_4:76571264-76571283 | None:intergenic | 30.0% | |
| !! | GCTTTAAAACTATACATGAC+AGG | - | chr3_4:76571590-76571609 | None:intergenic | 30.0% |
| AAGAGAAAAGAAAGTAGAAC+AGG | + | chr3_4:76571646-76571665 | Msa0523270:intron | 30.0% | |
| TATGTATTACTTGTATTGCC+AGG | + | chr3_4:76571822-76571841 | Msa0523270:intron | 30.0% | |
| ACACAAATAAATACGGACAA+GGG | + | chr3_4:76571986-76572005 | Msa0523270:intron | 30.0% | |
| TAAGAATATGACCTTTCAGT+TGG | - | chr3_4:76572259-76572278 | None:intergenic | 30.0% | |
| GACATAGTCTATAAAGATCA+TGG | - | chr3_4:76572460-76572479 | None:intergenic | 30.0% | |
| !! | AACCACTTTACTTTTCAAAC+AGG | + | chr3_4:76572641-76572660 | Msa0523270:intron | 30.0% |
| !!! | CATCATTTTTTGGAGATGAA+AGG | - | chr3_4:76572687-76572706 | None:intergenic | 30.0% |
| ATACACAACAAGATGACAAA+TGG | - | chr3_4:76572734-76572753 | None:intergenic | 30.0% | |
| AACAGGATTAGATGTTACAT+TGG | + | chr3_4:76572838-76572857 | Msa0523270:three_prime_UTR | 30.0% | |
| TCTAATCTATGGATGATTCT+TGG | - | chr3_4:76572878-76572897 | None:intergenic | 30.0% | |
| ATAAACTACAAGACGAATTG+GGG | - | chr3_4:76573053-76573072 | None:intergenic | 30.0% | |
| TACTACCAAGCAGTATTCTT+TGG | + | chr3_4:76569810-76569829 | Msa0523270:five_prime_UTR | 35.0% | |
| AATTTATCATGCCTTCCAGT+TGG | - | chr3_4:76569839-76569858 | None:intergenic | 35.0% | |
| ATGATGAAAACCTATGCTTG+TGG | + | chr3_4:76569870-76569889 | Msa0523270:five_prime_UTR | 35.0% | |
| ! | GGTAGGAAAACATGTTGATT+TGG | + | chr3_4:76570130-76570149 | Msa0523270:five_prime_UTR | 35.0% |
| !! | AAAACATGTTGATTTGGGAG+AGG | + | chr3_4:76570136-76570155 | Msa0523270:five_prime_UTR | 35.0% |
| GAGTCTAGAGAGAAACTATT+TGG | - | chr3_4:76570199-76570218 | None:intergenic | 35.0% | |
| ATAGTTTCTCTCTAGACTCT+AGG | + | chr3_4:76570200-76570219 | Msa0523270:five_prime_UTR | 35.0% | |
| !!! | AGAGGCATTTTAGAAAACGA+AGG | + | chr3_4:76570334-76570353 | Msa0523270:five_prime_UTR | 35.0% |
| !! | GAGGCATTTTAGAAAACGAA+GGG | + | chr3_4:76570335-76570354 | Msa0523270:five_prime_UTR | 35.0% |
| ! | CTGTTGATGAGTGAAGATAT+TGG | + | chr3_4:76570358-76570377 | Msa0523270:five_prime_UTR | 35.0% |
| AGTTGTTTGGAGAAATCCAT+TGG | - | chr3_4:76570384-76570403 | None:intergenic | 35.0% | |
| GTGGCTTATATCATAAACTG+TGG | - | chr3_4:76570421-76570440 | None:intergenic | 35.0% | |
| ATGATATAAGCCACTGAGAA+CGG | + | chr3_4:76570427-76570446 | Msa0523270:five_prime_UTR | 35.0% | |
| AATATGTAATCCGTTCTCAG+TGG | - | chr3_4:76570440-76570459 | None:intergenic | 35.0% | |
| CGGATTACATATTGTCCATA+AGG | + | chr3_4:76570447-76570466 | Msa0523270:five_prime_UTR | 35.0% | |
| !! | TGTTTGGCTTGCATTAAGAA+TGG | - | chr3_4:76570537-76570556 | None:intergenic | 35.0% |
| !! | ACACCACAAAGTTTTATACG+AGG | + | chr3_4:76570554-76570573 | Msa0523270:five_prime_UTR | 35.0% |
| TTTCATTAGGACCTAAGATC+TGG | + | chr3_4:76570577-76570596 | Msa0523270:five_prime_UTR | 35.0% | |
| TTCATTAGGACCTAAGATCT+GGG | + | chr3_4:76570578-76570597 | Msa0523270:five_prime_UTR | 35.0% | |
| AGCAGTGACTATCAACATAA+AGG | - | chr3_4:76570627-76570646 | None:intergenic | 35.0% | |
| !!! | GTTTGTATGTTTTGAGAGGA+GGG | - | chr3_4:76570697-76570716 | None:intergenic | 35.0% |
| !!! | TGTTTGTATGTTTTGAGAGG+AGG | - | chr3_4:76570698-76570717 | None:intergenic | 35.0% |
| ! | TGAATCATCTCTCCAGTTTT+GGG | + | chr3_4:76570819-76570838 | Msa0523270:CDS | 35.0% |
| !! | ACTCATTGCATTTCAAGTTC+AGG | + | chr3_4:76570938-76570957 | Msa0523270:intron | 35.0% |
| AGTAGACATGAAATTCCAAC+AGG | - | chr3_4:76571032-76571051 | None:intergenic | 35.0% | |
| ! | GTATGTTGTTCTTTCTAGGA+TGG | - | chr3_4:76571122-76571141 | None:intergenic | 35.0% |
| !! | TTCCCATTTGTTGTTACGAT+CGG | + | chr3_4:76571690-76571709 | Msa0523270:intron | 35.0% |
| CACACAAATAAATACGGACA+AGG | + | chr3_4:76571985-76572004 | Msa0523270:intron | 35.0% | |
| TTTATCTCAATCCTGAGCAA+GGG | - | chr3_4:76572047-76572066 | None:intergenic | 35.0% | |
| ATTTGGATATTTCAGAGTGC+TGG | + | chr3_4:76572181-76572200 | Msa0523270:intron | 35.0% | |
| TAACTCATCATGGTTTATCG+AGG | - | chr3_4:76572236-76572255 | None:intergenic | 35.0% | |
| !! | TTTCAGTTGGTAACTCATCA+TGG | - | chr3_4:76572246-76572265 | None:intergenic | 35.0% |
| ATGATGAGTTACCAACTGAA+AGG | + | chr3_4:76572245-76572264 | Msa0523270:CDS | 35.0% | |
| TTCATCTTTGCTCGCATATT+TGG | + | chr3_4:76572315-76572334 | Msa0523270:intron | 35.0% | |
| TCACTGTATGTATTAAGCAG+TGG | - | chr3_4:76572375-76572394 | None:intergenic | 35.0% | |
| GTATTTATGGTAAGAGCTTC+TGG | + | chr3_4:76572406-76572425 | Msa0523270:intron | 35.0% | |
| ! | TTCATTTTACAGGGCTTACA+TGG | + | chr3_4:76572493-76572512 | Msa0523270:intron | 35.0% |
| GACAAAGATGCAAAAATCCA+TGG | - | chr3_4:76572531-76572550 | None:intergenic | 35.0% | |
| TTTGCATCTTTGTCCTATGA+CGG | + | chr3_4:76572537-76572556 | Msa0523270:CDS | 35.0% | |
| CACCTGTTTGAAAAGTAAAG+TGG | - | chr3_4:76572646-76572665 | None:intergenic | 35.0% | |
| !! | CACTTTACTTTTCAAACAGG+TGG | + | chr3_4:76572644-76572663 | Msa0523270:intron | 35.0% |
| TGAAGACTCAACATAGTTGT+TGG | + | chr3_4:76572798-76572817 | Msa0523270:three_prime_UTR | 35.0% | |
| TTGATGTTGAGATTCACACT+TGG | - | chr3_4:76573105-76573124 | None:intergenic | 35.0% | |
| TACCAAGCAGTATTCTTTGG+TGG | + | chr3_4:76569813-76569832 | Msa0523270:five_prime_UTR | 40.0% | |
| AAACCTATGCTTGTGGAGTT+TGG | + | chr3_4:76569877-76569896 | Msa0523270:five_prime_UTR | 40.0% | |
| TGTTTCCAAGAAAACTGCAC+AGG | + | chr3_4:76569901-76569920 | Msa0523270:five_prime_UTR | 40.0% | |
| AAATGAACCCTTACCACGAA+GGG | + | chr3_4:76570109-76570128 | Msa0523270:five_prime_UTR | 40.0% | |
| TGAGTGAAGATATTGGCCAA+TGG | + | chr3_4:76570365-76570384 | Msa0523270:five_prime_UTR | 40.0% | |
| ATCACAGGCTAACAGTTGTT+TGG | - | chr3_4:76570397-76570416 | None:intergenic | 40.0% | |
| ATCATAAACTGTGGCATCAC+AGG | - | chr3_4:76570412-76570431 | None:intergenic | 40.0% | |
| TCATTAGGACCTAAGATCTG+GGG | + | chr3_4:76570579-76570598 | Msa0523270:five_prime_UTR | 40.0% | |
| TGAATCTTGGGATTGTACCT+AGG | - | chr3_4:76570728-76570747 | None:intergenic | 40.0% | |
| CATCATACCAGCTGAATCTT+GGG | - | chr3_4:76570740-76570759 | None:intergenic | 40.0% | |
| GGTATGATGCACAAGTTATC+TGG | + | chr3_4:76570751-76570770 | Msa0523270:exon | 40.0% | |
| ATGATGCACAAGTTATCTGG+AGG | + | chr3_4:76570754-76570773 | Msa0523270:CDS | 40.0% | |
| TGATGCACAAGTTATCTGGA+GGG | + | chr3_4:76570755-76570774 | Msa0523270:CDS | 40.0% | |
| GCTACAGAATTCATGTCATG+TGG | - | chr3_4:76570790-76570809 | None:intergenic | 40.0% | |
| ! | CTGAATCATCTCTCCAGTTT+TGG | + | chr3_4:76570818-76570837 | Msa0523270:CDS | 40.0% |
| !! | TGCATTTCAAGTTCAGGATC+TGG | + | chr3_4:76570944-76570963 | Msa0523270:intron | 40.0% |
| TAGGATGGTAATCAACACTG+CGG | - | chr3_4:76571107-76571126 | None:intergenic | 40.0% | |
| AGGCATGTATCAGTAGAATG+AGG | - | chr3_4:76571168-76571187 | None:intergenic | 40.0% | |
| CAACGTCTTTGTGTTCATGT+TGG | + | chr3_4:76571444-76571463 | Msa0523270:intron | 40.0% | |
| ATGAGTCAGGGATACACATT+TGG | + | chr3_4:76571508-76571527 | Msa0523270:CDS | 40.0% | |
| TGAGTCAGGGATACACATTT+GGG | + | chr3_4:76571509-76571528 | Msa0523270:CDS | 40.0% | |
| !! | AGCTCTTGGATTGGAACTTT+TGG | - | chr3_4:76571546-76571565 | None:intergenic | 40.0% |
| TTACTTGTATTGCCAGGACA+TGG | + | chr3_4:76571828-76571847 | Msa0523270:intron | 40.0% | |
| AAGTGTAACCCAGAGTATGA+CGG | + | chr3_4:76571857-76571876 | Msa0523270:CDS | 40.0% | |
| GTTTATCTCAATCCTGAGCA+AGG | - | chr3_4:76572048-76572067 | None:intergenic | 40.0% | |
| !! | GATATTTCAGAGTGCTGGAA+CGG | + | chr3_4:76572186-76572205 | Msa0523270:intron | 40.0% |
| TAAGCAGTGGATCAACCAAA+CGG | - | chr3_4:76572362-76572381 | None:intergenic | 40.0% | |
| ! | ATCTTTGTCCTATGACGGAA+GGG | + | chr3_4:76572542-76572561 | Msa0523270:CDS | 40.0% |
| ! | TTTTCTTACCCTTCCGTCAT+AGG | - | chr3_4:76572553-76572572 | None:intergenic | 40.0% |
| TGTTTATCTCAAGACTCCAG+AGG | - | chr3_4:76572772-76572791 | None:intergenic | 40.0% | |
| GGAGTCTTGAGATAAACAGA+TGG | + | chr3_4:76572774-76572793 | Msa0523270:three_prime_UTR | 40.0% | |
| AGACTCAACATAGTTGTTGG+TGG | + | chr3_4:76572801-76572820 | Msa0523270:three_prime_UTR | 40.0% | |
| GACTCAACATAGTTGTTGGT+GGG | + | chr3_4:76572802-76572821 | Msa0523270:three_prime_UTR | 40.0% | |
| ! | TGGGTTTGATGTTGGTTAAC+AGG | + | chr3_4:76572821-76572840 | Msa0523270:three_prime_UTR | 40.0% |
| CTATGGATGATTCTTGGTCA+AGG | - | chr3_4:76572872-76572891 | None:intergenic | 40.0% | |
| ! | AGTATTCTTTGGTGGCCAAC+TGG | + | chr3_4:76569821-76569840 | Msa0523270:five_prime_UTR | 45.0% |
| CATCCAAACTCCACAAGCAT+AGG | - | chr3_4:76569883-76569902 | None:intergenic | 45.0% | |
| ! | TCGTACCTGTGCAGTTTTCT+TGG | - | chr3_4:76569909-76569928 | None:intergenic | 45.0% |
| CTGCACAGGTACGAAGTTTA+TGG | + | chr3_4:76569915-76569934 | Msa0523270:five_prime_UTR | 45.0% | |
| CGTGGTAAGGGTTCATTTGT+TGG | - | chr3_4:76570107-76570126 | None:intergenic | 45.0% | |
| CAAATGAACCCTTACCACGA+AGG | + | chr3_4:76570108-76570127 | Msa0523270:five_prime_UTR | 45.0% | |
| TTTCCTACCCTTCGTGGTAA+GGG | - | chr3_4:76570119-76570138 | None:intergenic | 45.0% | |
| ! | TTTTCCTACCCTTCGTGGTA+AGG | - | chr3_4:76570120-76570139 | None:intergenic | 45.0% |
| ! | ACATGTTTTCCTACCCTTCG+TGG | - | chr3_4:76570125-76570144 | None:intergenic | 45.0% |
| !!! | TGTATGTTTTGAGAGGAGGG+TGG | - | chr3_4:76570694-76570713 | None:intergenic | 45.0% |
| GTACAATCCCAAGATTCAGC+TGG | + | chr3_4:76570730-76570749 | Msa0523270:five_prime_UTR | 45.0% | |
| GCATCATACCAGCTGAATCT+TGG | - | chr3_4:76570741-76570760 | None:intergenic | 45.0% | |
| GATGCACAAGTTATCTGGAG+GGG | + | chr3_4:76570756-76570775 | Msa0523270:CDS | 45.0% | |
| TCGTTCTCACATCCCAAAAC+TGG | - | chr3_4:76570834-76570853 | None:intergenic | 45.0% | |
| GTAATCAACACTGCGGACAT+GGG | - | chr3_4:76571100-76571119 | None:intergenic | 45.0% | |
| TTACAGCAGAGCATGAGTCA+GGG | + | chr3_4:76571496-76571515 | Msa0523270:CDS | 45.0% | |
| ATGACAGGTACCAATGTGTG+TGG | - | chr3_4:76571575-76571594 | None:intergenic | 45.0% | |
| GGCCGATCGTAACAACAAAT+GGG | - | chr3_4:76571695-76571714 | None:intergenic | 45.0% | |
| AGGCCGATCGTAACAACAAA+TGG | - | chr3_4:76571696-76571715 | None:intergenic | 45.0% | |
| ACACTTGACAATCCATGTCC+TGG | - | chr3_4:76571843-76571862 | None:intergenic | 45.0% | |
| GGATCATTCCGTCATACTCT+GGG | - | chr3_4:76571868-76571887 | None:intergenic | 45.0% | |
| AGGATCATTCCGTCATACTC+TGG | - | chr3_4:76571869-76571888 | None:intergenic | 45.0% | |
| ! | AGAGTATGACGGAATGATCC+TGG | + | chr3_4:76571868-76571887 | Msa0523270:CDS | 45.0% |
| TTCGACTGTCAACTTGTGGT+CGG | + | chr3_4:76572210-76572229 | Msa0523270:CDS | 45.0% | |
| ! | CATCTTTGTCCTATGACGGA+AGG | + | chr3_4:76572541-76572560 | Msa0523270:CDS | 45.0% |
| TGTCAGTAATTTCCTGCCTC+TGG | + | chr3_4:76572753-76572772 | Msa0523270:three_prime_UTR | 45.0% | |
| !! | GTTGTTGGTGGGTTTGATGT+TGG | + | chr3_4:76572813-76572832 | Msa0523270:three_prime_UTR | 45.0% |
| !!! | ATTTTATTTTTTTATTTGAA+AGG | + | chr3_4:76571612-76571631 | Msa0523270:intron | 5.0% |
| GGCCACCAAAGAATACTGCT+TGG | - | chr3_4:76569818-76569837 | None:intergenic | 50.0% | |
| ! | TTCTTTGGTGGCCAACTGGA+AGG | + | chr3_4:76569825-76569844 | Msa0523270:five_prime_UTR | 50.0% |
| ! | TAGGACCTAAGATCTGGGGT+TGG | + | chr3_4:76570583-76570602 | Msa0523270:five_prime_UTR | 50.0% |
| ! | AGGACCTAAGATCTGGGGTT+GGG | + | chr3_4:76570584-76570603 | Msa0523270:five_prime_UTR | 50.0% |
| AAGTCCCAACCCCAGATCTT+AGG | - | chr3_4:76570591-76570610 | None:intergenic | 50.0% | |
| ACAAGTTATCTGGAGGGGCA+TGG | + | chr3_4:76570761-76570780 | Msa0523270:CDS | 50.0% | |
| ! | CAAGTTATCTGGAGGGGCAT+GGG | + | chr3_4:76570762-76570781 | Msa0523270:CDS | 50.0% |
| AAGTTCAGGATCTGGTGTGC+TGG | + | chr3_4:76570952-76570971 | Msa0523270:intron | 50.0% | |
| GGTAATCAACACTGCGGACA+TGG | - | chr3_4:76571101-76571120 | None:intergenic | 50.0% | |
| GTTACAGCAGAGCATGAGTC+AGG | + | chr3_4:76571495-76571514 | Msa0523270:CDS | 50.0% | |
| GTTCCAATCCAAGAGCTTCC+AGG | + | chr3_4:76571549-76571568 | Msa0523270:CDS | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr3_4:76571898-76571917 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3_4:76571897-76571916 | None:intergenic | 50.0% | |
| GTACATATGCACAGACGCAC+TGG | + | chr3_4:76572098-76572117 | Msa0523270:intron | 50.0% | |
| CGGATTCGACTGTCAACTTG+TGG | + | chr3_4:76572206-76572225 | Msa0523270:CDS | 50.0% | |
| AACGGACAGATGACTCTGCT+TGG | - | chr3_4:76572344-76572363 | None:intergenic | 50.0% | |
| AGCAGAGTCATCTGTCCGTT+TGG | + | chr3_4:76572344-76572363 | Msa0523270:CDS | 50.0% | |
| CATGGAGTTCTCGTCAACCA+TGG | + | chr3_4:76572511-76572530 | Msa0523270:CDS | 50.0% | |
| TATCTCAAGACTCCAGAGGC+AGG | - | chr3_4:76572768-76572787 | None:intergenic | 50.0% | |
| GAACCCTTACCACGAAGGGT+AGG | + | chr3_4:76570113-76570132 | Msa0523270:five_prime_UTR | 55.0% | |
| AGGATCTGGTGTGCTGGAAG+AGG | + | chr3_4:76570958-76570977 | Msa0523270:intron | 55.0% | |
| GGATCTGGTGTGCTGGAAGA+GGG | + | chr3_4:76570959-76570978 | Msa0523270:intron | 55.0% | |
| TGGCCTGGAAGCTCTTGGAT+TGG | - | chr3_4:76571555-76571574 | None:intergenic | 55.0% | |
| AGCTTCCAGGCCACACACAT+TGG | + | chr3_4:76571562-76571581 | Msa0523270:CDS | 55.0% | |
| AGGTACCAATGTGTGTGGCC+TGG | - | chr3_4:76571570-76571589 | None:intergenic | 55.0% | |
| AGAGAGAGAGAGAGAGAGGG+AGG | - | chr3_4:76571895-76571914 | None:intergenic | 55.0% | |
| GGGTGAATACACCCTTGCTC+AGG | + | chr3_4:76572033-76572052 | Msa0523270:intron | 55.0% | |
| ! | TGCACAGACGCACTGGTGAA+AGG | + | chr3_4:76572105-76572124 | Msa0523270:intron | 55.0% |
| ! | ACAGACGCACTGGTGAAAGG+TGG | + | chr3_4:76572108-76572127 | Msa0523270:intron | 55.0% |
| ! | CAGACGCACTGGTGAAAGGT+GGG | + | chr3_4:76572109-76572128 | Msa0523270:intron | 55.0% |
| GTGTGTGGCCTGGAAGCTCT+TGG | - | chr3_4:76571560-76571579 | None:intergenic | 60.0% | |
| AGAGAGAGAGAGGGAGGACC+AGG | - | chr3_4:76571889-76571908 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 76569745 | 76573146 | 76569745 | ID=Msa0523270;Name=Msa0523270 |
| chr3_4 | mRNA | 76569745 | 76573146 | 76569745 | ID=Msa0523270-mRNA-1;Parent=Msa0523270;Name=Msa0523270-mRNA-1;_AED=0.15;_eAED=0.15;_QI=1009|1|1|1|1|1|8|442|184 |
| chr3_4 | exon | 76569745 | 76570857 | 76569745 | ID=Msa0523270-mRNA-1:exon:22212;Parent=Msa0523270-mRNA-1 |
| chr3_4 | exon | 76571074 | 76571143 | 76571074 | ID=Msa0523270-mRNA-1:exon:22213;Parent=Msa0523270-mRNA-1 |
| chr3_4 | exon | 76571495 | 76571583 | 76571495 | ID=Msa0523270-mRNA-1:exon:22214;Parent=Msa0523270-mRNA-1 |
| chr3_4 | exon | 76571844 | 76571889 | 76571844 | ID=Msa0523270-mRNA-1:exon:22215;Parent=Msa0523270-mRNA-1 |
| chr3_4 | exon | 76572196 | 76572266 | 76572196 | ID=Msa0523270-mRNA-1:exon:22216;Parent=Msa0523270-mRNA-1 |
| chr3_4 | exon | 76572341 | 76572414 | 76572341 | ID=Msa0523270-mRNA-1:exon:22217;Parent=Msa0523270-mRNA-1 |
| chr3_4 | exon | 76572505 | 76572563 | 76572505 | ID=Msa0523270-mRNA-1:exon:22218;Parent=Msa0523270-mRNA-1 |
| chr3_4 | exon | 76572663 | 76573146 | 76572663 | ID=Msa0523270-mRNA-1:exon:22219;Parent=Msa0523270-mRNA-1 |
| chr3_4 | five_prime_UTR | 76569745 | 76570753 | 76569745 | ID=Msa0523270-mRNA-1:five_prime_utr;Parent=Msa0523270-mRNA-1 |
| chr3_4 | CDS | 76570754 | 76570857 | 76570754 | ID=Msa0523270-mRNA-1:cds;Parent=Msa0523270-mRNA-1 |
| chr3_4 | CDS | 76571074 | 76571143 | 76571074 | ID=Msa0523270-mRNA-1:cds;Parent=Msa0523270-mRNA-1 |
| chr3_4 | CDS | 76571495 | 76571583 | 76571495 | ID=Msa0523270-mRNA-1:cds;Parent=Msa0523270-mRNA-1 |
| chr3_4 | CDS | 76571844 | 76571889 | 76571844 | ID=Msa0523270-mRNA-1:cds;Parent=Msa0523270-mRNA-1 |
| chr3_4 | CDS | 76572196 | 76572266 | 76572196 | ID=Msa0523270-mRNA-1:cds;Parent=Msa0523270-mRNA-1 |
| chr3_4 | CDS | 76572341 | 76572414 | 76572341 | ID=Msa0523270-mRNA-1:cds;Parent=Msa0523270-mRNA-1 |
| chr3_4 | CDS | 76572505 | 76572563 | 76572505 | ID=Msa0523270-mRNA-1:cds;Parent=Msa0523270-mRNA-1 |
| chr3_4 | CDS | 76572663 | 76572704 | 76572663 | ID=Msa0523270-mRNA-1:cds;Parent=Msa0523270-mRNA-1 |
| chr3_4 | three_prime_UTR | 76572705 | 76573146 | 76572705 | ID=Msa0523270-mRNA-1:three_prime_utr;Parent=Msa0523270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
