Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154640 | XP_024625893.1 | 94.898 | 686 | 33 | 2 | 1 | 686 | 1 | 684 | 0.0 | 1294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154640 | sp|Q9LZY0|MA654_ARATH | 47.450 | 706 | 313 | 12 | 1 | 678 | 1 | 676 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154640 | A0A396H081 | 94.898 | 686 | 33 | 2 | 1 | 686 | 354 | 1037 | 0.0 | 1289 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094780 | Msa1154640 | 0.805105 | 1.567294e-49 | -8.615850e-47 |
| Msa0833650 | Msa1154640 | 0.800309 | 1.530723e-48 | -8.615850e-47 |
| Msa1051240 | Msa1154640 | 0.916288 | 2.133948e-85 | -8.615850e-47 |
| Msa1132840 | Msa1154640 | 0.806740 | 7.102927e-50 | -8.615850e-47 |
| Msa0580370 | Msa1154640 | 0.800857 | 1.183760e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154640 | MtrunA17_Chr7g0245851 | 94.898 | 686 | 33 | 2 | 1 | 686 | 354 | 1037 | 0.0 | 1289 |
| Msa1154640 | MtrunA17_Chr1g0188201 | 48.276 | 725 | 316 | 13 | 9 | 680 | 9 | 727 | 0.0 | 590 |
| Msa1154640 | MtrunA17_Chr6g0476051 | 48.664 | 711 | 307 | 16 | 13 | 680 | 14 | 709 | 0.0 | 586 |
| Msa1154640 | MtrunA17_Chr5g0444881 | 43.269 | 520 | 280 | 5 | 13 | 518 | 13 | 531 | 4.39e-133 | 404 |
| Msa1154640 | MtrunA17_Chr1g0164981 | 42.193 | 538 | 288 | 6 | 1 | 516 | 1 | 537 | 2.52e-126 | 387 |
| Msa1154640 | MtrunA17_Chr8g0354131 | 39.889 | 539 | 308 | 7 | 9 | 533 | 8 | 544 | 1.73e-124 | 381 |
| Msa1154640 | MtrunA17_Chr3g0122591 | 38.416 | 505 | 294 | 6 | 13 | 501 | 17 | 520 | 7.71e-112 | 350 |
| Msa1154640 | MtrunA17_Chr8g0345241 | 34.585 | 506 | 290 | 11 | 14 | 502 | 14 | 495 | 1.69e-74 | 248 |
| Msa1154640 | MtrunA17_Chr4g0039561 | 50.000 | 54 | 27 | 0 | 24 | 77 | 144 | 197 | 6.29e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154640 | AT3G60840.1 | 47.450 | 706 | 313 | 12 | 1 | 678 | 1 | 676 | 0.0 | 547 |
| Msa1154640 | AT5G51600.1 | 48.281 | 698 | 321 | 15 | 13 | 680 | 13 | 700 | 0.0 | 544 |
| Msa1154640 | AT4G26760.1 | 43.123 | 538 | 288 | 7 | 13 | 543 | 13 | 539 | 4.53e-135 | 409 |
| Msa1154640 | AT5G62250.2 | 46.784 | 513 | 256 | 6 | 10 | 507 | 4 | 514 | 4.81e-134 | 405 |
| Msa1154640 | AT5G62250.1 | 46.784 | 513 | 256 | 6 | 10 | 507 | 4 | 514 | 4.81e-134 | 405 |
| Msa1154640 | AT5G55230.3 | 40.415 | 579 | 316 | 8 | 13 | 586 | 13 | 567 | 1.25e-129 | 395 |
| Msa1154640 | AT5G55230.1 | 40.415 | 579 | 316 | 8 | 13 | 586 | 13 | 567 | 1.25e-129 | 395 |
| Msa1154640 | AT1G14690.1 | 41.463 | 533 | 294 | 7 | 14 | 529 | 16 | 547 | 1.50e-128 | 393 |
| Msa1154640 | AT1G14690.2 | 41.463 | 533 | 294 | 7 | 14 | 529 | 16 | 547 | 1.50e-128 | 393 |
| Msa1154640 | AT2G01910.1 | 40.700 | 543 | 300 | 6 | 2 | 523 | 4 | 545 | 1.75e-126 | 388 |
| Msa1154640 | AT5G55230.2 | 38.487 | 608 | 316 | 10 | 13 | 586 | 13 | 596 | 2.26e-125 | 385 |
| Msa1154640 | AT2G38720.1 | 41.429 | 490 | 278 | 4 | 19 | 502 | 12 | 498 | 2.68e-114 | 355 |
| Msa1154640 | AT2G01910.2 | 40.594 | 505 | 278 | 6 | 40 | 523 | 1 | 504 | 5.64e-114 | 354 |
| Msa1154640 | AT1G27920.1 | 36.641 | 524 | 317 | 7 | 13 | 523 | 17 | 538 | 2.04e-107 | 337 |
| Msa1154640 | AT1G27920.2 | 36.041 | 394 | 242 | 5 | 13 | 398 | 17 | 408 | 1.87e-73 | 243 |
Find 138 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCACAAGTTCTTTCATTT+TGG | 0.111167 | 7_4:+42186401 | None:intergenic |
| ACGGAAGGTCCCATGTTATT+TGG | 0.176455 | 7_4:+42184444 | None:intergenic |
| GGGTGGAAGGATGGTTCTTT+TGG | 0.206856 | 7_4:-42184080 | Msa1154640:three_prime_UTR |
| GGAAAGGAAGAAGCAGTTTA+TGG | 0.221225 | 7_4:-42187359 | Msa1154640:CDS |
| TTGTTGAATGTAAGGTAATA+TGG | 0.249209 | 7_4:-42187762 | Msa1154640:intron |
| CACATTCTTATTACTGTAAT+GGG | 0.254203 | 7_4:-42184153 | Msa1154640:three_prime_UTR |
| ATTCTCTTTGCTGCACTTTG+TGG | 0.287296 | 7_4:+42184666 | None:intergenic |
| TCTTCATCTCCAGCAATAAA+TGG | 0.288225 | 7_4:+42184477 | None:intergenic |
| CCAGAGTCAATTGACTCTAT+TGG | 0.292481 | 7_4:+42186303 | None:intergenic |
| GAGAGGGGTTTCCTAGTTAA+TGG | 0.293509 | 7_4:+42184630 | None:intergenic |
| TGTTGGTGGTGCTATGCTTC+AGG | 0.301084 | 7_4:-42184889 | Msa1154640:CDS |
| TAGTTTGAGCCTAAGTCTTT+TGG | 0.307044 | 7_4:-42187445 | Msa1154640:CDS |
| ATTCTCTTTCTCCTGCCTTA+AGG | 0.307312 | 7_4:+42185174 | None:intergenic |
| ATAAGAATGTGCTTTAACTT+TGG | 0.321430 | 7_4:+42184165 | None:intergenic |
| AGTTCGTTGTGCTCGGTTCT+CGG | 0.326979 | 7_4:-42186947 | Msa1154640:CDS |
| CAGCTTCACGTTCTTTCTTC+AGG | 0.327008 | 7_4:+42187419 | None:intergenic |
| GATAGGACTGTTGCGGAAAC+AGG | 0.329463 | 7_4:+42184606 | None:intergenic |
| CCTTCCAAGCCATTTATTGC+TGG | 0.333179 | 7_4:-42184486 | Msa1154640:CDS |
| GACCAGTAAAATTGCTGCTT+TGG | 0.338584 | 7_4:-42186618 | Msa1154640:CDS |
| ATCGTTGCTTAAGGAACTTC+AGG | 0.343128 | 7_4:-42187929 | Msa1154640:intron |
| CGCCTTCTCAGCTCGTTTCA+AGG | 0.345361 | 7_4:+42185749 | None:intergenic |
| TCCAGGAAAGGGTACCTCTA+AGG | 0.345797 | 7_4:-42184715 | Msa1154640:intron |
| GGAGATGCGCAAGTTGAAAA+TGG | 0.348943 | 7_4:-42187380 | Msa1154640:CDS |
| CAAAAGAGTGAAATGCTAAT+AGG | 0.352232 | 7_4:-42184516 | Msa1154640:CDS |
| GATCACGATGGAAGACGAAT+TGG | 0.354582 | 7_4:+42188907 | None:intergenic |
| TGCTCAATGACTCAGTAGTT+TGG | 0.354909 | 7_4:-42184286 | Msa1154640:exon |
| CCCAAGTAAAAGTGGGATAA+AGG | 0.358396 | 7_4:-42184955 | Msa1154640:CDS |
| TTGTCAATTGATAGTATGTT+AGG | 0.375913 | 7_4:+42186578 | None:intergenic |
| CAAAGTGCAGCAAAGAGAAT+TGG | 0.383132 | 7_4:-42184663 | Msa1154640:CDS |
| CACTCTTAGTTCGTTGTGCT+CGG | 0.390070 | 7_4:-42186954 | Msa1154640:CDS |
| GCACATTCTTATTACTGTAA+TGG | 0.392847 | 7_4:-42184154 | Msa1154640:three_prime_UTR |
| GTTGTGCTCGGTTCTCGGTC+TGG | 0.395300 | 7_4:-42186942 | Msa1154640:CDS |
| GAAACAGGTATCTGATCAAC+TGG | 0.395479 | 7_4:-42186978 | Msa1154640:CDS |
| GTTGGAGTTGTGGAATTTGA+TGG | 0.397927 | 7_4:-42186678 | Msa1154640:CDS |
| TGAATGATCATAAACCTTAG+AGG | 0.404744 | 7_4:+42184701 | None:intergenic |
| GCAGGCCAGTCGACTGAAAC+AGG | 0.405886 | 7_4:-42186993 | Msa1154640:intron |
| ATCATTTGAGTATTCATTTG+AGG | 0.407218 | 7_4:-42184343 | Msa1154640:CDS |
| GGCTACACCAGACACTTCTA+AGG | 0.407521 | 7_4:-42184385 | Msa1154640:CDS |
| CGAAATAGAACAAATGTGTC+TGG | 0.410171 | 7_4:-42187695 | Msa1154640:CDS |
| TAGGATGAAAAGAGACTAAA+GGG | 0.413010 | 7_4:-42185023 | Msa1154640:CDS |
| GCAGCAGCCTTAGAAGTGTC+TGG | 0.417706 | 7_4:+42184378 | None:intergenic |
| AGGTTGAGAGAGAAGTTAGA+AGG | 0.425631 | 7_4:-42186443 | Msa1154640:CDS |
| GAGAAAGAAGACGGAGTTAG+AGG | 0.430151 | 7_4:-42186379 | Msa1154640:CDS |
| AGTGAGCTCCATGGCAGCGC+AGG | 0.431997 | 7_4:-42187307 | Msa1154640:CDS |
| GGAACTCCTGTTGAACATCT+AGG | 0.432315 | 7_4:+42184930 | None:intergenic |
| GCTTGCATTTGTTCTGCAAT+TGG | 0.433342 | 7_4:-42187589 | Msa1154640:CDS |
| AGCTTTAAAAGTTGCAGCAT+GGG | 0.441194 | 7_4:-42185410 | Msa1154640:CDS |
| ATTCGTCTTCCATCGTGATC+AGG | 0.443412 | 7_4:-42188904 | Msa1154640:intron |
| ATCTCCAGCAATAAATGGCT+TGG | 0.444676 | 7_4:+42184482 | None:intergenic |
| TTTGAAGAGTAAGACTGGTT+TGG | 0.447081 | 7_4:-42184227 | Msa1154640:three_prime_UTR |
| AAGGCTCCTAGATGTTCAAC+AGG | 0.457071 | 7_4:-42184936 | Msa1154640:CDS |
| GCTGGCTGGAGGAGTACAAC+AGG | 0.461822 | 7_4:-42185904 | Msa1154640:CDS |
| TGCGCTGCCATGGAGCTCAC+TGG | 0.465412 | 7_4:+42187309 | None:intergenic |
| TTGCTGGAGATGAAGAGAAC+AGG | 0.470413 | 7_4:-42184470 | Msa1154640:CDS |
| TTCAAAATGGGAATGAAATG+AGG | 0.473123 | 7_4:+42188945 | None:intergenic |
| ACTTCAACTTCAAAATGAAA+AGG | 0.477963 | 7_4:-42187218 | Msa1154640:CDS |
| CATTAACCCCTGCGCTGCCA+TGG | 0.479415 | 7_4:+42187299 | None:intergenic |
| AGTCATTGAGCATGAGTCTT+CGG | 0.483026 | 7_4:+42184297 | None:intergenic |
| GATGATAATCGTTATAATGC+TGG | 0.490039 | 7_4:-42185789 | Msa1154640:CDS |
| ATCACGATGGAAGACGAATT+GGG | 0.490041 | 7_4:+42188908 | None:intergenic |
| TGTTGAATGTAAGGTAATAT+GGG | 0.490219 | 7_4:-42187761 | Msa1154640:intron |
| TTAGGATGAAAAGAGACTAA+AGG | 0.490600 | 7_4:-42185024 | Msa1154640:intron |
| TAAGACTCGACTGCTTTCAA+TGG | 0.491886 | 7_4:-42185212 | Msa1154640:intron |
| GGATGAAGCTAAACTGCATA+AGG | 0.492251 | 7_4:-42187653 | Msa1154640:CDS |
| TTCAGGCTTCCAAAAGACTT+AGG | 0.494577 | 7_4:+42187436 | None:intergenic |
| AAGGTAATATGGGATGAACT+TGG | 0.495654 | 7_4:-42187751 | Msa1154640:CDS |
| GTGAGCTCCATGGCAGCGCA+GGG | 0.500230 | 7_4:-42187306 | Msa1154640:CDS |
| AGCTGTTATTTCACAACTTG+AGG | 0.500262 | 7_4:-42187401 | Msa1154640:CDS |
| TCATTTGAGGAGCTGAGAGC+TGG | 0.506723 | 7_4:-42184330 | Msa1154640:CDS |
| AATTTCTGCTGTTCCTCAAG+TGG | 0.507816 | 7_4:+42186650 | None:intergenic |
| GGGACAGTCAGAGGAGTGCT+TGG | 0.509151 | 7_4:+42184420 | None:intergenic |
| CAACTTCACTGTTGGAGTTG+TGG | 0.509787 | 7_4:-42186688 | Msa1154640:CDS |
| TTGAAGACTACAACACCTTA+AGG | 0.509937 | 7_4:-42185189 | Msa1154640:CDS |
| GGTTCTTTGAAGAGTAAGAC+TGG | 0.512779 | 7_4:-42184232 | Msa1154640:three_prime_UTR |
| AATGTGTGAATCGTTGCTTA+AGG | 0.515783 | 7_4:-42187938 | Msa1154640:CDS |
| TGCCTTGAAACGAGCTGAGA+AGG | 0.520428 | 7_4:-42185751 | Msa1154640:CDS |
| AAACCCAGCCCAAGTAAAAG+TGG | 0.522757 | 7_4:-42184963 | Msa1154640:CDS |
| TGGAGAATCAGATTCTCATA+AGG | 0.523022 | 7_4:-42187731 | Msa1154640:CDS |
| CCGGAAAGAAATCCTTGAAA+AGG | 0.523128 | 7_4:-42185960 | Msa1154640:CDS |
| ATTTCTGCTGTTCCTCAAGT+GGG | 0.523815 | 7_4:+42186651 | None:intergenic |
| GGCAGGAGAAAGAGAATGAA+AGG | 0.525649 | 7_4:-42185168 | Msa1154640:CDS |
| AAGTTGTGCAACTTCACTGT+TGG | 0.526236 | 7_4:-42186696 | Msa1154640:CDS |
| GAATTCAGTCACCATTAACT+AGG | 0.526574 | 7_4:-42184641 | Msa1154640:CDS |
| GTGTGAAGAATGAAGAAGAA+GGG | 0.534190 | 7_4:+42188967 | None:intergenic |
| AAAGACTTGAGGAATTAAAG+AGG | 0.535585 | 7_4:-42187246 | Msa1154640:CDS |
| AGATACCTGTTTCAGTCGAC+TGG | 0.536604 | 7_4:+42186988 | None:intergenic |
| GGTGTAGCCACAGTCAACAT+AGG | 0.536793 | 7_4:+42184399 | None:intergenic |
| TTGCTATTCAAGAAGAAAGC+TGG | 0.538544 | 7_4:-42185922 | Msa1154640:CDS |
| CCAGCAATAAATGGCTTGGA+AGG | 0.544626 | 7_4:+42184486 | None:intergenic |
| GGCTTTAGATAGGACTGTTG+CGG | 0.547080 | 7_4:+42184599 | None:intergenic |
| AATCGTTATAATGCTGGAAG+AGG | 0.550854 | 7_4:-42185783 | Msa1154640:CDS |
| TGTAGCAGTAGAAGCCATAG+TGG | 0.553088 | 7_4:+42186889 | None:intergenic |
| TCCTTGAAAAGGTTGAGAAG+TGG | 0.557892 | 7_4:-42185949 | Msa1154640:CDS |
| TCAACTTCAAAATGAAAAGG+TGG | 0.557963 | 7_4:-42187215 | Msa1154640:intron |
| TAGCTTTAAAAGTTGCAGCA+TGG | 0.561819 | 7_4:-42185411 | Msa1154640:CDS |
| GACTCTATTGGATGTCCACT+AGG | 0.563280 | 7_4:+42186315 | None:intergenic |
| CCAATAGAGTCAATTGACTC+TGG | 0.566002 | 7_4:-42186303 | Msa1154640:intron |
| GAATGAAAGGCAAAGGCAGA+AGG | 0.567457 | 7_4:-42185155 | Msa1154640:intron |
| CAAAAGAAGAAGCTTTCAGC+CGG | 0.568581 | 7_4:-42185979 | Msa1154640:CDS |
| GAGACTAAAGGGACAACTGT+TGG | 0.570570 | 7_4:-42185012 | Msa1154640:CDS |
| CATTTCAACAGGAATGGTAG+AGG | 0.573016 | 7_4:-42185437 | Msa1154640:intron |
| GGTGTGAAGAATGAAGAAGA+AGG | 0.573777 | 7_4:+42188966 | None:intergenic |
| GCAATAAATGGCTTGGAAGG+AGG | 0.574558 | 7_4:+42184489 | None:intergenic |
| TAATCAACACAAAGACAGCT+AGG | 0.576099 | 7_4:-42184253 | Msa1154640:three_prime_UTR |
| ACACATGTTAGAACAAATTG+AGG | 0.576904 | 7_4:-42186017 | Msa1154640:CDS |
| AGAGGAGTGCTTGGAACGGA+AGG | 0.577859 | 7_4:+42184429 | None:intergenic |
| TGAAGTATTGAGTTTGAGAG+AGG | 0.579528 | 7_4:-42186828 | Msa1154640:CDS |
| GAACAGGAGTCCAAATAACA+TGG | 0.581163 | 7_4:-42184454 | Msa1154640:CDS |
| GTAGCAGTAGAAGCCATAGT+GGG | 0.584589 | 7_4:+42186890 | None:intergenic |
| GTGTAGCCACAGTCAACATA+GGG | 0.589776 | 7_4:+42184400 | None:intergenic |
| TTTAAAAGTTGCAGCATGGG+AGG | 0.591421 | 7_4:-42185407 | Msa1154640:CDS |
| GCAGCATGGGAGGAAGAAAG+AGG | 0.591831 | 7_4:-42185397 | Msa1154640:CDS |
| GTCACATGGATGTTGGATTG+AGG | 0.595309 | 7_4:-42184057 | Msa1154640:three_prime_UTR |
| AGAAAGAGAATGAAAGGCAA+AGG | 0.596526 | 7_4:-42185162 | Msa1154640:CDS |
| TGTTGCGGAAACAGGAGAGA+GGG | 0.596743 | 7_4:+42184614 | None:intergenic |
| GTGCTATGCTTCAGGATCGA+AGG | 0.598848 | 7_4:-42184881 | Msa1154640:CDS |
| AGACTACAACACCTTAAGGC+AGG | 0.613756 | 7_4:-42185185 | Msa1154640:CDS |
| ACTTGTGCAGAGAAAGAAGA+CGG | 0.615750 | 7_4:-42186388 | Msa1154640:CDS |
| AACCCAGCCCAAGTAAAAGT+GGG | 0.619859 | 7_4:-42184962 | Msa1154640:CDS |
| TTTGATGGATACCCCACTTG+AGG | 0.621331 | 7_4:-42186663 | Msa1154640:CDS |
| TATTCAAGAAGAAAGCTGGC+TGG | 0.621664 | 7_4:-42185918 | Msa1154640:CDS |
| CTGTTGCGGAAACAGGAGAG+AGG | 0.631109 | 7_4:+42184613 | None:intergenic |
| TGCGCAAGTTGAAAATGGAA+AGG | 0.631977 | 7_4:-42187375 | Msa1154640:CDS |
| GACTGTCCCTATGTTGACTG+TGG | 0.632997 | 7_4:-42184406 | Msa1154640:CDS |
| TAAAATGCAGAGAATGCAGA+AGG | 0.634554 | 7_4:-42186804 | Msa1154640:intron |
| AAAATTTCCAGTGAGCTCCA+TGG | 0.639503 | 7_4:-42187316 | Msa1154640:CDS |
| TGAAAAGGTTGAGAAGTGGT+TGG | 0.643298 | 7_4:-42185945 | Msa1154640:CDS |
| TCAAGAAGAAAGCTGGCTGG+AGG | 0.643322 | 7_4:-42185915 | Msa1154640:CDS |
| AGTCAGAGGAGTGCTTGGAA+CGG | 0.647966 | 7_4:+42184425 | None:intergenic |
| GTCAACATAGGGACAGTCAG+AGG | 0.653208 | 7_4:+42184411 | None:intergenic |
| TTTCTGCTGTTCCTCAAGTG+GGG | 0.656265 | 7_4:+42186652 | None:intergenic |
| TGAGCTCCATGGCAGCGCAG+GGG | 0.658944 | 7_4:-42187305 | Msa1154640:CDS |
| GTTGCGGAAACAGGAGAGAG+GGG | 0.672480 | 7_4:+42184615 | None:intergenic |
| AACAGGAGTCCAAATAACAT+GGG | 0.675546 | 7_4:-42184453 | Msa1154640:CDS |
| AATGACTCAGTAGTTTGGAG+AGG | 0.678406 | 7_4:-42184281 | Msa1154640:exon |
| CTGGCTGGAGGAGTACAACA+GGG | 0.683295 | 7_4:-42185903 | Msa1154640:intron |
| TAGCAGTAGAAGCCATAGTG+GGG | 0.694274 | 7_4:+42186891 | None:intergenic |
| GAAATCGAACCTGATCACGA+TGG | 0.702427 | 7_4:+42188895 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATATTTTCAAATTATTAT+TGG | - | chr7_4:42184389-42184408 | Msa1154640:CDS | 10.0% |
| !!! | ATTTTTTCTTTTGATTATTT+TGG | - | chr7_4:42187175-42187194 | Msa1154640:intron | 10.0% |
| !! | CATAATACAAAATAAAATAA+AGG | + | chr7_4:42187536-42187555 | None:intergenic | 10.0% |
| !! | AAAAATGTAATACATTATAT+AGG | + | chr7_4:42187693-42187712 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTAAAGACA+TGG | + | chr7_4:42188218-42188237 | None:intergenic | 10.0% |
| !!! | TATCGTCTTTTTTATATTTA+AGG | - | chr7_4:42184484-42184503 | Msa1154640:CDS | 15.0% |
| !!! | AATATTACTTATTTGAGTTT+AGG | - | chr7_4:42184514-42184533 | Msa1154640:CDS | 15.0% |
| !!! | CGTTATTATTATTATTTTTG+CGG | - | chr7_4:42184737-42184756 | Msa1154640:intron | 15.0% |
| !!! | AAATGATGTTTTAACTATTA+AGG | + | chr7_4:42185143-42185162 | None:intergenic | 15.0% |
| !! | AGTTATTATTATCTTTCTTA+GGG | + | chr7_4:42185902-42185921 | None:intergenic | 15.0% |
| !! | AAGTTATTATTATCTTTCTT+AGG | + | chr7_4:42185903-42185922 | None:intergenic | 15.0% |
| !!! | AAATGAAACCAATTTATTTT+AGG | + | chr7_4:42186499-42186518 | None:intergenic | 15.0% |
| !!! | ATTTTTGTGATTAACTAAAT+GGG | - | chr7_4:42186515-42186534 | Msa1154640:intron | 15.0% |
| !!! | CTTGTTTTTGTATAAATTTT+AGG | - | chr7_4:42187952-42187971 | Msa1154640:CDS | 15.0% |
| !!! | TTTTTTAGGGTTTTCAAAAT+GGG | + | chr7_4:42184064-42184083 | None:intergenic | 20.0% |
| !!! | ATTTTTTAGGGTTTTCAAAA+TGG | + | chr7_4:42184065-42184084 | None:intergenic | 20.0% |
| !!! | TATTATTATTATTTTTGCGG+AGG | - | chr7_4:42184740-42184759 | Msa1154640:intron | 20.0% |
| !!! | ATTATTATTATTTTTGCGGA+GGG | - | chr7_4:42184741-42184760 | Msa1154640:intron | 20.0% |
| !!! | ATTTTTGTTTGTTGAATGTA+AGG | - | chr7_4:42185224-42185243 | Msa1154640:intron | 20.0% |
| !! | GTTATTATTATCTTTCTTAG+GGG | + | chr7_4:42185901-42185920 | None:intergenic | 20.0% |
| !!! | TTTTTTACGAAATTCACATT+TGG | + | chr7_4:42185926-42185945 | None:intergenic | 20.0% |
| !!! | CATTTTTGTGATTAACTAAA+TGG | - | chr7_4:42186514-42186533 | Msa1154640:intron | 20.0% |
| !!! | TAGCTCGAAAATATAAATTT+TGG | + | chr7_4:42186867-42186886 | None:intergenic | 20.0% |
| !!! | TTTTGATTATTTTGGTTTGT+AGG | - | chr7_4:42187183-42187202 | Msa1154640:intron | 20.0% |
| !!! | GTTTTATTAAACAAAATTCC+TGG | - | chr7_4:42187271-42187290 | Msa1154640:CDS | 20.0% |
| !! | AATAAAATAAAGGTCAAATG+AGG | + | chr7_4:42187526-42187545 | None:intergenic | 20.0% |
| !!! | TTGTGCAAATTTTATGAATT+AGG | - | chr7_4:42187664-42187683 | Msa1154640:CDS | 20.0% |
| !! | AATGTAATACATTATATAGG+AGG | + | chr7_4:42187690-42187709 | None:intergenic | 20.0% |
| !! | ATTCAACAATCTAACAAAAA+AGG | - | chr7_4:42188148-42188167 | Msa1154640:intron | 20.0% |
| !!! | CATTAAGCATATGTTTTTTT+TGG | - | chr7_4:42188795-42188814 | Msa1154640:intron | 20.0% |
| !! | TGACTTAATCCAAAAAAATT+GGG | - | chr7_4:42188894-42188913 | Msa1154640:intron | 20.0% |
| !!! | TTTGTTCAGATTTTAGCATA+TGG | - | chr7_4:42184163-42184182 | Msa1154640:three_prime_UTR | 25.0% |
| ! | AAATGCATATCAACCTAAAA+TGG | + | chr7_4:42184259-42184278 | None:intergenic | 25.0% |
| ! | AAATATACATTCCTAATCCA+TGG | + | chr7_4:42184636-42184655 | None:intergenic | 25.0% |
| ! | CTTCTTGAGACATTTATTTA+TGG | - | chr7_4:42184661-42184680 | Msa1154640:CDS | 25.0% |
| ! | TAATAACGTGAATCATAGAA+TGG | + | chr7_4:42184725-42184744 | None:intergenic | 25.0% |
| !! | TTATTTCCTTGTTATCATGT+TGG | - | chr7_4:42184957-42184976 | Msa1154640:CDS | 25.0% |
| ! | GAACATTAGATGAAACAAAA+GGG | + | chr7_4:42185121-42185140 | None:intergenic | 25.0% |
| ! | TTGTTGAATGTAAGGTAATA+TGG | - | chr7_4:42185232-42185251 | Msa1154640:intron | 25.0% |
| ! | TGTTGAATGTAAGGTAATAT+GGG | - | chr7_4:42185233-42185252 | Msa1154640:intron | 25.0% |
| ! | GGATTTGTATAAGAAAAAAG+TGG | - | chr7_4:42185320-42185339 | Msa1154640:intron | 25.0% |
| ! | ACTTCAACTTCAAAATGAAA+AGG | - | chr7_4:42185776-42185795 | Msa1154640:CDS | 25.0% |
| ! | AAATAACATAGGCAAAATTC+AGG | + | chr7_4:42185835-42185854 | None:intergenic | 25.0% |
| ! | ACTTCATCAACAAATAACAT+AGG | + | chr7_4:42185846-42185865 | None:intergenic | 25.0% |
| !! | CAGATTTTTCTCTTAAATTG+TGG | - | chr7_4:42185979-42185998 | Msa1154640:CDS | 25.0% |
| !! | TTGTCAATTGATAGTATGTT+AGG | + | chr7_4:42186419-42186438 | None:intergenic | 25.0% |
| ! | CGATTTCACCTAAAATAAAT+TGG | - | chr7_4:42186488-42186507 | Msa1154640:intron | 25.0% |
| ! | ATATTGTGATACAACTAACA+GGG | + | chr7_4:42186743-42186762 | None:intergenic | 25.0% |
| !! | CTTCAAGGATAAATTTTAAG+TGG | - | chr7_4:42186783-42186802 | Msa1154640:intron | 25.0% |
| !!! | CTTCTTTTGTCTTTGAAATT+TGG | + | chr7_4:42187004-42187023 | None:intergenic | 25.0% |
| ! | GAAGAATTATTGTATGTAGA+GGG | + | chr7_4:42187304-42187323 | None:intergenic | 25.0% |
| ! | TGAAGAATTATTGTATGTAG+AGG | + | chr7_4:42187305-42187324 | None:intergenic | 25.0% |
| ! | CTTCAAATATACTACTATCA+AGG | - | chr7_4:42187320-42187339 | Msa1154640:CDS | 25.0% |
| ! | CAAGGTTATGTTATTACAAT+AGG | - | chr7_4:42187338-42187357 | Msa1154640:CDS | 25.0% |
| ! | TTATTACAATAGGCTAGATT+TGG | - | chr7_4:42187348-42187367 | Msa1154640:CDS | 25.0% |
| !! | TTGTATTATGTCATTTCAAC+AGG | - | chr7_4:42187546-42187565 | Msa1154640:intron | 25.0% |
| ! | TGTATGAGGTATAACATATA+AGG | + | chr7_4:42187731-42187750 | None:intergenic | 25.0% |
| !! | AAAAGGCATAAAAATGTATG+AGG | + | chr7_4:42187745-42187764 | None:intergenic | 25.0% |
| !! | TTTTTATGCCTTTTTGTTCA+TGG | - | chr7_4:42187751-42187770 | Msa1154640:CDS | 25.0% |
| ! | GAACAAATAAATGTCAAGAA+GGG | + | chr7_4:42187900-42187919 | None:intergenic | 25.0% |
| ! | TTGAATTGTAGACAATGAAT+TGG | + | chr7_4:42187922-42187941 | None:intergenic | 25.0% |
| !!! | ACAGAAAATTTTCTGGTATT+TGG | + | chr7_4:42188088-42188107 | None:intergenic | 25.0% |
| !! | AATACCAGAAAATTTTCTGT+TGG | - | chr7_4:42188088-42188107 | Msa1154640:intron | 25.0% |
| !!! | TTTTAAAGACATGGTATATG+TGG | + | chr7_4:42188209-42188228 | None:intergenic | 25.0% |
| !!! | TTTTTATGTTGGCTTTAGAT+AGG | + | chr7_4:42188408-42188427 | None:intergenic | 25.0% |
| ! | CCAACATAAAAAATTCTCAA+GGG | - | chr7_4:42188416-42188435 | Msa1154640:intron | 25.0% |
| !! | GCAACATTAAGTATTTTCTT+AGG | + | chr7_4:42188442-42188461 | None:intergenic | 25.0% |
| ! | ATCATTTGAGTATTCATTTG+AGG | - | chr7_4:42188651-42188670 | Msa1154640:intron | 25.0% |
| !! | ATAAGAATGTGCTTTAACTT+TGG | + | chr7_4:42188832-42188851 | None:intergenic | 25.0% |
| ! | CACATTCTTATTACTGTAAT+GGG | - | chr7_4:42188841-42188860 | Msa1154640:intron | 25.0% |
| ! | CTGACTTAATCCAAAAAAAT+TGG | - | chr7_4:42188893-42188912 | Msa1154640:intron | 25.0% |
| TTCAAAATGGGAATGAAATG+AGG | + | chr7_4:42184052-42184071 | None:intergenic | 30.0% | |
| !!! | GACGAATTGGGAATTTTTTA+GGG | + | chr7_4:42184077-42184096 | None:intergenic | 30.0% |
| !!! | AGACGAATTGGGAATTTTTT+AGG | + | chr7_4:42184078-42184097 | None:intergenic | 30.0% |
| AAACACAAAAACACCACAAA+TGG | + | chr7_4:42184146-42184165 | None:intergenic | 30.0% | |
| ! | ACTACTCTCTTATCCATTTT+AGG | - | chr7_4:42184243-42184262 | Msa1154640:three_prime_UTR | 30.0% |
| TGAAAGTCACAATTAAACCT+AGG | + | chr7_4:42184903-42184922 | None:intergenic | 30.0% | |
| GGAACATTAGATGAAACAAA+AGG | + | chr7_4:42185122-42185141 | None:intergenic | 30.0% | |
| ! | TTCTTCTTCTAGAGAATCTT+AGG | - | chr7_4:42185170-42185189 | Msa1154640:CDS | 30.0% |
| ! | TTCTAGAGAATCTTAGGAAA+AGG | - | chr7_4:42185176-42185195 | Msa1154640:CDS | 30.0% |
| TTATGATTTAGCTGATCTCT+TGG | - | chr7_4:42185474-42185493 | Msa1154640:intron | 30.0% | |
| TCAAACTAAGGACATAACAA+TGG | + | chr7_4:42185537-42185556 | None:intergenic | 30.0% | |
| !! | CTTATCTTTTGAAAGACTTG+AGG | - | chr7_4:42185737-42185756 | Msa1154640:CDS | 30.0% |
| AAAGACTTGAGGAATTAAAG+AGG | - | chr7_4:42185748-42185767 | Msa1154640:CDS | 30.0% | |
| TCAACTTCAAAATGAAAAGG+TGG | - | chr7_4:42185779-42185798 | Msa1154640:CDS | 30.0% | |
| ATTCAGGCAACAAATAACAT+AGG | + | chr7_4:42185819-42185838 | None:intergenic | 30.0% | |
| ! | TTTTTCTCTTAAATTGTGGC+AGG | - | chr7_4:42185983-42186002 | Msa1154640:CDS | 30.0% |
| AAACTCTAGCTGAATAAAAC+TGG | + | chr7_4:42186251-42186270 | None:intergenic | 30.0% | |
| GATATTGTGATACAACTAAC+AGG | + | chr7_4:42186744-42186763 | None:intergenic | 30.0% | |
| AATCATTATGACCTATGCAT+TGG | + | chr7_4:42186809-42186828 | None:intergenic | 30.0% | |
| ATGCATAGGTCATAATGATT+TGG | - | chr7_4:42186809-42186828 | Msa1154640:CDS | 30.0% | |
| !! | GTAATTTTTCAAACGGGATA+AGG | + | chr7_4:42186934-42186953 | None:intergenic | 30.0% |
| !! | TGCAGAGTAATTTTTCAAAC+GGG | + | chr7_4:42186940-42186959 | None:intergenic | 30.0% |
| !! | CTGCAGAGTAATTTTTCAAA+CGG | + | chr7_4:42186941-42186960 | None:intergenic | 30.0% |
| ACACATGTTAGAACAAATTG+AGG | - | chr7_4:42186977-42186996 | Msa1154640:CDS | 30.0% | |
| AGCATGACAAAAATCATAGA+TGG | + | chr7_4:42187152-42187171 | None:intergenic | 30.0% | |
| GATGATAATCGTTATAATGC+TGG | - | chr7_4:42187205-42187224 | Msa1154640:intron | 30.0% | |
| TGGAAATGATATGTTGAAGT+TGG | - | chr7_4:42187368-42187387 | Msa1154640:CDS | 30.0% | |
| ! | TTATGTCATTTCAACAGGAA+TGG | - | chr7_4:42187551-42187570 | Msa1154640:intron | 30.0% |
| GGAACAAATAAATGTCAAGA+AGG | + | chr7_4:42187901-42187920 | None:intergenic | 30.0% | |
| TTAGGATGAAAAGAGACTAA+AGG | - | chr7_4:42187970-42187989 | Msa1154640:CDS | 30.0% | |
| TAGGATGAAAAGAGACTAAA+GGG | - | chr7_4:42187971-42187990 | Msa1154640:CDS | 30.0% | |
| ! | TATATGTGGAATGAGTTGAA+TGG | + | chr7_4:42188195-42188214 | None:intergenic | 30.0% |
| TGAATGATCATAAACCTTAG+AGG | + | chr7_4:42188296-42188315 | None:intergenic | 30.0% | |
| GCCAACATAAAAAATTCTCA+AGG | - | chr7_4:42188415-42188434 | Msa1154640:intron | 30.0% | |
| !!! | CCCTTGAGAATTTTTTATGT+TGG | + | chr7_4:42188419-42188438 | None:intergenic | 30.0% |
| CAAAAGAGTGAAATGCTAAT+AGG | - | chr7_4:42188478-42188497 | Msa1154640:intron | 30.0% | |
| GCACATTCTTATTACTGTAA+TGG | - | chr7_4:42188840-42188859 | Msa1154640:intron | 30.0% | |
| CTTAATCCAAAAAAATTGGG+TGG | - | chr7_4:42188897-42188916 | Msa1154640:intron | 30.0% | |
| AGAAAAGCTAAACGAAAAAC+AGG | + | chr7_4:42188967-42188986 | None:intergenic | 30.0% | |
| GTGTGAAGAATGAAGAAGAA+GGG | + | chr7_4:42184030-42184049 | None:intergenic | 35.0% | |
| AATGGCTGAATAGCGAAAAT+GGG | + | chr7_4:42184128-42184147 | None:intergenic | 35.0% | |
| AAATGGCTGAATAGCGAAAA+TGG | + | chr7_4:42184129-42184148 | None:intergenic | 35.0% | |
| ACCTTGAGTAACAATGTCAT+TGG | - | chr7_4:42184567-42184586 | Msa1154640:CDS | 35.0% | |
| ACCAATGACATTGTTACTCA+AGG | + | chr7_4:42184571-42184590 | None:intergenic | 35.0% | |
| CATAAATGTCACCATGGATT+AGG | - | chr7_4:42184622-42184641 | Msa1154640:CDS | 35.0% | |
| !! | TTTCCTAGTCTTTTAAGCCT+AGG | - | chr7_4:42184883-42184902 | Msa1154640:CDS | 35.0% |
| AAACCTAGGCTTAAAAGACT+AGG | + | chr7_4:42184889-42184908 | None:intergenic | 35.0% | |
| AAACAGCCAACATGATAACA+AGG | + | chr7_4:42184966-42184985 | None:intergenic | 35.0% | |
| ! | GCACAAAGATTTTCGATGTT+CGG | - | chr7_4:42185000-42185019 | Msa1154640:CDS | 35.0% |
| AATGTGTGAATCGTTGCTTA+AGG | - | chr7_4:42185056-42185075 | Msa1154640:intron | 35.0% | |
| TTCACAACATAGACAACAGA+GGG | + | chr7_4:42185095-42185114 | None:intergenic | 35.0% | |
| TTTCACAACATAGACAACAG+AGG | + | chr7_4:42185096-42185115 | None:intergenic | 35.0% | |
| AAGGTAATATGGGATGAACT+TGG | - | chr7_4:42185243-42185262 | Msa1154640:intron | 35.0% | |
| TGGAGAATCAGATTCTCATA+AGG | - | chr7_4:42185263-42185282 | Msa1154640:intron | 35.0% | |
| CGAAATAGAACAAATGTGTC+TGG | - | chr7_4:42185299-42185318 | Msa1154640:intron | 35.0% | |
| AAAGACTTAGGCTCAAACTA+AGG | + | chr7_4:42185549-42185568 | None:intergenic | 35.0% | |
| ! | TAGTTTGAGCCTAAGTCTTT+TGG | - | chr7_4:42185549-42185568 | Msa1154640:intron | 35.0% |
| !! | AGCTGTTATTTCACAACTTG+AGG | - | chr7_4:42185593-42185612 | Msa1154640:intron | 35.0% |
| TCTTTCTTAGGGGAAAATCA+CGG | + | chr7_4:42185891-42185910 | None:intergenic | 35.0% | |
| !! | TGAAGTATTGAGTTTGAGAG+AGG | - | chr7_4:42186166-42186185 | Msa1154640:intron | 35.0% |
| TAAAATGCAGAGAATGCAGA+AGG | - | chr7_4:42186190-42186209 | Msa1154640:intron | 35.0% | |
| ! | TTCCAAAGCAGCAATTTTAC+TGG | + | chr7_4:42186381-42186400 | None:intergenic | 35.0% |
| !! | TTGTTTCTATCCCATTGTCT+TGG | - | chr7_4:42186455-42186474 | Msa1154640:intron | 35.0% |
| AAGAACAGAACCAAGACAAT+GGG | + | chr7_4:42186468-42186487 | None:intergenic | 35.0% | |
| ! | CTGCACAAGTTCTTTCATTT+TGG | + | chr7_4:42186596-42186615 | None:intergenic | 35.0% |
| ! | CTACAAACAGTTTTTCCTAG+TGG | - | chr7_4:42186664-42186683 | Msa1154640:CDS | 35.0% |
| !! | TACTGACTTGAAGTTCTTCA+AGG | - | chr7_4:42186768-42186787 | Msa1154640:intron | 35.0% |
| !! | ATTTTAAGTGGCCAATGCAT+AGG | - | chr7_4:42186795-42186814 | Msa1154640:intron | 35.0% |
| AGGAGATATAATGAGGTTCA+TGG | + | chr7_4:42186914-42186933 | None:intergenic | 35.0% | |
| !! | CCTTTTCAAGGATTTCTTTC+CGG | + | chr7_4:42187037-42187056 | None:intergenic | 35.0% |
| ! | TTGCTATTCAAGAAGAAAGC+TGG | - | chr7_4:42187072-42187091 | Msa1154640:intron | 35.0% |
| AATCGTTATAATGCTGGAAG+AGG | - | chr7_4:42187211-42187230 | Msa1154640:intron | 35.0% | |
| !! | TAGCTTTAAAAGTTGCAGCA+TGG | - | chr7_4:42187583-42187602 | Msa1154640:CDS | 35.0% |
| !! | AGCTTTAAAAGTTGCAGCAT+GGG | - | chr7_4:42187584-42187603 | Msa1154640:CDS | 35.0% |
| ! | GGATTAGAGTTTTCTTACGA+TGG | - | chr7_4:42187618-42187637 | Msa1154640:CDS | 35.0% |
| TTGAAGACTACAACACCTTA+AGG | - | chr7_4:42187805-42187824 | Msa1154640:intron | 35.0% | |
| AGAAAGAGAATGAAAGGCAA+AGG | - | chr7_4:42187832-42187851 | Msa1154640:intron | 35.0% | |
| GCAACTAAATGTCTAGTAGA+TGG | - | chr7_4:42187865-42187884 | Msa1154640:intron | 35.0% | |
| !! | CAGAGCATGAAACACTTTTT+GGG | - | chr7_4:42188005-42188024 | Msa1154640:five_prime_UTR | 35.0% |
| !! | CCTTTATCCCACTTTTACTT+GGG | + | chr7_4:42188042-42188061 | None:intergenic | 35.0% |
| ! | ACCAGAAAATTTTCTGTTGG+TGG | - | chr7_4:42188091-42188110 | Msa1154640:intron | 35.0% |
| ! | ACCACCAACAGAAAATTTTC+TGG | + | chr7_4:42188095-42188114 | None:intergenic | 35.0% |
| ! | TTGTCATTTGTGACTTATCC+AGG | - | chr7_4:42188262-42188281 | Msa1154640:intron | 35.0% |
| ATTTGTGACTTATCCAGGAA+AGG | - | chr7_4:42188267-42188286 | Msa1154640:intron | 35.0% | |
| TTTGTGACTTATCCAGGAAA+GGG | - | chr7_4:42188268-42188287 | Msa1154640:intron | 35.0% | |
| GAATTCAGTCACCATTAACT+AGG | - | chr7_4:42188353-42188372 | Msa1154640:intron | 35.0% | |
| ! | TTAGCATTTCACTCTTTTGC+AGG | + | chr7_4:42188477-42188496 | None:intergenic | 35.0% |
| TCTTCATCTCCAGCAATAAA+TGG | + | chr7_4:42188520-42188539 | None:intergenic | 35.0% | |
| AACAGGAGTCCAAATAACAT+GGG | - | chr7_4:42188541-42188560 | Msa1154640:intron | 35.0% | |
| TAATCAACACAAAGACAGCT+AGG | - | chr7_4:42188741-42188760 | Msa1154640:intron | 35.0% | |
| ! | TTTGAAGAGTAAGACTGGTT+TGG | - | chr7_4:42188767-42188786 | Msa1154640:intron | 35.0% |
| ATCCAAAAAAATTGGGTGGA+AGG | - | chr7_4:42188901-42188920 | Msa1154640:intron | 35.0% | |
| !!! | ATCCTTCCACCCAATTTTTT+TGG | + | chr7_4:42188906-42188925 | None:intergenic | 35.0% |
| AAAAAAATTGGGTGGAAGGA+TGG | - | chr7_4:42188905-42188924 | Msa1154640:five_prime_UTR | 35.0% | |
| GGTGTGAAGAATGAAGAAGA+AGG | + | chr7_4:42184031-42184050 | None:intergenic | 40.0% | |
| ATCACGATGGAAGACGAATT+GGG | + | chr7_4:42184089-42184108 | None:intergenic | 40.0% | |
| TTTCGCTATTCAGCCATTTG+TGG | - | chr7_4:42184130-42184149 | Msa1154640:three_prime_UTR | 40.0% | |
| TGTCCATGTCTGTGTTTCAT+TGG | - | chr7_4:42184456-42184475 | Msa1154640:CDS | 40.0% | |
| GTCCATGTCTGTGTTTCATT+GGG | - | chr7_4:42184457-42184476 | Msa1154640:CDS | 40.0% | |
| TTCCCAATGAAACACAGACA+TGG | + | chr7_4:42184462-42184481 | None:intergenic | 40.0% | |
| GTAGGTCATAAATGTCACCA+TGG | - | chr7_4:42184616-42184635 | Msa1154640:CDS | 40.0% | |
| !!! | TATTATTTTTGCGGAGGGCA+AGG | - | chr7_4:42184746-42184765 | Msa1154640:intron | 40.0% |
| !!! | ATTATTTTTGCGGAGGGCAA+GGG | - | chr7_4:42184747-42184766 | Msa1154640:intron | 40.0% |
| ! | AGATTTTCGATGTTCGGCAA+AGG | - | chr7_4:42185006-42185025 | Msa1154640:CDS | 40.0% |
| ATCGTTGCTTAAGGAACTTC+AGG | - | chr7_4:42185065-42185084 | Msa1154640:intron | 40.0% | |
| GGATGAAGCTAAACTGCATA+AGG | - | chr7_4:42185341-42185360 | Msa1154640:intron | 40.0% | |
| GCTTGCATTTGTTCTGCAAT+TGG | - | chr7_4:42185405-42185424 | Msa1154640:CDS | 40.0% | |
| ! | TCACCACTTGTAAGTCTTGT+TGG | - | chr7_4:42185435-42185454 | Msa1154640:intron | 40.0% |
| ATGCCAACAAGACTTACAAG+TGG | + | chr7_4:42185441-42185460 | None:intergenic | 40.0% | |
| TTCAGGCTTCCAAAAGACTT+AGG | + | chr7_4:42185561-42185580 | None:intergenic | 40.0% | |
| ! | TGCGCAAGTTGAAAATGGAA+AGG | - | chr7_4:42185619-42185638 | Msa1154640:intron | 40.0% |
| GGAAAGGAAGAAGCAGTTTA+TGG | - | chr7_4:42185635-42185654 | Msa1154640:intron | 40.0% | |
| AAAATTTCCAGTGAGCTCCA+TGG | - | chr7_4:42185678-42185697 | Msa1154640:intron | 40.0% | |
| CTTTCTTAGGGGAAAATCAC+GGG | + | chr7_4:42185890-42185909 | None:intergenic | 40.0% | |
| GAAACAGGTATCTGATCAAC+TGG | - | chr7_4:42186016-42186035 | Msa1154640:CDS | 40.0% | |
| ! | TTGTGAGATTTTCCCCACTA+TGG | - | chr7_4:42186091-42186110 | Msa1154640:intron | 40.0% |
| AAGTTGTGCAACTTCACTGT+TGG | - | chr7_4:42186298-42186317 | Msa1154640:intron | 40.0% | |
| GTTGGAGTTGTGGAATTTGA+TGG | - | chr7_4:42186316-42186335 | Msa1154640:CDS | 40.0% | |
| ATTTCTGCTGTTCCTCAAGT+GGG | + | chr7_4:42186346-42186365 | None:intergenic | 40.0% | |
| AATTTCTGCTGTTCCTCAAG+TGG | + | chr7_4:42186347-42186366 | None:intergenic | 40.0% | |
| ! | GACCAGTAAAATTGCTGCTT+TGG | - | chr7_4:42186376-42186395 | Msa1154640:CDS | 40.0% |
| GAAGAACAGAACCAAGACAA+TGG | + | chr7_4:42186469-42186488 | None:intergenic | 40.0% | |
| AGGTTGAGAGAGAAGTTAGA+AGG | - | chr7_4:42186551-42186570 | Msa1154640:intron | 40.0% | |
| ACTTGTGCAGAGAAAGAAGA+CGG | - | chr7_4:42186606-42186625 | Msa1154640:CDS | 40.0% | |
| ! | CCAGAGTCAATTGACTCTAT+TGG | + | chr7_4:42186694-42186713 | None:intergenic | 40.0% |
| ! | CCAATAGAGTCAATTGACTC+TGG | - | chr7_4:42186691-42186710 | Msa1154640:CDS | 40.0% |
| CGGGATAAGGAGATATAATG+AGG | + | chr7_4:42186921-42186940 | None:intergenic | 40.0% | |
| CAAAAGAAGAAGCTTTCAGC+CGG | - | chr7_4:42187015-42187034 | Msa1154640:intron | 40.0% | |
| CCGGAAAGAAATCCTTGAAA+AGG | - | chr7_4:42187034-42187053 | Msa1154640:intron | 40.0% | |
| TCCTTGAAAAGGTTGAGAAG+TGG | - | chr7_4:42187045-42187064 | Msa1154640:intron | 40.0% | |
| ! | ACCACTTCTCAACCTTTTCA+AGG | + | chr7_4:42187049-42187068 | None:intergenic | 40.0% |
| TGAAAAGGTTGAGAAGTGGT+TGG | - | chr7_4:42187049-42187068 | Msa1154640:intron | 40.0% | |
| TATTCAAGAAGAAAGCTGGC+TGG | - | chr7_4:42187076-42187095 | Msa1154640:intron | 40.0% | |
| TATGTAGAGGGATATTCACC+AGG | + | chr7_4:42187292-42187311 | None:intergenic | 40.0% | |
| CATTTCAACAGGAATGGTAG+AGG | - | chr7_4:42187557-42187576 | Msa1154640:intron | 40.0% | |
| TTTAAAAGTTGCAGCATGGG+AGG | - | chr7_4:42187587-42187606 | Msa1154640:CDS | 40.0% | |
| ACGCACATCCATGAACAAAA+AGG | + | chr7_4:42187762-42187781 | None:intergenic | 40.0% | |
| TAAGACTCGACTGCTTTCAA+TGG | - | chr7_4:42187782-42187801 | Msa1154640:intron | 40.0% | |
| ATTCTCTTTCTCCTGCCTTA+AGG | + | chr7_4:42187823-42187842 | None:intergenic | 40.0% | |
| ! | GCAGAGCATGAAACACTTTT+TGG | - | chr7_4:42188004-42188023 | Msa1154640:five_prime_UTR | 40.0% |
| CCCAAGTAAAAGTGGGATAA+AGG | - | chr7_4:42188039-42188058 | Msa1154640:intron | 40.0% | |
| !! | GCCTTTATCCCACTTTTACT+TGG | + | chr7_4:42188043-42188062 | None:intergenic | 40.0% |
| ATTCTCTTTGCTGCACTTTG+TGG | + | chr7_4:42188331-42188350 | None:intergenic | 40.0% | |
| CAAAGTGCAGCAAAGAGAAT+TGG | - | chr7_4:42188331-42188350 | Msa1154640:intron | 40.0% | |
| ! | ATTTCACTCTTTTGCAGGAC+TGG | + | chr7_4:42188472-42188491 | None:intergenic | 40.0% |
| ATCTCCAGCAATAAATGGCT+TGG | + | chr7_4:42188515-42188534 | None:intergenic | 40.0% | |
| GAACAGGAGTCCAAATAACA+TGG | - | chr7_4:42188540-42188559 | Msa1154640:intron | 40.0% | |
| AGTCATTGAGCATGAGTCTT+CGG | + | chr7_4:42188700-42188719 | None:intergenic | 40.0% | |
| TGCTCAATGACTCAGTAGTT+TGG | - | chr7_4:42188708-42188727 | Msa1154640:intron | 40.0% | |
| AATGACTCAGTAGTTTGGAG+AGG | - | chr7_4:42188713-42188732 | Msa1154640:intron | 40.0% | |
| ! | GGTTCTTTGAAGAGTAAGAC+TGG | - | chr7_4:42188762-42188781 | Msa1154640:intron | 40.0% |
| GATCACGATGGAAGACGAAT+TGG | + | chr7_4:42184090-42184109 | None:intergenic | 45.0% | |
| ATTCGTCTTCCATCGTGATC+AGG | - | chr7_4:42184090-42184109 | Msa1154640:three_prime_UTR | 45.0% | |
| GAAATCGAACCTGATCACGA+TGG | + | chr7_4:42184102-42184121 | None:intergenic | 45.0% | |
| CTTGACAAGCAGTGACAAGT+AGG | - | chr7_4:42184598-42184617 | Msa1154640:CDS | 45.0% | |
| !!! | TTATTTTTGCGGAGGGCAAG+GGG | - | chr7_4:42184748-42184767 | Msa1154640:intron | 45.0% |
| CAGCTTCACGTTCTTTCTTC+AGG | + | chr7_4:42185578-42185597 | None:intergenic | 45.0% | |
| ! | GGAGATGCGCAAGTTGAAAA+TGG | - | chr7_4:42185614-42185633 | Msa1154640:intron | 45.0% |
| TTAGGGGAAAATCACGGGTT+TGG | + | chr7_4:42185885-42185904 | None:intergenic | 45.0% | |
| AGATACCTGTTTCAGTCGAC+TGG | + | chr7_4:42186009-42186028 | None:intergenic | 45.0% | |
| CACTCTTAGTTCGTTGTGCT+CGG | - | chr7_4:42186040-42186059 | Msa1154640:intron | 45.0% | |
| TAGCAGTAGAAGCCATAGTG+GGG | + | chr7_4:42186106-42186125 | None:intergenic | 45.0% | |
| GTAGCAGTAGAAGCCATAGT+GGG | + | chr7_4:42186107-42186126 | None:intergenic | 45.0% | |
| TGTAGCAGTAGAAGCCATAG+TGG | + | chr7_4:42186108-42186127 | None:intergenic | 45.0% | |
| CAACTTCACTGTTGGAGTTG+TGG | - | chr7_4:42186306-42186325 | Msa1154640:CDS | 45.0% | |
| ! | TTTGATGGATACCCCACTTG+AGG | - | chr7_4:42186331-42186350 | Msa1154640:CDS | 45.0% |
| TTTCTGCTGTTCCTCAAGTG+GGG | + | chr7_4:42186345-42186364 | None:intergenic | 45.0% | |
| !! | AAATGGGCTATTCTCCTTGC+AGG | - | chr7_4:42186531-42186550 | Msa1154640:intron | 45.0% |
| AACTTCTCTCTCAACCTGCA+AGG | + | chr7_4:42186548-42186567 | None:intergenic | 45.0% | |
| GAGAAAGAAGACGGAGTTAG+AGG | - | chr7_4:42186615-42186634 | Msa1154640:CDS | 45.0% | |
| GACTCTATTGGATGTCCACT+AGG | + | chr7_4:42186682-42186701 | None:intergenic | 45.0% | |
| AGACTACAACACCTTAAGGC+AGG | - | chr7_4:42187809-42187828 | Msa1154640:intron | 45.0% | |
| GGCAGGAGAAAGAGAATGAA+AGG | - | chr7_4:42187826-42187845 | Msa1154640:intron | 45.0% | |
| GAATGAAAGGCAAAGGCAGA+AGG | - | chr7_4:42187839-42187858 | Msa1154640:intron | 45.0% | |
| GAGACTAAAGGGACAACTGT+TGG | - | chr7_4:42187982-42188001 | Msa1154640:CDS | 45.0% | |
| AAACCCAGCCCAAGTAAAAG+TGG | - | chr7_4:42188031-42188050 | Msa1154640:intron | 45.0% | |
| AACCCAGCCCAAGTAAAAGT+GGG | - | chr7_4:42188032-42188051 | Msa1154640:intron | 45.0% | |
| !! | ATCCCACTTTTACTTGGGCT+GGG | + | chr7_4:42188037-42188056 | None:intergenic | 45.0% |
| !! | TATCCCACTTTTACTTGGGC+TGG | + | chr7_4:42188038-42188057 | None:intergenic | 45.0% |
| AAGGCTCCTAGATGTTCAAC+AGG | - | chr7_4:42188058-42188077 | Msa1154640:intron | 45.0% | |
| GGAACTCCTGTTGAACATCT+AGG | + | chr7_4:42188067-42188086 | None:intergenic | 45.0% | |
| AGTTGAATGGCATGCTGTCT+TGG | + | chr7_4:42188182-42188201 | None:intergenic | 45.0% | |
| GAGAGGGGTTTCCTAGTTAA+TGG | + | chr7_4:42188367-42188386 | None:intergenic | 45.0% | |
| !! | GGCTTTAGATAGGACTGTTG+CGG | + | chr7_4:42188398-42188417 | None:intergenic | 45.0% |
| ! | GCAATAAATGGCTTGGAAGG+AGG | + | chr7_4:42188508-42188527 | None:intergenic | 45.0% |
| ! | CCAGCAATAAATGGCTTGGA+AGG | + | chr7_4:42188511-42188530 | None:intergenic | 45.0% |
| CCTTCCAAGCCATTTATTGC+TGG | - | chr7_4:42188508-42188527 | Msa1154640:intron | 45.0% | |
| TTGCTGGAGATGAAGAGAAC+AGG | - | chr7_4:42188524-42188543 | Msa1154640:intron | 45.0% | |
| ACGGAAGGTCCCATGTTATT+TGG | + | chr7_4:42188553-42188572 | None:intergenic | 45.0% | |
| GTGTAGCCACAGTCAACATA+GGG | + | chr7_4:42188597-42188616 | None:intergenic | 45.0% | |
| ! | GGTGGAAGGATGGTTCTTTT+GGG | - | chr7_4:42188915-42188934 | Msa1154640:five_prime_UTR | 45.0% |
| !! | GATGGTTCTTTTGGGTCACA+TGG | - | chr7_4:42188923-42188942 | Msa1154640:five_prime_UTR | 45.0% |
| !! | CTTTTGGGTCACATGGATGT+TGG | - | chr7_4:42188930-42188949 | Msa1154640:five_prime_UTR | 45.0% |
| GTCACATGGATGTTGGATTG+AGG | - | chr7_4:42188937-42188956 | Msa1154640:five_prime_UTR | 45.0% | |
| !! | TTAAAAAAAAAAAAAATCTA+AGG | - | chr7_4:42188223-42188242 | Msa1154640:intron | 5.0% |
| TGATCTCTTGGTCAGAGCTG+AGG | - | chr7_4:42185486-42185505 | Msa1154640:intron | 50.0% | |
| AGTTCGTTGTGCTCGGTTCT+CGG | - | chr7_4:42186047-42186066 | Msa1154640:intron | 50.0% | |
| TCAAGAAGAAAGCTGGCTGG+AGG | - | chr7_4:42187079-42187098 | Msa1154640:intron | 50.0% | |
| TGCCTTGAAACGAGCTGAGA+AGG | - | chr7_4:42187243-42187262 | Msa1154640:CDS | 50.0% | |
| !! | TGTTGGTGGTGCTATGCTTC+AGG | - | chr7_4:42188105-42188124 | Msa1154640:intron | 50.0% |
| GTGCTATGCTTCAGGATCGA+AGG | - | chr7_4:42188113-42188132 | Msa1154640:intron | 50.0% | |
| !! | TCCAGGAAAGGGTACCTCTA+AGG | - | chr7_4:42188279-42188298 | Msa1154640:intron | 50.0% |
| !! | ACCTTAGAGGTACCCTTTCC+TGG | + | chr7_4:42188283-42188302 | None:intergenic | 50.0% |
| TGTTGCGGAAACAGGAGAGA+GGG | + | chr7_4:42188383-42188402 | None:intergenic | 50.0% | |
| GATAGGACTGTTGCGGAAAC+AGG | + | chr7_4:42188391-42188410 | None:intergenic | 50.0% | |
| !! | AGTCAGAGGAGTGCTTGGAA+CGG | + | chr7_4:42188572-42188591 | None:intergenic | 50.0% |
| GTCAACATAGGGACAGTCAG+AGG | + | chr7_4:42188586-42188605 | None:intergenic | 50.0% | |
| ! | GACTGTCCCTATGTTGACTG+TGG | - | chr7_4:42188588-42188607 | Msa1154640:intron | 50.0% |
| GGTGTAGCCACAGTCAACAT+AGG | + | chr7_4:42188598-42188617 | None:intergenic | 50.0% | |
| GGCTACACCAGACACTTCTA+AGG | - | chr7_4:42188609-42188628 | Msa1154640:intron | 50.0% | |
| TCATTTGAGGAGCTGAGAGC+TGG | - | chr7_4:42188664-42188683 | Msa1154640:intron | 50.0% | |
| ! | GGGTGGAAGGATGGTTCTTT+TGG | - | chr7_4:42188914-42188933 | Msa1154640:five_prime_UTR | 50.0% |
| TCTCTTGGTCAGAGCTGAGG+CGG | - | chr7_4:42185489-42185508 | Msa1154640:intron | 55.0% | |
| ! | CTGGCTGGAGGAGTACAACA+GGG | - | chr7_4:42187091-42187110 | Msa1154640:intron | 55.0% |
| ! | TGGAGGAGTACAACAGGGTG+AGG | - | chr7_4:42187096-42187115 | Msa1154640:intron | 55.0% |
| CGCCTTCTCAGCTCGTTTCA+AGG | + | chr7_4:42187248-42187267 | None:intergenic | 55.0% | |
| GCAGCATGGGAGGAAGAAAG+AGG | - | chr7_4:42187597-42187616 | Msa1154640:CDS | 55.0% | |
| GTTGCGGAAACAGGAGAGAG+GGG | + | chr7_4:42188382-42188401 | None:intergenic | 55.0% | |
| CTGTTGCGGAAACAGGAGAG+AGG | + | chr7_4:42188384-42188403 | None:intergenic | 55.0% | |
| !! | AGAGGAGTGCTTGGAACGGA+AGG | + | chr7_4:42188568-42188587 | None:intergenic | 55.0% |
| !! | GCAGCAGCCTTAGAAGTGTC+TGG | + | chr7_4:42188619-42188638 | None:intergenic | 55.0% |
| CATTAACCCCTGCGCTGCCA+TGG | + | chr7_4:42185698-42185717 | None:intergenic | 60.0% | |
| GCAGGCCAGTCGACTGAAAC+AGG | - | chr7_4:42186001-42186020 | Msa1154640:CDS | 60.0% | |
| GTTGTGCTCGGTTCTCGGTC+TGG | - | chr7_4:42186052-42186071 | Msa1154640:intron | 60.0% | |
| ! | GCTGGCTGGAGGAGTACAAC+AGG | - | chr7_4:42187090-42187109 | Msa1154640:intron | 60.0% |
| !! | GGGACAGTCAGAGGAGTGCT+TGG | + | chr7_4:42188577-42188596 | None:intergenic | 60.0% |
| TGCGCTGCCATGGAGCTCAC+TGG | + | chr7_4:42185688-42185707 | None:intergenic | 65.0% | |
| AGTGAGCTCCATGGCAGCGC+AGG | - | chr7_4:42185687-42185706 | Msa1154640:intron | 65.0% | |
| GTGAGCTCCATGGCAGCGCA+GGG | - | chr7_4:42185688-42185707 | Msa1154640:intron | 65.0% | |
| TGAGCTCCATGGCAGCGCAG+GGG | - | chr7_4:42185689-42185708 | Msa1154640:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 42184022 | 42188994 | 42184022 | ID=Msa1154640;Name=Msa1154640 |
| chr7_4 | mRNA | 42184022 | 42188994 | 42184022 | ID=Msa1154640-mRNA-1;Parent=Msa1154640;Name=Msa1154640-mRNA-1;_AED=0.15;_eAED=0.15;_QI=122|0.91|0.92|1|0.91|0.84|13|277|686 |
| chr7_4 | exon | 42184022 | 42184732 | 42184022 | ID=Msa1154640-mRNA-1:exon:10368;Parent=Msa1154640-mRNA-1 |
| chr7_4 | exon | 42184847 | 42185042 | 42184847 | ID=Msa1154640-mRNA-1:exon:10367;Parent=Msa1154640-mRNA-1 |
| chr7_4 | exon | 42185156 | 42185230 | 42185156 | ID=Msa1154640-mRNA-1:exon:10366;Parent=Msa1154640-mRNA-1 |
| chr7_4 | exon | 42185375 | 42185448 | 42185375 | ID=Msa1154640-mRNA-1:exon:10365;Parent=Msa1154640-mRNA-1 |
| chr7_4 | exon | 42185724 | 42185811 | 42185724 | ID=Msa1154640-mRNA-1:exon:10364;Parent=Msa1154640-mRNA-1 |
| chr7_4 | exon | 42185904 | 42186055 | 42185904 | ID=Msa1154640-mRNA-1:exon:10363;Parent=Msa1154640-mRNA-1 |
| chr7_4 | exon | 42186304 | 42186463 | 42186304 | ID=Msa1154640-mRNA-1:exon:10362;Parent=Msa1154640-mRNA-1 |
| chr7_4 | exon | 42186568 | 42186723 | 42186568 | ID=Msa1154640-mRNA-1:exon:10361;Parent=Msa1154640-mRNA-1 |
| chr7_4 | exon | 42186805 | 42187011 | 42186805 | ID=Msa1154640-mRNA-1:exon:10360;Parent=Msa1154640-mRNA-1 |
| chr7_4 | exon | 42187216 | 42187464 | 42187216 | ID=Msa1154640-mRNA-1:exon:10359;Parent=Msa1154640-mRNA-1 |
| chr7_4 | exon | 42187573 | 42187770 | 42187573 | ID=Msa1154640-mRNA-1:exon:10358;Parent=Msa1154640-mRNA-1 |
| chr7_4 | exon | 42187930 | 42188033 | 42187930 | ID=Msa1154640-mRNA-1:exon:10357;Parent=Msa1154640-mRNA-1 |
| chr7_4 | exon | 42188905 | 42188994 | 42188905 | ID=Msa1154640-mRNA-1:exon:10356;Parent=Msa1154640-mRNA-1 |
| chr7_4 | five_prime_UTR | 42188905 | 42188994 | 42188905 | ID=Msa1154640-mRNA-1:five_prime_utr;Parent=Msa1154640-mRNA-1 |
| chr7_4 | five_prime_UTR | 42188002 | 42188033 | 42188002 | ID=Msa1154640-mRNA-1:five_prime_utr;Parent=Msa1154640-mRNA-1 |
| chr7_4 | CDS | 42187930 | 42188001 | 42187930 | ID=Msa1154640-mRNA-1:cds;Parent=Msa1154640-mRNA-1 |
| chr7_4 | CDS | 42187573 | 42187770 | 42187573 | ID=Msa1154640-mRNA-1:cds;Parent=Msa1154640-mRNA-1 |
| chr7_4 | CDS | 42187216 | 42187464 | 42187216 | ID=Msa1154640-mRNA-1:cds;Parent=Msa1154640-mRNA-1 |
| chr7_4 | CDS | 42186805 | 42187011 | 42186805 | ID=Msa1154640-mRNA-1:cds;Parent=Msa1154640-mRNA-1 |
| chr7_4 | CDS | 42186568 | 42186723 | 42186568 | ID=Msa1154640-mRNA-1:cds;Parent=Msa1154640-mRNA-1 |
| chr7_4 | CDS | 42186304 | 42186463 | 42186304 | ID=Msa1154640-mRNA-1:cds;Parent=Msa1154640-mRNA-1 |
| chr7_4 | CDS | 42185904 | 42186055 | 42185904 | ID=Msa1154640-mRNA-1:cds;Parent=Msa1154640-mRNA-1 |
| chr7_4 | CDS | 42185724 | 42185811 | 42185724 | ID=Msa1154640-mRNA-1:cds;Parent=Msa1154640-mRNA-1 |
| chr7_4 | CDS | 42185375 | 42185448 | 42185375 | ID=Msa1154640-mRNA-1:cds;Parent=Msa1154640-mRNA-1 |
| chr7_4 | CDS | 42185156 | 42185230 | 42185156 | ID=Msa1154640-mRNA-1:cds;Parent=Msa1154640-mRNA-1 |
| chr7_4 | CDS | 42184847 | 42185042 | 42184847 | ID=Msa1154640-mRNA-1:cds;Parent=Msa1154640-mRNA-1 |
| chr7_4 | CDS | 42184299 | 42184732 | 42184299 | ID=Msa1154640-mRNA-1:cds;Parent=Msa1154640-mRNA-1 |
| chr7_4 | three_prime_UTR | 42184022 | 42184298 | 42184022 | ID=Msa1154640-mRNA-1:three_prime_utr;Parent=Msa1154640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
