AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0833650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833650 MtrunA17_Chr5g0398891 99.062 320 2 1 1 319 1 320 0.0 640
Msa0833650 MtrunA17_Chr4g0048121 50.508 295 129 4 1 295 1 278 7.45e-101 298
Msa0833650 MtrunA17_Chr2g0281201 53.279 244 113 1 73 316 10 252 8.44e-97 286
Msa0833650 MtrunA17_Chr1g0177121 42.953 298 154 3 1 295 1 285 1.63e-86 262
Msa0833650 MtrunA17_Chr1g0177131 48.988 247 125 1 49 295 44 289 2.35e-84 258
Msa0833650 MtrunA17_Chr7g0267551 46.122 245 131 1 53 297 31 274 8.69e-78 239
Msa0833650 MtrunA17_Chr5g0404401 46.128 297 136 6 1 294 1 276 3.39e-77 238
Msa0833650 MtrunA17_Chr2g0322801 44.781 297 148 5 1 295 1 283 1.27e-75 234
Msa0833650 MtrunA17_Chr6g0461261 41.077 297 158 3 1 297 1 280 7.67e-73 227
Msa0833650 MtrunA17_Chr8g0370611 41.221 131 64 3 1 129 1 120 5.92e-20 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833650 AT1G08560.1 65.312 320 100 5 1 319 1 310 6.53e-133 380
Msa0833650 AT1G61290.1 48.562 313 139 4 1 311 1 293 7.25e-104 306
Msa0833650 AT1G61290.2 48.562 313 139 4 1 311 1 293 7.25e-104 306
Msa0833650 AT4G03330.1 47.937 315 149 3 1 315 1 300 1.38e-94 283
Msa0833650 AT1G11250.1 47.458 295 132 4 1 295 1 272 9.90e-92 275
Msa0833650 AT3G11820.1 50.575 261 128 1 35 295 29 288 2.95e-88 268
Msa0833650 AT3G11820.2 52.632 247 116 1 49 295 12 257 7.62e-88 266
Msa0833650 AT3G52400.1 43.624 298 158 3 1 297 1 289 5.05e-80 247
Msa0833650 AT2G18260.2 38.730 315 182 4 1 315 1 304 1.02e-70 222
Msa0833650 AT2G18260.1 38.730 315 182 4 1 315 1 304 1.02e-70 222
Msa0833650 AT3G03800.2 43.019 265 150 1 53 317 38 301 5.76e-68 215
Msa0833650 AT3G03800.1 43.019 265 150 1 53 317 38 301 5.76e-68 215
Msa0833650 AT5G08080.1 43.729 295 149 4 1 295 1 278 2.00e-66 211
Msa0833650 AT5G08080.4 43.729 295 149 4 1 295 1 278 2.00e-66 211
Msa0833650 AT5G08080.3 43.434 297 158 6 1 295 1 289 8.16e-65 207
Msa0833650 AT5G08080.5 39.171 217 115 4 1 217 1 200 1.25e-31 118
Msa0833650 AT5G08080.2 39.171 217 115 4 1 217 1 200 1.25e-31 118

Find 61 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGATTGAGAAGAGTTTAT+TGG 0.159342 5_4:-6750818 Msa0833650:CDS
GGAGATGATGAAAGTTTCTT+AGG 0.183110 5_4:-6750919 Msa0833650:CDS
GGAGCTTATGATGGAGTTTC+AGG 0.211805 5_4:-6751302 Msa0833650:intron
CTTTGATCAATTGGGTATAA+AGG 0.240284 5_4:+6751786 None:intergenic
ATCATTCATCTTTGATCAAT+TGG 0.253149 5_4:+6751777 None:intergenic
ATTTGAGAGAAGAGAGAAAA+AGG 0.256376 5_4:+6751964 None:intergenic
TGAAGAAAGCAAAGTGTATT+AGG 0.275539 5_4:-6751450 Msa0833650:CDS
ATAATAATTGTTCTATATAT+TGG 0.292414 5_4:-6750342 Msa0833650:three_prime_UTR
CAAATCTCACAAAATCAAAA+AGG 0.336260 5_4:-6751946 Msa0833650:intron
AACTGATATGAATTTGTTCT+TGG 0.340603 5_4:-6751623 Msa0833650:CDS
CAATATATGATAACATAATA+AGG 0.342005 5_4:+6750430 None:intergenic
TAGAATTGGTCTTGTTTGAT+TGG 0.344183 5_4:-6750302 Msa0833650:three_prime_UTR
ACTAGAATTGCTGTTACTAA+TGG 0.388743 5_4:-6751343 Msa0833650:CDS
ACATGGAAGAGGAAAGGTTC+TGG 0.392183 5_4:-6750881 Msa0833650:CDS
AAGATCTTCACTGACCCATT+TGG 0.394651 5_4:-6751647 Msa0833650:CDS
AATTCATATCAGTTTCCAAA+TGG 0.400693 5_4:+6751632 None:intergenic
TGAGAAAGTAAGAACAGAAA+TGG 0.403034 5_4:-6751593 Msa0833650:CDS
ATTCTAGTTCTATAAATTGC+TGG 0.404484 5_4:+6751358 None:intergenic
TAGGACTCAACTCGAAGAAA+TGG 0.407461 5_4:-6751431 Msa0833650:CDS
TCATTCATCTTTGATCAATT+GGG 0.411410 5_4:+6751778 None:intergenic
TTACAATTTAGAAATAGAAT+TGG 0.412578 5_4:-6750316 Msa0833650:three_prime_UTR
TGAAGCACAAGGTGAGAAAA+TGG 0.413624 5_4:-6750758 Msa0833650:CDS
GATGAAGTTGATTTAGAAGC+TGG 0.444831 5_4:-6751700 Msa0833650:CDS
GCAGGAAGTGGATGTGCATT+GGG 0.446829 5_4:-6750645 Msa0833650:CDS
AGAAGATATTATACAGTGAC+AGG 0.449572 5_4:-6750985 Msa0833650:CDS
CTGCTGAAACTCACTACAAT+GGG 0.453019 5_4:+6750583 None:intergenic
CTGAAGCTTTGAAAGAATTG+AGG 0.453110 5_4:-6751504 Msa0833650:CDS
TTCATATTACACATAAAAGA+AGG 0.454819 5_4:+6750550 None:intergenic
GCTGCTAATAGAAGACTCTC+TGG 0.458709 5_4:-6751397 Msa0833650:CDS
ATTCATATCAGTTTCCAAAT+GGG 0.460811 5_4:+6751633 None:intergenic
GCTTCTCATTATGTTAAAGA+TGG 0.464968 5_4:-6750709 Msa0833650:CDS
TGAAGCTTTGAAAGAATTGA+GGG 0.466131 5_4:-6751503 Msa0833650:CDS
GAGATGATGAAAGTTTCTTA+GGG 0.469669 5_4:-6750918 Msa0833650:CDS
TATGAATTTGTTCTTGGAAG+AGG 0.470619 5_4:-6751617 Msa0833650:CDS
AGCAGGAAGTGGATGTGCAT+TGG 0.476019 5_4:-6750646 Msa0833650:CDS
ATTGAGAAGATAATATCAAA+TGG 0.477269 5_4:-6750940 Msa0833650:CDS
ATCAGAAAAGTAGCAGGAAG+TGG 0.480407 5_4:-6750657 Msa0833650:CDS
AACAGTATCAGAAAAGTAGC+AGG 0.504319 5_4:-6750663 Msa0833650:CDS
GAAACTCAAGGAGCTTATGA+TGG 0.521896 5_4:-6751311 Msa0833650:CDS
GATGGTACAAAGAATCTTCA+CGG 0.525784 5_4:-6750691 Msa0833650:CDS
GTATGTTACAACAGGGGCTG+AGG 0.531696 5_4:-6751044 Msa0833650:intron
GAGAAAGTAAGAACAGAAAT+GGG 0.536281 5_4:-6751592 Msa0833650:CDS
TGATGAAAGTTTCTTAGGGA+AGG 0.540453 5_4:-6750914 Msa0833650:CDS
AGACTCTCTGGACTTAAAGA+TGG 0.542560 5_4:-6751385 Msa0833650:CDS
TGAATATTGAAAGGAAGTGA+AGG 0.545573 5_4:+6752057 None:intergenic
AAGTAGATTTGAATATTGAA+AGG 0.547316 5_4:+6752048 None:intergenic
GCAATACAAGAACATGGAAG+AGG 0.566682 5_4:-6750892 Msa0833650:CDS
ACTGCTGAAACTCACTACAA+TGG 0.567938 5_4:+6750582 None:intergenic
AGCGAATACAAAGAAACAGT+AGG 0.587219 5_4:-6751009 Msa0833650:CDS
GCGAATACAAAGAAACAGTA+GGG 0.593645 5_4:-6751008 Msa0833650:CDS
TGGCTTGCGTAAGAAACTCA+AGG 0.596215 5_4:-6751323 Msa0833650:CDS
GAAAGAAGCGCAGATTGAGA+AGG 0.596374 5_4:+6751997 None:intergenic
AGTTGGGAAAATGGGTCTAA+CGG 0.597842 5_4:+6752089 None:intergenic
AGGGGAACATGCTGATGAAG+AGG 0.599762 5_4:-6750965 Msa0833650:CDS
ACAAGAACATGGAAGAGGAA+AGG 0.606969 5_4:-6750887 Msa0833650:CDS
GGGAAGGCAATACAAGAACA+TGG 0.609551 5_4:-6750898 Msa0833650:CDS
AGGAAAGGTTCTGGAAACTG+TGG 0.660613 5_4:-6750872 Msa0833650:CDS
AGTCGTACACAACTCAACAA+AGG 0.678381 5_4:+6750470 None:intergenic
GAAGATATTATACAGTGACA+GGG 0.694420 5_4:-6750984 Msa0833650:CDS
GCTGTTATGGTTGAAGCACA+AGG 0.705464 5_4:-6750769 Msa0833650:CDS
AAGATATTATACAGTGACAG+GGG 0.720898 5_4:-6750983 Msa0833650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATTGTTCTATATAT+TGG - chr5_4:6752057-6752076 Msa0833650:five_prime_UTR 10.0%
!! ATAATAATTGTTCTATATAT+TGG - chr5_4:6752057-6752076 Msa0833650:five_prime_UTR 10.0%
!! TAAAAAGAATATAAATGTGA+AGG + chr5_4:6750578-6750597 None:intergenic 15.0%
!!! GAATTTATGTATCAATTTTA+AGG - chr5_4:6751190-6751209 Msa0833650:intron 15.0%
!!! GAAATTAGTCTTATTTAATA+AGG + chr5_4:6751252-6751271 None:intergenic 15.0%
!! CAATATATGATAACATAATA+AGG + chr5_4:6751972-6751991 None:intergenic 15.0%
!! TTACAATTTAGAAATAGAAT+TGG - chr5_4:6752083-6752102 Msa0833650:five_prime_UTR 15.0%
!! TAAAAAGAATATAAATGTGA+AGG + chr5_4:6750578-6750597 None:intergenic 15.0%
!!! GAATTTATGTATCAATTTTA+AGG - chr5_4:6751190-6751209 Msa0833650:intron 15.0%
!!! GAAATTAGTCTTATTTAATA+AGG + chr5_4:6751252-6751271 None:intergenic 15.0%
!! CAATATATGATAACATAATA+AGG + chr5_4:6751972-6751991 None:intergenic 15.0%
!! TTACAATTTAGAAATAGAAT+TGG - chr5_4:6752083-6752102 Msa0833650:five_prime_UTR 15.0%
!! AAGTAGATTTGAATATTGAA+AGG + chr5_4:6750354-6750373 None:intergenic 20.0%
!! AGATTAACATACAAAAATTG+TGG + chr5_4:6750546-6750565 None:intergenic 20.0%
!!! TATATTCTTTTTATCTATGC+AGG - chr5_4:6750585-6750604 Msa0833650:CDS 20.0%
!!! TTTTTTTAGATCAACATAGT+TGG + chr5_4:6750667-6750686 None:intergenic 20.0%
!! ATTGAGAAGATAATATCAAA+TGG - chr5_4:6751459-6751478 Msa0833650:CDS 20.0%
!!! TCATCAAATATTTTTGGATA+TGG - chr5_4:6751608-6751627 Msa0833650:CDS 20.0%
!! TTCATATTACACATAAAAGA+AGG + chr5_4:6751852-6751871 None:intergenic 20.0%
!! AAGTAGATTTGAATATTGAA+AGG + chr5_4:6750354-6750373 None:intergenic 20.0%
!! AGATTAACATACAAAAATTG+TGG + chr5_4:6750546-6750565 None:intergenic 20.0%
!!! TATATTCTTTTTATCTATGC+AGG - chr5_4:6750585-6750604 Msa0833650:CDS 20.0%
!!! TTTTTTTAGATCAACATAGT+TGG + chr5_4:6750667-6750686 None:intergenic 20.0%
!! ATTGAGAAGATAATATCAAA+TGG - chr5_4:6751459-6751478 Msa0833650:CDS 20.0%
!!! TCATCAAATATTTTTGGATA+TGG - chr5_4:6751608-6751627 Msa0833650:CDS 20.0%
!! TTCATATTACACATAAAAGA+AGG + chr5_4:6751852-6751871 None:intergenic 20.0%
!!! TTTTTATGAGTTGGGAAAAT+GGG + chr5_4:6750321-6750340 None:intergenic 25.0%
!!! TTTTTTATGAGTTGGGAAAA+TGG + chr5_4:6750322-6750341 None:intergenic 25.0%
! CAAATCTCACAAAATCAAAA+AGG - chr5_4:6750453-6750472 Msa0833650:three_prime_UTR 25.0%
! TCATTCATCTTTGATCAATT+GGG + chr5_4:6750624-6750643 None:intergenic 25.0%
! ATCATTCATCTTTGATCAAT+TGG + chr5_4:6750625-6750644 None:intergenic 25.0%
! ATTCATATCAGTTTCCAAAT+GGG + chr5_4:6750769-6750788 None:intergenic 25.0%
! AATTCATATCAGTTTCCAAA+TGG + chr5_4:6750770-6750789 None:intergenic 25.0%
!! AACTGATATGAATTTGTTCT+TGG - chr5_4:6750776-6750795 Msa0833650:CDS 25.0%
!!! ATTCTAGTTCTATAAATTGC+TGG + chr5_4:6751044-6751063 None:intergenic 25.0%
! TCAGATAATGTCATATTCTA+AGG - chr5_4:6751270-6751289 Msa0833650:intron 25.0%
!! GGAACTTCATCAAATATTTT+TGG - chr5_4:6751602-6751621 Msa0833650:CDS 25.0%
!! GATTATACTTTTGCTTATTC+TGG - chr5_4:6751776-6751795 Msa0833650:exon 25.0%
!!! TTTTTATGAGTTGGGAAAAT+GGG + chr5_4:6750321-6750340 None:intergenic 25.0%
!!! TTTTTTATGAGTTGGGAAAA+TGG + chr5_4:6750322-6750341 None:intergenic 25.0%
! CAAATCTCACAAAATCAAAA+AGG - chr5_4:6750453-6750472 Msa0833650:three_prime_UTR 25.0%
! TCATTCATCTTTGATCAATT+GGG + chr5_4:6750624-6750643 None:intergenic 25.0%
! ATCATTCATCTTTGATCAAT+TGG + chr5_4:6750625-6750644 None:intergenic 25.0%
! ATTCATATCAGTTTCCAAAT+GGG + chr5_4:6750769-6750788 None:intergenic 25.0%
! AATTCATATCAGTTTCCAAA+TGG + chr5_4:6750770-6750789 None:intergenic 25.0%
!! AACTGATATGAATTTGTTCT+TGG - chr5_4:6750776-6750795 Msa0833650:CDS 25.0%
!!! ATTCTAGTTCTATAAATTGC+TGG + chr5_4:6751044-6751063 None:intergenic 25.0%
! TCAGATAATGTCATATTCTA+AGG - chr5_4:6751270-6751289 Msa0833650:intron 25.0%
!! GGAACTTCATCAAATATTTT+TGG - chr5_4:6751602-6751621 Msa0833650:CDS 25.0%
!! GATTATACTTTTGCTTATTC+TGG - chr5_4:6751776-6751795 Msa0833650:exon 25.0%
!!! GTGAAGGTTTTTTATGAGTT+GGG + chr5_4:6750329-6750348 None:intergenic 30.0%
!!! AGTGAAGGTTTTTTATGAGT+TGG + chr5_4:6750330-6750349 None:intergenic 30.0%
TGAATATTGAAAGGAAGTGA+AGG + chr5_4:6750345-6750364 None:intergenic 30.0%
!! GGAAATTTTTGAGGAATCTA+GGG + chr5_4:6750384-6750403 None:intergenic 30.0%
!! AGGAAATTTTTGAGGAATCT+AGG + chr5_4:6750385-6750404 None:intergenic 30.0%
! GATTGAGAAGGAAATTTTTG+AGG + chr5_4:6750393-6750412 None:intergenic 30.0%
ATTTGAGAGAAGAGAGAAAA+AGG + chr5_4:6750438-6750457 None:intergenic 30.0%
CTTTGATCAATTGGGTATAA+AGG + chr5_4:6750616-6750635 None:intergenic 30.0%
! TATGAATTTGTTCTTGGAAG+AGG - chr5_4:6750782-6750801 Msa0833650:CDS 30.0%
TGAGAAAGTAAGAACAGAAA+TGG - chr5_4:6750806-6750825 Msa0833650:CDS 30.0%
GAGAAAGTAAGAACAGAAAT+GGG - chr5_4:6750807-6750826 Msa0833650:CDS 30.0%
!! TGAAGCTTTGAAAGAATTGA+GGG - chr5_4:6750896-6750915 Msa0833650:CDS 30.0%
TGAAGAAAGCAAAGTGTATT+AGG - chr5_4:6750949-6750968 Msa0833650:CDS 30.0%
! ACTAGAATTGCTGTTACTAA+TGG - chr5_4:6751056-6751075 Msa0833650:intron 30.0%
!!! TCTTCTGCTTTTTTTCTTTC+TGG - chr5_4:6751140-6751159 Msa0833650:intron 30.0%
AAACCTTGTATGTTACAACA+GGG - chr5_4:6751348-6751367 Msa0833650:CDS 30.0%
AGAAGATATTATACAGTGAC+AGG - chr5_4:6751414-6751433 Msa0833650:CDS 30.0%
GAAGATATTATACAGTGACA+GGG - chr5_4:6751415-6751434 Msa0833650:CDS 30.0%
AAGATATTATACAGTGACAG+GGG - chr5_4:6751416-6751435 Msa0833650:CDS 30.0%
GAGATGATGAAAGTTTCTTA+GGG - chr5_4:6751481-6751500 Msa0833650:CDS 30.0%
AGAGATTGAGAAGAGTTTAT+TGG - chr5_4:6751581-6751600 Msa0833650:CDS 30.0%
!! ATTTTTGGATATGGCTGTTA+TGG - chr5_4:6751617-6751636 Msa0833650:CDS 30.0%
GCTTCTCATTATGTTAAAGA+TGG - chr5_4:6751690-6751709 Msa0833650:CDS 30.0%
!! TAGAATTGGTCTTGTTTGAT+TGG - chr5_4:6752097-6752116 Msa0833650:five_prime_UTR 30.0%
!!! GTGAAGGTTTTTTATGAGTT+GGG + chr5_4:6750329-6750348 None:intergenic 30.0%
!!! AGTGAAGGTTTTTTATGAGT+TGG + chr5_4:6750330-6750349 None:intergenic 30.0%
TGAATATTGAAAGGAAGTGA+AGG + chr5_4:6750345-6750364 None:intergenic 30.0%
!! GGAAATTTTTGAGGAATCTA+GGG + chr5_4:6750384-6750403 None:intergenic 30.0%
!! AGGAAATTTTTGAGGAATCT+AGG + chr5_4:6750385-6750404 None:intergenic 30.0%
! GATTGAGAAGGAAATTTTTG+AGG + chr5_4:6750393-6750412 None:intergenic 30.0%
ATTTGAGAGAAGAGAGAAAA+AGG + chr5_4:6750438-6750457 None:intergenic 30.0%
CTTTGATCAATTGGGTATAA+AGG + chr5_4:6750616-6750635 None:intergenic 30.0%
! TATGAATTTGTTCTTGGAAG+AGG - chr5_4:6750782-6750801 Msa0833650:CDS 30.0%
TGAGAAAGTAAGAACAGAAA+TGG - chr5_4:6750806-6750825 Msa0833650:CDS 30.0%
GAGAAAGTAAGAACAGAAAT+GGG - chr5_4:6750807-6750826 Msa0833650:CDS 30.0%
!! TGAAGCTTTGAAAGAATTGA+GGG - chr5_4:6750896-6750915 Msa0833650:CDS 30.0%
TGAAGAAAGCAAAGTGTATT+AGG - chr5_4:6750949-6750968 Msa0833650:CDS 30.0%
! ACTAGAATTGCTGTTACTAA+TGG - chr5_4:6751056-6751075 Msa0833650:intron 30.0%
!!! TCTTCTGCTTTTTTTCTTTC+TGG - chr5_4:6751140-6751159 Msa0833650:intron 30.0%
AAACCTTGTATGTTACAACA+GGG - chr5_4:6751348-6751367 Msa0833650:CDS 30.0%
AGAAGATATTATACAGTGAC+AGG - chr5_4:6751414-6751433 Msa0833650:CDS 30.0%
GAAGATATTATACAGTGACA+GGG - chr5_4:6751415-6751434 Msa0833650:CDS 30.0%
AAGATATTATACAGTGACAG+GGG - chr5_4:6751416-6751435 Msa0833650:CDS 30.0%
GAGATGATGAAAGTTTCTTA+GGG - chr5_4:6751481-6751500 Msa0833650:CDS 30.0%
AGAGATTGAGAAGAGTTTAT+TGG - chr5_4:6751581-6751600 Msa0833650:CDS 30.0%
!! ATTTTTGGATATGGCTGTTA+TGG - chr5_4:6751617-6751636 Msa0833650:CDS 30.0%
GCTTCTCATTATGTTAAAGA+TGG - chr5_4:6751690-6751709 Msa0833650:CDS 30.0%
!! TAGAATTGGTCTTGTTTGAT+TGG - chr5_4:6752097-6752116 Msa0833650:five_prime_UTR 30.0%
! GATGAAGTTGATTTAGAAGC+TGG - chr5_4:6750699-6750718 Msa0833650:CDS 35.0%
!! CTGAAGCTTTGAAAGAATTG+AGG - chr5_4:6750895-6750914 Msa0833650:CDS 35.0%
AGCAGAAGAGAAATTGACAA+GGG + chr5_4:6751129-6751148 None:intergenic 35.0%
AAGCAGAAGAGAAATTGACA+AGG + chr5_4:6751130-6751149 None:intergenic 35.0%
GAAACCTTGTATGTTACAAC+AGG - chr5_4:6751347-6751366 Msa0833650:CDS 35.0%
AACCTTGTATGTTACAACAG+GGG - chr5_4:6751349-6751368 Msa0833650:CDS 35.0%
AGCGAATACAAAGAAACAGT+AGG - chr5_4:6751390-6751409 Msa0833650:CDS 35.0%
GCGAATACAAAGAAACAGTA+GGG - chr5_4:6751391-6751410 Msa0833650:CDS 35.0%
GGAGATGATGAAAGTTTCTT+AGG - chr5_4:6751480-6751499 Msa0833650:CDS 35.0%
TGATGAAAGTTTCTTAGGGA+AGG - chr5_4:6751485-6751504 Msa0833650:CDS 35.0%
GATGGTACAAAGAATCTTCA+CGG - chr5_4:6751708-6751727 Msa0833650:CDS 35.0%
AACAGTATCAGAAAAGTAGC+AGG - chr5_4:6751736-6751755 Msa0833650:CDS 35.0%
! GATGAAGTTGATTTAGAAGC+TGG - chr5_4:6750699-6750718 Msa0833650:CDS 35.0%
!! CTGAAGCTTTGAAAGAATTG+AGG - chr5_4:6750895-6750914 Msa0833650:CDS 35.0%
AGCAGAAGAGAAATTGACAA+GGG + chr5_4:6751129-6751148 None:intergenic 35.0%
AAGCAGAAGAGAAATTGACA+AGG + chr5_4:6751130-6751149 None:intergenic 35.0%
GAAACCTTGTATGTTACAAC+AGG - chr5_4:6751347-6751366 Msa0833650:CDS 35.0%
AACCTTGTATGTTACAACAG+GGG - chr5_4:6751349-6751368 Msa0833650:CDS 35.0%
AGCGAATACAAAGAAACAGT+AGG - chr5_4:6751390-6751409 Msa0833650:CDS 35.0%
GCGAATACAAAGAAACAGTA+GGG - chr5_4:6751391-6751410 Msa0833650:CDS 35.0%
GGAGATGATGAAAGTTTCTT+AGG - chr5_4:6751480-6751499 Msa0833650:CDS 35.0%
TGATGAAAGTTTCTTAGGGA+AGG - chr5_4:6751485-6751504 Msa0833650:CDS 35.0%
GATGGTACAAAGAATCTTCA+CGG - chr5_4:6751708-6751727 Msa0833650:CDS 35.0%
AACAGTATCAGAAAAGTAGC+AGG - chr5_4:6751736-6751755 Msa0833650:CDS 35.0%
AGTTGGGAAAATGGGTCTAA+CGG + chr5_4:6750313-6750332 None:intergenic 40.0%
!! GAAGCTGGTCTTCAAAAACA+AGG - chr5_4:6750714-6750733 Msa0833650:CDS 40.0%
AAGATCTTCACTGACCCATT+TGG - chr5_4:6750752-6750771 Msa0833650:CDS 40.0%
TAGGACTCAACTCGAAGAAA+TGG - chr5_4:6750968-6750987 Msa0833650:CDS 40.0%
AGACTCTCTGGACTTAAAGA+TGG - chr5_4:6751014-6751033 Msa0833650:CDS 40.0%
GAAACTCAAGGAGCTTATGA+TGG - chr5_4:6751088-6751107 Msa0833650:intron 40.0%
GCAATACAAGAACATGGAAG+AGG - chr5_4:6751507-6751526 Msa0833650:CDS 40.0%
ACAAGAACATGGAAGAGGAA+AGG - chr5_4:6751512-6751531 Msa0833650:CDS 40.0%
TGAAGCACAAGGTGAGAAAA+TGG - chr5_4:6751641-6751660 Msa0833650:CDS 40.0%
ATCAGAAAAGTAGCAGGAAG+TGG - chr5_4:6751742-6751761 Msa0833650:CDS 40.0%
CTGCTGAAACTCACTACAAT+GGG + chr5_4:6751819-6751838 None:intergenic 40.0%
ACTGCTGAAACTCACTACAA+TGG + chr5_4:6751820-6751839 None:intergenic 40.0%
AGTCGTACACAACTCAACAA+AGG + chr5_4:6751932-6751951 None:intergenic 40.0%
AGTTGGGAAAATGGGTCTAA+CGG + chr5_4:6750313-6750332 None:intergenic 40.0%
!! GAAGCTGGTCTTCAAAAACA+AGG - chr5_4:6750714-6750733 Msa0833650:CDS 40.0%
AAGATCTTCACTGACCCATT+TGG - chr5_4:6750752-6750771 Msa0833650:CDS 40.0%
TAGGACTCAACTCGAAGAAA+TGG - chr5_4:6750968-6750987 Msa0833650:CDS 40.0%
AGACTCTCTGGACTTAAAGA+TGG - chr5_4:6751014-6751033 Msa0833650:CDS 40.0%
GAAACTCAAGGAGCTTATGA+TGG - chr5_4:6751088-6751107 Msa0833650:intron 40.0%
GCAATACAAGAACATGGAAG+AGG - chr5_4:6751507-6751526 Msa0833650:CDS 40.0%
ACAAGAACATGGAAGAGGAA+AGG - chr5_4:6751512-6751531 Msa0833650:CDS 40.0%
TGAAGCACAAGGTGAGAAAA+TGG - chr5_4:6751641-6751660 Msa0833650:CDS 40.0%
ATCAGAAAAGTAGCAGGAAG+TGG - chr5_4:6751742-6751761 Msa0833650:CDS 40.0%
CTGCTGAAACTCACTACAAT+GGG + chr5_4:6751819-6751838 None:intergenic 40.0%
ACTGCTGAAACTCACTACAA+TGG + chr5_4:6751820-6751839 None:intergenic 40.0%
AGTCGTACACAACTCAACAA+AGG + chr5_4:6751932-6751951 None:intergenic 40.0%
! GAAAGAAGCGCAGATTGAGA+AGG + chr5_4:6750405-6750424 None:intergenic 45.0%
!! GCTGGTCTTCAAAAACAAGG+TGG - chr5_4:6750717-6750736 Msa0833650:CDS 45.0%
GCTGCTAATAGAAGACTCTC+TGG - chr5_4:6751002-6751021 Msa0833650:CDS 45.0%
! TGGCTTGCGTAAGAAACTCA+AGG - chr5_4:6751076-6751095 Msa0833650:intron 45.0%
! GGAGCTTATGATGGAGTTTC+AGG - chr5_4:6751097-6751116 Msa0833650:intron 45.0%
AGCCCCTGTTGTAACATACA+AGG + chr5_4:6751354-6751373 None:intergenic 45.0%
GGGAAGGCAATACAAGAACA+TGG - chr5_4:6751501-6751520 Msa0833650:CDS 45.0%
ACATGGAAGAGGAAAGGTTC+TGG - chr5_4:6751518-6751537 Msa0833650:CDS 45.0%
!! AGGAAAGGTTCTGGAAACTG+TGG - chr5_4:6751527-6751546 Msa0833650:CDS 45.0%
GCTGTTATGGTTGAAGCACA+AGG - chr5_4:6751630-6751649 Msa0833650:CDS 45.0%
! GAAAGAAGCGCAGATTGAGA+AGG + chr5_4:6750405-6750424 None:intergenic 45.0%
!! GCTGGTCTTCAAAAACAAGG+TGG - chr5_4:6750717-6750736 Msa0833650:CDS 45.0%
GCTGCTAATAGAAGACTCTC+TGG - chr5_4:6751002-6751021 Msa0833650:CDS 45.0%
! TGGCTTGCGTAAGAAACTCA+AGG - chr5_4:6751076-6751095 Msa0833650:intron 45.0%
! GGAGCTTATGATGGAGTTTC+AGG - chr5_4:6751097-6751116 Msa0833650:intron 45.0%
AGCCCCTGTTGTAACATACA+AGG + chr5_4:6751354-6751373 None:intergenic 45.0%
GGGAAGGCAATACAAGAACA+TGG - chr5_4:6751501-6751520 Msa0833650:CDS 45.0%
ACATGGAAGAGGAAAGGTTC+TGG - chr5_4:6751518-6751537 Msa0833650:CDS 45.0%
!! AGGAAAGGTTCTGGAAACTG+TGG - chr5_4:6751527-6751546 Msa0833650:CDS 45.0%
GCTGTTATGGTTGAAGCACA+AGG - chr5_4:6751630-6751649 Msa0833650:CDS 45.0%
GTATGTTACAACAGGGGCTG+AGG - chr5_4:6751355-6751374 Msa0833650:CDS 50.0%
AGGGGAACATGCTGATGAAG+AGG - chr5_4:6751434-6751453 Msa0833650:CDS 50.0%
AGCAGGAAGTGGATGTGCAT+TGG - chr5_4:6751753-6751772 Msa0833650:CDS 50.0%
GCAGGAAGTGGATGTGCATT+GGG - chr5_4:6751754-6751773 Msa0833650:CDS 50.0%
GTATGTTACAACAGGGGCTG+AGG - chr5_4:6751355-6751374 Msa0833650:CDS 50.0%
AGGGGAACATGCTGATGAAG+AGG - chr5_4:6751434-6751453 Msa0833650:CDS 50.0%
AGCAGGAAGTGGATGTGCAT+TGG - chr5_4:6751753-6751772 Msa0833650:CDS 50.0%
GCAGGAAGTGGATGTGCATT+GGG - chr5_4:6751754-6751773 Msa0833650:CDS 50.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 6750300 6752121 6750300 ID=Msa0833650;Name=Msa0833650
chr5_4 mRNA 6750300 6752121 6750300 ID=Msa0833650-mRNA-1;Parent=Msa0833650;Name=Msa0833650-mRNA-1;_AED=0.02;_eAED=0.02;_QI=204|1|1|1|0.5|0.33|3|276|319
chr5_4 exon 6750300 6751052 6750300 ID=Msa0833650-mRNA-1:exon:2968;Parent=Msa0833650-mRNA-1
chr5_4 exon 6751303 6751814 6751303 ID=Msa0833650-mRNA-1:exon:2967;Parent=Msa0833650-mRNA-1
chr5_4 exon 6751947 6752121 6751947 ID=Msa0833650-mRNA-1:exon:2966;Parent=Msa0833650-mRNA-1
chr5_4 five_prime_UTR 6751947 6752121 6751947 ID=Msa0833650-mRNA-1:five_prime_utr;Parent=Msa0833650-mRNA-1
chr5_4 five_prime_UTR 6751786 6751814 6751786 ID=Msa0833650-mRNA-1:five_prime_utr;Parent=Msa0833650-mRNA-1
chr5_4 CDS 6751303 6751785 6751303 ID=Msa0833650-mRNA-1:cds;Parent=Msa0833650-mRNA-1
chr5_4 CDS 6750576 6751052 6750576 ID=Msa0833650-mRNA-1:cds;Parent=Msa0833650-mRNA-1
chr5_4 three_prime_UTR 6750300 6750575 6750300 ID=Msa0833650-mRNA-1:three_prime_utr;Parent=Msa0833650-mRNA-1
Gene Sequence

>Msa0833650

ATGAATGATCTAATGACAAAATCATTCACCAACTATGTTGATCTAAAAAAAGCAGCTATGAAAGATGAAGTTGATTTAGAAGCTGGTCTTCAAAAACAAGGTGGTGTTGAATTAACAAGATCTTCACTGACCCATTTGGAAACTGATATGAATTTGTTCTTGGAAGAGGCTGAGAAAGTAAGAACAGAAATGGGTGAAATTCGCGATATACTAACAAAGCTTGAACAAGCAAATGAAGAGAGCAAGAGTCTTCACAAAACTGAAGCTTTGAAAGAATTGAGGGAAAGAATTAATACTGATATTGTAACAGTTTTGAAGAAAGCAAAGTGTATTAGGACTCAACTCGAAGAAATGGATCGTGCTAATGCTGCTAATAGAAGACTCTCTGGACTTAAAGATGGTTCACCAGCAATTTATAGAACTAGAATTGCTGTTACTAATGGCTTGCGTAAGAAACTCAAGGAGCTTATGATGGAGTTTCAGGGGCTGAGGCAGAAAATGATGAGCGAATACAAAGAAACAGTAGGGAGAAGATATTATACAGTGACAGGGGAACATGCTGATGAAGAGGTAATTGAGAAGATAATATCAAATGGAGATGATGAAAGTTTCTTAGGGAAGGCAATACAAGAACATGGAAGAGGAAAGGTTCTGGAAACTGTGGTTGAGATACAAGACAGACATGATGCTGCTAAAGAGATTGAGAAGAGTTTATTGGAACTTCATCAAATATTTTTGGATATGGCTGTTATGGTTGAAGCACAAGGTGAGAAAATGGATGATATTGAACATCATGTTCTTCATGCTTCTCATTATGTTAAAGATGGTACAAAGAATCTTCACGGTGCTAAACAGTATCAGAAAAGTAGCAGGAAGTGGATGTGCATTGGGATTATACTTTTGCTTATTCTGGTTCTCATCATTGTTATTCCCATTGTAGTGAGTTTCAGCAGTTCTTGA

Protein sequence

>Msa0833650

MNDLMTKSFTNYVDLKKAAMKDEVDLEAGLQKQGGVELTRSSLTHLETDMNLFLEEAEKVRTEMGEIRDILTKLEQANEESKSLHKTEALKELRERINTDIVTVLKKAKCIRTQLEEMDRANAANRRLSGLKDGSPAIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMSEYKETVGRRYYTVTGEHADEEVIEKIISNGDDESFLGKAIQEHGRGKVLETVVEIQDRHDAAKEIEKSLLELHQIFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLHGAKQYQKSSRKWMCIGIILLLILVLIIVIPIVVSFSSS*