AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0580370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580370 MtrunA17_Chr5g0398891 99.062 320 2 1 1 319 1 320 0.0 640
Msa0580370 MtrunA17_Chr4g0048121 50.508 295 129 4 1 295 1 278 7.45e-101 298
Msa0580370 MtrunA17_Chr2g0281201 53.279 244 113 1 73 316 10 252 8.44e-97 286
Msa0580370 MtrunA17_Chr1g0177121 42.953 298 154 3 1 295 1 285 1.63e-86 262
Msa0580370 MtrunA17_Chr1g0177131 48.988 247 125 1 49 295 44 289 2.35e-84 258
Msa0580370 MtrunA17_Chr7g0267551 46.122 245 131 1 53 297 31 274 8.69e-78 239
Msa0580370 MtrunA17_Chr5g0404401 46.128 297 136 6 1 294 1 276 3.39e-77 238
Msa0580370 MtrunA17_Chr2g0322801 44.781 297 148 5 1 295 1 283 1.27e-75 234
Msa0580370 MtrunA17_Chr6g0461261 41.077 297 158 3 1 297 1 280 7.67e-73 227
Msa0580370 MtrunA17_Chr8g0370611 41.221 131 64 3 1 129 1 120 5.92e-20 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580370 AT1G08560.1 65.312 320 100 5 1 319 1 310 6.53e-133 380
Msa0580370 AT1G61290.1 48.562 313 139 4 1 311 1 293 7.25e-104 306
Msa0580370 AT1G61290.2 48.562 313 139 4 1 311 1 293 7.25e-104 306
Msa0580370 AT4G03330.1 47.937 315 149 3 1 315 1 300 1.38e-94 283
Msa0580370 AT1G11250.1 47.458 295 132 4 1 295 1 272 9.90e-92 275
Msa0580370 AT3G11820.1 50.575 261 128 1 35 295 29 288 2.95e-88 268
Msa0580370 AT3G11820.2 52.632 247 116 1 49 295 12 257 7.62e-88 266
Msa0580370 AT3G52400.1 43.624 298 158 3 1 297 1 289 5.05e-80 247
Msa0580370 AT2G18260.2 38.730 315 182 4 1 315 1 304 1.02e-70 222
Msa0580370 AT2G18260.1 38.730 315 182 4 1 315 1 304 1.02e-70 222
Msa0580370 AT3G03800.2 43.019 265 150 1 53 317 38 301 5.76e-68 215
Msa0580370 AT3G03800.1 43.019 265 150 1 53 317 38 301 5.76e-68 215
Msa0580370 AT5G08080.1 43.729 295 149 4 1 295 1 278 2.00e-66 211
Msa0580370 AT5G08080.4 43.729 295 149 4 1 295 1 278 2.00e-66 211
Msa0580370 AT5G08080.3 43.434 297 158 6 1 295 1 289 8.16e-65 207
Msa0580370 AT5G08080.5 39.171 217 115 4 1 217 1 200 1.25e-31 118
Msa0580370 AT5G08080.2 39.171 217 115 4 1 217 1 200 1.25e-31 118

Find 61 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGATTGAGAAGAGTTTAT+TGG 0.159342 4_1:-85423299 Msa0580370:CDS
GGAGATGATGAAAGTTTCTT+AGG 0.183110 4_1:-85423400 Msa0580370:CDS
GGAGCTTATGATGGAGTTTC+AGG 0.211805 4_1:-85423783 Msa0580370:intron
CTTTGATCAATTGGGTATAA+AGG 0.240284 4_1:+85424267 None:intergenic
ATCATTCATCTTTGATCAAT+TGG 0.253149 4_1:+85424258 None:intergenic
ATTTGAGAGAAGAGAGAAAA+AGG 0.256376 4_1:+85424445 None:intergenic
TGAAGAAAGCAAAGTGTATT+AGG 0.275539 4_1:-85423931 Msa0580370:CDS
ATAATAATTGTTCTATATAT+TGG 0.292414 4_1:-85422826 Msa0580370:three_prime_UTR
CAAATCTCACAAAATCAAAA+AGG 0.336260 4_1:-85424427 Msa0580370:intron
AACTGATATGAATTTGTTCT+TGG 0.340603 4_1:-85424104 Msa0580370:CDS
TAGAATTGGTCTTGTTTGAT+TGG 0.344183 4_1:-85422786 Msa0580370:three_prime_UTR
ACTAGAATTGCTGTTACTAA+TGG 0.388743 4_1:-85423824 Msa0580370:CDS
ACATGGAAGAGGAAAGGTTC+TGG 0.392183 4_1:-85423362 Msa0580370:CDS
AAGATCTTCACTGACCCATT+TGG 0.394651 4_1:-85424128 Msa0580370:CDS
AATTCATATCAGTTTCCAAA+TGG 0.400693 4_1:+85424113 None:intergenic
TGAGAAAGTAAGAACAGAAA+TGG 0.403034 4_1:-85424074 Msa0580370:CDS
ATTCTAGTTCTATAAATTGC+TGG 0.404484 4_1:+85423839 None:intergenic
TAGGACTCAACTCGAAGAAA+TGG 0.407461 4_1:-85423912 Msa0580370:CDS
TCATTCATCTTTGATCAATT+GGG 0.411410 4_1:+85424259 None:intergenic
TTACAATTTAGAAATAGAAT+TGG 0.412578 4_1:-85422800 Msa0580370:three_prime_UTR
TGAAGCACAAGGTGAGAAAA+TGG 0.413624 4_1:-85423239 Msa0580370:CDS
GATGAAGTTGATTTAGAAGC+TGG 0.444831 4_1:-85424181 Msa0580370:CDS
GCAGGAAGTGGATGTGCATT+GGG 0.446829 4_1:-85423126 Msa0580370:CDS
AGAAGATATTATACAGTGAC+AGG 0.449572 4_1:-85423466 Msa0580370:CDS
CTGCTGAAACTCACTACAAT+GGG 0.453019 4_1:+85423064 None:intergenic
CTGAAGCTTTGAAAGAATTG+AGG 0.453110 4_1:-85423985 Msa0580370:CDS
TTCATATTACACATAAAAGA+AGG 0.454819 4_1:+85423031 None:intergenic
GCTGCTAATAGAAGACTCTC+TGG 0.458709 4_1:-85423878 Msa0580370:CDS
ATTCATATCAGTTTCCAAAT+GGG 0.460811 4_1:+85424114 None:intergenic
GCTTCTCATTATGTTAAAGA+TGG 0.464968 4_1:-85423190 Msa0580370:CDS
TGAAGCTTTGAAAGAATTGA+GGG 0.466131 4_1:-85423984 Msa0580370:CDS
GAGATGATGAAAGTTTCTTA+GGG 0.469669 4_1:-85423399 Msa0580370:CDS
TATGAATTTGTTCTTGGAAG+AGG 0.470619 4_1:-85424098 Msa0580370:CDS
GCACAATATATGATAACATA+AGG 0.472462 4_1:+85422911 None:intergenic
AGCAGGAAGTGGATGTGCAT+TGG 0.476019 4_1:-85423127 Msa0580370:CDS
ATTGAGAAGATAATATCAAA+TGG 0.477269 4_1:-85423421 Msa0580370:CDS
ATCAGAAAAGTAGCAGGAAG+TGG 0.480407 4_1:-85423138 Msa0580370:CDS
AACAGTATCAGAAAAGTAGC+AGG 0.504319 4_1:-85423144 Msa0580370:CDS
GAAACTCAAGGAGCTTATGA+TGG 0.521896 4_1:-85423792 Msa0580370:CDS
GATGGTACAAAGAATCTTCA+CGG 0.525784 4_1:-85423172 Msa0580370:CDS
GTATGTTACAACAGGGGCTG+AGG 0.531696 4_1:-85423525 Msa0580370:intron
GAGAAAGTAAGAACAGAAAT+GGG 0.536281 4_1:-85424073 Msa0580370:CDS
TGATGAAAGTTTCTTAGGGA+AGG 0.540453 4_1:-85423395 Msa0580370:CDS
AGACTCTCTGGACTTAAAGA+TGG 0.542560 4_1:-85423866 Msa0580370:CDS
TGAATATTGAAAGGAAGTGA+AGG 0.545573 4_1:+85424538 None:intergenic
AAGTAGATTTGAATATTGAA+AGG 0.547316 4_1:+85424529 None:intergenic
GCAATACAAGAACATGGAAG+AGG 0.566682 4_1:-85423373 Msa0580370:CDS
ACTGCTGAAACTCACTACAA+TGG 0.567938 4_1:+85423063 None:intergenic
AGCGAATACAAAGAAACAGT+AGG 0.587219 4_1:-85423490 Msa0580370:CDS
GCGAATACAAAGAAACAGTA+GGG 0.593645 4_1:-85423489 Msa0580370:CDS
TGGCTTGCGTAAGAAACTCA+AGG 0.596215 4_1:-85423804 Msa0580370:CDS
GAAAGAAGCGCAGATTGAGA+AGG 0.596374 4_1:+85424478 None:intergenic
AGTTGGGAAAATGGGTCTAA+CGG 0.597842 4_1:+85424570 None:intergenic
AGGGGAACATGCTGATGAAG+AGG 0.599762 4_1:-85423446 Msa0580370:CDS
ACAAGAACATGGAAGAGGAA+AGG 0.606969 4_1:-85423368 Msa0580370:CDS
GGGAAGGCAATACAAGAACA+TGG 0.609551 4_1:-85423379 Msa0580370:CDS
AGGAAAGGTTCTGGAAACTG+TGG 0.660613 4_1:-85423353 Msa0580370:CDS
AGTCGTACACAACTCAACAA+AGG 0.678381 4_1:+85422951 None:intergenic
GAAGATATTATACAGTGACA+GGG 0.694420 4_1:-85423465 Msa0580370:CDS
GCTGTTATGGTTGAAGCACA+AGG 0.705464 4_1:-85423250 Msa0580370:CDS
AAGATATTATACAGTGACAG+GGG 0.720898 4_1:-85423464 Msa0580370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATTGTTCTATATAT+TGG - chr4_1:85424538-85424557 Msa0580370:five_prime_UTR 10.0%
!! ATAATAATTGTTCTATATAT+TGG - chr4_1:85424538-85424557 Msa0580370:five_prime_UTR 10.0%
!! TAAAAAGAATATAAATGTGA+AGG + chr4_1:85423062-85423081 None:intergenic 15.0%
!!! GAATTTATGTATCAATTTTA+AGG - chr4_1:85423674-85423693 Msa0580370:intron 15.0%
!!! GAAATTAGTCTTATTTAATA+AGG + chr4_1:85423736-85423755 None:intergenic 15.0%
!! TTACAATTTAGAAATAGAAT+TGG - chr4_1:85424564-85424583 Msa0580370:five_prime_UTR 15.0%
!! TAAAAAGAATATAAATGTGA+AGG + chr4_1:85423062-85423081 None:intergenic 15.0%
!!! GAATTTATGTATCAATTTTA+AGG - chr4_1:85423674-85423693 Msa0580370:intron 15.0%
!!! GAAATTAGTCTTATTTAATA+AGG + chr4_1:85423736-85423755 None:intergenic 15.0%
!! TTACAATTTAGAAATAGAAT+TGG - chr4_1:85424564-85424583 Msa0580370:five_prime_UTR 15.0%
!! AAGTAGATTTGAATATTGAA+AGG + chr4_1:85422838-85422857 None:intergenic 20.0%
!! AGATTAACATACAAAAATTG+TGG + chr4_1:85423030-85423049 None:intergenic 20.0%
!!! TATATTCTTTTTATCTATGC+AGG - chr4_1:85423069-85423088 Msa0580370:CDS 20.0%
!!! TTTTTTTAGATCAACATAGT+TGG + chr4_1:85423151-85423170 None:intergenic 20.0%
!! ATTGAGAAGATAATATCAAA+TGG - chr4_1:85423943-85423962 Msa0580370:CDS 20.0%
!!! TCATCAAATATTTTTGGATA+TGG - chr4_1:85424092-85424111 Msa0580370:CDS 20.0%
!! TTCATATTACACATAAAAGA+AGG + chr4_1:85424336-85424355 None:intergenic 20.0%
!! AAGTAGATTTGAATATTGAA+AGG + chr4_1:85422838-85422857 None:intergenic 20.0%
!! AGATTAACATACAAAAATTG+TGG + chr4_1:85423030-85423049 None:intergenic 20.0%
!!! TATATTCTTTTTATCTATGC+AGG - chr4_1:85423069-85423088 Msa0580370:CDS 20.0%
!!! TTTTTTTAGATCAACATAGT+TGG + chr4_1:85423151-85423170 None:intergenic 20.0%
!! ATTGAGAAGATAATATCAAA+TGG - chr4_1:85423943-85423962 Msa0580370:CDS 20.0%
!!! TCATCAAATATTTTTGGATA+TGG - chr4_1:85424092-85424111 Msa0580370:CDS 20.0%
!! TTCATATTACACATAAAAGA+AGG + chr4_1:85424336-85424355 None:intergenic 20.0%
!!! TTTTTATGAGTTGGGAAAAT+GGG + chr4_1:85422805-85422824 None:intergenic 25.0%
!!! TTTTTTATGAGTTGGGAAAA+TGG + chr4_1:85422806-85422825 None:intergenic 25.0%
! CAAATCTCACAAAATCAAAA+AGG - chr4_1:85422937-85422956 Msa0580370:three_prime_UTR 25.0%
! TCATTCATCTTTGATCAATT+GGG + chr4_1:85423108-85423127 None:intergenic 25.0%
! ATCATTCATCTTTGATCAAT+TGG + chr4_1:85423109-85423128 None:intergenic 25.0%
! ATTCATATCAGTTTCCAAAT+GGG + chr4_1:85423253-85423272 None:intergenic 25.0%
! AATTCATATCAGTTTCCAAA+TGG + chr4_1:85423254-85423273 None:intergenic 25.0%
!! AACTGATATGAATTTGTTCT+TGG - chr4_1:85423260-85423279 Msa0580370:CDS 25.0%
!!! ATTCTAGTTCTATAAATTGC+TGG + chr4_1:85423528-85423547 None:intergenic 25.0%
! TCAGATAATGTCATATTCTA+AGG - chr4_1:85423754-85423773 Msa0580370:intron 25.0%
!! GGAACTTCATCAAATATTTT+TGG - chr4_1:85424086-85424105 Msa0580370:CDS 25.0%
!! GATTATACTTTTGCTTATTC+TGG - chr4_1:85424260-85424279 Msa0580370:exon 25.0%
! GCACAATATATGATAACATA+AGG + chr4_1:85424456-85424475 None:intergenic 25.0%
!!! TTTTTATGAGTTGGGAAAAT+GGG + chr4_1:85422805-85422824 None:intergenic 25.0%
!!! TTTTTTATGAGTTGGGAAAA+TGG + chr4_1:85422806-85422825 None:intergenic 25.0%
! CAAATCTCACAAAATCAAAA+AGG - chr4_1:85422937-85422956 Msa0580370:three_prime_UTR 25.0%
! TCATTCATCTTTGATCAATT+GGG + chr4_1:85423108-85423127 None:intergenic 25.0%
! ATCATTCATCTTTGATCAAT+TGG + chr4_1:85423109-85423128 None:intergenic 25.0%
! ATTCATATCAGTTTCCAAAT+GGG + chr4_1:85423253-85423272 None:intergenic 25.0%
! AATTCATATCAGTTTCCAAA+TGG + chr4_1:85423254-85423273 None:intergenic 25.0%
!! AACTGATATGAATTTGTTCT+TGG - chr4_1:85423260-85423279 Msa0580370:CDS 25.0%
!!! ATTCTAGTTCTATAAATTGC+TGG + chr4_1:85423528-85423547 None:intergenic 25.0%
! TCAGATAATGTCATATTCTA+AGG - chr4_1:85423754-85423773 Msa0580370:intron 25.0%
!! GGAACTTCATCAAATATTTT+TGG - chr4_1:85424086-85424105 Msa0580370:CDS 25.0%
!! GATTATACTTTTGCTTATTC+TGG - chr4_1:85424260-85424279 Msa0580370:exon 25.0%
! GCACAATATATGATAACATA+AGG + chr4_1:85424456-85424475 None:intergenic 25.0%
!!! GTGAAGGTTTTTTATGAGTT+GGG + chr4_1:85422813-85422832 None:intergenic 30.0%
!!! AGTGAAGGTTTTTTATGAGT+TGG + chr4_1:85422814-85422833 None:intergenic 30.0%
TGAATATTGAAAGGAAGTGA+AGG + chr4_1:85422829-85422848 None:intergenic 30.0%
!! GGAAATTTTTGAGGAATCTA+GGG + chr4_1:85422868-85422887 None:intergenic 30.0%
!! AGGAAATTTTTGAGGAATCT+AGG + chr4_1:85422869-85422888 None:intergenic 30.0%
! GATTGAGAAGGAAATTTTTG+AGG + chr4_1:85422877-85422896 None:intergenic 30.0%
ATTTGAGAGAAGAGAGAAAA+AGG + chr4_1:85422922-85422941 None:intergenic 30.0%
CTTTGATCAATTGGGTATAA+AGG + chr4_1:85423100-85423119 None:intergenic 30.0%
! TATGAATTTGTTCTTGGAAG+AGG - chr4_1:85423266-85423285 Msa0580370:CDS 30.0%
TGAGAAAGTAAGAACAGAAA+TGG - chr4_1:85423290-85423309 Msa0580370:CDS 30.0%
GAGAAAGTAAGAACAGAAAT+GGG - chr4_1:85423291-85423310 Msa0580370:CDS 30.0%
!! TGAAGCTTTGAAAGAATTGA+GGG - chr4_1:85423380-85423399 Msa0580370:CDS 30.0%
TGAAGAAAGCAAAGTGTATT+AGG - chr4_1:85423433-85423452 Msa0580370:CDS 30.0%
! ACTAGAATTGCTGTTACTAA+TGG - chr4_1:85423540-85423559 Msa0580370:intron 30.0%
!!! TCTTCTGCTTTTTTTCTTTC+TGG - chr4_1:85423624-85423643 Msa0580370:intron 30.0%
AAACCTTGTATGTTACAACA+GGG - chr4_1:85423832-85423851 Msa0580370:CDS 30.0%
AGAAGATATTATACAGTGAC+AGG - chr4_1:85423898-85423917 Msa0580370:CDS 30.0%
GAAGATATTATACAGTGACA+GGG - chr4_1:85423899-85423918 Msa0580370:CDS 30.0%
AAGATATTATACAGTGACAG+GGG - chr4_1:85423900-85423919 Msa0580370:CDS 30.0%
GAGATGATGAAAGTTTCTTA+GGG - chr4_1:85423965-85423984 Msa0580370:CDS 30.0%
AGAGATTGAGAAGAGTTTAT+TGG - chr4_1:85424065-85424084 Msa0580370:CDS 30.0%
!! ATTTTTGGATATGGCTGTTA+TGG - chr4_1:85424101-85424120 Msa0580370:CDS 30.0%
GCTTCTCATTATGTTAAAGA+TGG - chr4_1:85424174-85424193 Msa0580370:CDS 30.0%
!! TAGAATTGGTCTTGTTTGAT+TGG - chr4_1:85424578-85424597 Msa0580370:five_prime_UTR 30.0%
!!! GTGAAGGTTTTTTATGAGTT+GGG + chr4_1:85422813-85422832 None:intergenic 30.0%
!!! AGTGAAGGTTTTTTATGAGT+TGG + chr4_1:85422814-85422833 None:intergenic 30.0%
TGAATATTGAAAGGAAGTGA+AGG + chr4_1:85422829-85422848 None:intergenic 30.0%
!! GGAAATTTTTGAGGAATCTA+GGG + chr4_1:85422868-85422887 None:intergenic 30.0%
!! AGGAAATTTTTGAGGAATCT+AGG + chr4_1:85422869-85422888 None:intergenic 30.0%
! GATTGAGAAGGAAATTTTTG+AGG + chr4_1:85422877-85422896 None:intergenic 30.0%
ATTTGAGAGAAGAGAGAAAA+AGG + chr4_1:85422922-85422941 None:intergenic 30.0%
CTTTGATCAATTGGGTATAA+AGG + chr4_1:85423100-85423119 None:intergenic 30.0%
! TATGAATTTGTTCTTGGAAG+AGG - chr4_1:85423266-85423285 Msa0580370:CDS 30.0%
TGAGAAAGTAAGAACAGAAA+TGG - chr4_1:85423290-85423309 Msa0580370:CDS 30.0%
GAGAAAGTAAGAACAGAAAT+GGG - chr4_1:85423291-85423310 Msa0580370:CDS 30.0%
!! TGAAGCTTTGAAAGAATTGA+GGG - chr4_1:85423380-85423399 Msa0580370:CDS 30.0%
TGAAGAAAGCAAAGTGTATT+AGG - chr4_1:85423433-85423452 Msa0580370:CDS 30.0%
! ACTAGAATTGCTGTTACTAA+TGG - chr4_1:85423540-85423559 Msa0580370:intron 30.0%
!!! TCTTCTGCTTTTTTTCTTTC+TGG - chr4_1:85423624-85423643 Msa0580370:intron 30.0%
AAACCTTGTATGTTACAACA+GGG - chr4_1:85423832-85423851 Msa0580370:CDS 30.0%
AGAAGATATTATACAGTGAC+AGG - chr4_1:85423898-85423917 Msa0580370:CDS 30.0%
GAAGATATTATACAGTGACA+GGG - chr4_1:85423899-85423918 Msa0580370:CDS 30.0%
AAGATATTATACAGTGACAG+GGG - chr4_1:85423900-85423919 Msa0580370:CDS 30.0%
GAGATGATGAAAGTTTCTTA+GGG - chr4_1:85423965-85423984 Msa0580370:CDS 30.0%
AGAGATTGAGAAGAGTTTAT+TGG - chr4_1:85424065-85424084 Msa0580370:CDS 30.0%
!! ATTTTTGGATATGGCTGTTA+TGG - chr4_1:85424101-85424120 Msa0580370:CDS 30.0%
GCTTCTCATTATGTTAAAGA+TGG - chr4_1:85424174-85424193 Msa0580370:CDS 30.0%
!! TAGAATTGGTCTTGTTTGAT+TGG - chr4_1:85424578-85424597 Msa0580370:five_prime_UTR 30.0%
! GATGAAGTTGATTTAGAAGC+TGG - chr4_1:85423183-85423202 Msa0580370:CDS 35.0%
!! CTGAAGCTTTGAAAGAATTG+AGG - chr4_1:85423379-85423398 Msa0580370:CDS 35.0%
AGCAGAAGAGAAATTGACAA+GGG + chr4_1:85423613-85423632 None:intergenic 35.0%
AAGCAGAAGAGAAATTGACA+AGG + chr4_1:85423614-85423633 None:intergenic 35.0%
GAAACCTTGTATGTTACAAC+AGG - chr4_1:85423831-85423850 Msa0580370:CDS 35.0%
AACCTTGTATGTTACAACAG+GGG - chr4_1:85423833-85423852 Msa0580370:CDS 35.0%
AGCGAATACAAAGAAACAGT+AGG - chr4_1:85423874-85423893 Msa0580370:CDS 35.0%
GCGAATACAAAGAAACAGTA+GGG - chr4_1:85423875-85423894 Msa0580370:CDS 35.0%
GGAGATGATGAAAGTTTCTT+AGG - chr4_1:85423964-85423983 Msa0580370:CDS 35.0%
TGATGAAAGTTTCTTAGGGA+AGG - chr4_1:85423969-85423988 Msa0580370:CDS 35.0%
GATGGTACAAAGAATCTTCA+CGG - chr4_1:85424192-85424211 Msa0580370:CDS 35.0%
AACAGTATCAGAAAAGTAGC+AGG - chr4_1:85424220-85424239 Msa0580370:CDS 35.0%
! GATGAAGTTGATTTAGAAGC+TGG - chr4_1:85423183-85423202 Msa0580370:CDS 35.0%
!! CTGAAGCTTTGAAAGAATTG+AGG - chr4_1:85423379-85423398 Msa0580370:CDS 35.0%
AGCAGAAGAGAAATTGACAA+GGG + chr4_1:85423613-85423632 None:intergenic 35.0%
AAGCAGAAGAGAAATTGACA+AGG + chr4_1:85423614-85423633 None:intergenic 35.0%
GAAACCTTGTATGTTACAAC+AGG - chr4_1:85423831-85423850 Msa0580370:CDS 35.0%
AACCTTGTATGTTACAACAG+GGG - chr4_1:85423833-85423852 Msa0580370:CDS 35.0%
AGCGAATACAAAGAAACAGT+AGG - chr4_1:85423874-85423893 Msa0580370:CDS 35.0%
GCGAATACAAAGAAACAGTA+GGG - chr4_1:85423875-85423894 Msa0580370:CDS 35.0%
GGAGATGATGAAAGTTTCTT+AGG - chr4_1:85423964-85423983 Msa0580370:CDS 35.0%
TGATGAAAGTTTCTTAGGGA+AGG - chr4_1:85423969-85423988 Msa0580370:CDS 35.0%
GATGGTACAAAGAATCTTCA+CGG - chr4_1:85424192-85424211 Msa0580370:CDS 35.0%
AACAGTATCAGAAAAGTAGC+AGG - chr4_1:85424220-85424239 Msa0580370:CDS 35.0%
AGTTGGGAAAATGGGTCTAA+CGG + chr4_1:85422797-85422816 None:intergenic 40.0%
!! GAAGCTGGTCTTCAAAAACA+AGG - chr4_1:85423198-85423217 Msa0580370:CDS 40.0%
AAGATCTTCACTGACCCATT+TGG - chr4_1:85423236-85423255 Msa0580370:CDS 40.0%
TAGGACTCAACTCGAAGAAA+TGG - chr4_1:85423452-85423471 Msa0580370:CDS 40.0%
AGACTCTCTGGACTTAAAGA+TGG - chr4_1:85423498-85423517 Msa0580370:CDS 40.0%
GAAACTCAAGGAGCTTATGA+TGG - chr4_1:85423572-85423591 Msa0580370:intron 40.0%
GCAATACAAGAACATGGAAG+AGG - chr4_1:85423991-85424010 Msa0580370:CDS 40.0%
ACAAGAACATGGAAGAGGAA+AGG - chr4_1:85423996-85424015 Msa0580370:CDS 40.0%
TGAAGCACAAGGTGAGAAAA+TGG - chr4_1:85424125-85424144 Msa0580370:CDS 40.0%
ATCAGAAAAGTAGCAGGAAG+TGG - chr4_1:85424226-85424245 Msa0580370:CDS 40.0%
CTGCTGAAACTCACTACAAT+GGG + chr4_1:85424303-85424322 None:intergenic 40.0%
ACTGCTGAAACTCACTACAA+TGG + chr4_1:85424304-85424323 None:intergenic 40.0%
AGTCGTACACAACTCAACAA+AGG + chr4_1:85424416-85424435 None:intergenic 40.0%
AGTTGGGAAAATGGGTCTAA+CGG + chr4_1:85422797-85422816 None:intergenic 40.0%
!! GAAGCTGGTCTTCAAAAACA+AGG - chr4_1:85423198-85423217 Msa0580370:CDS 40.0%
AAGATCTTCACTGACCCATT+TGG - chr4_1:85423236-85423255 Msa0580370:CDS 40.0%
TAGGACTCAACTCGAAGAAA+TGG - chr4_1:85423452-85423471 Msa0580370:CDS 40.0%
AGACTCTCTGGACTTAAAGA+TGG - chr4_1:85423498-85423517 Msa0580370:CDS 40.0%
GAAACTCAAGGAGCTTATGA+TGG - chr4_1:85423572-85423591 Msa0580370:intron 40.0%
GCAATACAAGAACATGGAAG+AGG - chr4_1:85423991-85424010 Msa0580370:CDS 40.0%
ACAAGAACATGGAAGAGGAA+AGG - chr4_1:85423996-85424015 Msa0580370:CDS 40.0%
TGAAGCACAAGGTGAGAAAA+TGG - chr4_1:85424125-85424144 Msa0580370:CDS 40.0%
ATCAGAAAAGTAGCAGGAAG+TGG - chr4_1:85424226-85424245 Msa0580370:CDS 40.0%
CTGCTGAAACTCACTACAAT+GGG + chr4_1:85424303-85424322 None:intergenic 40.0%
ACTGCTGAAACTCACTACAA+TGG + chr4_1:85424304-85424323 None:intergenic 40.0%
AGTCGTACACAACTCAACAA+AGG + chr4_1:85424416-85424435 None:intergenic 40.0%
! GAAAGAAGCGCAGATTGAGA+AGG + chr4_1:85422889-85422908 None:intergenic 45.0%
!! GCTGGTCTTCAAAAACAAGG+TGG - chr4_1:85423201-85423220 Msa0580370:CDS 45.0%
GCTGCTAATAGAAGACTCTC+TGG - chr4_1:85423486-85423505 Msa0580370:CDS 45.0%
! TGGCTTGCGTAAGAAACTCA+AGG - chr4_1:85423560-85423579 Msa0580370:intron 45.0%
! GGAGCTTATGATGGAGTTTC+AGG - chr4_1:85423581-85423600 Msa0580370:intron 45.0%
AGCCCCTGTTGTAACATACA+AGG + chr4_1:85423838-85423857 None:intergenic 45.0%
GGGAAGGCAATACAAGAACA+TGG - chr4_1:85423985-85424004 Msa0580370:CDS 45.0%
ACATGGAAGAGGAAAGGTTC+TGG - chr4_1:85424002-85424021 Msa0580370:CDS 45.0%
!! AGGAAAGGTTCTGGAAACTG+TGG - chr4_1:85424011-85424030 Msa0580370:CDS 45.0%
GCTGTTATGGTTGAAGCACA+AGG - chr4_1:85424114-85424133 Msa0580370:CDS 45.0%
! GAAAGAAGCGCAGATTGAGA+AGG + chr4_1:85422889-85422908 None:intergenic 45.0%
!! GCTGGTCTTCAAAAACAAGG+TGG - chr4_1:85423201-85423220 Msa0580370:CDS 45.0%
GCTGCTAATAGAAGACTCTC+TGG - chr4_1:85423486-85423505 Msa0580370:CDS 45.0%
! TGGCTTGCGTAAGAAACTCA+AGG - chr4_1:85423560-85423579 Msa0580370:intron 45.0%
! GGAGCTTATGATGGAGTTTC+AGG - chr4_1:85423581-85423600 Msa0580370:intron 45.0%
AGCCCCTGTTGTAACATACA+AGG + chr4_1:85423838-85423857 None:intergenic 45.0%
GGGAAGGCAATACAAGAACA+TGG - chr4_1:85423985-85424004 Msa0580370:CDS 45.0%
ACATGGAAGAGGAAAGGTTC+TGG - chr4_1:85424002-85424021 Msa0580370:CDS 45.0%
!! AGGAAAGGTTCTGGAAACTG+TGG - chr4_1:85424011-85424030 Msa0580370:CDS 45.0%
GCTGTTATGGTTGAAGCACA+AGG - chr4_1:85424114-85424133 Msa0580370:CDS 45.0%
GTATGTTACAACAGGGGCTG+AGG - chr4_1:85423839-85423858 Msa0580370:CDS 50.0%
AGGGGAACATGCTGATGAAG+AGG - chr4_1:85423918-85423937 Msa0580370:CDS 50.0%
AGCAGGAAGTGGATGTGCAT+TGG - chr4_1:85424237-85424256 Msa0580370:CDS 50.0%
GCAGGAAGTGGATGTGCATT+GGG - chr4_1:85424238-85424257 Msa0580370:CDS 50.0%
GTATGTTACAACAGGGGCTG+AGG - chr4_1:85423839-85423858 Msa0580370:CDS 50.0%
AGGGGAACATGCTGATGAAG+AGG - chr4_1:85423918-85423937 Msa0580370:CDS 50.0%
AGCAGGAAGTGGATGTGCAT+TGG - chr4_1:85424237-85424256 Msa0580370:CDS 50.0%
GCAGGAAGTGGATGTGCATT+GGG - chr4_1:85424238-85424257 Msa0580370:CDS 50.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 85422784 85424602 85422784 ID=Msa0580370;Name=Msa0580370
chr4_1 mRNA 85422784 85424602 85422784 ID=Msa0580370-mRNA-1;Parent=Msa0580370;Name=Msa0580370-mRNA-1;_AED=0.02;_eAED=0.02;_QI=204|1|1|1|0.5|0.33|3|273|319
chr4_1 exon 85422784 85423533 85422784 ID=Msa0580370-mRNA-1:exon:31419;Parent=Msa0580370-mRNA-1
chr4_1 exon 85423784 85424295 85423784 ID=Msa0580370-mRNA-1:exon:31418;Parent=Msa0580370-mRNA-1
chr4_1 exon 85424428 85424602 85424428 ID=Msa0580370-mRNA-1:exon:31417;Parent=Msa0580370-mRNA-1
chr4_1 five_prime_UTR 85424428 85424602 85424428 ID=Msa0580370-mRNA-1:five_prime_utr;Parent=Msa0580370-mRNA-1
chr4_1 five_prime_UTR 85424267 85424295 85424267 ID=Msa0580370-mRNA-1:five_prime_utr;Parent=Msa0580370-mRNA-1
chr4_1 CDS 85423784 85424266 85423784 ID=Msa0580370-mRNA-1:cds;Parent=Msa0580370-mRNA-1
chr4_1 CDS 85423057 85423533 85423057 ID=Msa0580370-mRNA-1:cds;Parent=Msa0580370-mRNA-1
chr4_1 three_prime_UTR 85422784 85423056 85422784 ID=Msa0580370-mRNA-1:three_prime_utr;Parent=Msa0580370-mRNA-1
Gene Sequence

>Msa0580370

ATGAATGATCTAATGACAAAATCATTCACCAACTATGTTGATCTAAAAAAAGCAGCTATGAAAGATGAAGTTGATTTAGAAGCTGGTCTTCAAAAACAAGGTGGTGTTGAATTAACAAGATCTTCACTGACCCATTTGGAAACTGATATGAATTTGTTCTTGGAAGAGGCTGAGAAAGTAAGAACAGAAATGGGTGAAATTCGCGATATACTAACAAAGCTTGAACAAGCAAATGAAGAGAGCAAGAGTCTTCACAAAACTGAAGCTTTGAAAGAATTGAGGGAAAGAATTAATACTGATATTGTAACAGTTTTGAAGAAAGCAAAGTGTATTAGGACTCAACTCGAAGAAATGGATCGTGCTAATGCTGCTAATAGAAGACTCTCTGGACTTAAAGATGGTTCACCAGCAATTTATAGAACTAGAATTGCTGTTACTAATGGCTTGCGTAAGAAACTCAAGGAGCTTATGATGGAGTTTCAGGGGCTGAGGCAGAAAATGATGAGCGAATACAAAGAAACAGTAGGGAGAAGATATTATACAGTGACAGGGGAACATGCTGATGAAGAGGTAATTGAGAAGATAATATCAAATGGAGATGATGAAAGTTTCTTAGGGAAGGCAATACAAGAACATGGAAGAGGAAAGGTTCTGGAAACTGTGGTTGAGATACAAGACAGACATGATGCTGCTAAAGAGATTGAGAAGAGTTTATTGGAACTTCATCAAATATTTTTGGATATGGCTGTTATGGTTGAAGCACAAGGTGAGAAAATGGATGATATTGAACATCATGTTCTTCATGCTTCTCATTATGTTAAAGATGGTACAAAGAATCTTCACGGTGCTAAACAGTATCAGAAAAGTAGCAGGAAGTGGATGTGCATTGGGATTATACTTTTGCTTATTCTGGTTCTCATCATTGTTATTCCCATTGTAGTGAGTTTCAGCAGTTCTTGA

Protein sequence

>Msa0580370

MNDLMTKSFTNYVDLKKAAMKDEVDLEAGLQKQGGVELTRSSLTHLETDMNLFLEEAEKVRTEMGEIRDILTKLEQANEESKSLHKTEALKELRERINTDIVTVLKKAKCIRTQLEEMDRANAANRRLSGLKDGSPAIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMSEYKETVGRRYYTVTGEHADEEVIEKIISNGDDESFLGKAIQEHGRGKVLETVVEIQDRHDAAKEIEKSLLELHQIFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLHGAKQYQKSSRKWMCIGIILLLILVLIIVIPIVVSFSSS*