AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1132840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1132840 MtrunA17_Chr5g0398891 99.062 320 2 1 1 319 1 320 0.0 640
Msa1132840 MtrunA17_Chr4g0048121 50.508 295 129 4 1 295 1 278 7.45e-101 298
Msa1132840 MtrunA17_Chr2g0281201 53.279 244 113 1 73 316 10 252 8.44e-97 286
Msa1132840 MtrunA17_Chr1g0177121 42.953 298 154 3 1 295 1 285 1.63e-86 262
Msa1132840 MtrunA17_Chr1g0177131 48.988 247 125 1 49 295 44 289 2.35e-84 258
Msa1132840 MtrunA17_Chr7g0267551 46.122 245 131 1 53 297 31 274 8.69e-78 239
Msa1132840 MtrunA17_Chr5g0404401 46.128 297 136 6 1 294 1 276 3.39e-77 238
Msa1132840 MtrunA17_Chr2g0322801 44.781 297 148 5 1 295 1 283 1.27e-75 234
Msa1132840 MtrunA17_Chr6g0461261 41.077 297 158 3 1 297 1 280 7.67e-73 227
Msa1132840 MtrunA17_Chr8g0370611 41.221 131 64 3 1 129 1 120 5.92e-20 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1132840 AT1G08560.1 65.312 320 100 5 1 319 1 310 6.53e-133 380
Msa1132840 AT1G61290.1 48.562 313 139 4 1 311 1 293 7.25e-104 306
Msa1132840 AT1G61290.2 48.562 313 139 4 1 311 1 293 7.25e-104 306
Msa1132840 AT4G03330.1 47.937 315 149 3 1 315 1 300 1.38e-94 283
Msa1132840 AT1G11250.1 47.458 295 132 4 1 295 1 272 9.90e-92 275
Msa1132840 AT3G11820.1 50.575 261 128 1 35 295 29 288 2.95e-88 268
Msa1132840 AT3G11820.2 52.632 247 116 1 49 295 12 257 7.62e-88 266
Msa1132840 AT3G52400.1 43.624 298 158 3 1 297 1 289 5.05e-80 247
Msa1132840 AT2G18260.2 38.730 315 182 4 1 315 1 304 1.02e-70 222
Msa1132840 AT2G18260.1 38.730 315 182 4 1 315 1 304 1.02e-70 222
Msa1132840 AT3G03800.2 43.019 265 150 1 53 317 38 301 5.76e-68 215
Msa1132840 AT3G03800.1 43.019 265 150 1 53 317 38 301 5.76e-68 215
Msa1132840 AT5G08080.1 43.729 295 149 4 1 295 1 278 2.00e-66 211
Msa1132840 AT5G08080.4 43.729 295 149 4 1 295 1 278 2.00e-66 211
Msa1132840 AT5G08080.3 43.434 297 158 6 1 295 1 289 8.16e-65 207
Msa1132840 AT5G08080.5 39.171 217 115 4 1 217 1 200 1.25e-31 118
Msa1132840 AT5G08080.2 39.171 217 115 4 1 217 1 200 1.25e-31 118

Find 61 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGATTGAGAAGAGTTTAT+TGG 0.159342 7_3:-85685324 Msa1132840:CDS
GGAGATGATGAAAGTTTCTT+AGG 0.183110 7_3:-85685425 Msa1132840:CDS
GGAGCTTATGATGGAGTTTC+AGG 0.211805 7_3:-85685808 Msa1132840:intron
CTTTGATCAATTGGGTATAA+AGG 0.240284 7_3:+85686292 None:intergenic
ATCATTCATCTTTGATCAAT+TGG 0.253149 7_3:+85686283 None:intergenic
ATTTGAGAGAAGAGAGAAAA+AGG 0.256376 7_3:+85686470 None:intergenic
TGAAGAAAGCAAAGTGTATT+AGG 0.275539 7_3:-85685956 Msa1132840:CDS
ATAATAATTGTTCTATATAT+TGG 0.292414 7_3:-85684848 Msa1132840:three_prime_UTR
CAAATCTCACAAAATCAAAA+AGG 0.336260 7_3:-85686452 Msa1132840:intron
AACTGATATGAATTTGTTCT+TGG 0.340603 7_3:-85686129 Msa1132840:CDS
TAGAATTGGTCTTGTTTGAT+TGG 0.344183 7_3:-85684808 Msa1132840:three_prime_UTR
ACTAGAATTGCTGTTACTAA+TGG 0.388743 7_3:-85685849 Msa1132840:CDS
ACATGGAAGAGGAAAGGTTC+TGG 0.392183 7_3:-85685387 Msa1132840:CDS
AAGATCTTCACTGACCCATT+TGG 0.394651 7_3:-85686153 Msa1132840:CDS
AATTCATATCAGTTTCCAAA+TGG 0.400693 7_3:+85686138 None:intergenic
TGAGAAAGTAAGAACAGAAA+TGG 0.403034 7_3:-85686099 Msa1132840:CDS
ATTCTAGTTCTATAAATTGC+TGG 0.404484 7_3:+85685864 None:intergenic
TAGGACTCAACTCGAAGAAA+TGG 0.407461 7_3:-85685937 Msa1132840:CDS
TCATTCATCTTTGATCAATT+GGG 0.411410 7_3:+85686284 None:intergenic
TTACAATTTAGAAATAGAAT+TGG 0.412578 7_3:-85684822 Msa1132840:three_prime_UTR
TGAAGCACAAGGTGAGAAAA+TGG 0.413624 7_3:-85685264 Msa1132840:CDS
GATGAAGTTGATTTAGAAGC+TGG 0.444831 7_3:-85686206 Msa1132840:CDS
GCAGGAAGTGGATGTGCATT+GGG 0.446829 7_3:-85685151 Msa1132840:CDS
AGAAGATATTATACAGTGAC+AGG 0.449572 7_3:-85685491 Msa1132840:CDS
CTGCTGAAACTCACTACAAT+GGG 0.453019 7_3:+85685089 None:intergenic
CTGAAGCTTTGAAAGAATTG+AGG 0.453110 7_3:-85686010 Msa1132840:CDS
TTCATATTACACATAAAAGA+AGG 0.454819 7_3:+85685056 None:intergenic
GCTGCTAATAGAAGACTCTC+TGG 0.458709 7_3:-85685903 Msa1132840:CDS
ATTCATATCAGTTTCCAAAT+GGG 0.460811 7_3:+85686139 None:intergenic
GCTTCTCATTATGTTAAAGA+TGG 0.464968 7_3:-85685215 Msa1132840:CDS
TGAAGCTTTGAAAGAATTGA+GGG 0.466131 7_3:-85686009 Msa1132840:CDS
GAGATGATGAAAGTTTCTTA+GGG 0.469669 7_3:-85685424 Msa1132840:CDS
TATGAATTTGTTCTTGGAAG+AGG 0.470619 7_3:-85686123 Msa1132840:CDS
AGCAGGAAGTGGATGTGCAT+TGG 0.476019 7_3:-85685152 Msa1132840:CDS
ATTGAGAAGATAATATCAAA+TGG 0.477269 7_3:-85685446 Msa1132840:CDS
ATCAGAAAAGTAGCAGGAAG+TGG 0.480407 7_3:-85685163 Msa1132840:CDS
CAATATATGATAACATAGTA+AGG 0.498663 7_3:+85684936 None:intergenic
AACAGTATCAGAAAAGTAGC+AGG 0.504319 7_3:-85685169 Msa1132840:CDS
GAAACTCAAGGAGCTTATGA+TGG 0.521896 7_3:-85685817 Msa1132840:CDS
GATGGTACAAAGAATCTTCA+CGG 0.525784 7_3:-85685197 Msa1132840:CDS
GTATGTTACAACAGGGGCTG+AGG 0.531696 7_3:-85685550 Msa1132840:intron
GAGAAAGTAAGAACAGAAAT+GGG 0.536281 7_3:-85686098 Msa1132840:CDS
TGATGAAAGTTTCTTAGGGA+AGG 0.540453 7_3:-85685420 Msa1132840:CDS
AGACTCTCTGGACTTAAAGA+TGG 0.542560 7_3:-85685891 Msa1132840:CDS
TGAATATTGAAAGGAAGTGA+AGG 0.545573 7_3:+85686563 None:intergenic
AAGTAGATTTGAATATTGAA+AGG 0.547316 7_3:+85686554 None:intergenic
GCAATACAAGAACATGGAAG+AGG 0.566682 7_3:-85685398 Msa1132840:CDS
ACTGCTGAAACTCACTACAA+TGG 0.567938 7_3:+85685088 None:intergenic
AGCGAATACAAAGAAACAGT+AGG 0.587219 7_3:-85685515 Msa1132840:CDS
GCGAATACAAAGAAACAGTA+GGG 0.593645 7_3:-85685514 Msa1132840:CDS
TGGCTTGCGTAAGAAACTCA+AGG 0.596215 7_3:-85685829 Msa1132840:CDS
GAAAGAAGCGCAGATTGAGA+AGG 0.596374 7_3:+85686503 None:intergenic
AGTTGGGAAAATGGGTCTAA+CGG 0.597842 7_3:+85686595 None:intergenic
AGGGGAACATGCTGATGAAG+AGG 0.599762 7_3:-85685471 Msa1132840:CDS
ACAAGAACATGGAAGAGGAA+AGG 0.606969 7_3:-85685393 Msa1132840:CDS
GGGAAGGCAATACAAGAACA+TGG 0.609551 7_3:-85685404 Msa1132840:CDS
AGGAAAGGTTCTGGAAACTG+TGG 0.660613 7_3:-85685378 Msa1132840:CDS
AGTCGTACACAACTCAACAA+AGG 0.678381 7_3:+85684976 None:intergenic
GAAGATATTATACAGTGACA+GGG 0.694420 7_3:-85685490 Msa1132840:CDS
GCTGTTATGGTTGAAGCACA+AGG 0.705464 7_3:-85685275 Msa1132840:CDS
AAGATATTATACAGTGACAG+GGG 0.720898 7_3:-85685489 Msa1132840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATTGTTCTATATAT+TGG - chr7_3:85686563-85686582 Msa1132840:five_prime_UTR 10.0%
!! ATAATAATTGTTCTATATAT+TGG - chr7_3:85686563-85686582 Msa1132840:five_prime_UTR 10.0%
!! TAAAAAGAATATAAATGTGA+AGG + chr7_3:85685084-85685103 None:intergenic 15.0%
!!! GAATTTATGTATCAATTTTA+AGG - chr7_3:85685696-85685715 Msa1132840:intron 15.0%
!!! GAAATTAGTCTTATTTAATA+AGG + chr7_3:85685758-85685777 None:intergenic 15.0%
!! TTACAATTTAGAAATAGAAT+TGG - chr7_3:85686589-85686608 Msa1132840:five_prime_UTR 15.0%
!! TAAAAAGAATATAAATGTGA+AGG + chr7_3:85685084-85685103 None:intergenic 15.0%
!!! GAATTTATGTATCAATTTTA+AGG - chr7_3:85685696-85685715 Msa1132840:intron 15.0%
!!! GAAATTAGTCTTATTTAATA+AGG + chr7_3:85685758-85685777 None:intergenic 15.0%
!! TTACAATTTAGAAATAGAAT+TGG - chr7_3:85686589-85686608 Msa1132840:five_prime_UTR 15.0%
!! AAGTAGATTTGAATATTGAA+AGG + chr7_3:85684860-85684879 None:intergenic 20.0%
!! AGATTAACATACAAAAATTG+TGG + chr7_3:85685052-85685071 None:intergenic 20.0%
!!! TATATTCTTTTTATCTATGC+AGG - chr7_3:85685091-85685110 Msa1132840:CDS 20.0%
!!! TTTTTTTAGATCAACATAGT+TGG + chr7_3:85685173-85685192 None:intergenic 20.0%
!! ATTGAGAAGATAATATCAAA+TGG - chr7_3:85685965-85685984 Msa1132840:CDS 20.0%
!!! TCATCAAATATTTTTGGATA+TGG - chr7_3:85686114-85686133 Msa1132840:CDS 20.0%
!! TTCATATTACACATAAAAGA+AGG + chr7_3:85686358-85686377 None:intergenic 20.0%
!! CAATATATGATAACATAGTA+AGG + chr7_3:85686478-85686497 None:intergenic 20.0%
!! AAGTAGATTTGAATATTGAA+AGG + chr7_3:85684860-85684879 None:intergenic 20.0%
!! AGATTAACATACAAAAATTG+TGG + chr7_3:85685052-85685071 None:intergenic 20.0%
!!! TATATTCTTTTTATCTATGC+AGG - chr7_3:85685091-85685110 Msa1132840:CDS 20.0%
!!! TTTTTTTAGATCAACATAGT+TGG + chr7_3:85685173-85685192 None:intergenic 20.0%
!! ATTGAGAAGATAATATCAAA+TGG - chr7_3:85685965-85685984 Msa1132840:CDS 20.0%
!!! TCATCAAATATTTTTGGATA+TGG - chr7_3:85686114-85686133 Msa1132840:CDS 20.0%
!! TTCATATTACACATAAAAGA+AGG + chr7_3:85686358-85686377 None:intergenic 20.0%
!! CAATATATGATAACATAGTA+AGG + chr7_3:85686478-85686497 None:intergenic 20.0%
!!! TTTTTATGAGTTGGGAAAAT+GGG + chr7_3:85684827-85684846 None:intergenic 25.0%
!!! TTTTTTATGAGTTGGGAAAA+TGG + chr7_3:85684828-85684847 None:intergenic 25.0%
! CAAATCTCACAAAATCAAAA+AGG - chr7_3:85684959-85684978 Msa1132840:three_prime_UTR 25.0%
! TCATTCATCTTTGATCAATT+GGG + chr7_3:85685130-85685149 None:intergenic 25.0%
! ATCATTCATCTTTGATCAAT+TGG + chr7_3:85685131-85685150 None:intergenic 25.0%
! ATTCATATCAGTTTCCAAAT+GGG + chr7_3:85685275-85685294 None:intergenic 25.0%
! AATTCATATCAGTTTCCAAA+TGG + chr7_3:85685276-85685295 None:intergenic 25.0%
!! AACTGATATGAATTTGTTCT+TGG - chr7_3:85685282-85685301 Msa1132840:CDS 25.0%
!!! ATTCTAGTTCTATAAATTGC+TGG + chr7_3:85685550-85685569 None:intergenic 25.0%
! TCAGATAATGTCATATTCTA+AGG - chr7_3:85685776-85685795 Msa1132840:intron 25.0%
!! GGAACTTCATCAAATATTTT+TGG - chr7_3:85686108-85686127 Msa1132840:CDS 25.0%
!! GATTATACTTTTGCTTATTC+TGG - chr7_3:85686282-85686301 Msa1132840:exon 25.0%
!!! TTTTTATGAGTTGGGAAAAT+GGG + chr7_3:85684827-85684846 None:intergenic 25.0%
!!! TTTTTTATGAGTTGGGAAAA+TGG + chr7_3:85684828-85684847 None:intergenic 25.0%
! CAAATCTCACAAAATCAAAA+AGG - chr7_3:85684959-85684978 Msa1132840:three_prime_UTR 25.0%
! TCATTCATCTTTGATCAATT+GGG + chr7_3:85685130-85685149 None:intergenic 25.0%
! ATCATTCATCTTTGATCAAT+TGG + chr7_3:85685131-85685150 None:intergenic 25.0%
! ATTCATATCAGTTTCCAAAT+GGG + chr7_3:85685275-85685294 None:intergenic 25.0%
! AATTCATATCAGTTTCCAAA+TGG + chr7_3:85685276-85685295 None:intergenic 25.0%
!! AACTGATATGAATTTGTTCT+TGG - chr7_3:85685282-85685301 Msa1132840:CDS 25.0%
!!! ATTCTAGTTCTATAAATTGC+TGG + chr7_3:85685550-85685569 None:intergenic 25.0%
! TCAGATAATGTCATATTCTA+AGG - chr7_3:85685776-85685795 Msa1132840:intron 25.0%
!! GGAACTTCATCAAATATTTT+TGG - chr7_3:85686108-85686127 Msa1132840:CDS 25.0%
!! GATTATACTTTTGCTTATTC+TGG - chr7_3:85686282-85686301 Msa1132840:exon 25.0%
!!! GTGAAGGTTTTTTATGAGTT+GGG + chr7_3:85684835-85684854 None:intergenic 30.0%
!!! AGTGAAGGTTTTTTATGAGT+TGG + chr7_3:85684836-85684855 None:intergenic 30.0%
TGAATATTGAAAGGAAGTGA+AGG + chr7_3:85684851-85684870 None:intergenic 30.0%
!! GGAAATTTTTGAGGAATCTA+GGG + chr7_3:85684890-85684909 None:intergenic 30.0%
!! AGGAAATTTTTGAGGAATCT+AGG + chr7_3:85684891-85684910 None:intergenic 30.0%
! GATTGAGAAGGAAATTTTTG+AGG + chr7_3:85684899-85684918 None:intergenic 30.0%
ATTTGAGAGAAGAGAGAAAA+AGG + chr7_3:85684944-85684963 None:intergenic 30.0%
CTTTGATCAATTGGGTATAA+AGG + chr7_3:85685122-85685141 None:intergenic 30.0%
! TATGAATTTGTTCTTGGAAG+AGG - chr7_3:85685288-85685307 Msa1132840:CDS 30.0%
TGAGAAAGTAAGAACAGAAA+TGG - chr7_3:85685312-85685331 Msa1132840:CDS 30.0%
GAGAAAGTAAGAACAGAAAT+GGG - chr7_3:85685313-85685332 Msa1132840:CDS 30.0%
!! TGAAGCTTTGAAAGAATTGA+GGG - chr7_3:85685402-85685421 Msa1132840:CDS 30.0%
TGAAGAAAGCAAAGTGTATT+AGG - chr7_3:85685455-85685474 Msa1132840:CDS 30.0%
! ACTAGAATTGCTGTTACTAA+TGG - chr7_3:85685562-85685581 Msa1132840:intron 30.0%
!!! TCTTCTGCTTTTTTTCTTTC+TGG - chr7_3:85685646-85685665 Msa1132840:intron 30.0%
AAACCTTGTATGTTACAACA+GGG - chr7_3:85685854-85685873 Msa1132840:CDS 30.0%
AGAAGATATTATACAGTGAC+AGG - chr7_3:85685920-85685939 Msa1132840:CDS 30.0%
GAAGATATTATACAGTGACA+GGG - chr7_3:85685921-85685940 Msa1132840:CDS 30.0%
AAGATATTATACAGTGACAG+GGG - chr7_3:85685922-85685941 Msa1132840:CDS 30.0%
GAGATGATGAAAGTTTCTTA+GGG - chr7_3:85685987-85686006 Msa1132840:CDS 30.0%
AGAGATTGAGAAGAGTTTAT+TGG - chr7_3:85686087-85686106 Msa1132840:CDS 30.0%
!! ATTTTTGGATATGGCTGTTA+TGG - chr7_3:85686123-85686142 Msa1132840:CDS 30.0%
GCTTCTCATTATGTTAAAGA+TGG - chr7_3:85686196-85686215 Msa1132840:CDS 30.0%
!! TAGAATTGGTCTTGTTTGAT+TGG - chr7_3:85686603-85686622 Msa1132840:five_prime_UTR 30.0%
!!! GTGAAGGTTTTTTATGAGTT+GGG + chr7_3:85684835-85684854 None:intergenic 30.0%
!!! AGTGAAGGTTTTTTATGAGT+TGG + chr7_3:85684836-85684855 None:intergenic 30.0%
TGAATATTGAAAGGAAGTGA+AGG + chr7_3:85684851-85684870 None:intergenic 30.0%
!! GGAAATTTTTGAGGAATCTA+GGG + chr7_3:85684890-85684909 None:intergenic 30.0%
!! AGGAAATTTTTGAGGAATCT+AGG + chr7_3:85684891-85684910 None:intergenic 30.0%
! GATTGAGAAGGAAATTTTTG+AGG + chr7_3:85684899-85684918 None:intergenic 30.0%
ATTTGAGAGAAGAGAGAAAA+AGG + chr7_3:85684944-85684963 None:intergenic 30.0%
CTTTGATCAATTGGGTATAA+AGG + chr7_3:85685122-85685141 None:intergenic 30.0%
! TATGAATTTGTTCTTGGAAG+AGG - chr7_3:85685288-85685307 Msa1132840:CDS 30.0%
TGAGAAAGTAAGAACAGAAA+TGG - chr7_3:85685312-85685331 Msa1132840:CDS 30.0%
GAGAAAGTAAGAACAGAAAT+GGG - chr7_3:85685313-85685332 Msa1132840:CDS 30.0%
!! TGAAGCTTTGAAAGAATTGA+GGG - chr7_3:85685402-85685421 Msa1132840:CDS 30.0%
TGAAGAAAGCAAAGTGTATT+AGG - chr7_3:85685455-85685474 Msa1132840:CDS 30.0%
! ACTAGAATTGCTGTTACTAA+TGG - chr7_3:85685562-85685581 Msa1132840:intron 30.0%
!!! TCTTCTGCTTTTTTTCTTTC+TGG - chr7_3:85685646-85685665 Msa1132840:intron 30.0%
AAACCTTGTATGTTACAACA+GGG - chr7_3:85685854-85685873 Msa1132840:CDS 30.0%
AGAAGATATTATACAGTGAC+AGG - chr7_3:85685920-85685939 Msa1132840:CDS 30.0%
GAAGATATTATACAGTGACA+GGG - chr7_3:85685921-85685940 Msa1132840:CDS 30.0%
AAGATATTATACAGTGACAG+GGG - chr7_3:85685922-85685941 Msa1132840:CDS 30.0%
GAGATGATGAAAGTTTCTTA+GGG - chr7_3:85685987-85686006 Msa1132840:CDS 30.0%
AGAGATTGAGAAGAGTTTAT+TGG - chr7_3:85686087-85686106 Msa1132840:CDS 30.0%
!! ATTTTTGGATATGGCTGTTA+TGG - chr7_3:85686123-85686142 Msa1132840:CDS 30.0%
GCTTCTCATTATGTTAAAGA+TGG - chr7_3:85686196-85686215 Msa1132840:CDS 30.0%
!! TAGAATTGGTCTTGTTTGAT+TGG - chr7_3:85686603-85686622 Msa1132840:five_prime_UTR 30.0%
! GATGAAGTTGATTTAGAAGC+TGG - chr7_3:85685205-85685224 Msa1132840:CDS 35.0%
!! CTGAAGCTTTGAAAGAATTG+AGG - chr7_3:85685401-85685420 Msa1132840:CDS 35.0%
AGCAGAAGAGAAATTGACAA+GGG + chr7_3:85685635-85685654 None:intergenic 35.0%
AAGCAGAAGAGAAATTGACA+AGG + chr7_3:85685636-85685655 None:intergenic 35.0%
GAAACCTTGTATGTTACAAC+AGG - chr7_3:85685853-85685872 Msa1132840:CDS 35.0%
AACCTTGTATGTTACAACAG+GGG - chr7_3:85685855-85685874 Msa1132840:CDS 35.0%
AGCGAATACAAAGAAACAGT+AGG - chr7_3:85685896-85685915 Msa1132840:CDS 35.0%
GCGAATACAAAGAAACAGTA+GGG - chr7_3:85685897-85685916 Msa1132840:CDS 35.0%
GGAGATGATGAAAGTTTCTT+AGG - chr7_3:85685986-85686005 Msa1132840:CDS 35.0%
TGATGAAAGTTTCTTAGGGA+AGG - chr7_3:85685991-85686010 Msa1132840:CDS 35.0%
GATGGTACAAAGAATCTTCA+CGG - chr7_3:85686214-85686233 Msa1132840:CDS 35.0%
AACAGTATCAGAAAAGTAGC+AGG - chr7_3:85686242-85686261 Msa1132840:CDS 35.0%
! GATGAAGTTGATTTAGAAGC+TGG - chr7_3:85685205-85685224 Msa1132840:CDS 35.0%
!! CTGAAGCTTTGAAAGAATTG+AGG - chr7_3:85685401-85685420 Msa1132840:CDS 35.0%
AGCAGAAGAGAAATTGACAA+GGG + chr7_3:85685635-85685654 None:intergenic 35.0%
AAGCAGAAGAGAAATTGACA+AGG + chr7_3:85685636-85685655 None:intergenic 35.0%
GAAACCTTGTATGTTACAAC+AGG - chr7_3:85685853-85685872 Msa1132840:CDS 35.0%
AACCTTGTATGTTACAACAG+GGG - chr7_3:85685855-85685874 Msa1132840:CDS 35.0%
AGCGAATACAAAGAAACAGT+AGG - chr7_3:85685896-85685915 Msa1132840:CDS 35.0%
GCGAATACAAAGAAACAGTA+GGG - chr7_3:85685897-85685916 Msa1132840:CDS 35.0%
GGAGATGATGAAAGTTTCTT+AGG - chr7_3:85685986-85686005 Msa1132840:CDS 35.0%
TGATGAAAGTTTCTTAGGGA+AGG - chr7_3:85685991-85686010 Msa1132840:CDS 35.0%
GATGGTACAAAGAATCTTCA+CGG - chr7_3:85686214-85686233 Msa1132840:CDS 35.0%
AACAGTATCAGAAAAGTAGC+AGG - chr7_3:85686242-85686261 Msa1132840:CDS 35.0%
AGTTGGGAAAATGGGTCTAA+CGG + chr7_3:85684819-85684838 None:intergenic 40.0%
!! GAAGCTGGTCTTCAAAAACA+AGG - chr7_3:85685220-85685239 Msa1132840:CDS 40.0%
AAGATCTTCACTGACCCATT+TGG - chr7_3:85685258-85685277 Msa1132840:CDS 40.0%
TAGGACTCAACTCGAAGAAA+TGG - chr7_3:85685474-85685493 Msa1132840:CDS 40.0%
AGACTCTCTGGACTTAAAGA+TGG - chr7_3:85685520-85685539 Msa1132840:CDS 40.0%
GAAACTCAAGGAGCTTATGA+TGG - chr7_3:85685594-85685613 Msa1132840:intron 40.0%
GCAATACAAGAACATGGAAG+AGG - chr7_3:85686013-85686032 Msa1132840:CDS 40.0%
ACAAGAACATGGAAGAGGAA+AGG - chr7_3:85686018-85686037 Msa1132840:CDS 40.0%
TGAAGCACAAGGTGAGAAAA+TGG - chr7_3:85686147-85686166 Msa1132840:CDS 40.0%
ATCAGAAAAGTAGCAGGAAG+TGG - chr7_3:85686248-85686267 Msa1132840:CDS 40.0%
CTGCTGAAACTCACTACAAT+GGG + chr7_3:85686325-85686344 None:intergenic 40.0%
ACTGCTGAAACTCACTACAA+TGG + chr7_3:85686326-85686345 None:intergenic 40.0%
AGTCGTACACAACTCAACAA+AGG + chr7_3:85686438-85686457 None:intergenic 40.0%
AGTTGGGAAAATGGGTCTAA+CGG + chr7_3:85684819-85684838 None:intergenic 40.0%
!! GAAGCTGGTCTTCAAAAACA+AGG - chr7_3:85685220-85685239 Msa1132840:CDS 40.0%
AAGATCTTCACTGACCCATT+TGG - chr7_3:85685258-85685277 Msa1132840:CDS 40.0%
TAGGACTCAACTCGAAGAAA+TGG - chr7_3:85685474-85685493 Msa1132840:CDS 40.0%
AGACTCTCTGGACTTAAAGA+TGG - chr7_3:85685520-85685539 Msa1132840:CDS 40.0%
GAAACTCAAGGAGCTTATGA+TGG - chr7_3:85685594-85685613 Msa1132840:intron 40.0%
GCAATACAAGAACATGGAAG+AGG - chr7_3:85686013-85686032 Msa1132840:CDS 40.0%
ACAAGAACATGGAAGAGGAA+AGG - chr7_3:85686018-85686037 Msa1132840:CDS 40.0%
TGAAGCACAAGGTGAGAAAA+TGG - chr7_3:85686147-85686166 Msa1132840:CDS 40.0%
ATCAGAAAAGTAGCAGGAAG+TGG - chr7_3:85686248-85686267 Msa1132840:CDS 40.0%
CTGCTGAAACTCACTACAAT+GGG + chr7_3:85686325-85686344 None:intergenic 40.0%
ACTGCTGAAACTCACTACAA+TGG + chr7_3:85686326-85686345 None:intergenic 40.0%
AGTCGTACACAACTCAACAA+AGG + chr7_3:85686438-85686457 None:intergenic 40.0%
! GAAAGAAGCGCAGATTGAGA+AGG + chr7_3:85684911-85684930 None:intergenic 45.0%
!! GCTGGTCTTCAAAAACAAGG+TGG - chr7_3:85685223-85685242 Msa1132840:CDS 45.0%
GCTGCTAATAGAAGACTCTC+TGG - chr7_3:85685508-85685527 Msa1132840:CDS 45.0%
! TGGCTTGCGTAAGAAACTCA+AGG - chr7_3:85685582-85685601 Msa1132840:intron 45.0%
! GGAGCTTATGATGGAGTTTC+AGG - chr7_3:85685603-85685622 Msa1132840:intron 45.0%
AGCCCCTGTTGTAACATACA+AGG + chr7_3:85685860-85685879 None:intergenic 45.0%
GGGAAGGCAATACAAGAACA+TGG - chr7_3:85686007-85686026 Msa1132840:CDS 45.0%
ACATGGAAGAGGAAAGGTTC+TGG - chr7_3:85686024-85686043 Msa1132840:CDS 45.0%
!! AGGAAAGGTTCTGGAAACTG+TGG - chr7_3:85686033-85686052 Msa1132840:CDS 45.0%
GCTGTTATGGTTGAAGCACA+AGG - chr7_3:85686136-85686155 Msa1132840:CDS 45.0%
! GAAAGAAGCGCAGATTGAGA+AGG + chr7_3:85684911-85684930 None:intergenic 45.0%
!! GCTGGTCTTCAAAAACAAGG+TGG - chr7_3:85685223-85685242 Msa1132840:CDS 45.0%
GCTGCTAATAGAAGACTCTC+TGG - chr7_3:85685508-85685527 Msa1132840:CDS 45.0%
! TGGCTTGCGTAAGAAACTCA+AGG - chr7_3:85685582-85685601 Msa1132840:intron 45.0%
! GGAGCTTATGATGGAGTTTC+AGG - chr7_3:85685603-85685622 Msa1132840:intron 45.0%
AGCCCCTGTTGTAACATACA+AGG + chr7_3:85685860-85685879 None:intergenic 45.0%
GGGAAGGCAATACAAGAACA+TGG - chr7_3:85686007-85686026 Msa1132840:CDS 45.0%
ACATGGAAGAGGAAAGGTTC+TGG - chr7_3:85686024-85686043 Msa1132840:CDS 45.0%
!! AGGAAAGGTTCTGGAAACTG+TGG - chr7_3:85686033-85686052 Msa1132840:CDS 45.0%
GCTGTTATGGTTGAAGCACA+AGG - chr7_3:85686136-85686155 Msa1132840:CDS 45.0%
GTATGTTACAACAGGGGCTG+AGG - chr7_3:85685861-85685880 Msa1132840:CDS 50.0%
AGGGGAACATGCTGATGAAG+AGG - chr7_3:85685940-85685959 Msa1132840:CDS 50.0%
AGCAGGAAGTGGATGTGCAT+TGG - chr7_3:85686259-85686278 Msa1132840:CDS 50.0%
GCAGGAAGTGGATGTGCATT+GGG - chr7_3:85686260-85686279 Msa1132840:CDS 50.0%
GTATGTTACAACAGGGGCTG+AGG - chr7_3:85685861-85685880 Msa1132840:CDS 50.0%
AGGGGAACATGCTGATGAAG+AGG - chr7_3:85685940-85685959 Msa1132840:CDS 50.0%
AGCAGGAAGTGGATGTGCAT+TGG - chr7_3:85686259-85686278 Msa1132840:CDS 50.0%
GCAGGAAGTGGATGTGCATT+GGG - chr7_3:85686260-85686279 Msa1132840:CDS 50.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 85684806 85686627 85684806 ID=Msa1132840;Name=Msa1132840
chr7_3 mRNA 85684806 85686627 85684806 ID=Msa1132840-mRNA-1;Parent=Msa1132840;Name=Msa1132840-mRNA-1;_AED=0.02;_eAED=0.02;_QI=204|1|1|1|0.5|0.33|3|276|319
chr7_3 exon 85684806 85685558 85684806 ID=Msa1132840-mRNA-1:exon:25710;Parent=Msa1132840-mRNA-1
chr7_3 exon 85685809 85686320 85685809 ID=Msa1132840-mRNA-1:exon:25709;Parent=Msa1132840-mRNA-1
chr7_3 exon 85686453 85686627 85686453 ID=Msa1132840-mRNA-1:exon:25708;Parent=Msa1132840-mRNA-1
chr7_3 five_prime_UTR 85686453 85686627 85686453 ID=Msa1132840-mRNA-1:five_prime_utr;Parent=Msa1132840-mRNA-1
chr7_3 five_prime_UTR 85686292 85686320 85686292 ID=Msa1132840-mRNA-1:five_prime_utr;Parent=Msa1132840-mRNA-1
chr7_3 CDS 85685809 85686291 85685809 ID=Msa1132840-mRNA-1:cds;Parent=Msa1132840-mRNA-1
chr7_3 CDS 85685082 85685558 85685082 ID=Msa1132840-mRNA-1:cds;Parent=Msa1132840-mRNA-1
chr7_3 three_prime_UTR 85684806 85685081 85684806 ID=Msa1132840-mRNA-1:three_prime_utr;Parent=Msa1132840-mRNA-1
Gene Sequence

>Msa1132840

ATGAATGATCTAATGACAAAATCATTCACCAACTATGTTGATCTAAAAAAAGCAGCTATGAAAGATGAAGTTGATTTAGAAGCTGGTCTTCAAAAACAAGGTGGTGTTGAATTAACAAGATCTTCACTGACCCATTTGGAAACTGATATGAATTTGTTCTTGGAAGAGGCTGAGAAAGTAAGAACAGAAATGGGTGAAATTCGCGATATACTAACAAAGCTTGAACAAGCAAATGAAGAGAGCAAGAGTCTTCACAAAACTGAAGCTTTGAAAGAATTGAGGGAAAGAATTAATACTGATATTGTAACAGTTTTGAAGAAAGCAAAGTGTATTAGGACTCAACTCGAAGAAATGGATCGTGCTAATGCTGCTAATAGAAGACTCTCTGGACTTAAAGATGGTTCACCAGCAATTTATAGAACTAGAATTGCTGTTACTAATGGCTTGCGTAAGAAACTCAAGGAGCTTATGATGGAGTTTCAGGGGCTGAGGCAGAAAATGATGAGCGAATACAAAGAAACAGTAGGGAGAAGATATTATACAGTGACAGGGGAACATGCTGATGAAGAGGTAATTGAGAAGATAATATCAAATGGAGATGATGAAAGTTTCTTAGGGAAGGCAATACAAGAACATGGAAGAGGAAAGGTTCTGGAAACTGTGGTTGAGATACAAGACAGACATGATGCTGCTAAAGAGATTGAGAAGAGTTTATTGGAACTTCATCAAATATTTTTGGATATGGCTGTTATGGTTGAAGCACAAGGTGAGAAAATGGATGATATTGAACATCATGTTCTTCATGCTTCTCATTATGTTAAAGATGGTACAAAGAATCTTCACGGTGCTAAACAGTATCAGAAAAGTAGCAGGAAGTGGATGTGCATTGGGATTATACTTTTGCTTATTCTGGTTCTCATCATTGTTATTCCCATTGTAGTGAGTTTCAGCAGTTCTTGA

Protein sequence

>Msa1132840

MNDLMTKSFTNYVDLKKAAMKDEVDLEAGLQKQGGVELTRSSLTHLETDMNLFLEEAEKVRTEMGEIRDILTKLEQANEESKSLHKTEALKELRERINTDIVTVLKKAKCIRTQLEEMDRANAANRRLSGLKDGSPAIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMSEYKETVGRRYYTVTGEHADEEVIEKIISNGDDESFLGKAIQEHGRGKVLETVVEIQDRHDAAKEIEKSLLELHQIFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLHGAKQYQKSSRKWMCIGIILLLILVLIIVIPIVVSFSSS*