Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155910 | XP_013468628.2 | 95.484 | 310 | 14 | 0 | 4 | 313 | 10 | 319 | 0.0 | 617 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155910 | sp|Q9FFJ8|LIMYB_ARATH | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.94e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155910 | A0A072VX43 | 94.516 | 310 | 17 | 0 | 4 | 313 | 10 | 319 | 0.0 | 612 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0427350 | Msa1155910 | 0.815668 | 8.217791e-52 | -8.615850e-47 |
| Msa0475870 | Msa1155910 | 0.817605 | 3.023359e-52 | -8.615850e-47 |
| Msa0269940 | Msa1155910 | 0.829327 | 5.476797e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155910 | MtrunA17_Chr8g0362511 | 90.032 | 311 | 31 | 0 | 3 | 313 | 61 | 371 | 0.0 | 586 |
| Msa1155910 | MtrunA17_Chr5g0402821 | 53.674 | 313 | 122 | 6 | 10 | 305 | 16 | 322 | 1.58e-109 | 321 |
| Msa1155910 | MtrunA17_Chr3g0098031 | 81.928 | 83 | 15 | 0 | 109 | 191 | 1 | 83 | 4.13e-45 | 148 |
| Msa1155910 | MtrunA17_Chr2g0285481 | 32.114 | 246 | 149 | 5 | 2 | 233 | 14 | 255 | 4.64e-35 | 129 |
| Msa1155910 | MtrunA17_Chr1g0172741 | 32.114 | 246 | 149 | 5 | 2 | 233 | 14 | 255 | 5.37e-35 | 129 |
| Msa1155910 | MtrunA17_Chr8g0334551 | 34.463 | 177 | 98 | 2 | 10 | 186 | 22 | 180 | 3.50e-29 | 114 |
| Msa1155910 | MtrunA17_Chr2g0321391 | 31.844 | 179 | 105 | 4 | 68 | 233 | 3 | 177 | 1.84e-21 | 91.3 |
| Msa1155910 | MtrunA17_Chr3g0113081 | 29.834 | 181 | 121 | 4 | 1 | 179 | 374 | 550 | 2.92e-19 | 88.2 |
| Msa1155910 | MtrunA17_Chr3g0113081 | 29.677 | 155 | 105 | 3 | 10 | 164 | 185 | 335 | 3.38e-18 | 85.1 |
| Msa1155910 | MtrunA17_Chr3g0113081 | 30.645 | 124 | 84 | 2 | 10 | 133 | 8 | 129 | 3.30e-15 | 76.3 |
| Msa1155910 | MtrunA17_Chr5g0422691 | 40.217 | 92 | 54 | 1 | 2 | 92 | 14 | 105 | 2.72e-17 | 76.3 |
| Msa1155910 | MtrunA17_Chr7g0254281 | 42.466 | 73 | 42 | 0 | 233 | 305 | 15 | 87 | 8.19e-17 | 74.7 |
| Msa1155910 | MtrunA17_Chr5g0405761 | 23.129 | 294 | 205 | 7 | 1 | 294 | 41 | 313 | 8.27e-12 | 65.1 |
| Msa1155910 | MtrunA17_Chr1g0176881 | 27.500 | 120 | 86 | 1 | 16 | 135 | 198 | 316 | 4.10e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155910 | AT5G05800.1 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.99e-14 | 73.6 |
| Msa1155910 | AT5G05800.5 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.99e-14 | 73.6 |
| Msa1155910 | AT5G05800.3 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.99e-14 | 73.6 |
| Msa1155910 | AT5G05800.2 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.99e-14 | 73.6 |
| Msa1155910 | AT5G05800.4 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.99e-14 | 73.6 |
| Msa1155910 | AT3G11310.1 | 27.419 | 186 | 118 | 4 | 10 | 180 | 173 | 356 | 9.39e-11 | 63.2 |
Find 61 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCACTTTCTCTCCAATATT+TGG | 0.180945 | 7_4:+43889948 | None:intergenic |
| TAAGAAACCATCTAATATTT+AGG | 0.205786 | 7_4:-43889616 | None:intergenic |
| ACATAAGTCAAGTAAAATTT+TGG | 0.222616 | 7_4:+43890573 | None:intergenic |
| ACGACATGGAAACAATTAAT+TGG | 0.237993 | 7_4:-43890400 | Msa1155910:CDS |
| GATGAATTGGAATTCATATA+TGG | 0.262668 | 7_4:-43890158 | Msa1155910:CDS |
| TTCAATAATTTAACGCAATC+TGG | 0.268422 | 7_4:+43889786 | None:intergenic |
| AGAAAGGTTTCACCAAATAT+TGG | 0.287033 | 7_4:-43889960 | Msa1155910:CDS |
| TTTGGAATTTCGTGATGAAT+TGG | 0.307078 | 7_4:-43890171 | Msa1155910:CDS |
| GACCGGGCTTTCCACATTTA+CGG | 0.308674 | 7_4:+43890539 | None:intergenic |
| ATCTTAACCTAAATATTAGA+TGG | 0.348450 | 7_4:+43889609 | None:intergenic |
| AAAAGAGTCGAAGGAAGATT+TGG | 0.364686 | 7_4:-43889667 | Msa1155910:CDS |
| CAATTAATTGGTAAAGAAAC+AGG | 0.372346 | 7_4:-43890388 | Msa1155910:CDS |
| ATTGGTAAAGAAACAGGTTT+GGG | 0.383062 | 7_4:-43890382 | Msa1155910:CDS |
| AAAATTTCGCTATCAAGGTT+TGG | 0.385837 | 7_4:-43890189 | Msa1155910:CDS |
| ACACCAATGGACACCAGCTT+TGG | 0.388131 | 7_4:-43890114 | Msa1155910:CDS |
| GATGATAGTGAATTTGATAT+TGG | 0.393251 | 7_4:-43890026 | Msa1155910:CDS |
| TATTTAAAATTTCGCTATCA+AGG | 0.406698 | 7_4:-43890194 | Msa1155910:CDS |
| AATTGGTAAAGAAACAGGTT+TGG | 0.414579 | 7_4:-43890383 | Msa1155910:CDS |
| TGGATACTTTGAGAAATGAT+TGG | 0.416953 | 7_4:-43890423 | Msa1155910:CDS |
| CGAAGGAAGATTTGGTAGAG+TGG | 0.418271 | 7_4:-43889659 | Msa1155910:CDS |
| CACCAATGGACACCAGCTTT+GGG | 0.429567 | 7_4:-43890113 | Msa1155910:CDS |
| TTGAAAAGTGCAAAGGATGA+TGG | 0.438052 | 7_4:-43889768 | Msa1155910:CDS |
| ATTAAGGTATATTGCAGCTA+TGG | 0.438851 | 7_4:-43890647 | None:intergenic |
| ATGAATTGGAATTCATATAT+GGG | 0.451875 | 7_4:-43890157 | Msa1155910:CDS |
| TGGTGACCACTTTAGCCCTC+TGG | 0.472733 | 7_4:-43890006 | Msa1155910:CDS |
| CTTATTCCTAAAAGCAAGAC+CGG | 0.476233 | 7_4:+43890522 | None:intergenic |
| CATGGTGGGATGCTAAGATA+AGG | 0.494064 | 7_4:-43890321 | Msa1155910:CDS |
| AGGTCATAATGAAGTTGAAA+AGG | 0.499240 | 7_4:-43889853 | Msa1155910:CDS |
| ATATTGATGCTGATGCTTCA+TGG | 0.500130 | 7_4:-43890339 | Msa1155910:CDS |
| ATCCGTAAATGTGGAAAGCC+CGG | 0.502131 | 7_4:-43890541 | Msa1155910:CDS |
| ACAAAGGGAAAGGCAAAGGT+TGG | 0.515623 | 7_4:-43889927 | Msa1155910:CDS |
| CACCCAAAGCTGGTGTCCAT+TGG | 0.517260 | 7_4:+43890111 | None:intergenic |
| TCAGAGTCAATTATTTCTTG+TGG | 0.529496 | 7_4:+43890047 | None:intergenic |
| GGTGTGCCATTAGAATCTAA+TGG | 0.531870 | 7_4:-43890092 | Msa1155910:CDS |
| GTAAAGAAACAGGTTTGGGA+TGG | 0.538168 | 7_4:-43890378 | Msa1155910:CDS |
| ATTGGAGAGAAAGTGACAAA+GGG | 0.539994 | 7_4:-43889942 | Msa1155910:CDS |
| TCTAATGGCACACCCAAAGC+TGG | 0.551818 | 7_4:+43890101 | None:intergenic |
| AAAATTCAGTAAAAGCAACT+TGG | 0.557465 | 7_4:-43890612 | Msa1155910:CDS |
| TAAATTATTGAAAAGTGCAA+AGG | 0.562498 | 7_4:-43889775 | Msa1155910:CDS |
| ATGGTGGGATGCTAAGATAA+GGG | 0.562867 | 7_4:-43890320 | Msa1155910:intron |
| GCTGCCACCTCTCATGTCCA+TGG | 0.568203 | 7_4:-43889822 | Msa1155910:CDS |
| CAAAGGGAAAGGCAAAGGTT+GGG | 0.568855 | 7_4:-43889926 | Msa1155910:CDS |
| CTGGAATAGAGTACTCTCCA+TGG | 0.582152 | 7_4:+43889805 | None:intergenic |
| AATAACCTTAAAAGAGTCGA+AGG | 0.582919 | 7_4:-43889676 | Msa1155910:CDS |
| AGGTTTGGGATGGAATCCTC+AGG | 0.587284 | 7_4:-43890368 | Msa1155910:CDS |
| TATTGGAGAGAAAGTGACAA+AGG | 0.587956 | 7_4:-43889943 | Msa1155910:CDS |
| TGAGAAATGATTGGACGACA+TGG | 0.587998 | 7_4:-43890414 | Msa1155910:CDS |
| CGGTTAGTTGAAGCAGCTGA+AGG | 0.604811 | 7_4:-43889873 | Msa1155910:CDS |
| TGGCAACAAGTCAACACCAA+TGG | 0.615706 | 7_4:-43890127 | Msa1155910:CDS |
| GCATCAATATTTCCTACCTG+AGG | 0.624235 | 7_4:+43890352 | None:intergenic |
| AGAGAAAGTGACAAAGGGAA+AGG | 0.634836 | 7_4:-43889937 | Msa1155910:CDS |
| AGTGACAAAGGGAAAGGCAA+AGG | 0.637371 | 7_4:-43889931 | Msa1155910:CDS |
| CTCTCCATGGACATGAGAGG+TGG | 0.641476 | 7_4:+43889818 | None:intergenic |
| ATTCATATATGGGGATGCAG+TGG | 0.646143 | 7_4:-43890147 | Msa1155910:CDS |
| GTACTCTCCATGGACATGAG+AGG | 0.646753 | 7_4:+43889815 | None:intergenic |
| TGATGCTGATGCTTCATGGT+GGG | 0.646760 | 7_4:-43890335 | Msa1155910:CDS |
| TTATTCCTAAAAGCAAGACC+GGG | 0.648563 | 7_4:+43890523 | None:intergenic |
| ATGGGTGAGATCCGTAAATG+TGG | 0.672000 | 7_4:-43890550 | Msa1155910:CDS |
| TGAATTGGAATTCATATATG+GGG | 0.675974 | 7_4:-43890156 | Msa1155910:CDS |
| TTGGGATGGAATCCTCAGGT+AGG | 0.678607 | 7_4:-43890364 | Msa1155910:CDS |
| TTGATGCTGATGCTTCATGG+TGG | 0.719368 | 7_4:-43890336 | Msa1155910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACAAGAGAAAATATTT+AGG | + | chr7_4:43890021-43890040 | None:intergenic | 15.0% |
| !!! | TAAATATTTTCTCTTGTTAT+TGG | - | chr7_4:43890020-43890039 | Msa1155910:CDS | 15.0% |
| !! | AATAACAAGAGAAAATATTT+AGG | + | chr7_4:43890021-43890040 | None:intergenic | 15.0% |
| !!! | TAAATATTTTCTCTTGTTAT+TGG | - | chr7_4:43890020-43890039 | Msa1155910:CDS | 15.0% |
| !!! | ACATAAGTCAAGTAAAATTT+TGG | + | chr7_4:43889687-43889706 | None:intergenic | 20.0% |
| !!! | AATTTTACTTGACTTATGTA+TGG | - | chr7_4:43889688-43889707 | Msa1155910:CDS | 20.0% |
| !!! | ATTTTACTTGACTTATGTAT+GGG | - | chr7_4:43889689-43889708 | Msa1155910:CDS | 20.0% |
| !!! | TATTTAAAATTTCGCTATCA+AGG | - | chr7_4:43890063-43890082 | Msa1155910:CDS | 20.0% |
| !! | ATGAATTGGAATTCATATAT+GGG | - | chr7_4:43890100-43890119 | Msa1155910:CDS | 20.0% |
| !!! | TAAATTATTGAAAAGTGCAA+AGG | - | chr7_4:43890482-43890501 | Msa1155910:CDS | 20.0% |
| !!! | ACATAAGTCAAGTAAAATTT+TGG | + | chr7_4:43889687-43889706 | None:intergenic | 20.0% |
| !!! | AATTTTACTTGACTTATGTA+TGG | - | chr7_4:43889688-43889707 | Msa1155910:CDS | 20.0% |
| !!! | ATTTTACTTGACTTATGTAT+GGG | - | chr7_4:43889689-43889708 | Msa1155910:CDS | 20.0% |
| !!! | TATTTAAAATTTCGCTATCA+AGG | - | chr7_4:43890063-43890082 | Msa1155910:CDS | 20.0% |
| !! | ATGAATTGGAATTCATATAT+GGG | - | chr7_4:43890100-43890119 | Msa1155910:CDS | 20.0% |
| !!! | TAAATTATTGAAAAGTGCAA+AGG | - | chr7_4:43890482-43890501 | Msa1155910:CDS | 20.0% |
| ! | AAAATTCAGTAAAAGCAACT+TGG | - | chr7_4:43889645-43889664 | Msa1155910:CDS | 25.0% |
| !!! | AGTAAAATTTTGGTATCTGA+TGG | + | chr7_4:43889677-43889696 | None:intergenic | 25.0% |
| !!! | TTGCTTTTAGGAATAAGAAA+TGG | - | chr7_4:43889741-43889760 | Msa1155910:CDS | 25.0% |
| !!! | TGCTTTTAGGAATAAGAAAT+GGG | - | chr7_4:43889742-43889761 | Msa1155910:CDS | 25.0% |
| !!! | TTCTATTTTTCAACTGCTTT+TGG | + | chr7_4:43889814-43889833 | None:intergenic | 25.0% |
| ! | AAAGCAGTTGAAAAATAGAA+TGG | - | chr7_4:43889814-43889833 | Msa1155910:CDS | 25.0% |
| ! | CAATTAATTGGTAAAGAAAC+AGG | - | chr7_4:43889869-43889888 | Msa1155910:CDS | 25.0% |
| ! | GATGAATTGGAATTCATATA+TGG | - | chr7_4:43890099-43890118 | Msa1155910:CDS | 25.0% |
| ! | TGAATTGGAATTCATATATG+GGG | - | chr7_4:43890101-43890120 | Msa1155910:CDS | 25.0% |
| !! | TTTTTGCCATTAGATTCTAA+TGG | + | chr7_4:43890174-43890193 | None:intergenic | 25.0% |
| !! | GATGATAGTGAATTTGATAT+TGG | - | chr7_4:43890231-43890250 | Msa1155910:intron | 25.0% |
| ! | TCAACCAAAAAAGAAAAGAA+AGG | - | chr7_4:43890281-43890300 | Msa1155910:intron | 25.0% |
| !! | GAAACCTTTCTTTTCTTTTT+TGG | + | chr7_4:43890288-43890307 | None:intergenic | 25.0% |
| ! | TTCAATAATTTAACGCAATC+TGG | + | chr7_4:43890474-43890493 | None:intergenic | 25.0% |
| !!! | ACTCTTTTAAGGTTATTAGT+AGG | + | chr7_4:43890578-43890597 | None:intergenic | 25.0% |
| ! | AAAATTCAGTAAAAGCAACT+TGG | - | chr7_4:43889645-43889664 | Msa1155910:CDS | 25.0% |
| !!! | AGTAAAATTTTGGTATCTGA+TGG | + | chr7_4:43889677-43889696 | None:intergenic | 25.0% |
| !!! | TTGCTTTTAGGAATAAGAAA+TGG | - | chr7_4:43889741-43889760 | Msa1155910:CDS | 25.0% |
| !!! | TGCTTTTAGGAATAAGAAAT+GGG | - | chr7_4:43889742-43889761 | Msa1155910:CDS | 25.0% |
| !!! | TTCTATTTTTCAACTGCTTT+TGG | + | chr7_4:43889814-43889833 | None:intergenic | 25.0% |
| ! | AAAGCAGTTGAAAAATAGAA+TGG | - | chr7_4:43889814-43889833 | Msa1155910:CDS | 25.0% |
| ! | CAATTAATTGGTAAAGAAAC+AGG | - | chr7_4:43889869-43889888 | Msa1155910:CDS | 25.0% |
| ! | GATGAATTGGAATTCATATA+TGG | - | chr7_4:43890099-43890118 | Msa1155910:CDS | 25.0% |
| ! | TGAATTGGAATTCATATATG+GGG | - | chr7_4:43890101-43890120 | Msa1155910:CDS | 25.0% |
| !! | TTTTTGCCATTAGATTCTAA+TGG | + | chr7_4:43890174-43890193 | None:intergenic | 25.0% |
| !! | GATGATAGTGAATTTGATAT+TGG | - | chr7_4:43890231-43890250 | Msa1155910:intron | 25.0% |
| ! | TCAACCAAAAAAGAAAAGAA+AGG | - | chr7_4:43890281-43890300 | Msa1155910:intron | 25.0% |
| !! | GAAACCTTTCTTTTCTTTTT+TGG | + | chr7_4:43890288-43890307 | None:intergenic | 25.0% |
| ! | TTCAATAATTTAACGCAATC+TGG | + | chr7_4:43890474-43890493 | None:intergenic | 25.0% |
| !!! | ACTCTTTTAAGGTTATTAGT+AGG | + | chr7_4:43890578-43890597 | None:intergenic | 25.0% |
| !! | TTTTAGGAATAAGAAATGGG+AGG | - | chr7_4:43889745-43889764 | Msa1155910:CDS | 30.0% |
| ! | TGGATACTTTGAGAAATGAT+TGG | - | chr7_4:43889834-43889853 | Msa1155910:CDS | 30.0% |
| ACGACATGGAAACAATTAAT+TGG | - | chr7_4:43889857-43889876 | Msa1155910:CDS | 30.0% | |
| AATTGGTAAAGAAACAGGTT+TGG | - | chr7_4:43889874-43889893 | Msa1155910:CDS | 30.0% | |
| ATTGGTAAAGAAACAGGTTT+GGG | - | chr7_4:43889875-43889894 | Msa1155910:CDS | 30.0% | |
| AAAATTTCGCTATCAAGGTT+TGG | - | chr7_4:43890068-43890087 | Msa1155910:CDS | 30.0% | |
| ! | TTTGGAATTTCGTGATGAAT+TGG | - | chr7_4:43890086-43890105 | Msa1155910:CDS | 30.0% |
| ! | TCAGAGTCAATTATTTCTTG+TGG | + | chr7_4:43890213-43890232 | None:intergenic | 30.0% |
| AGAAAGGTTTCACCAAATAT+TGG | - | chr7_4:43890297-43890316 | Msa1155910:intron | 30.0% | |
| CTATGAGAAAAACATTTGAG+CGG | - | chr7_4:43890364-43890383 | Msa1155910:CDS | 30.0% | |
| AGGTCATAATGAAGTTGAAA+AGG | - | chr7_4:43890404-43890423 | Msa1155910:CDS | 30.0% | |
| !!! | AAGGATGATGGTTTTTTGAA+TGG | - | chr7_4:43890501-43890520 | Msa1155910:CDS | 30.0% |
| AATAACCTTAAAAGAGTCGA+AGG | - | chr7_4:43890581-43890600 | Msa1155910:CDS | 30.0% | |
| !! | TTTTAGGAATAAGAAATGGG+AGG | - | chr7_4:43889745-43889764 | Msa1155910:CDS | 30.0% |
| ! | TGGATACTTTGAGAAATGAT+TGG | - | chr7_4:43889834-43889853 | Msa1155910:CDS | 30.0% |
| ACGACATGGAAACAATTAAT+TGG | - | chr7_4:43889857-43889876 | Msa1155910:CDS | 30.0% | |
| AATTGGTAAAGAAACAGGTT+TGG | - | chr7_4:43889874-43889893 | Msa1155910:CDS | 30.0% | |
| ATTGGTAAAGAAACAGGTTT+GGG | - | chr7_4:43889875-43889894 | Msa1155910:CDS | 30.0% | |
| AAAATTTCGCTATCAAGGTT+TGG | - | chr7_4:43890068-43890087 | Msa1155910:CDS | 30.0% | |
| ! | TTTGGAATTTCGTGATGAAT+TGG | - | chr7_4:43890086-43890105 | Msa1155910:CDS | 30.0% |
| ! | TCAGAGTCAATTATTTCTTG+TGG | + | chr7_4:43890213-43890232 | None:intergenic | 30.0% |
| AGAAAGGTTTCACCAAATAT+TGG | - | chr7_4:43890297-43890316 | Msa1155910:intron | 30.0% | |
| CTATGAGAAAAACATTTGAG+CGG | - | chr7_4:43890364-43890383 | Msa1155910:CDS | 30.0% | |
| AGGTCATAATGAAGTTGAAA+AGG | - | chr7_4:43890404-43890423 | Msa1155910:CDS | 30.0% | |
| !!! | AAGGATGATGGTTTTTTGAA+TGG | - | chr7_4:43890501-43890520 | Msa1155910:CDS | 30.0% |
| AATAACCTTAAAAGAGTCGA+AGG | - | chr7_4:43890581-43890600 | Msa1155910:CDS | 30.0% | |
| TTATTCCTAAAAGCAAGACC+GGG | + | chr7_4:43889737-43889756 | None:intergenic | 35.0% | |
| CTTATTCCTAAAAGCAAGAC+CGG | + | chr7_4:43889738-43889757 | None:intergenic | 35.0% | |
| ATATTGATGCTGATGCTTCA+TGG | - | chr7_4:43889918-43889937 | Msa1155910:CDS | 35.0% | |
| !! | TCTCTTGTTATTGGTTATGC+AGG | - | chr7_4:43890029-43890048 | Msa1155910:CDS | 35.0% |
| ! | TTGGTTGAGTATTTTCCAGA+GGG | + | chr7_4:43890269-43890288 | None:intergenic | 35.0% |
| ! | TTTGGTTGAGTATTTTCCAG+AGG | + | chr7_4:43890270-43890289 | None:intergenic | 35.0% |
| ! | GTCACTTTCTCTCCAATATT+TGG | + | chr7_4:43890312-43890331 | None:intergenic | 35.0% |
| TATTGGAGAGAAAGTGACAA+AGG | - | chr7_4:43890314-43890333 | Msa1155910:intron | 35.0% | |
| ATTGGAGAGAAAGTGACAAA+GGG | - | chr7_4:43890315-43890334 | Msa1155910:intron | 35.0% | |
| ! | TTGAAAAGTGCAAAGGATGA+TGG | - | chr7_4:43890489-43890508 | Msa1155910:CDS | 35.0% |
| ! | ATCTTCCTTCGACTCTTTTA+AGG | + | chr7_4:43890589-43890608 | None:intergenic | 35.0% |
| AAAAGAGTCGAAGGAAGATT+TGG | - | chr7_4:43890590-43890609 | Msa1155910:CDS | 35.0% | |
| TTATTCCTAAAAGCAAGACC+GGG | + | chr7_4:43889737-43889756 | None:intergenic | 35.0% | |
| CTTATTCCTAAAAGCAAGAC+CGG | + | chr7_4:43889738-43889757 | None:intergenic | 35.0% | |
| ATATTGATGCTGATGCTTCA+TGG | - | chr7_4:43889918-43889937 | Msa1155910:CDS | 35.0% | |
| !! | TCTCTTGTTATTGGTTATGC+AGG | - | chr7_4:43890029-43890048 | Msa1155910:CDS | 35.0% |
| ! | TTGGTTGAGTATTTTCCAGA+GGG | + | chr7_4:43890269-43890288 | None:intergenic | 35.0% |
| ! | TTTGGTTGAGTATTTTCCAG+AGG | + | chr7_4:43890270-43890289 | None:intergenic | 35.0% |
| ! | GTCACTTTCTCTCCAATATT+TGG | + | chr7_4:43890312-43890331 | None:intergenic | 35.0% |
| TATTGGAGAGAAAGTGACAA+AGG | - | chr7_4:43890314-43890333 | Msa1155910:intron | 35.0% | |
| ATTGGAGAGAAAGTGACAAA+GGG | - | chr7_4:43890315-43890334 | Msa1155910:intron | 35.0% | |
| ! | TTGAAAAGTGCAAAGGATGA+TGG | - | chr7_4:43890489-43890508 | Msa1155910:CDS | 35.0% |
| ! | ATCTTCCTTCGACTCTTTTA+AGG | + | chr7_4:43890589-43890608 | None:intergenic | 35.0% |
| AAAAGAGTCGAAGGAAGATT+TGG | - | chr7_4:43890590-43890609 | Msa1155910:CDS | 35.0% | |
| TGAGAAATGATTGGACGACA+TGG | - | chr7_4:43889843-43889862 | Msa1155910:CDS | 40.0% | |
| GTAAAGAAACAGGTTTGGGA+TGG | - | chr7_4:43889879-43889898 | Msa1155910:CDS | 40.0% | |
| GCATCAATATTTCCTACCTG+AGG | + | chr7_4:43889908-43889927 | None:intergenic | 40.0% | |
| ! | ATGGTGGGATGCTAAGATAA+GGG | - | chr7_4:43889937-43889956 | Msa1155910:CDS | 40.0% |
| ATTCATATATGGGGATGCAG+TGG | - | chr7_4:43890110-43890129 | Msa1155910:CDS | 40.0% | |
| ! | GGTGTGCCATTAGAATCTAA+TGG | - | chr7_4:43890165-43890184 | Msa1155910:CDS | 40.0% |
| ! | TATTTTCCAGAGGGCTAAAG+TGG | + | chr7_4:43890260-43890279 | None:intergenic | 40.0% |
| AGAGAAAGTGACAAAGGGAA+AGG | - | chr7_4:43890320-43890339 | Msa1155910:intron | 40.0% | |
| TGAGAAATGATTGGACGACA+TGG | - | chr7_4:43889843-43889862 | Msa1155910:CDS | 40.0% | |
| GTAAAGAAACAGGTTTGGGA+TGG | - | chr7_4:43889879-43889898 | Msa1155910:CDS | 40.0% | |
| GCATCAATATTTCCTACCTG+AGG | + | chr7_4:43889908-43889927 | None:intergenic | 40.0% | |
| ! | ATGGTGGGATGCTAAGATAA+GGG | - | chr7_4:43889937-43889956 | Msa1155910:CDS | 40.0% |
| ATTCATATATGGGGATGCAG+TGG | - | chr7_4:43890110-43890129 | Msa1155910:CDS | 40.0% | |
| ! | GGTGTGCCATTAGAATCTAA+TGG | - | chr7_4:43890165-43890184 | Msa1155910:CDS | 40.0% |
| ! | TATTTTCCAGAGGGCTAAAG+TGG | + | chr7_4:43890260-43890279 | None:intergenic | 40.0% |
| AGAGAAAGTGACAAAGGGAA+AGG | - | chr7_4:43890320-43890339 | Msa1155910:intron | 40.0% | |
| ATGGGTGAGATCCGTAAATG+TGG | - | chr7_4:43889707-43889726 | Msa1155910:CDS | 45.0% | |
| ATCCGTAAATGTGGAAAGCC+CGG | - | chr7_4:43889716-43889735 | Msa1155910:CDS | 45.0% | |
| TTGATGCTGATGCTTCATGG+TGG | - | chr7_4:43889921-43889940 | Msa1155910:CDS | 45.0% | |
| TGATGCTGATGCTTCATGGT+GGG | - | chr7_4:43889922-43889941 | Msa1155910:CDS | 45.0% | |
| ! | CATGGTGGGATGCTAAGATA+AGG | - | chr7_4:43889936-43889955 | Msa1155910:CDS | 45.0% |
| TGGCAACAAGTCAACACCAA+TGG | - | chr7_4:43890130-43890149 | Msa1155910:CDS | 45.0% | |
| AGTGACAAAGGGAAAGGCAA+AGG | - | chr7_4:43890326-43890345 | Msa1155910:CDS | 45.0% | |
| ACAAAGGGAAAGGCAAAGGT+TGG | - | chr7_4:43890330-43890349 | Msa1155910:CDS | 45.0% | |
| CAAAGGGAAAGGCAAAGGTT+GGG | - | chr7_4:43890331-43890350 | Msa1155910:CDS | 45.0% | |
| ! | CTGGAATAGAGTACTCTCCA+TGG | + | chr7_4:43890455-43890474 | None:intergenic | 45.0% |
| ! | CGAAGGAAGATTTGGTAGAG+TGG | - | chr7_4:43890598-43890617 | Msa1155910:CDS | 45.0% |
| ATGGGTGAGATCCGTAAATG+TGG | - | chr7_4:43889707-43889726 | Msa1155910:CDS | 45.0% | |
| ATCCGTAAATGTGGAAAGCC+CGG | - | chr7_4:43889716-43889735 | Msa1155910:CDS | 45.0% | |
| TTGATGCTGATGCTTCATGG+TGG | - | chr7_4:43889921-43889940 | Msa1155910:CDS | 45.0% | |
| TGATGCTGATGCTTCATGGT+GGG | - | chr7_4:43889922-43889941 | Msa1155910:CDS | 45.0% | |
| ! | CATGGTGGGATGCTAAGATA+AGG | - | chr7_4:43889936-43889955 | Msa1155910:CDS | 45.0% |
| TGGCAACAAGTCAACACCAA+TGG | - | chr7_4:43890130-43890149 | Msa1155910:CDS | 45.0% | |
| AGTGACAAAGGGAAAGGCAA+AGG | - | chr7_4:43890326-43890345 | Msa1155910:CDS | 45.0% | |
| ACAAAGGGAAAGGCAAAGGT+TGG | - | chr7_4:43890330-43890349 | Msa1155910:CDS | 45.0% | |
| CAAAGGGAAAGGCAAAGGTT+GGG | - | chr7_4:43890331-43890350 | Msa1155910:CDS | 45.0% | |
| ! | CTGGAATAGAGTACTCTCCA+TGG | + | chr7_4:43890455-43890474 | None:intergenic | 45.0% |
| ! | CGAAGGAAGATTTGGTAGAG+TGG | - | chr7_4:43890598-43890617 | Msa1155910:CDS | 45.0% |
| GACCGGGCTTTCCACATTTA+CGG | + | chr7_4:43889721-43889740 | None:intergenic | 50.0% | |
| !! | GAAAGCCCGGTCTTGCTTTT+AGG | - | chr7_4:43889729-43889748 | Msa1155910:CDS | 50.0% |
| ! | AGGTTTGGGATGGAATCCTC+AGG | - | chr7_4:43889889-43889908 | Msa1155910:CDS | 50.0% |
| TTGGGATGGAATCCTCAGGT+AGG | - | chr7_4:43889893-43889912 | Msa1155910:CDS | 50.0% | |
| ACACCAATGGACACCAGCTT+TGG | - | chr7_4:43890143-43890162 | Msa1155910:CDS | 50.0% | |
| CACCAATGGACACCAGCTTT+GGG | - | chr7_4:43890144-43890163 | Msa1155910:CDS | 50.0% | |
| TCTAATGGCACACCCAAAGC+TGG | + | chr7_4:43890159-43890178 | None:intergenic | 50.0% | |
| ! | CGGTTAGTTGAAGCAGCTGA+AGG | - | chr7_4:43890384-43890403 | Msa1155910:CDS | 50.0% |
| GTACTCTCCATGGACATGAG+AGG | + | chr7_4:43890445-43890464 | None:intergenic | 50.0% | |
| GACCGGGCTTTCCACATTTA+CGG | + | chr7_4:43889721-43889740 | None:intergenic | 50.0% | |
| !! | GAAAGCCCGGTCTTGCTTTT+AGG | - | chr7_4:43889729-43889748 | Msa1155910:CDS | 50.0% |
| ! | AGGTTTGGGATGGAATCCTC+AGG | - | chr7_4:43889889-43889908 | Msa1155910:CDS | 50.0% |
| TTGGGATGGAATCCTCAGGT+AGG | - | chr7_4:43889893-43889912 | Msa1155910:CDS | 50.0% | |
| ACACCAATGGACACCAGCTT+TGG | - | chr7_4:43890143-43890162 | Msa1155910:CDS | 50.0% | |
| CACCAATGGACACCAGCTTT+GGG | - | chr7_4:43890144-43890163 | Msa1155910:CDS | 50.0% | |
| TCTAATGGCACACCCAAAGC+TGG | + | chr7_4:43890159-43890178 | None:intergenic | 50.0% | |
| ! | CGGTTAGTTGAAGCAGCTGA+AGG | - | chr7_4:43890384-43890403 | Msa1155910:CDS | 50.0% |
| GTACTCTCCATGGACATGAG+AGG | + | chr7_4:43890445-43890464 | None:intergenic | 50.0% | |
| CACCCAAAGCTGGTGTCCAT+TGG | + | chr7_4:43890149-43890168 | None:intergenic | 55.0% | |
| TGGTGACCACTTTAGCCCTC+TGG | - | chr7_4:43890251-43890270 | Msa1155910:intron | 55.0% | |
| CTCTCCATGGACATGAGAGG+TGG | + | chr7_4:43890442-43890461 | None:intergenic | 55.0% | |
| CACCCAAAGCTGGTGTCCAT+TGG | + | chr7_4:43890149-43890168 | None:intergenic | 55.0% | |
| TGGTGACCACTTTAGCCCTC+TGG | - | chr7_4:43890251-43890270 | Msa1155910:intron | 55.0% | |
| CTCTCCATGGACATGAGAGG+TGG | + | chr7_4:43890442-43890461 | None:intergenic | 55.0% | |
| GCTGCCACCTCTCATGTCCA+TGG | - | chr7_4:43890435-43890454 | Msa1155910:CDS | 60.0% | |
| GCTGCCACCTCTCATGTCCA+TGG | - | chr7_4:43890435-43890454 | Msa1155910:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 43889617 | 43890662 | 43889617 | ID=Msa1155910;Name=Msa1155910 |
| chr7_4 | mRNA | 43889617 | 43890662 | 43889617 | ID=Msa1155910-mRNA-1;Parent=Msa1155910;Name=Msa1155910-mRNA-1;_AED=0.04;_eAED=0.04;_QI=12|1|0.5|1|1|1|2|0|313 |
| chr7_4 | exon | 43889617 | 43890228 | 43889617 | ID=Msa1155910-mRNA-1:exon:11191;Parent=Msa1155910-mRNA-1 |
| chr7_4 | exon | 43890321 | 43890662 | 43890321 | ID=Msa1155910-mRNA-1:exon:11190;Parent=Msa1155910-mRNA-1 |
| chr7_4 | five_prime_UTR | 43890651 | 43890662 | 43890651 | ID=Msa1155910-mRNA-1:five_prime_utr;Parent=Msa1155910-mRNA-1 |
| chr7_4 | CDS | 43890321 | 43890650 | 43890321 | ID=Msa1155910-mRNA-1:cds;Parent=Msa1155910-mRNA-1 |
| chr7_4 | CDS | 43889617 | 43890228 | 43889617 | ID=Msa1155910-mRNA-1:cds;Parent=Msa1155910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
