Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427350 | XP_013468628.2 | 95.161 | 310 | 15 | 0 | 4 | 313 | 10 | 319 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427350 | sp|Q9FFJ8|LIMYB_ARATH | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.19e-13 | 73.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427350 | A0A072VX43 | 94.194 | 310 | 18 | 0 | 4 | 313 | 10 | 319 | 0.0 | 610 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0393570 | Msa0427350 | 0.805613 | 1.226675e-49 | -8.615850e-47 |
| Msa0427350 | Msa0475870 | 0.843824 | 1.104866e-58 | -8.615850e-47 |
| Msa0427350 | Msa0719080 | 0.835307 | 1.811137e-56 | -8.615850e-47 |
| Msa0427350 | Msa0719090 | 0.839099 | 1.940195e-57 | -8.615850e-47 |
| Msa0427350 | Msa0719390 | 0.811712 | 6.104652e-51 | -8.615850e-47 |
| Msa0427350 | Msa0789640 | 0.809235 | 2.091206e-50 | -8.615850e-47 |
| Msa0427350 | Msa1062220 | 0.912081 | 2.927918e-83 | -8.615850e-47 |
| Msa0427350 | Msa1155910 | 0.815668 | 8.217791e-52 | -8.615850e-47 |
| Msa0427350 | Msa1163330 | 0.821135 | 4.742133e-53 | -8.615850e-47 |
| Msa0427350 | Msa1211720 | 0.807895 | 4.042005e-50 | -8.615850e-47 |
| Msa0427350 | Msa1305900 | 0.811435 | 7.011645e-51 | -8.615850e-47 |
| Msa0269940 | Msa0427350 | 0.941826 | 2.111409e-101 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427350 | MtrunA17_Chr8g0362511 | 89.711 | 311 | 32 | 0 | 3 | 313 | 61 | 371 | 0.0 | 583 |
| Msa0427350 | MtrunA17_Chr5g0402821 | 53.674 | 313 | 122 | 6 | 10 | 305 | 16 | 322 | 1.66e-109 | 321 |
| Msa0427350 | MtrunA17_Chr3g0098031 | 81.928 | 83 | 15 | 0 | 109 | 191 | 1 | 83 | 3.96e-45 | 148 |
| Msa0427350 | MtrunA17_Chr2g0285481 | 32.114 | 246 | 149 | 5 | 2 | 233 | 14 | 255 | 5.66e-35 | 129 |
| Msa0427350 | MtrunA17_Chr1g0172741 | 32.114 | 246 | 149 | 5 | 2 | 233 | 14 | 255 | 5.96e-35 | 129 |
| Msa0427350 | MtrunA17_Chr8g0334551 | 33.898 | 177 | 99 | 2 | 10 | 186 | 22 | 180 | 1.71e-28 | 112 |
| Msa0427350 | MtrunA17_Chr2g0321391 | 31.844 | 179 | 105 | 4 | 68 | 233 | 3 | 177 | 1.97e-21 | 91.3 |
| Msa0427350 | MtrunA17_Chr3g0113081 | 29.834 | 181 | 121 | 4 | 1 | 179 | 374 | 550 | 4.32e-19 | 87.8 |
| Msa0427350 | MtrunA17_Chr3g0113081 | 29.677 | 155 | 105 | 3 | 10 | 164 | 185 | 335 | 3.32e-18 | 85.1 |
| Msa0427350 | MtrunA17_Chr3g0113081 | 30.645 | 124 | 84 | 2 | 10 | 133 | 8 | 129 | 3.42e-15 | 76.3 |
| Msa0427350 | MtrunA17_Chr5g0422691 | 40.217 | 92 | 54 | 1 | 2 | 92 | 14 | 105 | 2.67e-17 | 76.3 |
| Msa0427350 | MtrunA17_Chr7g0254281 | 42.466 | 73 | 42 | 0 | 233 | 305 | 15 | 87 | 8.19e-17 | 74.7 |
| Msa0427350 | MtrunA17_Chr5g0405761 | 23.129 | 294 | 205 | 7 | 1 | 294 | 41 | 313 | 9.25e-12 | 65.1 |
| Msa0427350 | MtrunA17_Chr1g0176881 | 27.500 | 120 | 86 | 1 | 16 | 135 | 198 | 316 | 4.13e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427350 | AT5G05800.1 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.23e-14 | 73.9 |
| Msa0427350 | AT5G05800.5 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.23e-14 | 73.9 |
| Msa0427350 | AT5G05800.3 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.23e-14 | 73.9 |
| Msa0427350 | AT5G05800.2 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.23e-14 | 73.9 |
| Msa0427350 | AT5G05800.4 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.23e-14 | 73.9 |
Find 62 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCACTTTCTCTCCAATATT+TGG | 0.180945 | 3_2:+78050706 | None:intergenic |
| TAAGAAACCATCTAATATTT+AGG | 0.205786 | 3_2:-78050374 | None:intergenic |
| ACATAAGTCAAGTAAAATTT+TGG | 0.222616 | 3_2:+78051331 | None:intergenic |
| ACGACATGGAAACAATTAAT+TGG | 0.237993 | 3_2:-78051158 | Msa0427350:CDS |
| GATGAATTGGAATTCATATA+TGG | 0.262668 | 3_2:-78050916 | Msa0427350:CDS |
| TTCAATAATTTAACGCAATC+TGG | 0.268422 | 3_2:+78050544 | None:intergenic |
| AGAAAGGTTTCACCAAATAT+TGG | 0.287033 | 3_2:-78050718 | Msa0427350:CDS |
| TTTGGAATTTCGTGATGAAT+TGG | 0.307078 | 3_2:-78050929 | Msa0427350:CDS |
| GACCGGGCTTTCCACATTTA+CGG | 0.308674 | 3_2:+78051297 | None:intergenic |
| ATCTTAACCTAAATATTAGA+TGG | 0.348450 | 3_2:+78050367 | None:intergenic |
| AAAAGAGTCGAAGGAAGATT+TGG | 0.364686 | 3_2:-78050425 | Msa0427350:CDS |
| CAATTAATTGGTAAAGAAAC+AGG | 0.372346 | 3_2:-78051146 | Msa0427350:CDS |
| ATTGGTAAAGAAACAGGTTT+GGG | 0.383062 | 3_2:-78051140 | Msa0427350:CDS |
| AAAATTTCGCTATCAAGGTT+TGG | 0.385837 | 3_2:-78050947 | Msa0427350:CDS |
| ACACCAATGGACACCAGCTT+TGG | 0.388131 | 3_2:-78050872 | Msa0427350:CDS |
| GATGATAGTGAATTTGATAT+TGG | 0.393251 | 3_2:-78050784 | Msa0427350:CDS |
| TATTTAAAATTTCGCTATCA+AGG | 0.406698 | 3_2:-78050952 | Msa0427350:CDS |
| AATTGGTAAAGAAACAGGTT+TGG | 0.414579 | 3_2:-78051141 | Msa0427350:CDS |
| CGAAGGAAGATTTGGTAGAG+TGG | 0.418271 | 3_2:-78050417 | Msa0427350:CDS |
| CACCAATGGACACCAGCTTT+GGG | 0.429567 | 3_2:-78050871 | Msa0427350:CDS |
| TTGAAAAGTGCAAAGGATGA+TGG | 0.438052 | 3_2:-78050526 | Msa0427350:CDS |
| ATTAAGGTATATTGCAGCTA+TGG | 0.438851 | 3_2:-78051405 | None:intergenic |
| ATGAATTGGAATTCATATAT+GGG | 0.451875 | 3_2:-78050915 | Msa0427350:CDS |
| TGGTGACCACTTTAGCCCTC+TGG | 0.472733 | 3_2:-78050764 | Msa0427350:CDS |
| CTTATTCCTAAAAGCAAGAC+CGG | 0.476233 | 3_2:+78051280 | None:intergenic |
| CATGGTGGGATGCTAAGATA+AGG | 0.494064 | 3_2:-78051079 | Msa0427350:CDS |
| AGGTCATAATGAAGTTGAAA+AGG | 0.499240 | 3_2:-78050611 | Msa0427350:CDS |
| ATATTGATGCTGATGCTTCA+TGG | 0.500130 | 3_2:-78051097 | Msa0427350:CDS |
| ATCCGTAAATGTGGAAAGCC+CGG | 0.502131 | 3_2:-78051299 | Msa0427350:CDS |
| ACAAAGGGAAAGGCAAAGGT+TGG | 0.515623 | 3_2:-78050685 | Msa0427350:CDS |
| CACCCAAAGCTGGTGTCCAT+TGG | 0.517260 | 3_2:+78050869 | None:intergenic |
| TCAGAGTCAATTATTTCTTG+TGG | 0.529496 | 3_2:+78050805 | None:intergenic |
| TGGATGCTTTGAGAAATGAT+TGG | 0.530048 | 3_2:-78051181 | Msa0427350:CDS |
| GGTGTGCCATTAGAATCTAA+TGG | 0.531870 | 3_2:-78050850 | Msa0427350:CDS |
| GTAAAGAAACAGGTTTGGGA+TGG | 0.538168 | 3_2:-78051136 | Msa0427350:CDS |
| ATTGGAGAGAAAGTGACAAA+GGG | 0.539994 | 3_2:-78050700 | Msa0427350:CDS |
| TCTAATGGCACACCCAAAGC+TGG | 0.551818 | 3_2:+78050859 | None:intergenic |
| AAAATTCAGTAAAAGCAACT+TGG | 0.557465 | 3_2:-78051370 | Msa0427350:CDS |
| TAAATTATTGAAAAGTGCAA+AGG | 0.562498 | 3_2:-78050533 | Msa0427350:CDS |
| ATGGTGGGATGCTAAGATAA+GGG | 0.562867 | 3_2:-78051078 | Msa0427350:intron |
| CAAAGGGAAAGGCAAAGGTT+GGG | 0.568855 | 3_2:-78050684 | Msa0427350:CDS |
| GCGGCCACCTCTCATGTCCA+TGG | 0.573543 | 3_2:-78050580 | Msa0427350:CDS |
| TGAGAAATGATTGGACGACA+TGG | 0.575579 | 3_2:-78051172 | Msa0427350:CDS |
| CTGGAATAGAGTACTCTCCA+TGG | 0.582152 | 3_2:+78050563 | None:intergenic |
| AATAACCTTAAAAGAGTCGA+AGG | 0.582919 | 3_2:-78050434 | Msa0427350:CDS |
| AGGTTTGGGATGGAATCCTC+AGG | 0.587284 | 3_2:-78051126 | Msa0427350:CDS |
| TATTGGAGAGAAAGTGACAA+AGG | 0.587956 | 3_2:-78050701 | Msa0427350:CDS |
| CGGTTAGTTGAAGCAGCTGA+AGG | 0.604811 | 3_2:-78050631 | Msa0427350:CDS |
| TGGCAACAAGTCAACACCAA+TGG | 0.615706 | 3_2:-78050885 | Msa0427350:CDS |
| GCATCAATATTTCCTACCTG+AGG | 0.624235 | 3_2:+78051110 | None:intergenic |
| AGTTGAAAAGGCTCAAATTG+CGG | 0.627899 | 3_2:-78050599 | Msa0427350:CDS |
| AGAGAAAGTGACAAAGGGAA+AGG | 0.634836 | 3_2:-78050695 | Msa0427350:CDS |
| AGTGACAAAGGGAAAGGCAA+AGG | 0.637371 | 3_2:-78050689 | Msa0427350:CDS |
| ATTCATATATGGGGATGCAG+TGG | 0.646143 | 3_2:-78050905 | Msa0427350:CDS |
| CTCTCCATGGACATGAGAGG+TGG | 0.646702 | 3_2:+78050576 | None:intergenic |
| GTACTCTCCATGGACATGAG+AGG | 0.646753 | 3_2:+78050573 | None:intergenic |
| TGATGCTGATGCTTCATGGT+GGG | 0.646760 | 3_2:-78051093 | Msa0427350:CDS |
| TTATTCCTAAAAGCAAGACC+GGG | 0.648563 | 3_2:+78051281 | None:intergenic |
| ATGGGTGAGATCCGTAAATG+TGG | 0.672000 | 3_2:-78051308 | Msa0427350:CDS |
| TGAATTGGAATTCATATATG+GGG | 0.675974 | 3_2:-78050914 | Msa0427350:CDS |
| TTGGGATGGAATCCTCAGGT+AGG | 0.678607 | 3_2:-78051122 | Msa0427350:CDS |
| TTGATGCTGATGCTTCATGG+TGG | 0.719368 | 3_2:-78051094 | Msa0427350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACAAGAGAAAATATTT+AGG | + | chr3_2:78050779-78050798 | None:intergenic | 15.0% |
| !!! | TAAATATTTTCTCTTGTTAT+TGG | - | chr3_2:78050778-78050797 | Msa0427350:CDS | 15.0% |
| !! | AATAACAAGAGAAAATATTT+AGG | + | chr3_2:78050779-78050798 | None:intergenic | 15.0% |
| !!! | TAAATATTTTCTCTTGTTAT+TGG | - | chr3_2:78050778-78050797 | Msa0427350:CDS | 15.0% |
| !!! | ACATAAGTCAAGTAAAATTT+TGG | + | chr3_2:78050445-78050464 | None:intergenic | 20.0% |
| !!! | AATTTTACTTGACTTATGTA+TGG | - | chr3_2:78050446-78050465 | Msa0427350:CDS | 20.0% |
| !!! | ATTTTACTTGACTTATGTAT+GGG | - | chr3_2:78050447-78050466 | Msa0427350:CDS | 20.0% |
| !!! | TATTTAAAATTTCGCTATCA+AGG | - | chr3_2:78050821-78050840 | Msa0427350:CDS | 20.0% |
| !! | ATGAATTGGAATTCATATAT+GGG | - | chr3_2:78050858-78050877 | Msa0427350:CDS | 20.0% |
| !!! | TAAATTATTGAAAAGTGCAA+AGG | - | chr3_2:78051240-78051259 | Msa0427350:CDS | 20.0% |
| !!! | ACATAAGTCAAGTAAAATTT+TGG | + | chr3_2:78050445-78050464 | None:intergenic | 20.0% |
| !!! | AATTTTACTTGACTTATGTA+TGG | - | chr3_2:78050446-78050465 | Msa0427350:CDS | 20.0% |
| !!! | ATTTTACTTGACTTATGTAT+GGG | - | chr3_2:78050447-78050466 | Msa0427350:CDS | 20.0% |
| !!! | TATTTAAAATTTCGCTATCA+AGG | - | chr3_2:78050821-78050840 | Msa0427350:CDS | 20.0% |
| !! | ATGAATTGGAATTCATATAT+GGG | - | chr3_2:78050858-78050877 | Msa0427350:CDS | 20.0% |
| !!! | TAAATTATTGAAAAGTGCAA+AGG | - | chr3_2:78051240-78051259 | Msa0427350:CDS | 20.0% |
| ! | AAAATTCAGTAAAAGCAACT+TGG | - | chr3_2:78050403-78050422 | Msa0427350:CDS | 25.0% |
| !!! | AGTAAAATTTTGGTATCTGA+TGG | + | chr3_2:78050435-78050454 | None:intergenic | 25.0% |
| !!! | TTGCTTTTAGGAATAAGAAA+TGG | - | chr3_2:78050499-78050518 | Msa0427350:CDS | 25.0% |
| !!! | TGCTTTTAGGAATAAGAAAT+GGG | - | chr3_2:78050500-78050519 | Msa0427350:CDS | 25.0% |
| !!! | TTCTATTTTTCAACTGCTTT+TGG | + | chr3_2:78050572-78050591 | None:intergenic | 25.0% |
| ! | AAAGCAGTTGAAAAATAGAA+TGG | - | chr3_2:78050572-78050591 | Msa0427350:CDS | 25.0% |
| ! | CAATTAATTGGTAAAGAAAC+AGG | - | chr3_2:78050627-78050646 | Msa0427350:CDS | 25.0% |
| ! | GATGAATTGGAATTCATATA+TGG | - | chr3_2:78050857-78050876 | Msa0427350:CDS | 25.0% |
| ! | TGAATTGGAATTCATATATG+GGG | - | chr3_2:78050859-78050878 | Msa0427350:CDS | 25.0% |
| !! | TTTTTGCCATTAGATTCTAA+TGG | + | chr3_2:78050932-78050951 | None:intergenic | 25.0% |
| !! | GATGATAGTGAATTTGATAT+TGG | - | chr3_2:78050989-78051008 | Msa0427350:intron | 25.0% |
| ! | TCAACCAAAAAAGAAAAGAA+AGG | - | chr3_2:78051039-78051058 | Msa0427350:intron | 25.0% |
| !! | GAAACCTTTCTTTTCTTTTT+TGG | + | chr3_2:78051046-78051065 | None:intergenic | 25.0% |
| ! | TTCAATAATTTAACGCAATC+TGG | + | chr3_2:78051232-78051251 | None:intergenic | 25.0% |
| !!! | ACTCTTTTAAGGTTATTAGT+AGG | + | chr3_2:78051336-78051355 | None:intergenic | 25.0% |
| ! | AAAATTCAGTAAAAGCAACT+TGG | - | chr3_2:78050403-78050422 | Msa0427350:CDS | 25.0% |
| !!! | AGTAAAATTTTGGTATCTGA+TGG | + | chr3_2:78050435-78050454 | None:intergenic | 25.0% |
| !!! | TTGCTTTTAGGAATAAGAAA+TGG | - | chr3_2:78050499-78050518 | Msa0427350:CDS | 25.0% |
| !!! | TGCTTTTAGGAATAAGAAAT+GGG | - | chr3_2:78050500-78050519 | Msa0427350:CDS | 25.0% |
| !!! | TTCTATTTTTCAACTGCTTT+TGG | + | chr3_2:78050572-78050591 | None:intergenic | 25.0% |
| ! | AAAGCAGTTGAAAAATAGAA+TGG | - | chr3_2:78050572-78050591 | Msa0427350:CDS | 25.0% |
| ! | CAATTAATTGGTAAAGAAAC+AGG | - | chr3_2:78050627-78050646 | Msa0427350:CDS | 25.0% |
| ! | GATGAATTGGAATTCATATA+TGG | - | chr3_2:78050857-78050876 | Msa0427350:CDS | 25.0% |
| ! | TGAATTGGAATTCATATATG+GGG | - | chr3_2:78050859-78050878 | Msa0427350:CDS | 25.0% |
| !! | TTTTTGCCATTAGATTCTAA+TGG | + | chr3_2:78050932-78050951 | None:intergenic | 25.0% |
| !! | GATGATAGTGAATTTGATAT+TGG | - | chr3_2:78050989-78051008 | Msa0427350:intron | 25.0% |
| ! | TCAACCAAAAAAGAAAAGAA+AGG | - | chr3_2:78051039-78051058 | Msa0427350:intron | 25.0% |
| !! | GAAACCTTTCTTTTCTTTTT+TGG | + | chr3_2:78051046-78051065 | None:intergenic | 25.0% |
| ! | TTCAATAATTTAACGCAATC+TGG | + | chr3_2:78051232-78051251 | None:intergenic | 25.0% |
| !!! | ACTCTTTTAAGGTTATTAGT+AGG | + | chr3_2:78051336-78051355 | None:intergenic | 25.0% |
| !! | TTTTAGGAATAAGAAATGGG+AGG | - | chr3_2:78050503-78050522 | Msa0427350:CDS | 30.0% |
| ACGACATGGAAACAATTAAT+TGG | - | chr3_2:78050615-78050634 | Msa0427350:CDS | 30.0% | |
| AATTGGTAAAGAAACAGGTT+TGG | - | chr3_2:78050632-78050651 | Msa0427350:CDS | 30.0% | |
| ATTGGTAAAGAAACAGGTTT+GGG | - | chr3_2:78050633-78050652 | Msa0427350:CDS | 30.0% | |
| AAAATTTCGCTATCAAGGTT+TGG | - | chr3_2:78050826-78050845 | Msa0427350:CDS | 30.0% | |
| ! | TTTGGAATTTCGTGATGAAT+TGG | - | chr3_2:78050844-78050863 | Msa0427350:CDS | 30.0% |
| ! | TCAGAGTCAATTATTTCTTG+TGG | + | chr3_2:78050971-78050990 | None:intergenic | 30.0% |
| AGAAAGGTTTCACCAAATAT+TGG | - | chr3_2:78051055-78051074 | Msa0427350:intron | 30.0% | |
| CTATGAGAAAAACATTTGAG+CGG | - | chr3_2:78051122-78051141 | Msa0427350:CDS | 30.0% | |
| AGGTCATAATGAAGTTGAAA+AGG | - | chr3_2:78051162-78051181 | Msa0427350:CDS | 30.0% | |
| !!! | AAGGATGATGGTTTTTTGAA+TGG | - | chr3_2:78051259-78051278 | Msa0427350:CDS | 30.0% |
| AATAACCTTAAAAGAGTCGA+AGG | - | chr3_2:78051339-78051358 | Msa0427350:CDS | 30.0% | |
| !! | TTTTAGGAATAAGAAATGGG+AGG | - | chr3_2:78050503-78050522 | Msa0427350:CDS | 30.0% |
| ACGACATGGAAACAATTAAT+TGG | - | chr3_2:78050615-78050634 | Msa0427350:CDS | 30.0% | |
| AATTGGTAAAGAAACAGGTT+TGG | - | chr3_2:78050632-78050651 | Msa0427350:CDS | 30.0% | |
| ATTGGTAAAGAAACAGGTTT+GGG | - | chr3_2:78050633-78050652 | Msa0427350:CDS | 30.0% | |
| AAAATTTCGCTATCAAGGTT+TGG | - | chr3_2:78050826-78050845 | Msa0427350:CDS | 30.0% | |
| ! | TTTGGAATTTCGTGATGAAT+TGG | - | chr3_2:78050844-78050863 | Msa0427350:CDS | 30.0% |
| ! | TCAGAGTCAATTATTTCTTG+TGG | + | chr3_2:78050971-78050990 | None:intergenic | 30.0% |
| AGAAAGGTTTCACCAAATAT+TGG | - | chr3_2:78051055-78051074 | Msa0427350:intron | 30.0% | |
| CTATGAGAAAAACATTTGAG+CGG | - | chr3_2:78051122-78051141 | Msa0427350:CDS | 30.0% | |
| AGGTCATAATGAAGTTGAAA+AGG | - | chr3_2:78051162-78051181 | Msa0427350:CDS | 30.0% | |
| !!! | AAGGATGATGGTTTTTTGAA+TGG | - | chr3_2:78051259-78051278 | Msa0427350:CDS | 30.0% |
| AATAACCTTAAAAGAGTCGA+AGG | - | chr3_2:78051339-78051358 | Msa0427350:CDS | 30.0% | |
| TTATTCCTAAAAGCAAGACC+GGG | + | chr3_2:78050495-78050514 | None:intergenic | 35.0% | |
| CTTATTCCTAAAAGCAAGAC+CGG | + | chr3_2:78050496-78050515 | None:intergenic | 35.0% | |
| !! | TGGATGCTTTGAGAAATGAT+TGG | - | chr3_2:78050592-78050611 | Msa0427350:CDS | 35.0% |
| ATATTGATGCTGATGCTTCA+TGG | - | chr3_2:78050676-78050695 | Msa0427350:CDS | 35.0% | |
| !! | TCTCTTGTTATTGGTTATGC+AGG | - | chr3_2:78050787-78050806 | Msa0427350:CDS | 35.0% |
| ! | TTGGTTGAGTATTTTCCAGA+GGG | + | chr3_2:78051027-78051046 | None:intergenic | 35.0% |
| ! | TTTGGTTGAGTATTTTCCAG+AGG | + | chr3_2:78051028-78051047 | None:intergenic | 35.0% |
| ! | GTCACTTTCTCTCCAATATT+TGG | + | chr3_2:78051070-78051089 | None:intergenic | 35.0% |
| TATTGGAGAGAAAGTGACAA+AGG | - | chr3_2:78051072-78051091 | Msa0427350:intron | 35.0% | |
| ATTGGAGAGAAAGTGACAAA+GGG | - | chr3_2:78051073-78051092 | Msa0427350:intron | 35.0% | |
| AGTTGAAAAGGCTCAAATTG+CGG | - | chr3_2:78051174-78051193 | Msa0427350:CDS | 35.0% | |
| ! | TTGAAAAGTGCAAAGGATGA+TGG | - | chr3_2:78051247-78051266 | Msa0427350:CDS | 35.0% |
| ! | ATCTTCCTTCGACTCTTTTA+AGG | + | chr3_2:78051347-78051366 | None:intergenic | 35.0% |
| AAAAGAGTCGAAGGAAGATT+TGG | - | chr3_2:78051348-78051367 | Msa0427350:CDS | 35.0% | |
| TTATTCCTAAAAGCAAGACC+GGG | + | chr3_2:78050495-78050514 | None:intergenic | 35.0% | |
| CTTATTCCTAAAAGCAAGAC+CGG | + | chr3_2:78050496-78050515 | None:intergenic | 35.0% | |
| !! | TGGATGCTTTGAGAAATGAT+TGG | - | chr3_2:78050592-78050611 | Msa0427350:CDS | 35.0% |
| ATATTGATGCTGATGCTTCA+TGG | - | chr3_2:78050676-78050695 | Msa0427350:CDS | 35.0% | |
| !! | TCTCTTGTTATTGGTTATGC+AGG | - | chr3_2:78050787-78050806 | Msa0427350:CDS | 35.0% |
| ! | TTGGTTGAGTATTTTCCAGA+GGG | + | chr3_2:78051027-78051046 | None:intergenic | 35.0% |
| ! | TTTGGTTGAGTATTTTCCAG+AGG | + | chr3_2:78051028-78051047 | None:intergenic | 35.0% |
| ! | GTCACTTTCTCTCCAATATT+TGG | + | chr3_2:78051070-78051089 | None:intergenic | 35.0% |
| TATTGGAGAGAAAGTGACAA+AGG | - | chr3_2:78051072-78051091 | Msa0427350:intron | 35.0% | |
| ATTGGAGAGAAAGTGACAAA+GGG | - | chr3_2:78051073-78051092 | Msa0427350:intron | 35.0% | |
| AGTTGAAAAGGCTCAAATTG+CGG | - | chr3_2:78051174-78051193 | Msa0427350:CDS | 35.0% | |
| ! | TTGAAAAGTGCAAAGGATGA+TGG | - | chr3_2:78051247-78051266 | Msa0427350:CDS | 35.0% |
| ! | ATCTTCCTTCGACTCTTTTA+AGG | + | chr3_2:78051347-78051366 | None:intergenic | 35.0% |
| AAAAGAGTCGAAGGAAGATT+TGG | - | chr3_2:78051348-78051367 | Msa0427350:CDS | 35.0% | |
| TGAGAAATGATTGGACGACA+TGG | - | chr3_2:78050601-78050620 | Msa0427350:CDS | 40.0% | |
| GTAAAGAAACAGGTTTGGGA+TGG | - | chr3_2:78050637-78050656 | Msa0427350:CDS | 40.0% | |
| GCATCAATATTTCCTACCTG+AGG | + | chr3_2:78050666-78050685 | None:intergenic | 40.0% | |
| ! | ATGGTGGGATGCTAAGATAA+GGG | - | chr3_2:78050695-78050714 | Msa0427350:CDS | 40.0% |
| ATTCATATATGGGGATGCAG+TGG | - | chr3_2:78050868-78050887 | Msa0427350:CDS | 40.0% | |
| ! | GGTGTGCCATTAGAATCTAA+TGG | - | chr3_2:78050923-78050942 | Msa0427350:CDS | 40.0% |
| ! | TATTTTCCAGAGGGCTAAAG+TGG | + | chr3_2:78051018-78051037 | None:intergenic | 40.0% |
| AGAGAAAGTGACAAAGGGAA+AGG | - | chr3_2:78051078-78051097 | Msa0427350:intron | 40.0% | |
| TGAGAAATGATTGGACGACA+TGG | - | chr3_2:78050601-78050620 | Msa0427350:CDS | 40.0% | |
| GTAAAGAAACAGGTTTGGGA+TGG | - | chr3_2:78050637-78050656 | Msa0427350:CDS | 40.0% | |
| GCATCAATATTTCCTACCTG+AGG | + | chr3_2:78050666-78050685 | None:intergenic | 40.0% | |
| ! | ATGGTGGGATGCTAAGATAA+GGG | - | chr3_2:78050695-78050714 | Msa0427350:CDS | 40.0% |
| ATTCATATATGGGGATGCAG+TGG | - | chr3_2:78050868-78050887 | Msa0427350:CDS | 40.0% | |
| ! | GGTGTGCCATTAGAATCTAA+TGG | - | chr3_2:78050923-78050942 | Msa0427350:CDS | 40.0% |
| ! | TATTTTCCAGAGGGCTAAAG+TGG | + | chr3_2:78051018-78051037 | None:intergenic | 40.0% |
| AGAGAAAGTGACAAAGGGAA+AGG | - | chr3_2:78051078-78051097 | Msa0427350:intron | 40.0% | |
| ATGGGTGAGATCCGTAAATG+TGG | - | chr3_2:78050465-78050484 | Msa0427350:CDS | 45.0% | |
| ATCCGTAAATGTGGAAAGCC+CGG | - | chr3_2:78050474-78050493 | Msa0427350:CDS | 45.0% | |
| TTGATGCTGATGCTTCATGG+TGG | - | chr3_2:78050679-78050698 | Msa0427350:CDS | 45.0% | |
| TGATGCTGATGCTTCATGGT+GGG | - | chr3_2:78050680-78050699 | Msa0427350:CDS | 45.0% | |
| ! | CATGGTGGGATGCTAAGATA+AGG | - | chr3_2:78050694-78050713 | Msa0427350:CDS | 45.0% |
| TGGCAACAAGTCAACACCAA+TGG | - | chr3_2:78050888-78050907 | Msa0427350:CDS | 45.0% | |
| AGTGACAAAGGGAAAGGCAA+AGG | - | chr3_2:78051084-78051103 | Msa0427350:CDS | 45.0% | |
| ACAAAGGGAAAGGCAAAGGT+TGG | - | chr3_2:78051088-78051107 | Msa0427350:CDS | 45.0% | |
| CAAAGGGAAAGGCAAAGGTT+GGG | - | chr3_2:78051089-78051108 | Msa0427350:CDS | 45.0% | |
| ! | CTGGAATAGAGTACTCTCCA+TGG | + | chr3_2:78051213-78051232 | None:intergenic | 45.0% |
| ! | CGAAGGAAGATTTGGTAGAG+TGG | - | chr3_2:78051356-78051375 | Msa0427350:CDS | 45.0% |
| ATGGGTGAGATCCGTAAATG+TGG | - | chr3_2:78050465-78050484 | Msa0427350:CDS | 45.0% | |
| ATCCGTAAATGTGGAAAGCC+CGG | - | chr3_2:78050474-78050493 | Msa0427350:CDS | 45.0% | |
| TTGATGCTGATGCTTCATGG+TGG | - | chr3_2:78050679-78050698 | Msa0427350:CDS | 45.0% | |
| TGATGCTGATGCTTCATGGT+GGG | - | chr3_2:78050680-78050699 | Msa0427350:CDS | 45.0% | |
| ! | CATGGTGGGATGCTAAGATA+AGG | - | chr3_2:78050694-78050713 | Msa0427350:CDS | 45.0% |
| TGGCAACAAGTCAACACCAA+TGG | - | chr3_2:78050888-78050907 | Msa0427350:CDS | 45.0% | |
| AGTGACAAAGGGAAAGGCAA+AGG | - | chr3_2:78051084-78051103 | Msa0427350:CDS | 45.0% | |
| ACAAAGGGAAAGGCAAAGGT+TGG | - | chr3_2:78051088-78051107 | Msa0427350:CDS | 45.0% | |
| CAAAGGGAAAGGCAAAGGTT+GGG | - | chr3_2:78051089-78051108 | Msa0427350:CDS | 45.0% | |
| ! | CTGGAATAGAGTACTCTCCA+TGG | + | chr3_2:78051213-78051232 | None:intergenic | 45.0% |
| ! | CGAAGGAAGATTTGGTAGAG+TGG | - | chr3_2:78051356-78051375 | Msa0427350:CDS | 45.0% |
| GACCGGGCTTTCCACATTTA+CGG | + | chr3_2:78050479-78050498 | None:intergenic | 50.0% | |
| !! | GAAAGCCCGGTCTTGCTTTT+AGG | - | chr3_2:78050487-78050506 | Msa0427350:CDS | 50.0% |
| ! | AGGTTTGGGATGGAATCCTC+AGG | - | chr3_2:78050647-78050666 | Msa0427350:CDS | 50.0% |
| TTGGGATGGAATCCTCAGGT+AGG | - | chr3_2:78050651-78050670 | Msa0427350:CDS | 50.0% | |
| ACACCAATGGACACCAGCTT+TGG | - | chr3_2:78050901-78050920 | Msa0427350:CDS | 50.0% | |
| CACCAATGGACACCAGCTTT+GGG | - | chr3_2:78050902-78050921 | Msa0427350:CDS | 50.0% | |
| TCTAATGGCACACCCAAAGC+TGG | + | chr3_2:78050917-78050936 | None:intergenic | 50.0% | |
| ! | CGGTTAGTTGAAGCAGCTGA+AGG | - | chr3_2:78051142-78051161 | Msa0427350:CDS | 50.0% |
| GTACTCTCCATGGACATGAG+AGG | + | chr3_2:78051203-78051222 | None:intergenic | 50.0% | |
| GACCGGGCTTTCCACATTTA+CGG | + | chr3_2:78050479-78050498 | None:intergenic | 50.0% | |
| !! | GAAAGCCCGGTCTTGCTTTT+AGG | - | chr3_2:78050487-78050506 | Msa0427350:CDS | 50.0% |
| ! | AGGTTTGGGATGGAATCCTC+AGG | - | chr3_2:78050647-78050666 | Msa0427350:CDS | 50.0% |
| TTGGGATGGAATCCTCAGGT+AGG | - | chr3_2:78050651-78050670 | Msa0427350:CDS | 50.0% | |
| ACACCAATGGACACCAGCTT+TGG | - | chr3_2:78050901-78050920 | Msa0427350:CDS | 50.0% | |
| CACCAATGGACACCAGCTTT+GGG | - | chr3_2:78050902-78050921 | Msa0427350:CDS | 50.0% | |
| TCTAATGGCACACCCAAAGC+TGG | + | chr3_2:78050917-78050936 | None:intergenic | 50.0% | |
| ! | CGGTTAGTTGAAGCAGCTGA+AGG | - | chr3_2:78051142-78051161 | Msa0427350:CDS | 50.0% |
| GTACTCTCCATGGACATGAG+AGG | + | chr3_2:78051203-78051222 | None:intergenic | 50.0% | |
| CACCCAAAGCTGGTGTCCAT+TGG | + | chr3_2:78050907-78050926 | None:intergenic | 55.0% | |
| TGGTGACCACTTTAGCCCTC+TGG | - | chr3_2:78051009-78051028 | Msa0427350:intron | 55.0% | |
| CTCTCCATGGACATGAGAGG+TGG | + | chr3_2:78051200-78051219 | None:intergenic | 55.0% | |
| CACCCAAAGCTGGTGTCCAT+TGG | + | chr3_2:78050907-78050926 | None:intergenic | 55.0% | |
| TGGTGACCACTTTAGCCCTC+TGG | - | chr3_2:78051009-78051028 | Msa0427350:intron | 55.0% | |
| CTCTCCATGGACATGAGAGG+TGG | + | chr3_2:78051200-78051219 | None:intergenic | 55.0% | |
| GCGGCCACCTCTCATGTCCA+TGG | - | chr3_2:78051193-78051212 | Msa0427350:CDS | 65.0% | |
| GCGGCCACCTCTCATGTCCA+TGG | - | chr3_2:78051193-78051212 | Msa0427350:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 78050375 | 78051420 | 78050375 | ID=Msa0427350;Name=Msa0427350 |
| chr3_2 | mRNA | 78050375 | 78051420 | 78050375 | ID=Msa0427350-mRNA-1;Parent=Msa0427350;Name=Msa0427350-mRNA-1;_AED=0.04;_eAED=0.04;_QI=12|1|0.5|1|1|1|2|0|313 |
| chr3_2 | exon | 78050375 | 78050986 | 78050375 | ID=Msa0427350-mRNA-1:exon:20483;Parent=Msa0427350-mRNA-1 |
| chr3_2 | exon | 78051079 | 78051420 | 78051079 | ID=Msa0427350-mRNA-1:exon:20482;Parent=Msa0427350-mRNA-1 |
| chr3_2 | five_prime_UTR | 78051409 | 78051420 | 78051409 | ID=Msa0427350-mRNA-1:five_prime_utr;Parent=Msa0427350-mRNA-1 |
| chr3_2 | CDS | 78051079 | 78051408 | 78051079 | ID=Msa0427350-mRNA-1:cds;Parent=Msa0427350-mRNA-1 |
| chr3_2 | CDS | 78050375 | 78050986 | 78050375 | ID=Msa0427350-mRNA-1:cds;Parent=Msa0427350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
