Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269940 | XP_013468628.2 | 94.516 | 310 | 17 | 0 | 4 | 313 | 10 | 319 | 0.0 | 608 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269940 | sp|Q9FFJ8|LIMYB_ARATH | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.61e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269940 | A0A072VX43 | 93.548 | 310 | 20 | 0 | 4 | 313 | 10 | 319 | 0.0 | 603 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0084440 | Msa0269940 | 0.807512 | 4.876156e-50 | -8.615850e-47 |
| Msa0242320 | Msa0269940 | 0.810025 | 1.414743e-50 | -8.615850e-47 |
| Msa0269940 | Msa0319860 | 0.819940 | 8.917281e-53 | -8.615850e-47 |
| Msa0269940 | Msa0393570 | 0.832201 | 1.082134e-55 | -8.615850e-47 |
| Msa0269940 | Msa0427350 | 0.941826 | 2.111409e-101 | -8.615850e-47 |
| Msa0269940 | Msa0475870 | 0.897149 | 1.859363e-76 | -8.615850e-47 |
| Msa0269940 | Msa0719080 | 0.823580 | 1.283334e-53 | -8.615850e-47 |
| Msa0269940 | Msa0719090 | 0.827395 | 1.601677e-54 | -8.615850e-47 |
| Msa0269940 | Msa0719390 | 0.800959 | 1.128073e-48 | -8.615850e-47 |
| Msa0269940 | Msa1062220 | 0.899470 | 1.920052e-77 | -8.615850e-47 |
| Msa0269940 | Msa1155910 | 0.829327 | 5.476797e-55 | -8.615850e-47 |
| Msa0269940 | Msa1163330 | 0.848222 | 7.030827e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269940 | MtrunA17_Chr8g0362511 | 89.068 | 311 | 34 | 0 | 3 | 313 | 61 | 371 | 0.0 | 576 |
| Msa0269940 | MtrunA17_Chr5g0402821 | 53.355 | 313 | 123 | 6 | 10 | 305 | 16 | 322 | 2.44e-107 | 315 |
| Msa0269940 | MtrunA17_Chr3g0098031 | 81.928 | 83 | 15 | 0 | 109 | 191 | 1 | 83 | 3.71e-45 | 148 |
| Msa0269940 | MtrunA17_Chr1g0172741 | 32.114 | 246 | 149 | 5 | 2 | 233 | 14 | 255 | 3.97e-35 | 129 |
| Msa0269940 | MtrunA17_Chr2g0285481 | 32.114 | 246 | 149 | 5 | 2 | 233 | 14 | 255 | 4.01e-35 | 129 |
| Msa0269940 | MtrunA17_Chr8g0334551 | 33.898 | 177 | 99 | 2 | 10 | 186 | 22 | 180 | 1.21e-28 | 112 |
| Msa0269940 | MtrunA17_Chr2g0321391 | 31.844 | 179 | 105 | 4 | 68 | 233 | 3 | 177 | 1.99e-21 | 91.3 |
| Msa0269940 | MtrunA17_Chr3g0113081 | 24.579 | 297 | 166 | 9 | 1 | 291 | 374 | 618 | 1.72e-19 | 89.0 |
| Msa0269940 | MtrunA17_Chr3g0113081 | 29.677 | 155 | 105 | 3 | 10 | 164 | 185 | 335 | 3.60e-18 | 85.1 |
| Msa0269940 | MtrunA17_Chr3g0113081 | 30.645 | 124 | 84 | 2 | 10 | 133 | 8 | 129 | 3.55e-15 | 76.3 |
| Msa0269940 | MtrunA17_Chr5g0422691 | 40.217 | 92 | 54 | 1 | 2 | 92 | 14 | 105 | 2.31e-17 | 76.3 |
| Msa0269940 | MtrunA17_Chr7g0254281 | 39.726 | 73 | 44 | 0 | 233 | 305 | 15 | 87 | 9.02e-14 | 66.2 |
| Msa0269940 | MtrunA17_Chr5g0405761 | 23.129 | 294 | 205 | 7 | 1 | 294 | 41 | 313 | 3.96e-12 | 65.9 |
| Msa0269940 | MtrunA17_Chr1g0176881 | 27.500 | 120 | 86 | 1 | 16 | 135 | 198 | 316 | 3.84e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269940 | AT5G05800.1 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.65e-14 | 73.6 |
| Msa0269940 | AT5G05800.5 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.65e-14 | 73.6 |
| Msa0269940 | AT5G05800.3 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.65e-14 | 73.6 |
| Msa0269940 | AT5G05800.2 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.65e-14 | 73.6 |
| Msa0269940 | AT5G05800.4 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.65e-14 | 73.6 |
| Msa0269940 | AT3G11290.2 | 23.569 | 297 | 194 | 7 | 10 | 293 | 165 | 441 | 1.00e-10 | 62.8 |
| Msa0269940 | AT3G11290.1 | 23.569 | 297 | 194 | 7 | 10 | 293 | 165 | 441 | 1.00e-10 | 62.8 |
Find 61 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCACTTTCTCTCCAATATT+TGG | 0.180945 | 2_3:+1195371 | None:intergenic |
| TAAGAAACCATCTAATATTT+AGG | 0.205786 | 2_3:-1195039 | None:intergenic |
| ACATAAGTCAAGTAAAATTT+TGG | 0.222616 | 2_3:+1195996 | None:intergenic |
| ACGACATGGAAACAATTAAT+TGG | 0.237993 | 2_3:-1195823 | Msa0269940:CDS |
| GATGAATTGGAATTCATATA+TGG | 0.262668 | 2_3:-1195581 | Msa0269940:CDS |
| TTCAATAATTTAACGCAATC+TGG | 0.268422 | 2_3:+1195209 | None:intergenic |
| AGAAAGGTTTCACCAAATAT+TGG | 0.287033 | 2_3:-1195383 | Msa0269940:CDS |
| TTTGGAATTTCGTGATGAAT+TGG | 0.307078 | 2_3:-1195594 | Msa0269940:CDS |
| GACCGGGCTTTCCACATTTA+CGG | 0.308674 | 2_3:+1195962 | None:intergenic |
| ATCTTAACCTAAATATTAGA+TGG | 0.348450 | 2_3:+1195032 | None:intergenic |
| AAAAGAGTCGAAGGAAGATT+TGG | 0.364686 | 2_3:-1195090 | Msa0269940:CDS |
| CAATTAATTGGTAAAGAAAC+AGG | 0.372346 | 2_3:-1195811 | Msa0269940:CDS |
| ATTGGTAAAGAAACAGGTTT+GGG | 0.383062 | 2_3:-1195805 | Msa0269940:CDS |
| AAAATTTCGCTATCAAGGTT+TGG | 0.385837 | 2_3:-1195612 | Msa0269940:CDS |
| ACACCAATGGACACCAGCTT+TGG | 0.388131 | 2_3:-1195537 | Msa0269940:CDS |
| GATGATAGTGAATTTGATAT+TGG | 0.393251 | 2_3:-1195449 | Msa0269940:CDS |
| TATTTAAAATTTCGCTATCA+AGG | 0.406698 | 2_3:-1195617 | Msa0269940:CDS |
| AATTGGTAAAGAAACAGGTT+TGG | 0.414579 | 2_3:-1195806 | Msa0269940:CDS |
| CACCAATGGACACCAGCTTT+GGG | 0.429567 | 2_3:-1195536 | Msa0269940:CDS |
| TTGAAAAGTGCAAAGGATGA+TGG | 0.438052 | 2_3:-1195191 | Msa0269940:CDS |
| ATTAAGGTATATTGCAGCTA+TGG | 0.438851 | 2_3:-1196070 | None:intergenic |
| ATGAATTGGAATTCATATAT+GGG | 0.451875 | 2_3:-1195580 | Msa0269940:CDS |
| TGGTGACCACTTTAGCCCTC+TGG | 0.472733 | 2_3:-1195429 | Msa0269940:CDS |
| CTTATTCCTAAAAGCAAGAC+CGG | 0.476233 | 2_3:+1195945 | None:intergenic |
| CATGGTGGGATGCTAAGATA+AGG | 0.494064 | 2_3:-1195744 | Msa0269940:CDS |
| AGGTCATAATGAAGTTGAAA+AGG | 0.499240 | 2_3:-1195276 | Msa0269940:CDS |
| ATATTGATGCTGATGCTTCA+TGG | 0.500130 | 2_3:-1195762 | Msa0269940:CDS |
| ATCCGTAAATGTGGAAAGCC+CGG | 0.502131 | 2_3:-1195964 | Msa0269940:CDS |
| ACAAAGGGAAAGGCAAAGGT+TGG | 0.515623 | 2_3:-1195350 | Msa0269940:CDS |
| CACCCAAAGCTGGTGTCCAT+TGG | 0.517260 | 2_3:+1195534 | None:intergenic |
| TCAGAGTCAATTATTTCTTG+TGG | 0.529496 | 2_3:+1195470 | None:intergenic |
| TGGATGCTTTGAGAAATGAT+TGG | 0.530048 | 2_3:-1195846 | Msa0269940:CDS |
| GGTGTGCCATTAGAATCTAA+TGG | 0.531870 | 2_3:-1195515 | Msa0269940:CDS |
| GTAAAGAAACAGGTTTGGGA+TGG | 0.538168 | 2_3:-1195801 | Msa0269940:CDS |
| ATTGGAGAGAAAGTGACAAA+GGG | 0.539994 | 2_3:-1195365 | Msa0269940:CDS |
| TCTAATGGCACACCCAAAGC+TGG | 0.551818 | 2_3:+1195524 | None:intergenic |
| AAAATTCAGTAAAAGCAACT+TGG | 0.557465 | 2_3:-1196035 | Msa0269940:CDS |
| TAAATTATTGAAAAGTGCAA+AGG | 0.562498 | 2_3:-1195198 | Msa0269940:CDS |
| ATGGTGGGATGCTAAGATAA+GGG | 0.562867 | 2_3:-1195743 | Msa0269940:intron |
| CAAAGGGAAAGGCAAAGGTT+GGG | 0.568855 | 2_3:-1195349 | Msa0269940:CDS |
| GCGGCCACCTCTCATGTCCA+TGG | 0.573543 | 2_3:-1195245 | Msa0269940:CDS |
| TGAGAAATGATTGGACGACA+TGG | 0.575579 | 2_3:-1195837 | Msa0269940:CDS |
| CTGGAATAGAGTACTCTCCA+TGG | 0.582152 | 2_3:+1195228 | None:intergenic |
| AATAACCTTAAAAGAGTCGA+AGG | 0.582919 | 2_3:-1195099 | Msa0269940:CDS |
| AGGTTTGGGATGGAATCCTC+AGG | 0.587284 | 2_3:-1195791 | Msa0269940:CDS |
| TATTGGAGAGAAAGTGACAA+AGG | 0.587956 | 2_3:-1195366 | Msa0269940:CDS |
| CGGTTAGTTGAAGCAGCTGA+AGG | 0.604811 | 2_3:-1195296 | Msa0269940:CDS |
| TGGCAACAAGTCAACACCAA+TGG | 0.615706 | 2_3:-1195550 | Msa0269940:CDS |
| GCATCAATATTTCCTACCTG+AGG | 0.624235 | 2_3:+1195775 | None:intergenic |
| AGTTGAAAAGGCTCAAATTG+CGG | 0.627899 | 2_3:-1195264 | Msa0269940:CDS |
| AGAGAAAGTGACAAAGGGAA+AGG | 0.634836 | 2_3:-1195360 | Msa0269940:CDS |
| AGTGACAAAGGGAAAGGCAA+AGG | 0.637371 | 2_3:-1195354 | Msa0269940:CDS |
| ATTCATATATGGGGATGCAG+TGG | 0.646143 | 2_3:-1195570 | Msa0269940:CDS |
| CTCTCCATGGACATGAGAGG+TGG | 0.646702 | 2_3:+1195241 | None:intergenic |
| GTACTCTCCATGGACATGAG+AGG | 0.646753 | 2_3:+1195238 | None:intergenic |
| TGATGCTGATGCTTCATGGT+GGG | 0.646760 | 2_3:-1195758 | Msa0269940:CDS |
| TTATTCCTAAAAGCAAGACC+GGG | 0.648563 | 2_3:+1195946 | None:intergenic |
| ATGGGTGAGATCCGTAAATG+TGG | 0.672000 | 2_3:-1195973 | Msa0269940:CDS |
| TGAATTGGAATTCATATATG+GGG | 0.675974 | 2_3:-1195579 | Msa0269940:CDS |
| TTGGGATGGAATCCTCAGGT+AGG | 0.678607 | 2_3:-1195787 | Msa0269940:CDS |
| TTGATGCTGATGCTTCATGG+TGG | 0.719368 | 2_3:-1195759 | Msa0269940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACAAGAGAAAATATTT+AGG | + | chr2_3:1195444-1195463 | None:intergenic | 15.0% |
| !!! | TAAATATTTTCTCTTGTTAT+TGG | - | chr2_3:1195443-1195462 | Msa0269940:CDS | 15.0% |
| !! | AATAACAAGAGAAAATATTT+AGG | + | chr2_3:1195444-1195463 | None:intergenic | 15.0% |
| !!! | TAAATATTTTCTCTTGTTAT+TGG | - | chr2_3:1195443-1195462 | Msa0269940:CDS | 15.0% |
| !!! | ACATAAGTCAAGTAAAATTT+TGG | + | chr2_3:1195110-1195129 | None:intergenic | 20.0% |
| !!! | AATTTTACTTGACTTATGTA+TGG | - | chr2_3:1195111-1195130 | Msa0269940:CDS | 20.0% |
| !!! | ATTTTACTTGACTTATGTAT+GGG | - | chr2_3:1195112-1195131 | Msa0269940:CDS | 20.0% |
| !!! | TATTTAAAATTTCGCTATCA+AGG | - | chr2_3:1195486-1195505 | Msa0269940:CDS | 20.0% |
| !! | ATGAATTGGAATTCATATAT+GGG | - | chr2_3:1195523-1195542 | Msa0269940:CDS | 20.0% |
| !!! | TAAATTATTGAAAAGTGCAA+AGG | - | chr2_3:1195905-1195924 | Msa0269940:CDS | 20.0% |
| !!! | ACATAAGTCAAGTAAAATTT+TGG | + | chr2_3:1195110-1195129 | None:intergenic | 20.0% |
| !!! | AATTTTACTTGACTTATGTA+TGG | - | chr2_3:1195111-1195130 | Msa0269940:CDS | 20.0% |
| !!! | ATTTTACTTGACTTATGTAT+GGG | - | chr2_3:1195112-1195131 | Msa0269940:CDS | 20.0% |
| !!! | TATTTAAAATTTCGCTATCA+AGG | - | chr2_3:1195486-1195505 | Msa0269940:CDS | 20.0% |
| !! | ATGAATTGGAATTCATATAT+GGG | - | chr2_3:1195523-1195542 | Msa0269940:CDS | 20.0% |
| !!! | TAAATTATTGAAAAGTGCAA+AGG | - | chr2_3:1195905-1195924 | Msa0269940:CDS | 20.0% |
| ! | AAAATTCAGTAAAAGCAACT+TGG | - | chr2_3:1195068-1195087 | Msa0269940:CDS | 25.0% |
| !!! | AGTAAAATTTTGGTATCTGA+TGG | + | chr2_3:1195100-1195119 | None:intergenic | 25.0% |
| !!! | TTGCTTTTAGGAATAAGAAA+TGG | - | chr2_3:1195164-1195183 | Msa0269940:CDS | 25.0% |
| !!! | TGCTTTTAGGAATAAGAAAT+GGG | - | chr2_3:1195165-1195184 | Msa0269940:CDS | 25.0% |
| !!! | TTCTATTTTTCAACTGCTTT+TGG | + | chr2_3:1195237-1195256 | None:intergenic | 25.0% |
| ! | AAAGCAGTTGAAAAATAGAA+TGG | - | chr2_3:1195237-1195256 | Msa0269940:CDS | 25.0% |
| ! | CAATTAATTGGTAAAGAAAC+AGG | - | chr2_3:1195292-1195311 | Msa0269940:CDS | 25.0% |
| ! | GATGAATTGGAATTCATATA+TGG | - | chr2_3:1195522-1195541 | Msa0269940:CDS | 25.0% |
| ! | TGAATTGGAATTCATATATG+GGG | - | chr2_3:1195524-1195543 | Msa0269940:CDS | 25.0% |
| !! | TTTTTGCCATTAGATTCTAA+TGG | + | chr2_3:1195597-1195616 | None:intergenic | 25.0% |
| !! | GATGATAGTGAATTTGATAT+TGG | - | chr2_3:1195654-1195673 | Msa0269940:intron | 25.0% |
| ! | TCAACCAAAAAAGAAAAGAA+AGG | - | chr2_3:1195704-1195723 | Msa0269940:intron | 25.0% |
| !! | GAAACCTTTCTTTTCTTTTT+TGG | + | chr2_3:1195711-1195730 | None:intergenic | 25.0% |
| ! | TTCAATAATTTAACGCAATC+TGG | + | chr2_3:1195897-1195916 | None:intergenic | 25.0% |
| !!! | ACTCTTTTAAGGTTATTAGT+AGG | + | chr2_3:1196001-1196020 | None:intergenic | 25.0% |
| ! | AAAATTCAGTAAAAGCAACT+TGG | - | chr2_3:1195068-1195087 | Msa0269940:CDS | 25.0% |
| !!! | AGTAAAATTTTGGTATCTGA+TGG | + | chr2_3:1195100-1195119 | None:intergenic | 25.0% |
| !!! | TTGCTTTTAGGAATAAGAAA+TGG | - | chr2_3:1195164-1195183 | Msa0269940:CDS | 25.0% |
| !!! | TGCTTTTAGGAATAAGAAAT+GGG | - | chr2_3:1195165-1195184 | Msa0269940:CDS | 25.0% |
| !!! | TTCTATTTTTCAACTGCTTT+TGG | + | chr2_3:1195237-1195256 | None:intergenic | 25.0% |
| ! | AAAGCAGTTGAAAAATAGAA+TGG | - | chr2_3:1195237-1195256 | Msa0269940:CDS | 25.0% |
| ! | CAATTAATTGGTAAAGAAAC+AGG | - | chr2_3:1195292-1195311 | Msa0269940:CDS | 25.0% |
| ! | GATGAATTGGAATTCATATA+TGG | - | chr2_3:1195522-1195541 | Msa0269940:CDS | 25.0% |
| ! | TGAATTGGAATTCATATATG+GGG | - | chr2_3:1195524-1195543 | Msa0269940:CDS | 25.0% |
| !! | TTTTTGCCATTAGATTCTAA+TGG | + | chr2_3:1195597-1195616 | None:intergenic | 25.0% |
| !! | GATGATAGTGAATTTGATAT+TGG | - | chr2_3:1195654-1195673 | Msa0269940:intron | 25.0% |
| ! | TCAACCAAAAAAGAAAAGAA+AGG | - | chr2_3:1195704-1195723 | Msa0269940:intron | 25.0% |
| !! | GAAACCTTTCTTTTCTTTTT+TGG | + | chr2_3:1195711-1195730 | None:intergenic | 25.0% |
| ! | TTCAATAATTTAACGCAATC+TGG | + | chr2_3:1195897-1195916 | None:intergenic | 25.0% |
| !!! | ACTCTTTTAAGGTTATTAGT+AGG | + | chr2_3:1196001-1196020 | None:intergenic | 25.0% |
| !! | TTTTAGGAATAAGAAATGGG+AGG | - | chr2_3:1195168-1195187 | Msa0269940:CDS | 30.0% |
| ACGACATGGAAACAATTAAT+TGG | - | chr2_3:1195280-1195299 | Msa0269940:CDS | 30.0% | |
| AATTGGTAAAGAAACAGGTT+TGG | - | chr2_3:1195297-1195316 | Msa0269940:CDS | 30.0% | |
| ATTGGTAAAGAAACAGGTTT+GGG | - | chr2_3:1195298-1195317 | Msa0269940:CDS | 30.0% | |
| AAAATTTCGCTATCAAGGTT+TGG | - | chr2_3:1195491-1195510 | Msa0269940:CDS | 30.0% | |
| ! | TTTGGAATTTCGTGATGAAT+TGG | - | chr2_3:1195509-1195528 | Msa0269940:CDS | 30.0% |
| ! | TCAGAGTCAATTATTTCTTG+TGG | + | chr2_3:1195636-1195655 | None:intergenic | 30.0% |
| AGAAAGGTTTCACCAAATAT+TGG | - | chr2_3:1195720-1195739 | Msa0269940:intron | 30.0% | |
| CTATGAGAAAAACATTTGAG+CGG | - | chr2_3:1195787-1195806 | Msa0269940:CDS | 30.0% | |
| AGGTCATAATGAAGTTGAAA+AGG | - | chr2_3:1195827-1195846 | Msa0269940:CDS | 30.0% | |
| !!! | AAGGATGATGGTTTTTTGAA+TGG | - | chr2_3:1195924-1195943 | Msa0269940:CDS | 30.0% |
| AATAACCTTAAAAGAGTCGA+AGG | - | chr2_3:1196004-1196023 | Msa0269940:CDS | 30.0% | |
| !! | TTTTAGGAATAAGAAATGGG+AGG | - | chr2_3:1195168-1195187 | Msa0269940:CDS | 30.0% |
| ACGACATGGAAACAATTAAT+TGG | - | chr2_3:1195280-1195299 | Msa0269940:CDS | 30.0% | |
| AATTGGTAAAGAAACAGGTT+TGG | - | chr2_3:1195297-1195316 | Msa0269940:CDS | 30.0% | |
| ATTGGTAAAGAAACAGGTTT+GGG | - | chr2_3:1195298-1195317 | Msa0269940:CDS | 30.0% | |
| AAAATTTCGCTATCAAGGTT+TGG | - | chr2_3:1195491-1195510 | Msa0269940:CDS | 30.0% | |
| ! | TTTGGAATTTCGTGATGAAT+TGG | - | chr2_3:1195509-1195528 | Msa0269940:CDS | 30.0% |
| ! | TCAGAGTCAATTATTTCTTG+TGG | + | chr2_3:1195636-1195655 | None:intergenic | 30.0% |
| AGAAAGGTTTCACCAAATAT+TGG | - | chr2_3:1195720-1195739 | Msa0269940:intron | 30.0% | |
| CTATGAGAAAAACATTTGAG+CGG | - | chr2_3:1195787-1195806 | Msa0269940:CDS | 30.0% | |
| AGGTCATAATGAAGTTGAAA+AGG | - | chr2_3:1195827-1195846 | Msa0269940:CDS | 30.0% | |
| !!! | AAGGATGATGGTTTTTTGAA+TGG | - | chr2_3:1195924-1195943 | Msa0269940:CDS | 30.0% |
| AATAACCTTAAAAGAGTCGA+AGG | - | chr2_3:1196004-1196023 | Msa0269940:CDS | 30.0% | |
| TTATTCCTAAAAGCAAGACC+GGG | + | chr2_3:1195160-1195179 | None:intergenic | 35.0% | |
| CTTATTCCTAAAAGCAAGAC+CGG | + | chr2_3:1195161-1195180 | None:intergenic | 35.0% | |
| !! | TGGATGCTTTGAGAAATGAT+TGG | - | chr2_3:1195257-1195276 | Msa0269940:CDS | 35.0% |
| ATATTGATGCTGATGCTTCA+TGG | - | chr2_3:1195341-1195360 | Msa0269940:CDS | 35.0% | |
| !! | TCTCTTGTTATTGGTTATGC+AGG | - | chr2_3:1195452-1195471 | Msa0269940:CDS | 35.0% |
| ! | TTGGTTGAGTATTTTCCAGA+GGG | + | chr2_3:1195692-1195711 | None:intergenic | 35.0% |
| ! | TTTGGTTGAGTATTTTCCAG+AGG | + | chr2_3:1195693-1195712 | None:intergenic | 35.0% |
| ! | GTCACTTTCTCTCCAATATT+TGG | + | chr2_3:1195735-1195754 | None:intergenic | 35.0% |
| TATTGGAGAGAAAGTGACAA+AGG | - | chr2_3:1195737-1195756 | Msa0269940:intron | 35.0% | |
| ATTGGAGAGAAAGTGACAAA+GGG | - | chr2_3:1195738-1195757 | Msa0269940:intron | 35.0% | |
| AGTTGAAAAGGCTCAAATTG+CGG | - | chr2_3:1195839-1195858 | Msa0269940:CDS | 35.0% | |
| ! | TTGAAAAGTGCAAAGGATGA+TGG | - | chr2_3:1195912-1195931 | Msa0269940:CDS | 35.0% |
| ! | ATCTTCCTTCGACTCTTTTA+AGG | + | chr2_3:1196012-1196031 | None:intergenic | 35.0% |
| AAAAGAGTCGAAGGAAGATT+TGG | - | chr2_3:1196013-1196032 | Msa0269940:CDS | 35.0% | |
| TTATTCCTAAAAGCAAGACC+GGG | + | chr2_3:1195160-1195179 | None:intergenic | 35.0% | |
| CTTATTCCTAAAAGCAAGAC+CGG | + | chr2_3:1195161-1195180 | None:intergenic | 35.0% | |
| !! | TGGATGCTTTGAGAAATGAT+TGG | - | chr2_3:1195257-1195276 | Msa0269940:CDS | 35.0% |
| ATATTGATGCTGATGCTTCA+TGG | - | chr2_3:1195341-1195360 | Msa0269940:CDS | 35.0% | |
| !! | TCTCTTGTTATTGGTTATGC+AGG | - | chr2_3:1195452-1195471 | Msa0269940:CDS | 35.0% |
| ! | TTGGTTGAGTATTTTCCAGA+GGG | + | chr2_3:1195692-1195711 | None:intergenic | 35.0% |
| ! | TTTGGTTGAGTATTTTCCAG+AGG | + | chr2_3:1195693-1195712 | None:intergenic | 35.0% |
| ! | GTCACTTTCTCTCCAATATT+TGG | + | chr2_3:1195735-1195754 | None:intergenic | 35.0% |
| TATTGGAGAGAAAGTGACAA+AGG | - | chr2_3:1195737-1195756 | Msa0269940:intron | 35.0% | |
| ATTGGAGAGAAAGTGACAAA+GGG | - | chr2_3:1195738-1195757 | Msa0269940:intron | 35.0% | |
| AGTTGAAAAGGCTCAAATTG+CGG | - | chr2_3:1195839-1195858 | Msa0269940:CDS | 35.0% | |
| ! | TTGAAAAGTGCAAAGGATGA+TGG | - | chr2_3:1195912-1195931 | Msa0269940:CDS | 35.0% |
| ! | ATCTTCCTTCGACTCTTTTA+AGG | + | chr2_3:1196012-1196031 | None:intergenic | 35.0% |
| AAAAGAGTCGAAGGAAGATT+TGG | - | chr2_3:1196013-1196032 | Msa0269940:CDS | 35.0% | |
| TGAGAAATGATTGGACGACA+TGG | - | chr2_3:1195266-1195285 | Msa0269940:CDS | 40.0% | |
| GTAAAGAAACAGGTTTGGGA+TGG | - | chr2_3:1195302-1195321 | Msa0269940:CDS | 40.0% | |
| GCATCAATATTTCCTACCTG+AGG | + | chr2_3:1195331-1195350 | None:intergenic | 40.0% | |
| ! | ATGGTGGGATGCTAAGATAA+GGG | - | chr2_3:1195360-1195379 | Msa0269940:CDS | 40.0% |
| ATTCATATATGGGGATGCAG+TGG | - | chr2_3:1195533-1195552 | Msa0269940:CDS | 40.0% | |
| ! | GGTGTGCCATTAGAATCTAA+TGG | - | chr2_3:1195588-1195607 | Msa0269940:CDS | 40.0% |
| ! | TATTTTCCAGAGGGCTAAAG+TGG | + | chr2_3:1195683-1195702 | None:intergenic | 40.0% |
| AGAGAAAGTGACAAAGGGAA+AGG | - | chr2_3:1195743-1195762 | Msa0269940:intron | 40.0% | |
| TGAGAAATGATTGGACGACA+TGG | - | chr2_3:1195266-1195285 | Msa0269940:CDS | 40.0% | |
| GTAAAGAAACAGGTTTGGGA+TGG | - | chr2_3:1195302-1195321 | Msa0269940:CDS | 40.0% | |
| GCATCAATATTTCCTACCTG+AGG | + | chr2_3:1195331-1195350 | None:intergenic | 40.0% | |
| ! | ATGGTGGGATGCTAAGATAA+GGG | - | chr2_3:1195360-1195379 | Msa0269940:CDS | 40.0% |
| ATTCATATATGGGGATGCAG+TGG | - | chr2_3:1195533-1195552 | Msa0269940:CDS | 40.0% | |
| ! | GGTGTGCCATTAGAATCTAA+TGG | - | chr2_3:1195588-1195607 | Msa0269940:CDS | 40.0% |
| ! | TATTTTCCAGAGGGCTAAAG+TGG | + | chr2_3:1195683-1195702 | None:intergenic | 40.0% |
| AGAGAAAGTGACAAAGGGAA+AGG | - | chr2_3:1195743-1195762 | Msa0269940:intron | 40.0% | |
| ATGGGTGAGATCCGTAAATG+TGG | - | chr2_3:1195130-1195149 | Msa0269940:CDS | 45.0% | |
| ATCCGTAAATGTGGAAAGCC+CGG | - | chr2_3:1195139-1195158 | Msa0269940:CDS | 45.0% | |
| TTGATGCTGATGCTTCATGG+TGG | - | chr2_3:1195344-1195363 | Msa0269940:CDS | 45.0% | |
| TGATGCTGATGCTTCATGGT+GGG | - | chr2_3:1195345-1195364 | Msa0269940:CDS | 45.0% | |
| ! | CATGGTGGGATGCTAAGATA+AGG | - | chr2_3:1195359-1195378 | Msa0269940:CDS | 45.0% |
| TGGCAACAAGTCAACACCAA+TGG | - | chr2_3:1195553-1195572 | Msa0269940:CDS | 45.0% | |
| AGTGACAAAGGGAAAGGCAA+AGG | - | chr2_3:1195749-1195768 | Msa0269940:CDS | 45.0% | |
| ACAAAGGGAAAGGCAAAGGT+TGG | - | chr2_3:1195753-1195772 | Msa0269940:CDS | 45.0% | |
| CAAAGGGAAAGGCAAAGGTT+GGG | - | chr2_3:1195754-1195773 | Msa0269940:CDS | 45.0% | |
| ! | CTGGAATAGAGTACTCTCCA+TGG | + | chr2_3:1195878-1195897 | None:intergenic | 45.0% |
| ATGGGTGAGATCCGTAAATG+TGG | - | chr2_3:1195130-1195149 | Msa0269940:CDS | 45.0% | |
| ATCCGTAAATGTGGAAAGCC+CGG | - | chr2_3:1195139-1195158 | Msa0269940:CDS | 45.0% | |
| TTGATGCTGATGCTTCATGG+TGG | - | chr2_3:1195344-1195363 | Msa0269940:CDS | 45.0% | |
| TGATGCTGATGCTTCATGGT+GGG | - | chr2_3:1195345-1195364 | Msa0269940:CDS | 45.0% | |
| ! | CATGGTGGGATGCTAAGATA+AGG | - | chr2_3:1195359-1195378 | Msa0269940:CDS | 45.0% |
| TGGCAACAAGTCAACACCAA+TGG | - | chr2_3:1195553-1195572 | Msa0269940:CDS | 45.0% | |
| AGTGACAAAGGGAAAGGCAA+AGG | - | chr2_3:1195749-1195768 | Msa0269940:CDS | 45.0% | |
| ACAAAGGGAAAGGCAAAGGT+TGG | - | chr2_3:1195753-1195772 | Msa0269940:CDS | 45.0% | |
| CAAAGGGAAAGGCAAAGGTT+GGG | - | chr2_3:1195754-1195773 | Msa0269940:CDS | 45.0% | |
| ! | CTGGAATAGAGTACTCTCCA+TGG | + | chr2_3:1195878-1195897 | None:intergenic | 45.0% |
| GACCGGGCTTTCCACATTTA+CGG | + | chr2_3:1195144-1195163 | None:intergenic | 50.0% | |
| !! | GAAAGCCCGGTCTTGCTTTT+AGG | - | chr2_3:1195152-1195171 | Msa0269940:CDS | 50.0% |
| ! | AGGTTTGGGATGGAATCCTC+AGG | - | chr2_3:1195312-1195331 | Msa0269940:CDS | 50.0% |
| TTGGGATGGAATCCTCAGGT+AGG | - | chr2_3:1195316-1195335 | Msa0269940:CDS | 50.0% | |
| ACACCAATGGACACCAGCTT+TGG | - | chr2_3:1195566-1195585 | Msa0269940:CDS | 50.0% | |
| CACCAATGGACACCAGCTTT+GGG | - | chr2_3:1195567-1195586 | Msa0269940:CDS | 50.0% | |
| TCTAATGGCACACCCAAAGC+TGG | + | chr2_3:1195582-1195601 | None:intergenic | 50.0% | |
| ! | CGGTTAGTTGAAGCAGCTGA+AGG | - | chr2_3:1195807-1195826 | Msa0269940:CDS | 50.0% |
| GTACTCTCCATGGACATGAG+AGG | + | chr2_3:1195868-1195887 | None:intergenic | 50.0% | |
| GACCGGGCTTTCCACATTTA+CGG | + | chr2_3:1195144-1195163 | None:intergenic | 50.0% | |
| !! | GAAAGCCCGGTCTTGCTTTT+AGG | - | chr2_3:1195152-1195171 | Msa0269940:CDS | 50.0% |
| ! | AGGTTTGGGATGGAATCCTC+AGG | - | chr2_3:1195312-1195331 | Msa0269940:CDS | 50.0% |
| TTGGGATGGAATCCTCAGGT+AGG | - | chr2_3:1195316-1195335 | Msa0269940:CDS | 50.0% | |
| ACACCAATGGACACCAGCTT+TGG | - | chr2_3:1195566-1195585 | Msa0269940:CDS | 50.0% | |
| CACCAATGGACACCAGCTTT+GGG | - | chr2_3:1195567-1195586 | Msa0269940:CDS | 50.0% | |
| TCTAATGGCACACCCAAAGC+TGG | + | chr2_3:1195582-1195601 | None:intergenic | 50.0% | |
| ! | CGGTTAGTTGAAGCAGCTGA+AGG | - | chr2_3:1195807-1195826 | Msa0269940:CDS | 50.0% |
| GTACTCTCCATGGACATGAG+AGG | + | chr2_3:1195868-1195887 | None:intergenic | 50.0% | |
| CACCCAAAGCTGGTGTCCAT+TGG | + | chr2_3:1195572-1195591 | None:intergenic | 55.0% | |
| TGGTGACCACTTTAGCCCTC+TGG | - | chr2_3:1195674-1195693 | Msa0269940:intron | 55.0% | |
| CTCTCCATGGACATGAGAGG+TGG | + | chr2_3:1195865-1195884 | None:intergenic | 55.0% | |
| CACCCAAAGCTGGTGTCCAT+TGG | + | chr2_3:1195572-1195591 | None:intergenic | 55.0% | |
| TGGTGACCACTTTAGCCCTC+TGG | - | chr2_3:1195674-1195693 | Msa0269940:intron | 55.0% | |
| CTCTCCATGGACATGAGAGG+TGG | + | chr2_3:1195865-1195884 | None:intergenic | 55.0% | |
| GCGGCCACCTCTCATGTCCA+TGG | - | chr2_3:1195858-1195877 | Msa0269940:CDS | 65.0% | |
| GCGGCCACCTCTCATGTCCA+TGG | - | chr2_3:1195858-1195877 | Msa0269940:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 1195040 | 1196085 | 1195040 | ID=Msa0269940;Name=Msa0269940 |
| chr2_3 | mRNA | 1195040 | 1196085 | 1195040 | ID=Msa0269940-mRNA-1;Parent=Msa0269940;Name=Msa0269940-mRNA-1;_AED=0.04;_eAED=0.04;_QI=12|1|0.5|1|1|1|2|0|313 |
| chr2_3 | exon | 1195040 | 1195651 | 1195040 | ID=Msa0269940-mRNA-1:exon:525;Parent=Msa0269940-mRNA-1 |
| chr2_3 | exon | 1195744 | 1196085 | 1195744 | ID=Msa0269940-mRNA-1:exon:524;Parent=Msa0269940-mRNA-1 |
| chr2_3 | five_prime_UTR | 1196074 | 1196085 | 1196074 | ID=Msa0269940-mRNA-1:five_prime_utr;Parent=Msa0269940-mRNA-1 |
| chr2_3 | CDS | 1195744 | 1196073 | 1195744 | ID=Msa0269940-mRNA-1:cds;Parent=Msa0269940-mRNA-1 |
| chr2_3 | CDS | 1195040 | 1195651 | 1195040 | ID=Msa0269940-mRNA-1:cds;Parent=Msa0269940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
