Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475870 | XP_013468628.2 | 95.161 | 310 | 15 | 0 | 4 | 313 | 10 | 319 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475870 | sp|Q9FFJ8|LIMYB_ARATH | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.66e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475870 | A0A072VX43 | 94.194 | 310 | 18 | 0 | 4 | 313 | 10 | 319 | 0.0 | 608 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0427350 | Msa0475870 | 0.843824 | 1.104866e-58 | -8.615850e-47 |
| Msa0475870 | Msa1062220 | 0.821236 | 4.495718e-53 | -8.615850e-47 |
| Msa0475870 | Msa1155910 | 0.817605 | 3.023359e-52 | -8.615850e-47 |
| Msa0269940 | Msa0475870 | 0.897149 | 1.859363e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475870 | MtrunA17_Chr8g0362511 | 89.389 | 311 | 33 | 0 | 3 | 313 | 61 | 371 | 0.0 | 580 |
| Msa0475870 | MtrunA17_Chr5g0402821 | 53.674 | 313 | 122 | 6 | 10 | 305 | 16 | 322 | 5.32e-109 | 320 |
| Msa0475870 | MtrunA17_Chr3g0098031 | 81.928 | 83 | 15 | 0 | 109 | 191 | 1 | 83 | 4.65e-45 | 148 |
| Msa0475870 | MtrunA17_Chr1g0172741 | 32.114 | 246 | 149 | 5 | 2 | 233 | 14 | 255 | 2.51e-35 | 130 |
| Msa0475870 | MtrunA17_Chr2g0285481 | 32.114 | 246 | 149 | 5 | 2 | 233 | 14 | 255 | 2.73e-35 | 130 |
| Msa0475870 | MtrunA17_Chr8g0334551 | 34.463 | 177 | 98 | 2 | 10 | 186 | 22 | 180 | 4.00e-29 | 114 |
| Msa0475870 | MtrunA17_Chr2g0321391 | 31.844 | 179 | 105 | 4 | 68 | 233 | 3 | 177 | 9.39e-22 | 92.0 |
| Msa0475870 | MtrunA17_Chr3g0113081 | 29.834 | 181 | 121 | 4 | 1 | 179 | 374 | 550 | 2.84e-19 | 88.2 |
| Msa0475870 | MtrunA17_Chr3g0113081 | 29.677 | 155 | 105 | 3 | 10 | 164 | 185 | 335 | 3.60e-18 | 85.1 |
| Msa0475870 | MtrunA17_Chr3g0113081 | 30.645 | 124 | 84 | 2 | 10 | 133 | 8 | 129 | 3.18e-15 | 76.3 |
| Msa0475870 | MtrunA17_Chr5g0422691 | 40.217 | 92 | 54 | 1 | 2 | 92 | 14 | 105 | 3.01e-17 | 76.3 |
| Msa0475870 | MtrunA17_Chr7g0254281 | 42.466 | 73 | 42 | 0 | 233 | 305 | 15 | 87 | 1.85e-16 | 73.6 |
| Msa0475870 | MtrunA17_Chr1g0176881 | 27.500 | 120 | 86 | 1 | 16 | 135 | 198 | 316 | 4.29e-11 | 63.5 |
| Msa0475870 | MtrunA17_Chr5g0405761 | 23.158 | 285 | 198 | 7 | 10 | 294 | 50 | 313 | 6.99e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475870 | AT5G05800.1 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.70e-14 | 73.6 |
| Msa0475870 | AT5G05800.5 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.70e-14 | 73.6 |
| Msa0475870 | AT5G05800.3 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.70e-14 | 73.6 |
| Msa0475870 | AT5G05800.2 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.70e-14 | 73.6 |
| Msa0475870 | AT5G05800.4 | 29.927 | 137 | 94 | 2 | 1 | 137 | 158 | 292 | 2.70e-14 | 73.6 |
| Msa0475870 | AT3G11310.1 | 27.419 | 186 | 118 | 4 | 10 | 180 | 173 | 356 | 8.98e-11 | 63.2 |
Find 62 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCACTTTCTCTCCAATATT+TGG | 0.180945 | 3_3:-79567662 | None:intergenic |
| TTCAATAATTTAACGCAATA+TGG | 0.194079 | 3_3:-79567824 | None:intergenic |
| TAAGAAACCATCTAATATTT+AGG | 0.205786 | 3_3:+79567994 | Msa0475870:CDS |
| ACATAAGTCAAGTAAAATTT+TGG | 0.222616 | 3_3:-79567037 | None:intergenic |
| ACGACATGGAAACAATTAAT+TGG | 0.237993 | 3_3:+79567210 | Msa0475870:CDS |
| GATGAATTGGAATTCATATA+TGG | 0.262668 | 3_3:+79567452 | Msa0475870:CDS |
| AGAAAGGTTTCACCAAATAT+TGG | 0.287033 | 3_3:+79567650 | Msa0475870:CDS |
| TTTGGAATTTCGTGATGAAT+TGG | 0.307078 | 3_3:+79567439 | Msa0475870:CDS |
| GACCGGGCTTTCCACATTTA+CGG | 0.308674 | 3_3:-79567071 | None:intergenic |
| ATCTTAACCTAAATATTAGA+TGG | 0.348450 | 3_3:-79568001 | None:intergenic |
| AAAAGAGTCGAAGGAAGATT+TGG | 0.364686 | 3_3:+79567943 | Msa0475870:CDS |
| CAATTAATTGGTAAAGAAAC+AGG | 0.372346 | 3_3:+79567222 | Msa0475870:CDS |
| ATTGGTAAAGAAACAGGTTT+GGG | 0.383062 | 3_3:+79567228 | Msa0475870:CDS |
| AAAATTTCGCTATCAAGGTT+TGG | 0.385837 | 3_3:+79567421 | Msa0475870:CDS |
| ACACCAATGGACACCAGCTT+TGG | 0.388131 | 3_3:+79567496 | Msa0475870:CDS |
| GATGATAGTGAATTTGATAT+TGG | 0.393251 | 3_3:+79567584 | Msa0475870:CDS |
| TATTTAAAATTTCGCTATCA+AGG | 0.406698 | 3_3:+79567416 | Msa0475870:CDS |
| AATTGGTAAAGAAACAGGTT+TGG | 0.414579 | 3_3:+79567227 | Msa0475870:CDS |
| TGGATACTTTGAGAAATGAT+TGG | 0.416953 | 3_3:+79567187 | Msa0475870:CDS |
| CGAAGGAAGATTTGGTAGAG+TGG | 0.418271 | 3_3:+79567951 | Msa0475870:CDS |
| CACCAATGGACACCAGCTTT+GGG | 0.429567 | 3_3:+79567497 | Msa0475870:CDS |
| TTGAAAAGTGCAAAGGATGA+TGG | 0.438052 | 3_3:+79567842 | Msa0475870:CDS |
| ATTAAGGTATATTGCAGCTA+TGG | 0.438851 | 3_3:+79566963 | None:intergenic |
| ATGAATTGGAATTCATATAT+GGG | 0.451875 | 3_3:+79567453 | Msa0475870:CDS |
| TGGTGACCACTTTAGCCCTC+TGG | 0.472733 | 3_3:+79567604 | Msa0475870:CDS |
| CTTATTCCTAAAAGCAAGAC+CGG | 0.476233 | 3_3:-79567088 | None:intergenic |
| AGTGACAAAGGGAAAGGAAA+AGG | 0.486448 | 3_3:+79567679 | Msa0475870:CDS |
| CATGGTGGGATGCTAAGATA+AGG | 0.494064 | 3_3:+79567289 | Msa0475870:CDS |
| AGGTCATAATGAAGTTGAAA+AGG | 0.499240 | 3_3:+79567757 | Msa0475870:CDS |
| ATATTGATGCTGATGCTTCA+TGG | 0.500130 | 3_3:+79567271 | Msa0475870:CDS |
| ATCCGTAAATGTGGAAAGCC+CGG | 0.502131 | 3_3:+79567069 | Msa0475870:CDS |
| CACCCAAAGCTGGTGTCCAT+TGG | 0.517260 | 3_3:-79567499 | None:intergenic |
| TCAGAGTCAATTATTTCTTG+TGG | 0.529496 | 3_3:-79567563 | None:intergenic |
| GGTGTGCCATTAGAATCTAA+TGG | 0.531870 | 3_3:+79567518 | Msa0475870:CDS |
| ACAAAGGGAAAGGAAAAGGT+TGG | 0.537689 | 3_3:+79567683 | Msa0475870:CDS |
| GTAAAGAAACAGGTTTGGGA+TGG | 0.538168 | 3_3:+79567232 | Msa0475870:CDS |
| ATTGGAGAGAAAGTGACAAA+GGG | 0.539994 | 3_3:+79567668 | Msa0475870:CDS |
| CAAAGGGAAAGGAAAAGGTT+GGG | 0.547590 | 3_3:+79567684 | Msa0475870:CDS |
| TCTAATGGCACACCCAAAGC+TGG | 0.551818 | 3_3:-79567509 | None:intergenic |
| AAAATTCAGTAAAAGCAACT+TGG | 0.557465 | 3_3:+79566998 | Msa0475870:CDS |
| TAAATTATTGAAAAGTGCAA+AGG | 0.562498 | 3_3:+79567835 | Msa0475870:CDS |
| ATGGTGGGATGCTAAGATAA+GGG | 0.562867 | 3_3:+79567290 | Msa0475870:CDS |
| AGAGAAAGTGACAAAGGGAA+AGG | 0.567438 | 3_3:+79567673 | Msa0475870:CDS |
| GCGGCCACCTCTCATGTCCA+TGG | 0.573543 | 3_3:+79567788 | Msa0475870:CDS |
| AATAACCTTAAAAGAGTCGA+AGG | 0.582919 | 3_3:+79567934 | Msa0475870:CDS |
| AGGTTTGGGATGGAATCCTC+AGG | 0.587284 | 3_3:+79567242 | Msa0475870:CDS |
| TATTGGAGAGAAAGTGACAA+AGG | 0.587956 | 3_3:+79567667 | Msa0475870:CDS |
| TGAGAAATGATTGGACGACA+TGG | 0.587998 | 3_3:+79567196 | Msa0475870:CDS |
| ATGGAATAGAGTACTCTCCA+TGG | 0.598430 | 3_3:-79567805 | None:intergenic |
| CGGTTAGTTGAAGCAGCTGA+AGG | 0.604811 | 3_3:+79567737 | Msa0475870:CDS |
| TGGCAACAAGTCAACACCAA+TGG | 0.615706 | 3_3:+79567483 | Msa0475870:CDS |
| GCATCAATATTTCCTACCTG+AGG | 0.624235 | 3_3:-79567258 | None:intergenic |
| AGTTGAAAAGGCTCAAATTG+CGG | 0.627899 | 3_3:+79567769 | Msa0475870:CDS |
| ATTCATATATGGGGATGCAG+TGG | 0.646143 | 3_3:+79567463 | Msa0475870:CDS |
| CTCTCCATGGACATGAGAGG+TGG | 0.646702 | 3_3:-79567792 | None:intergenic |
| GTACTCTCCATGGACATGAG+AGG | 0.646753 | 3_3:-79567795 | None:intergenic |
| TGATGCTGATGCTTCATGGT+GGG | 0.646760 | 3_3:+79567275 | Msa0475870:CDS |
| TTATTCCTAAAAGCAAGACC+GGG | 0.648563 | 3_3:-79567087 | None:intergenic |
| ATGGGTGAGATCCGTAAATG+TGG | 0.672000 | 3_3:+79567060 | Msa0475870:CDS |
| TGAATTGGAATTCATATATG+GGG | 0.675974 | 3_3:+79567454 | Msa0475870:CDS |
| TTGGGATGGAATCCTCAGGT+AGG | 0.678607 | 3_3:+79567246 | Msa0475870:CDS |
| TTGATGCTGATGCTTCATGG+TGG | 0.719368 | 3_3:+79567274 | Msa0475870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACAAGAGAAAATATTT+AGG | - | chr3_3:79567374-79567393 | None:intergenic | 15.0% |
| !!! | TAAATATTTTCTCTTGTTAT+TGG | + | chr3_3:79567373-79567392 | Msa0475870:intron | 15.0% |
| !! | AATAACAAGAGAAAATATTT+AGG | - | chr3_3:79567374-79567393 | None:intergenic | 15.0% |
| !!! | TAAATATTTTCTCTTGTTAT+TGG | + | chr3_3:79567373-79567392 | Msa0475870:intron | 15.0% |
| !!! | ACATAAGTCAAGTAAAATTT+TGG | - | chr3_3:79567040-79567059 | None:intergenic | 20.0% |
| !!! | AATTTTACTTGACTTATGTA+TGG | + | chr3_3:79567041-79567060 | Msa0475870:CDS | 20.0% |
| !!! | ATTTTACTTGACTTATGTAT+GGG | + | chr3_3:79567042-79567061 | Msa0475870:CDS | 20.0% |
| !!! | TATTTAAAATTTCGCTATCA+AGG | + | chr3_3:79567416-79567435 | Msa0475870:CDS | 20.0% |
| !! | ATGAATTGGAATTCATATAT+GGG | + | chr3_3:79567453-79567472 | Msa0475870:CDS | 20.0% |
| !! | TTCAATAATTTAACGCAATA+TGG | - | chr3_3:79567827-79567846 | None:intergenic | 20.0% |
| !!! | TAAATTATTGAAAAGTGCAA+AGG | + | chr3_3:79567835-79567854 | Msa0475870:CDS | 20.0% |
| !!! | ACATAAGTCAAGTAAAATTT+TGG | - | chr3_3:79567040-79567059 | None:intergenic | 20.0% |
| !!! | AATTTTACTTGACTTATGTA+TGG | + | chr3_3:79567041-79567060 | Msa0475870:CDS | 20.0% |
| !!! | ATTTTACTTGACTTATGTAT+GGG | + | chr3_3:79567042-79567061 | Msa0475870:CDS | 20.0% |
| !!! | TATTTAAAATTTCGCTATCA+AGG | + | chr3_3:79567416-79567435 | Msa0475870:CDS | 20.0% |
| !! | ATGAATTGGAATTCATATAT+GGG | + | chr3_3:79567453-79567472 | Msa0475870:CDS | 20.0% |
| !! | TTCAATAATTTAACGCAATA+TGG | - | chr3_3:79567827-79567846 | None:intergenic | 20.0% |
| !!! | TAAATTATTGAAAAGTGCAA+AGG | + | chr3_3:79567835-79567854 | Msa0475870:CDS | 20.0% |
| ! | AAAATTCAGTAAAAGCAACT+TGG | + | chr3_3:79566998-79567017 | Msa0475870:CDS | 25.0% |
| !!! | AGTAAAATTTTGGTATCTGA+TGG | - | chr3_3:79567030-79567049 | None:intergenic | 25.0% |
| !!! | TTGCTTTTAGGAATAAGAAA+TGG | + | chr3_3:79567094-79567113 | Msa0475870:CDS | 25.0% |
| !!! | TGCTTTTAGGAATAAGAAAT+GGG | + | chr3_3:79567095-79567114 | Msa0475870:CDS | 25.0% |
| !!! | TTCTATTTTTCAACTGCTTT+TGG | - | chr3_3:79567167-79567186 | None:intergenic | 25.0% |
| ! | AAAGCAGTTGAAAAATAGAA+TGG | + | chr3_3:79567167-79567186 | Msa0475870:CDS | 25.0% |
| ! | CAATTAATTGGTAAAGAAAC+AGG | + | chr3_3:79567222-79567241 | Msa0475870:CDS | 25.0% |
| ! | GATGAATTGGAATTCATATA+TGG | + | chr3_3:79567452-79567471 | Msa0475870:CDS | 25.0% |
| ! | TGAATTGGAATTCATATATG+GGG | + | chr3_3:79567454-79567473 | Msa0475870:CDS | 25.0% |
| !! | TTTTTGCCATTAGATTCTAA+TGG | - | chr3_3:79567527-79567546 | None:intergenic | 25.0% |
| !! | GATGATAGTGAATTTGATAT+TGG | + | chr3_3:79567584-79567603 | Msa0475870:CDS | 25.0% |
| ! | TCAACCAAAAAAGAAAAGAA+AGG | + | chr3_3:79567634-79567653 | Msa0475870:CDS | 25.0% |
| !! | GAAACCTTTCTTTTCTTTTT+TGG | - | chr3_3:79567641-79567660 | None:intergenic | 25.0% |
| !!! | ACTCTTTTAAGGTTATTAGT+AGG | - | chr3_3:79567931-79567950 | None:intergenic | 25.0% |
| ! | AAAATTCAGTAAAAGCAACT+TGG | + | chr3_3:79566998-79567017 | Msa0475870:CDS | 25.0% |
| !!! | AGTAAAATTTTGGTATCTGA+TGG | - | chr3_3:79567030-79567049 | None:intergenic | 25.0% |
| !!! | TTGCTTTTAGGAATAAGAAA+TGG | + | chr3_3:79567094-79567113 | Msa0475870:CDS | 25.0% |
| !!! | TGCTTTTAGGAATAAGAAAT+GGG | + | chr3_3:79567095-79567114 | Msa0475870:CDS | 25.0% |
| !!! | TTCTATTTTTCAACTGCTTT+TGG | - | chr3_3:79567167-79567186 | None:intergenic | 25.0% |
| ! | AAAGCAGTTGAAAAATAGAA+TGG | + | chr3_3:79567167-79567186 | Msa0475870:CDS | 25.0% |
| ! | CAATTAATTGGTAAAGAAAC+AGG | + | chr3_3:79567222-79567241 | Msa0475870:CDS | 25.0% |
| ! | GATGAATTGGAATTCATATA+TGG | + | chr3_3:79567452-79567471 | Msa0475870:CDS | 25.0% |
| ! | TGAATTGGAATTCATATATG+GGG | + | chr3_3:79567454-79567473 | Msa0475870:CDS | 25.0% |
| !! | TTTTTGCCATTAGATTCTAA+TGG | - | chr3_3:79567527-79567546 | None:intergenic | 25.0% |
| !! | GATGATAGTGAATTTGATAT+TGG | + | chr3_3:79567584-79567603 | Msa0475870:CDS | 25.0% |
| ! | TCAACCAAAAAAGAAAAGAA+AGG | + | chr3_3:79567634-79567653 | Msa0475870:CDS | 25.0% |
| !! | GAAACCTTTCTTTTCTTTTT+TGG | - | chr3_3:79567641-79567660 | None:intergenic | 25.0% |
| !!! | ACTCTTTTAAGGTTATTAGT+AGG | - | chr3_3:79567931-79567950 | None:intergenic | 25.0% |
| !! | TTTTAGGAATAAGAAATGGG+AGG | + | chr3_3:79567098-79567117 | Msa0475870:CDS | 30.0% |
| ! | TGGATACTTTGAGAAATGAT+TGG | + | chr3_3:79567187-79567206 | Msa0475870:CDS | 30.0% |
| ACGACATGGAAACAATTAAT+TGG | + | chr3_3:79567210-79567229 | Msa0475870:CDS | 30.0% | |
| AATTGGTAAAGAAACAGGTT+TGG | + | chr3_3:79567227-79567246 | Msa0475870:CDS | 30.0% | |
| ATTGGTAAAGAAACAGGTTT+GGG | + | chr3_3:79567228-79567247 | Msa0475870:CDS | 30.0% | |
| AAAATTTCGCTATCAAGGTT+TGG | + | chr3_3:79567421-79567440 | Msa0475870:CDS | 30.0% | |
| ! | TTTGGAATTTCGTGATGAAT+TGG | + | chr3_3:79567439-79567458 | Msa0475870:CDS | 30.0% |
| ! | TCAGAGTCAATTATTTCTTG+TGG | - | chr3_3:79567566-79567585 | None:intergenic | 30.0% |
| AGAAAGGTTTCACCAAATAT+TGG | + | chr3_3:79567650-79567669 | Msa0475870:CDS | 30.0% | |
| CTATGAGAAAAACATTTGAG+CGG | + | chr3_3:79567717-79567736 | Msa0475870:CDS | 30.0% | |
| AGGTCATAATGAAGTTGAAA+AGG | + | chr3_3:79567757-79567776 | Msa0475870:CDS | 30.0% | |
| !!! | AAGGATGATGGTTTTTTGAA+TGG | + | chr3_3:79567854-79567873 | Msa0475870:CDS | 30.0% |
| AATAACCTTAAAAGAGTCGA+AGG | + | chr3_3:79567934-79567953 | Msa0475870:CDS | 30.0% | |
| !! | TTTTAGGAATAAGAAATGGG+AGG | + | chr3_3:79567098-79567117 | Msa0475870:CDS | 30.0% |
| ! | TGGATACTTTGAGAAATGAT+TGG | + | chr3_3:79567187-79567206 | Msa0475870:CDS | 30.0% |
| ACGACATGGAAACAATTAAT+TGG | + | chr3_3:79567210-79567229 | Msa0475870:CDS | 30.0% | |
| AATTGGTAAAGAAACAGGTT+TGG | + | chr3_3:79567227-79567246 | Msa0475870:CDS | 30.0% | |
| ATTGGTAAAGAAACAGGTTT+GGG | + | chr3_3:79567228-79567247 | Msa0475870:CDS | 30.0% | |
| AAAATTTCGCTATCAAGGTT+TGG | + | chr3_3:79567421-79567440 | Msa0475870:CDS | 30.0% | |
| ! | TTTGGAATTTCGTGATGAAT+TGG | + | chr3_3:79567439-79567458 | Msa0475870:CDS | 30.0% |
| ! | TCAGAGTCAATTATTTCTTG+TGG | - | chr3_3:79567566-79567585 | None:intergenic | 30.0% |
| AGAAAGGTTTCACCAAATAT+TGG | + | chr3_3:79567650-79567669 | Msa0475870:CDS | 30.0% | |
| CTATGAGAAAAACATTTGAG+CGG | + | chr3_3:79567717-79567736 | Msa0475870:CDS | 30.0% | |
| AGGTCATAATGAAGTTGAAA+AGG | + | chr3_3:79567757-79567776 | Msa0475870:CDS | 30.0% | |
| !!! | AAGGATGATGGTTTTTTGAA+TGG | + | chr3_3:79567854-79567873 | Msa0475870:CDS | 30.0% |
| AATAACCTTAAAAGAGTCGA+AGG | + | chr3_3:79567934-79567953 | Msa0475870:CDS | 30.0% | |
| TTATTCCTAAAAGCAAGACC+GGG | - | chr3_3:79567090-79567109 | None:intergenic | 35.0% | |
| CTTATTCCTAAAAGCAAGAC+CGG | - | chr3_3:79567091-79567110 | None:intergenic | 35.0% | |
| ATATTGATGCTGATGCTTCA+TGG | + | chr3_3:79567271-79567290 | Msa0475870:CDS | 35.0% | |
| !! | TCTCTTGTTATTGGTTATGC+AGG | + | chr3_3:79567382-79567401 | Msa0475870:intron | 35.0% |
| ! | TTGGTTGAGTATTTTCCAGA+GGG | - | chr3_3:79567622-79567641 | None:intergenic | 35.0% |
| ! | TTTGGTTGAGTATTTTCCAG+AGG | - | chr3_3:79567623-79567642 | None:intergenic | 35.0% |
| ! | GTCACTTTCTCTCCAATATT+TGG | - | chr3_3:79567665-79567684 | None:intergenic | 35.0% |
| TATTGGAGAGAAAGTGACAA+AGG | + | chr3_3:79567667-79567686 | Msa0475870:CDS | 35.0% | |
| ATTGGAGAGAAAGTGACAAA+GGG | + | chr3_3:79567668-79567687 | Msa0475870:CDS | 35.0% | |
| AGTTGAAAAGGCTCAAATTG+CGG | + | chr3_3:79567769-79567788 | Msa0475870:CDS | 35.0% | |
| ! | TTGAAAAGTGCAAAGGATGA+TGG | + | chr3_3:79567842-79567861 | Msa0475870:CDS | 35.0% |
| ! | ATCTTCCTTCGACTCTTTTA+AGG | - | chr3_3:79567942-79567961 | None:intergenic | 35.0% |
| AAAAGAGTCGAAGGAAGATT+TGG | + | chr3_3:79567943-79567962 | Msa0475870:CDS | 35.0% | |
| TTATTCCTAAAAGCAAGACC+GGG | - | chr3_3:79567090-79567109 | None:intergenic | 35.0% | |
| CTTATTCCTAAAAGCAAGAC+CGG | - | chr3_3:79567091-79567110 | None:intergenic | 35.0% | |
| ATATTGATGCTGATGCTTCA+TGG | + | chr3_3:79567271-79567290 | Msa0475870:CDS | 35.0% | |
| !! | TCTCTTGTTATTGGTTATGC+AGG | + | chr3_3:79567382-79567401 | Msa0475870:intron | 35.0% |
| ! | TTGGTTGAGTATTTTCCAGA+GGG | - | chr3_3:79567622-79567641 | None:intergenic | 35.0% |
| ! | TTTGGTTGAGTATTTTCCAG+AGG | - | chr3_3:79567623-79567642 | None:intergenic | 35.0% |
| ! | GTCACTTTCTCTCCAATATT+TGG | - | chr3_3:79567665-79567684 | None:intergenic | 35.0% |
| TATTGGAGAGAAAGTGACAA+AGG | + | chr3_3:79567667-79567686 | Msa0475870:CDS | 35.0% | |
| ATTGGAGAGAAAGTGACAAA+GGG | + | chr3_3:79567668-79567687 | Msa0475870:CDS | 35.0% | |
| AGTTGAAAAGGCTCAAATTG+CGG | + | chr3_3:79567769-79567788 | Msa0475870:CDS | 35.0% | |
| ! | TTGAAAAGTGCAAAGGATGA+TGG | + | chr3_3:79567842-79567861 | Msa0475870:CDS | 35.0% |
| ! | ATCTTCCTTCGACTCTTTTA+AGG | - | chr3_3:79567942-79567961 | None:intergenic | 35.0% |
| AAAAGAGTCGAAGGAAGATT+TGG | + | chr3_3:79567943-79567962 | Msa0475870:CDS | 35.0% | |
| TGAGAAATGATTGGACGACA+TGG | + | chr3_3:79567196-79567215 | Msa0475870:CDS | 40.0% | |
| GTAAAGAAACAGGTTTGGGA+TGG | + | chr3_3:79567232-79567251 | Msa0475870:CDS | 40.0% | |
| GCATCAATATTTCCTACCTG+AGG | - | chr3_3:79567261-79567280 | None:intergenic | 40.0% | |
| ! | ATGGTGGGATGCTAAGATAA+GGG | + | chr3_3:79567290-79567309 | Msa0475870:CDS | 40.0% |
| ATTCATATATGGGGATGCAG+TGG | + | chr3_3:79567463-79567482 | Msa0475870:CDS | 40.0% | |
| ! | GGTGTGCCATTAGAATCTAA+TGG | + | chr3_3:79567518-79567537 | Msa0475870:CDS | 40.0% |
| ! | TATTTTCCAGAGGGCTAAAG+TGG | - | chr3_3:79567613-79567632 | None:intergenic | 40.0% |
| AGAGAAAGTGACAAAGGGAA+AGG | + | chr3_3:79567673-79567692 | Msa0475870:CDS | 40.0% | |
| AGTGACAAAGGGAAAGGAAA+AGG | + | chr3_3:79567679-79567698 | Msa0475870:CDS | 40.0% | |
| ACAAAGGGAAAGGAAAAGGT+TGG | + | chr3_3:79567683-79567702 | Msa0475870:CDS | 40.0% | |
| CAAAGGGAAAGGAAAAGGTT+GGG | + | chr3_3:79567684-79567703 | Msa0475870:CDS | 40.0% | |
| ! | ATGGAATAGAGTACTCTCCA+TGG | - | chr3_3:79567808-79567827 | None:intergenic | 40.0% |
| TGAGAAATGATTGGACGACA+TGG | + | chr3_3:79567196-79567215 | Msa0475870:CDS | 40.0% | |
| GTAAAGAAACAGGTTTGGGA+TGG | + | chr3_3:79567232-79567251 | Msa0475870:CDS | 40.0% | |
| GCATCAATATTTCCTACCTG+AGG | - | chr3_3:79567261-79567280 | None:intergenic | 40.0% | |
| ! | ATGGTGGGATGCTAAGATAA+GGG | + | chr3_3:79567290-79567309 | Msa0475870:CDS | 40.0% |
| ATTCATATATGGGGATGCAG+TGG | + | chr3_3:79567463-79567482 | Msa0475870:CDS | 40.0% | |
| ! | GGTGTGCCATTAGAATCTAA+TGG | + | chr3_3:79567518-79567537 | Msa0475870:CDS | 40.0% |
| ! | TATTTTCCAGAGGGCTAAAG+TGG | - | chr3_3:79567613-79567632 | None:intergenic | 40.0% |
| AGAGAAAGTGACAAAGGGAA+AGG | + | chr3_3:79567673-79567692 | Msa0475870:CDS | 40.0% | |
| AGTGACAAAGGGAAAGGAAA+AGG | + | chr3_3:79567679-79567698 | Msa0475870:CDS | 40.0% | |
| ACAAAGGGAAAGGAAAAGGT+TGG | + | chr3_3:79567683-79567702 | Msa0475870:CDS | 40.0% | |
| CAAAGGGAAAGGAAAAGGTT+GGG | + | chr3_3:79567684-79567703 | Msa0475870:CDS | 40.0% | |
| ! | ATGGAATAGAGTACTCTCCA+TGG | - | chr3_3:79567808-79567827 | None:intergenic | 40.0% |
| ATGGGTGAGATCCGTAAATG+TGG | + | chr3_3:79567060-79567079 | Msa0475870:CDS | 45.0% | |
| ATCCGTAAATGTGGAAAGCC+CGG | + | chr3_3:79567069-79567088 | Msa0475870:CDS | 45.0% | |
| TTGATGCTGATGCTTCATGG+TGG | + | chr3_3:79567274-79567293 | Msa0475870:CDS | 45.0% | |
| TGATGCTGATGCTTCATGGT+GGG | + | chr3_3:79567275-79567294 | Msa0475870:CDS | 45.0% | |
| ! | CATGGTGGGATGCTAAGATA+AGG | + | chr3_3:79567289-79567308 | Msa0475870:CDS | 45.0% |
| TGGCAACAAGTCAACACCAA+TGG | + | chr3_3:79567483-79567502 | Msa0475870:CDS | 45.0% | |
| ! | CGAAGGAAGATTTGGTAGAG+TGG | + | chr3_3:79567951-79567970 | Msa0475870:CDS | 45.0% |
| ATGGGTGAGATCCGTAAATG+TGG | + | chr3_3:79567060-79567079 | Msa0475870:CDS | 45.0% | |
| ATCCGTAAATGTGGAAAGCC+CGG | + | chr3_3:79567069-79567088 | Msa0475870:CDS | 45.0% | |
| TTGATGCTGATGCTTCATGG+TGG | + | chr3_3:79567274-79567293 | Msa0475870:CDS | 45.0% | |
| TGATGCTGATGCTTCATGGT+GGG | + | chr3_3:79567275-79567294 | Msa0475870:CDS | 45.0% | |
| ! | CATGGTGGGATGCTAAGATA+AGG | + | chr3_3:79567289-79567308 | Msa0475870:CDS | 45.0% |
| TGGCAACAAGTCAACACCAA+TGG | + | chr3_3:79567483-79567502 | Msa0475870:CDS | 45.0% | |
| ! | CGAAGGAAGATTTGGTAGAG+TGG | + | chr3_3:79567951-79567970 | Msa0475870:CDS | 45.0% |
| GACCGGGCTTTCCACATTTA+CGG | - | chr3_3:79567074-79567093 | None:intergenic | 50.0% | |
| !! | GAAAGCCCGGTCTTGCTTTT+AGG | + | chr3_3:79567082-79567101 | Msa0475870:CDS | 50.0% |
| ! | AGGTTTGGGATGGAATCCTC+AGG | + | chr3_3:79567242-79567261 | Msa0475870:CDS | 50.0% |
| TTGGGATGGAATCCTCAGGT+AGG | + | chr3_3:79567246-79567265 | Msa0475870:CDS | 50.0% | |
| ACACCAATGGACACCAGCTT+TGG | + | chr3_3:79567496-79567515 | Msa0475870:CDS | 50.0% | |
| CACCAATGGACACCAGCTTT+GGG | + | chr3_3:79567497-79567516 | Msa0475870:CDS | 50.0% | |
| TCTAATGGCACACCCAAAGC+TGG | - | chr3_3:79567512-79567531 | None:intergenic | 50.0% | |
| ! | CGGTTAGTTGAAGCAGCTGA+AGG | + | chr3_3:79567737-79567756 | Msa0475870:CDS | 50.0% |
| GTACTCTCCATGGACATGAG+AGG | - | chr3_3:79567798-79567817 | None:intergenic | 50.0% | |
| GACCGGGCTTTCCACATTTA+CGG | - | chr3_3:79567074-79567093 | None:intergenic | 50.0% | |
| !! | GAAAGCCCGGTCTTGCTTTT+AGG | + | chr3_3:79567082-79567101 | Msa0475870:CDS | 50.0% |
| ! | AGGTTTGGGATGGAATCCTC+AGG | + | chr3_3:79567242-79567261 | Msa0475870:CDS | 50.0% |
| TTGGGATGGAATCCTCAGGT+AGG | + | chr3_3:79567246-79567265 | Msa0475870:CDS | 50.0% | |
| ACACCAATGGACACCAGCTT+TGG | + | chr3_3:79567496-79567515 | Msa0475870:CDS | 50.0% | |
| CACCAATGGACACCAGCTTT+GGG | + | chr3_3:79567497-79567516 | Msa0475870:CDS | 50.0% | |
| TCTAATGGCACACCCAAAGC+TGG | - | chr3_3:79567512-79567531 | None:intergenic | 50.0% | |
| ! | CGGTTAGTTGAAGCAGCTGA+AGG | + | chr3_3:79567737-79567756 | Msa0475870:CDS | 50.0% |
| GTACTCTCCATGGACATGAG+AGG | - | chr3_3:79567798-79567817 | None:intergenic | 50.0% | |
| CACCCAAAGCTGGTGTCCAT+TGG | - | chr3_3:79567502-79567521 | None:intergenic | 55.0% | |
| TGGTGACCACTTTAGCCCTC+TGG | + | chr3_3:79567604-79567623 | Msa0475870:CDS | 55.0% | |
| CTCTCCATGGACATGAGAGG+TGG | - | chr3_3:79567795-79567814 | None:intergenic | 55.0% | |
| CACCCAAAGCTGGTGTCCAT+TGG | - | chr3_3:79567502-79567521 | None:intergenic | 55.0% | |
| TGGTGACCACTTTAGCCCTC+TGG | + | chr3_3:79567604-79567623 | Msa0475870:CDS | 55.0% | |
| CTCTCCATGGACATGAGAGG+TGG | - | chr3_3:79567795-79567814 | None:intergenic | 55.0% | |
| GCGGCCACCTCTCATGTCCA+TGG | + | chr3_3:79567788-79567807 | Msa0475870:CDS | 65.0% | |
| GCGGCCACCTCTCATGTCCA+TGG | + | chr3_3:79567788-79567807 | Msa0475870:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 79566970 | 79568015 | 79566970 | ID=Msa0475870;Name=Msa0475870 |
| chr3_3 | mRNA | 79566970 | 79568015 | 79566970 | ID=Msa0475870-mRNA-1;Parent=Msa0475870;Name=Msa0475870-mRNA-1;_AED=0.04;_eAED=0.04;_QI=12|1|0.5|1|1|1|2|0|313 |
| chr3_3 | exon | 79566970 | 79567311 | 79566970 | ID=Msa0475870-mRNA-1:exon:21550;Parent=Msa0475870-mRNA-1 |
| chr3_3 | exon | 79567404 | 79568015 | 79567404 | ID=Msa0475870-mRNA-1:exon:21551;Parent=Msa0475870-mRNA-1 |
| chr3_3 | five_prime_UTR | 79566970 | 79566981 | 79566970 | ID=Msa0475870-mRNA-1:five_prime_utr;Parent=Msa0475870-mRNA-1 |
| chr3_3 | CDS | 79566982 | 79567311 | 79566982 | ID=Msa0475870-mRNA-1:cds;Parent=Msa0475870-mRNA-1 |
| chr3_3 | CDS | 79567404 | 79568015 | 79567404 | ID=Msa0475870-mRNA-1:cds;Parent=Msa0475870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
