Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0224560 | XP_003597635.1 | 98.621 | 145 | 2 | 0 | 30 | 174 | 1 | 145 | 1.95e-99 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0224560 | sp|Q9M0E2|RL282_ARATH | 71.329 | 143 | 41 | 0 | 30 | 172 | 1 | 143 | 2.59e-71 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0224560 | G7IUL4 | 98.621 | 145 | 2 | 0 | 30 | 174 | 1 | 145 | 9.30e-100 | 293 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0224560 | 0.805347 | 1.394710e-49 | -8.615850e-47 |
| Msa0002790 | Msa0224560 | 0.829631 | 4.621124e-55 | -8.615850e-47 |
| Msa0042280 | Msa0224560 | 0.824021 | 1.011359e-53 | -8.615850e-47 |
| Msa0045730 | Msa0224560 | 0.873425 | 1.485736e-67 | -8.615850e-47 |
| Msa0057610 | Msa0224560 | 0.816770 | 4.658411e-52 | -8.615850e-47 |
| Msa0077010 | Msa0224560 | 0.844759 | 6.194537e-59 | -8.615850e-47 |
| Msa0082280 | Msa0224560 | 0.801448 | 8.962115e-49 | -8.615850e-47 |
| Msa0097580 | Msa0224560 | 0.801044 | 1.084297e-48 | -8.615850e-47 |
| Msa0113130 | Msa0224560 | 0.824310 | 8.653023e-54 | -8.615850e-47 |
| Msa0113240 | Msa0224560 | 0.815098 | 1.100225e-51 | -8.615850e-47 |
| Msa0116130 | Msa0224560 | 0.841897 | 3.596642e-58 | -8.615850e-47 |
| Msa0118710 | Msa0224560 | 0.826943 | 2.055272e-54 | -8.615850e-47 |
| Msa0121820 | Msa0224560 | 0.800916 | 1.151175e-48 | -8.615850e-47 |
| Msa0123010 | Msa0224560 | 0.825500 | 4.532347e-54 | -8.615850e-47 |
| Msa0128860 | Msa0224560 | 0.801968 | 7.008523e-49 | -8.615850e-47 |
| Msa0133540 | Msa0224560 | 0.803963 | 2.712425e-49 | -8.615850e-47 |
| Msa0165950 | Msa0224560 | 0.801698 | 7.963422e-49 | -8.615850e-47 |
| Msa0166750 | Msa0224560 | 0.839580 | 1.455077e-57 | -8.615850e-47 |
| Msa0167480 | Msa0224560 | 0.844021 | 9.781764e-59 | -8.615850e-47 |
| Msa0174730 | Msa0224560 | 0.801110 | 1.050753e-48 | -8.615850e-47 |
| Msa0174770 | Msa0224560 | 0.818109 | 2.326552e-52 | -8.615850e-47 |
| Msa0179030 | Msa0224560 | 0.830854 | 2.322803e-55 | -8.615850e-47 |
| Msa0181490 | Msa0224560 | 0.808848 | 2.530887e-50 | -8.615850e-47 |
| Msa0181610 | Msa0224560 | 0.805555 | 1.261723e-49 | -8.615850e-47 |
| Msa0218830 | Msa0224560 | 0.823378 | 1.430913e-53 | -8.615850e-47 |
| Msa0219120 | Msa0224560 | 0.851596 | 8.008367e-61 | -8.615850e-47 |
| Msa0221030 | Msa0224560 | 0.857712 | 1.354439e-62 | -8.615850e-47 |
| Msa0224560 | Msa0230520 | 0.827935 | 1.188347e-54 | -8.615850e-47 |
| Msa0224560 | Msa0231100 | 0.802372 | 5.787650e-49 | -8.615850e-47 |
| Msa0224560 | Msa0245060 | 0.815732 | 7.949020e-52 | -8.615850e-47 |
| Msa0224560 | Msa0258850 | 0.840002 | 1.129889e-57 | -8.615850e-47 |
| Msa0224560 | Msa0262480 | 0.821582 | 3.740776e-53 | -8.615850e-47 |
| Msa0224560 | Msa0280430 | 0.821599 | 3.705844e-53 | -8.615850e-47 |
| Msa0224560 | Msa0283390 | 0.825160 | 5.454835e-54 | -8.615850e-47 |
| Msa0224560 | Msa0298200 | 0.846787 | 1.743902e-59 | -8.615850e-47 |
| Msa0224560 | Msa0300350 | 0.806764 | 7.020379e-50 | -8.615850e-47 |
| Msa0224560 | Msa0304590 | 0.824957 | 6.090820e-54 | -8.615850e-47 |
| Msa0224560 | Msa0304660 | 0.829534 | 4.878995e-55 | -8.615850e-47 |
| Msa0224560 | Msa0306690 | 0.833883 | 4.129502e-56 | -8.615850e-47 |
| Msa0224560 | Msa0321640 | 0.807786 | 4.264396e-50 | -8.615850e-47 |
| Msa0224560 | Msa0327300 | 0.802341 | 5.874718e-49 | -8.615850e-47 |
| Msa0224560 | Msa0331700 | 0.829366 | 5.358326e-55 | -8.615850e-47 |
| Msa0224560 | Msa0348830 | 0.869086 | 4.029823e-66 | -8.615850e-47 |
| Msa0224560 | Msa0376820 | 0.831545 | 1.570896e-55 | -8.615850e-47 |
| Msa0224560 | Msa0384880 | 0.815328 | 9.778530e-52 | -8.615850e-47 |
| Msa0224560 | Msa0408240 | -0.831423 | 1.683556e-55 | -8.615850e-47 |
| Msa0224560 | Msa0423750 | 0.823090 | 1.669780e-53 | -8.615850e-47 |
| Msa0224560 | Msa0443390 | 0.840301 | 9.443391e-58 | -8.615850e-47 |
| Msa0224560 | Msa0472130 | 0.829109 | 6.185405e-55 | -8.615850e-47 |
| Msa0224560 | Msa0481850 | 0.823757 | 1.166580e-53 | -8.615850e-47 |
| Msa0224560 | Msa0483110 | 0.818425 | 1.973116e-52 | -8.615850e-47 |
| Msa0224560 | Msa0490820 | 0.853125 | 2.938874e-61 | -8.615850e-47 |
| Msa0224560 | Msa0526540 | 0.825476 | 4.591882e-54 | -8.615850e-47 |
| Msa0224560 | Msa0527150 | 0.820598 | 6.302140e-53 | -8.615850e-47 |
| Msa0224560 | Msa0531650 | 0.805833 | 1.102736e-49 | -8.615850e-47 |
| Msa0224560 | Msa0534750 | 0.888728 | 4.562648e-73 | -8.615850e-47 |
| Msa0224560 | Msa0576940 | 0.832660 | 8.328852e-56 | -8.615850e-47 |
| Msa0224560 | Msa0581070 | 0.804495 | 2.101473e-49 | -8.615850e-47 |
| Msa0224560 | Msa0588630 | -0.825264 | 5.153077e-54 | -8.615850e-47 |
| Msa0224560 | Msa0590940 | 0.875848 | 2.229649e-68 | -8.615850e-47 |
| Msa0224560 | Msa0604960 | 0.854181 | 1.460046e-61 | -8.615850e-47 |
| Msa0224560 | Msa0615580 | 0.805117 | 1.558643e-49 | -8.615850e-47 |
| Msa0224560 | Msa0622750 | 0.824128 | 9.545027e-54 | -8.615850e-47 |
| Msa0224560 | Msa0623200 | 0.861841 | 7.724281e-64 | -8.615850e-47 |
| Msa0224560 | Msa0633570 | 0.807343 | 5.293579e-50 | -8.615850e-47 |
| Msa0224560 | Msa0659030 | 0.824633 | 7.261063e-54 | -8.615850e-47 |
| Msa0224560 | Msa0666230 | 0.838580 | 2.642296e-57 | -8.615850e-47 |
| Msa0224560 | Msa0683780 | 0.825521 | 4.479726e-54 | -8.615850e-47 |
| Msa0224560 | Msa0705000 | 0.840681 | 7.509664e-58 | -8.615850e-47 |
| Msa0224560 | Msa0705040 | 0.843967 | 1.011429e-58 | -8.615850e-47 |
| Msa0224560 | Msa0706500 | 0.807981 | 3.876106e-50 | -8.615850e-47 |
| Msa0224560 | Msa0712610 | 0.865248 | 6.775942e-65 | -8.615850e-47 |
| Msa0224560 | Msa0729200 | 0.849436 | 3.238371e-60 | -8.615850e-47 |
| Msa0224560 | Msa0738100 | 0.851368 | 9.290463e-61 | -8.615850e-47 |
| Msa0224560 | Msa0769590 | 0.849437 | 3.235754e-60 | -8.615850e-47 |
| Msa0224560 | Msa0781080 | 0.821501 | 3.904655e-53 | -8.615850e-47 |
| Msa0224560 | Msa0785130 | 0.861495 | 9.856458e-64 | -8.615850e-47 |
| Msa0224560 | Msa0792420 | 0.864753 | 9.689600e-65 | -8.615850e-47 |
| Msa0224560 | Msa0806880 | 0.841489 | 4.608348e-58 | -8.615850e-47 |
| Msa0224560 | Msa0808800 | 0.803285 | 3.749141e-49 | -8.615850e-47 |
| Msa0224560 | Msa0817540 | 0.843452 | 1.389162e-58 | -8.615850e-47 |
| Msa0224560 | Msa0855010 | 0.817317 | 3.510650e-52 | -8.615850e-47 |
| Msa0224560 | Msa0895390 | 0.822166 | 2.739547e-53 | -8.615850e-47 |
| Msa0224560 | Msa0945480 | 0.876529 | 1.298702e-68 | -8.615850e-47 |
| Msa0224560 | Msa1019240 | 0.834696 | 2.581152e-56 | -8.615850e-47 |
| Msa0224560 | Msa1019260 | 0.833048 | 6.671234e-56 | -8.615850e-47 |
| Msa0224560 | Msa1036550 | 0.811976 | 5.347993e-51 | -8.615850e-47 |
| Msa0224560 | Msa1048690 | 0.817139 | 3.849230e-52 | -8.615850e-47 |
| Msa0224560 | Msa1072710 | 0.807592 | 4.689349e-50 | -8.615850e-47 |
| Msa0224560 | Msa1080350 | 0.824098 | 9.702283e-54 | -8.615850e-47 |
| Msa0224560 | Msa1085470 | 0.823337 | 1.462571e-53 | -8.615850e-47 |
| Msa0224560 | Msa1088490 | 0.838089 | 3.536699e-57 | -8.615850e-47 |
| Msa0224560 | Msa1104210 | 0.822991 | 1.761415e-53 | -8.615850e-47 |
| Msa0224560 | Msa1125500 | 0.883376 | 4.726587e-71 | -8.615850e-47 |
| Msa0224560 | Msa1125580 | 0.869349 | 3.309761e-66 | -8.615850e-47 |
| Msa0224560 | Msa1125860 | 0.825048 | 5.797822e-54 | -8.615850e-47 |
| Msa0224560 | Msa1126060 | 0.813938 | 1.986636e-51 | -8.615850e-47 |
| Msa0224560 | Msa1126510 | 0.808872 | 2.501976e-50 | -8.615850e-47 |
| Msa0224560 | Msa1156190 | 0.809772 | 1.604298e-50 | -8.615850e-47 |
| Msa0224560 | Msa1166860 | 0.825987 | 3.473960e-54 | -8.615850e-47 |
| Msa0224560 | Msa1166870 | 0.872878 | 2.267025e-67 | -8.615850e-47 |
| Msa0224560 | Msa1184370 | 0.816506 | 5.338949e-52 | -8.615850e-47 |
| Msa0224560 | Msa1206090 | 0.823117 | 1.646224e-53 | -8.615850e-47 |
| Msa0224560 | Msa1208020 | 0.829644 | 4.587968e-55 | -8.615850e-47 |
| Msa0224560 | Msa1227690 | 0.824391 | 8.277867e-54 | -8.615850e-47 |
| Msa0224560 | Msa1234980 | 0.806020 | 1.007584e-49 | -8.615850e-47 |
| Msa0224560 | Msa1241190 | 0.822148 | 2.765463e-53 | -8.615850e-47 |
| Msa0224560 | Msa1256840 | 0.803421 | 3.513634e-49 | -8.615850e-47 |
| Msa0224560 | Msa1256950 | 0.806971 | 6.348844e-50 | -8.615850e-47 |
| Msa0224560 | Msa1298050 | 0.800440 | 1.439519e-48 | -8.615850e-47 |
| Msa0224560 | Msa1310690 | 0.802386 | 5.749745e-49 | -8.615850e-47 |
| Msa0224560 | Msa1321790 | 0.850439 | 1.696414e-60 | -8.615850e-47 |
| Msa0224560 | Msa1329510 | 0.830004 | 3.749326e-55 | -8.615850e-47 |
| Msa0224560 | Msa1329540 | 0.838636 | 2.556642e-57 | -8.615850e-47 |
| Msa0224560 | Msa1331250 | 0.804999 | 1.649831e-49 | -8.615850e-47 |
| Msa0224560 | Msa1331710 | 0.806632 | 7.486979e-50 | -8.615850e-47 |
| Msa0224560 | Msa1349570 | 0.883151 | 5.716558e-71 | -8.615850e-47 |
| Msa0224560 | Msa1356790 | 0.869527 | 2.897456e-66 | -8.615850e-47 |
| Msa0224560 | Msa1362790 | 0.835107 | 2.034238e-56 | -8.615850e-47 |
| Msa0224560 | Msa1363330 | 0.819517 | 1.114025e-52 | -8.615850e-47 |
| Msa0224560 | Msa1366180 | 0.810369 | 1.193102e-50 | -8.615850e-47 |
| Msa0224560 | Msa1369190 | 0.860819 | 1.583496e-63 | -8.615850e-47 |
| Msa0224560 | Msa1370860 | 0.813026 | 3.152122e-51 | -8.615850e-47 |
| Msa0224560 | Msa1379760 | 0.813151 | 2.959740e-51 | -8.615850e-47 |
| Msa0224560 | Msa1386600 | 0.818589 | 1.811486e-52 | -8.615850e-47 |
| Msa0224560 | Msa1392590 | 0.807382 | 5.193636e-50 | -8.615850e-47 |
| Msa0224560 | Msa1413260 | 0.801848 | 7.417499e-49 | -8.615850e-47 |
| Msa0224560 | Msa1413500 | 0.839250 | 1.772463e-57 | -8.615850e-47 |
| Msa0224560 | Msa1425670 | 0.815938 | 7.153059e-52 | -8.615850e-47 |
| Msa0224560 | Msa1426370 | 0.811924 | 5.488331e-51 | -8.615850e-47 |
| Msa0224560 | Msa1426490 | 0.860958 | 1.435974e-63 | -8.615850e-47 |
| Msa0224560 | Msa1427560 | 0.824871 | 6.380958e-54 | -8.615850e-47 |
| Msa0224560 | Msa1428810 | 0.834465 | 2.951588e-56 | -8.615850e-47 |
| Msa0224560 | Msa1442850 | 0.830591 | 2.694641e-55 | -8.615850e-47 |
| Msa0224560 | Msa1450280 | 0.857035 | 2.146237e-62 | -8.615850e-47 |
| Msa0224560 | Msa1455950 | 0.804579 | 2.019239e-49 | -8.615850e-47 |
| Msa0224560 | Msa1456050 | 0.861356 | 1.086390e-63 | -8.615850e-47 |
| Msa0224560 | Msa1462860 | 0.860042 | 2.721764e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0224560 | MtrunA17_Chr2g0330561 | 98.621 | 145 | 2 | 0 | 30 | 174 | 1 | 145 | 1.79e-103 | 293 |
| Msa0224560 | MtrunA17_Chr8g0341511 | 90.210 | 143 | 14 | 0 | 30 | 172 | 1 | 143 | 2.27e-93 | 267 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0224560 | AT4G29410.1 | 71.329 | 143 | 41 | 0 | 30 | 172 | 1 | 143 | 2.64e-72 | 214 |
| Msa0224560 | AT4G29410.2 | 71.329 | 143 | 41 | 0 | 30 | 172 | 1 | 143 | 2.64e-72 | 214 |
| Msa0224560 | AT2G19730.2 | 72.028 | 143 | 40 | 0 | 30 | 172 | 1 | 143 | 1.44e-71 | 213 |
| Msa0224560 | AT2G19730.1 | 72.028 | 143 | 40 | 0 | 30 | 172 | 1 | 143 | 1.44e-71 | 213 |
| Msa0224560 | AT2G19730.3 | 72.028 | 143 | 40 | 0 | 30 | 172 | 1 | 143 | 1.44e-71 | 213 |
Find 53 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTTCAACATTGATTAAA+TGG | 0.228207 | 2_1:-74465853 | None:intergenic |
| TTAAGATTGTAAAGATTATT+AGG | 0.236572 | 2_1:-74462776 | None:intergenic |
| GCCTTTCCCATTGCAGTATC+AGG | 0.242570 | 2_1:+74460885 | Msa0224560:CDS |
| TCCCATCAAACCTTTCAAAT+TGG | 0.253890 | 2_1:-74465876 | None:intergenic |
| CGTCTTATTATACTTTAAAC+TGG | 0.279627 | 2_1:+74465713 | Msa0224560:three_prime_UTR |
| CAAGGTTGAGTGCTGTTAAT+AGG | 0.286054 | 2_1:+74465484 | Msa0224560:CDS |
| AGAATGCATAAACTACAAAA+AGG | 0.290999 | 2_1:-74465616 | None:intergenic |
| CAGTACCTGGACCACTTGTT+TGG | 0.329181 | 2_1:+74462675 | Msa0224560:CDS |
| TAGAATACTGGAGTTCAGTT+TGG | 0.380104 | 2_1:+74465651 | Msa0224560:three_prime_UTR |
| GAACTCCAGTATTCTAGAAT+AGG | 0.383776 | 2_1:-74465644 | None:intergenic |
| TATCTATAGTCTATGCCATT+TGG | 0.384218 | 2_1:-74465778 | None:intergenic |
| AGCCAATTTGAAAGGTTTGA+TGG | 0.388177 | 2_1:+74465874 | Msa0224560:three_prime_UTR |
| AGAACCCTATTCTAGAATAC+TGG | 0.410113 | 2_1:+74465639 | Msa0224560:three_prime_UTR |
| AGCCTCCGAGTTGCAAAGTC+TGG | 0.420492 | 2_1:+74465507 | Msa0224560:CDS |
| AGTACCTGGACCACTTGTTT+GGG | 0.420976 | 2_1:+74462676 | Msa0224560:CDS |
| GGCTAAGGCTGTGCAAAATC+AGG | 0.425465 | 2_1:+74463503 | Msa0224560:CDS |
| ATGTCGTTAATTAAACAATC+TGG | 0.431871 | 2_1:-74465917 | None:intergenic |
| AAGTGAATTGAGAAGAGAGT+TGG | 0.449263 | 2_1:+74465558 | Msa0224560:exon |
| AACTCCAGTATTCTAGAATA+GGG | 0.453784 | 2_1:-74465643 | None:intergenic |
| GCCAATTTGAAAGGTTTGAT+GGG | 0.456185 | 2_1:+74465875 | Msa0224560:three_prime_UTR |
| AAGAAGATGGCAACAGTACC+TGG | 0.461908 | 2_1:+74462662 | Msa0224560:CDS |
| CTGTTATGAAGAAAGAGTTC+AGG | 0.475739 | 2_1:+74463475 | Msa0224560:CDS |
| CAAAGATCAGTCTGTGTTGT+TGG | 0.477149 | 2_1:+74463401 | Msa0224560:CDS |
| TCTATGTTAATCTAGTTAGC+AGG | 0.477709 | 2_1:-74465810 | None:intergenic |
| AACTTACCTGATACTGCAAT+GGG | 0.478806 | 2_1:-74460891 | None:intergenic |
| ACTGTAACTATTCAGTCTGC+TGG | 0.486689 | 2_1:+74463378 | Msa0224560:CDS |
| CTTATTGCTTATGACTCTCT+CGG | 0.487123 | 2_1:+74460863 | Msa0224560:CDS |
| CTGGCGCTAAGAAGAGAAAC+AGG | 0.489005 | 2_1:+74465526 | Msa0224560:CDS |
| GTTGAACAAGCCAATTTGAA+AGG | 0.503154 | 2_1:+74465866 | Msa0224560:three_prime_UTR |
| CTTAACTCTTACAAATACTC+TGG | 0.515746 | 2_1:+74462794 | Msa0224560:CDS |
| GTTAATTAAACAATCTGGAC+CGG | 0.522102 | 2_1:-74465912 | None:intergenic |
| AAACTTACCTGATACTGCAA+TGG | 0.524313 | 2_1:-74460892 | None:intergenic |
| AGAGCCACCTTCTTAAGATC+AGG | 0.525699 | 2_1:-74465459 | None:intergenic |
| GATTTGTGAAGCAAAGCAGC+AGG | 0.534387 | 2_1:-74463453 | None:intergenic |
| AAGAAGAGAAACAGGCATGC+AGG | 0.536717 | 2_1:+74465534 | Msa0224560:CDS |
| AGAGTTCAGGAGGATGGCTA+AGG | 0.539424 | 2_1:+74463488 | Msa0224560:CDS |
| ATCTCCCAAACAAGTGGTCC+AGG | 0.541178 | 2_1:-74462680 | None:intergenic |
| GTCTTATTATACTTTAAACT+GGG | 0.549531 | 2_1:+74465714 | Msa0224560:three_prime_UTR |
| TTAAGAAGGTGGCTCTTGCA+AGG | 0.561746 | 2_1:+74465466 | Msa0224560:CDS |
| CTACAGACCTGATCTTAAGA+AGG | 0.561878 | 2_1:+74465452 | Msa0224560:CDS |
| ACCTGATACTGCAATGGGAA+AGG | 0.566562 | 2_1:-74460886 | None:intergenic |
| TTCACGATCTCCCAAACAAG+TGG | 0.590177 | 2_1:-74462686 | None:intergenic |
| TAGCGCCAGACTTTGCAACT+CGG | 0.593837 | 2_1:-74465512 | None:intergenic |
| ATTAACATAGAAAACTTACC+TGG | 0.596659 | 2_1:+74465822 | Msa0224560:three_prime_UTR |
| GTTAATCTAGTTAGCAGGAG+AGG | 0.603813 | 2_1:-74465805 | None:intergenic |
| GAAGAAAGAGTTCAGGAGGA+TGG | 0.603864 | 2_1:+74463482 | Msa0224560:CDS |
| CGCCAGACTTTGCAACTCGG+AGG | 0.606941 | 2_1:-74465509 | None:intergenic |
| GATTAAATGGAGTATCAACC+AGG | 0.623747 | 2_1:-74465840 | None:intergenic |
| TGTTGGCAACCACCAAGCCA+AGG | 0.638986 | 2_1:+74463418 | Msa0224560:CDS |
| TTATGAAGAAAGAGTTCAGG+AGG | 0.639998 | 2_1:+74463478 | Msa0224560:CDS |
| CAGACCTGATCTTAAGAAGG+TGG | 0.645097 | 2_1:+74465455 | Msa0224560:CDS |
| CAGTTTAAAGTATAATAAGA+CGG | 0.646637 | 2_1:-74465712 | None:intergenic |
| TTGTTTGGGAGATCGTGAAG+AGG | 0.651216 | 2_1:+74462690 | Msa0224560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAATTTAAAAAAAAAA+TGG | + | chr2_1:74462305-74462324 | Msa0224560:intron | 0.0% |
| !! | AACAAACAAAAAAAATTTAA+TGG | - | chr2_1:74462162-74462181 | None:intergenic | 10.0% |
| !!! | TTTATTTTTTTCTTCTTTAA+GGG | - | chr2_1:74462229-74462248 | None:intergenic | 10.0% |
| !!! | TATAATAGTTTTATGATTAA+TGG | + | chr2_1:74462843-74462862 | Msa0224560:intron | 10.0% |
| !!! | ATAATAGTTTTATGATTAAT+GGG | + | chr2_1:74462844-74462863 | Msa0224560:intron | 10.0% |
| !! | ATTTCTAATTCAAAATAATT+TGG | - | chr2_1:74463745-74463764 | None:intergenic | 10.0% |
| !!! | TTAATTGAAATCATTTTAAA+CGG | + | chr2_1:74464185-74464204 | Msa0224560:intron | 10.0% |
| !!! | AGTAATTTTATCTAATCTAA+TGG | + | chr2_1:74461259-74461278 | Msa0224560:intron | 15.0% |
| !! | ATATGACAAATTTATTTACA+AGG | - | chr2_1:74461286-74461305 | None:intergenic | 15.0% |
| !! | TTGTAAATAAATTTGTCATA+TGG | + | chr2_1:74461285-74461304 | Msa0224560:intron | 15.0% |
| !!! | TTTTCACATTTTCTTATTTA+TGG | - | chr2_1:74461776-74461795 | None:intergenic | 15.0% |
| !!! | AAATTTAATGGTTCAAATTT+TGG | - | chr2_1:74462150-74462169 | None:intergenic | 15.0% |
| !!! | AAATTTTTTTTGTTTGTTCA+AGG | + | chr2_1:74462164-74462183 | Msa0224560:intron | 15.0% |
| !!! | GTTTATTTTTTTCTTCTTTA+AGG | - | chr2_1:74462230-74462249 | None:intergenic | 15.0% |
| !! | TTAAGATTGTAAAGATTATT+AGG | - | chr2_1:74462779-74462798 | None:intergenic | 15.0% |
| !!! | GTAGCAATTTTAATTTTTTT+TGG | + | chr2_1:74463298-74463317 | Msa0224560:intron | 15.0% |
| !!! | TGTTTTTATTATGGTATAAT+AGG | + | chr2_1:74463339-74463358 | Msa0224560:intron | 15.0% |
| !! | TAGTTCAAAAATAAAACATT+TGG | + | chr2_1:74463837-74463856 | Msa0224560:intron | 15.0% |
| !!! | TTTATTTACATAAAAGCATT+TGG | + | chr2_1:74463870-74463889 | Msa0224560:intron | 15.0% |
| !! | AACAAATAGATAATTTGAAT+GGG | - | chr2_1:74464166-74464185 | None:intergenic | 15.0% |
| !! | AAACAAATAGATAATTTGAA+TGG | - | chr2_1:74464167-74464186 | None:intergenic | 15.0% |
| !!! | AAAATAATTTTGTACCTATA+TGG | + | chr2_1:74464793-74464812 | Msa0224560:intron | 15.0% |
| !! | AAACTTGAATTAAAAAATCA+AGG | - | chr2_1:74465197-74465216 | None:intergenic | 15.0% |
| !!! | TTCAATTTAAATTTTCCAAA+TGG | + | chr2_1:74465763-74465782 | Msa0224560:three_prime_UTR | 15.0% |
| !! | CATTATTATAGCATAAATGT+GGG | + | chr2_1:74461044-74461063 | Msa0224560:intron | 20.0% |
| !! | ATTATTATAGCATAAATGTG+GGG | + | chr2_1:74461045-74461064 | Msa0224560:intron | 20.0% |
| !!! | AGCTTTTAACATAAGATATT+TGG | + | chr2_1:74461113-74461132 | Msa0224560:intron | 20.0% |
| !! | CAGAATATGTATCTATAAAT+TGG | - | chr2_1:74461353-74461372 | None:intergenic | 20.0% |
| !!! | TATGATTTTTCAGAAAATGT+GGG | - | chr2_1:74461867-74461886 | None:intergenic | 20.0% |
| !! | TCTATAAAGTCTAACTTAAT+TGG | + | chr2_1:74462008-74462027 | Msa0224560:intron | 20.0% |
| !! | GATTTATAGCAAAATGAAAT+TGG | - | chr2_1:74462473-74462492 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTATATTCTGTGA+TGG | + | chr2_1:74462880-74462899 | Msa0224560:intron | 20.0% |
| !! | TTTGCATCTTAAAGTATAAT+GGG | + | chr2_1:74462946-74462965 | Msa0224560:intron | 20.0% |
| !! | ATCACATTTGATTAAAACTT+AGG | - | chr2_1:74463188-74463207 | None:intergenic | 20.0% |
| !!! | CTTACTTCATGTTTTTATTA+TGG | + | chr2_1:74463330-74463349 | Msa0224560:intron | 20.0% |
| !! | TTATTATGGTATAATAGGTT+TGG | + | chr2_1:74463344-74463363 | Msa0224560:intron | 20.0% |
| !!! | AGTTGAAAATTGTTTTGAAT+TGG | + | chr2_1:74463713-74463732 | Msa0224560:intron | 20.0% |
| !! | TTAGAAATATTCACGATAAT+TGG | + | chr2_1:74463757-74463776 | Msa0224560:intron | 20.0% |
| !!! | GTTTTATTTTTGAACTAATC+CGG | - | chr2_1:74463834-74463853 | None:intergenic | 20.0% |
| !! | ACAAAATGACTTAGATAAAA+AGG | - | chr2_1:74464392-74464411 | None:intergenic | 20.0% |
| !!! | AAACTGTTTTGAATTATAAG+AGG | - | chr2_1:74464662-74464681 | None:intergenic | 20.0% |
| !! | ACAATAAAGAAGAGATAAAA+AGG | - | chr2_1:74464700-74464719 | None:intergenic | 20.0% |
| !! | AAATTATGAAGAGATCAAAA+GGG | - | chr2_1:74464940-74464959 | None:intergenic | 20.0% |
| !! | TAAATTATGAAGAGATCAAA+AGG | - | chr2_1:74464941-74464960 | None:intergenic | 20.0% |
| !!! | TAATTTATGTTATTTGTCTG+AGG | + | chr2_1:74464954-74464973 | Msa0224560:intron | 20.0% |
| !!! | AATTTATGTTATTTGTCTGA+GGG | + | chr2_1:74464955-74464974 | Msa0224560:intron | 20.0% |
| !!! | CCATTCTAAAATAATTTGTT+GGG | - | chr2_1:74465278-74465297 | None:intergenic | 20.0% |
| !!! | ACCATTCTAAAATAATTTGT+TGG | - | chr2_1:74465279-74465298 | None:intergenic | 20.0% |
| !!! | CAGTTTAAAGTATAATAAGA+CGG | - | chr2_1:74465715-74465734 | None:intergenic | 20.0% |
| !!! | GTCTTATTATACTTTAAACT+GGG | + | chr2_1:74465714-74465733 | Msa0224560:three_prime_UTR | 20.0% |
| ! | TGATAACTGAAATGTTGTAA+TGG | - | chr2_1:74460974-74460993 | None:intergenic | 25.0% |
| ! | ATATTCATCATTAGTATGAG+CGG | + | chr2_1:74461005-74461024 | Msa0224560:intron | 25.0% |
| ! | CCACATTTATGCTATAATAA+TGG | - | chr2_1:74461046-74461065 | None:intergenic | 25.0% |
| ! | CCATTATTATAGCATAAATG+TGG | + | chr2_1:74461043-74461062 | Msa0224560:intron | 25.0% |
| !!! | TGTCATCTTGTATTTTTTTC+AGG | + | chr2_1:74461234-74461253 | Msa0224560:intron | 25.0% |
| !!! | GTCATCTTGTATTTTTTTCA+GGG | + | chr2_1:74461235-74461254 | Msa0224560:intron | 25.0% |
| !!! | TCATCTTGTATTTTTTTCAG+GGG | + | chr2_1:74461236-74461255 | Msa0224560:intron | 25.0% |
| ! | TGACTACTGAGAAATATATA+AGG | + | chr2_1:74461587-74461606 | Msa0224560:intron | 25.0% |
| !! | AATATATTTTGTAAGGAGTC+TGG | + | chr2_1:74461615-74461634 | Msa0224560:intron | 25.0% |
| !!! | ATGATTTTTCAGAAAATGTG+GGG | - | chr2_1:74461866-74461885 | None:intergenic | 25.0% |
| !!! | GTATGATTTTTCAGAAAATG+TGG | - | chr2_1:74461868-74461887 | None:intergenic | 25.0% |
| !!! | ATGAATACACTTTTGAAACA+AGG | + | chr2_1:74461894-74461913 | Msa0224560:intron | 25.0% |
| !!! | TTTTTTGTTTGTTCAAGGAA+AGG | + | chr2_1:74462169-74462188 | Msa0224560:intron | 25.0% |
| !!! | TTTTGTCATTGTGCTTTTTA+GGG | + | chr2_1:74462558-74462577 | Msa0224560:intron | 25.0% |
| !!! | TTTGATTTTCAGATCAGATT+TGG | + | chr2_1:74462586-74462605 | Msa0224560:intron | 25.0% |
| !! | TCTGTTTTGTATTGTGTTAT+AGG | + | chr2_1:74462621-74462640 | Msa0224560:intron | 25.0% |
| !!! | TCTTTTTTGGTTAAAGAGTT+TGG | + | chr2_1:74462719-74462738 | Msa0224560:CDS | 25.0% |
| ! | CTTTGCATCTTAAAGTATAA+TGG | + | chr2_1:74462945-74462964 | Msa0224560:intron | 25.0% |
| ! | TAAGCATTTATTATACTGCT+TGG | - | chr2_1:74463141-74463160 | None:intergenic | 25.0% |
| !! | AATAGTTACAGTTTTCTTGT+TGG | - | chr2_1:74463370-74463389 | None:intergenic | 25.0% |
| !! | GTTTTCATGTTTCACAATAT+TGG | + | chr2_1:74463617-74463636 | Msa0224560:intron | 25.0% |
| ! | ATTCATATAGTTGTCATTCT+AGG | + | chr2_1:74463652-74463671 | Msa0224560:intron | 25.0% |
| !!! | GAAAATTGTTTTGAATTGGT+TGG | + | chr2_1:74463717-74463736 | Msa0224560:intron | 25.0% |
| ! | AAAATTCGAACAAAGAAAGA+GGG | - | chr2_1:74463946-74463965 | None:intergenic | 25.0% |
| ! | TGAAATATTATTGTTACGCT+TGG | + | chr2_1:74464023-74464042 | Msa0224560:intron | 25.0% |
| !!! | AGTTTTAAGTTACAAAAGAG+AGG | - | chr2_1:74464128-74464147 | None:intergenic | 25.0% |
| ! | ATTTACACAGATAAATCACA+TGG | - | chr2_1:74464470-74464489 | None:intergenic | 25.0% |
| ! | ATAAAAAGGTTAGATTCACT+AGG | - | chr2_1:74464686-74464705 | None:intergenic | 25.0% |
| ! | GGATTCTTCTTATATGTTAA+CGG | - | chr2_1:74464836-74464855 | None:intergenic | 25.0% |
| !! | ATTTATGTTATTTGTCTGAG+GGG | + | chr2_1:74464956-74464975 | Msa0224560:intron | 25.0% |
| ! | TAAATGCAAAATAGCATATG+AGG | - | chr2_1:74465009-74465028 | None:intergenic | 25.0% |
| !!! | AAGTTTTTATTTAGAGAAGC+TGG | + | chr2_1:74465211-74465230 | Msa0224560:intron | 25.0% |
| !!! | CCCAACAAATTATTTTAGAA+TGG | + | chr2_1:74465275-74465294 | Msa0224560:intron | 25.0% |
| ! | TCAAATTAGCTCATAGATTA+AGG | - | chr2_1:74465392-74465411 | None:intergenic | 25.0% |
| ! | GAATGCATAAACTACAAAAA+GGG | - | chr2_1:74465618-74465637 | None:intergenic | 25.0% |
| ! | AGAATGCATAAACTACAAAA+AGG | - | chr2_1:74465619-74465638 | None:intergenic | 25.0% |
| !! | CGTCTTATTATACTTTAAAC+TGG | + | chr2_1:74465713-74465732 | Msa0224560:three_prime_UTR | 25.0% |
| ! | ATTAACATAGAAAACTTACC+TGG | + | chr2_1:74465822-74465841 | Msa0224560:three_prime_UTR | 25.0% |
| !! | CTTGTTCAACATTGATTAAA+TGG | - | chr2_1:74465856-74465875 | None:intergenic | 25.0% |
| ! | ATGTCGTTAATTAAACAATC+TGG | - | chr2_1:74465920-74465939 | None:intergenic | 25.0% |
| !! | AGATATTTGGTTGATGAAGA+TGG | + | chr2_1:74461126-74461145 | Msa0224560:intron | 30.0% |
| ! | AAGCTCAACAAAAAAGTATG+AGG | + | chr2_1:74461198-74461217 | Msa0224560:intron | 30.0% |
| GCATTTATGCTTATTCAATC+TGG | + | chr2_1:74461492-74461511 | Msa0224560:intron | 30.0% | |
| ACTGAGAAATATATAAGGAG+TGG | + | chr2_1:74461592-74461611 | Msa0224560:intron | 30.0% | |
| ! | GGAGTGGAATATATTTTGTA+AGG | + | chr2_1:74461608-74461627 | Msa0224560:intron | 30.0% |
| AAAAACTATGCTCAGAGTTT+GGG | - | chr2_1:74461684-74461703 | None:intergenic | 30.0% | |
| TAAAAACTATGCTCAGAGTT+TGG | - | chr2_1:74461685-74461704 | None:intergenic | 30.0% | |
| ! | TAATAATTCCCTCGTTTTGT+TGG | + | chr2_1:74461711-74461730 | Msa0224560:intron | 30.0% |
| !! | AGGAAAGGCATTAAAGATAT+TGG | + | chr2_1:74462184-74462203 | Msa0224560:intron | 30.0% |
| TCCAAATCCAAAGCAAATTA+GGG | + | chr2_1:74462444-74462463 | Msa0224560:intron | 30.0% | |
| ATGACAAAACGAAAATACCT+TGG | - | chr2_1:74462547-74462566 | None:intergenic | 30.0% | |
| !! | GTTTTGTCATTGTGCTTTTT+AGG | + | chr2_1:74462557-74462576 | Msa0224560:intron | 30.0% |
| CTTAACTCTTACAAATACTC+TGG | + | chr2_1:74462794-74462813 | Msa0224560:CDS | 30.0% | |
| CTTGTTGAAATTAGTGAAGT+TGG | + | chr2_1:74463222-74463241 | Msa0224560:intron | 30.0% | |
| ATAAAACATTTGGAAACGTG+TGG | + | chr2_1:74463847-74463866 | Msa0224560:intron | 30.0% | |
| AAATTCGAACAAAGAAAGAG+GGG | - | chr2_1:74463945-74463964 | None:intergenic | 30.0% | |
| GAAAATTCGAACAAAGAAAG+AGG | - | chr2_1:74463947-74463966 | None:intergenic | 30.0% | |
| TAATTTGAATGGGAACGTAA+GGG | - | chr2_1:74464156-74464175 | None:intergenic | 30.0% | |
| ATAATTTGAATGGGAACGTA+AGG | - | chr2_1:74464157-74464176 | None:intergenic | 30.0% | |
| AGATAAATCACATGGCAATT+AGG | - | chr2_1:74464462-74464481 | None:intergenic | 30.0% | |
| GGATTCATCTTATATGTTAG+AGG | - | chr2_1:74464548-74464567 | None:intergenic | 30.0% | |
| ATATAAGATGAATCCCTATG+TGG | + | chr2_1:74464553-74464572 | Msa0224560:intron | 30.0% | |
| TATAAGATGAATCCCTATGT+GGG | + | chr2_1:74464554-74464573 | Msa0224560:intron | 30.0% | |
| ! | TGAAATTTACTTGTTACGCT+TGG | + | chr2_1:74464586-74464605 | Msa0224560:intron | 30.0% |
| TTGAATTATAAGAGGTCACT+AGG | - | chr2_1:74464654-74464673 | None:intergenic | 30.0% | |
| ATTTACACAGATAAATCGCA+TGG | - | chr2_1:74464772-74464791 | None:intergenic | 30.0% | |
| ATATAAGAAGAATCCCTATG+TGG | + | chr2_1:74464841-74464860 | Msa0224560:intron | 30.0% | |
| TATAAGAAGAATCCCTATGT+GGG | + | chr2_1:74464842-74464861 | Msa0224560:intron | 30.0% | |
| ! | TGAAATTTACTTGTTACGCT+TGG | + | chr2_1:74464586-74464605 | Msa0224560:intron | 30.0% |
| ! | TGAAATTTACTTGTTACGCT+TGG | + | chr2_1:74464586-74464605 | Msa0224560:intron | 30.0% |
| ! | AGTCATTTGCTGCAAAATAA+AGG | - | chr2_1:74465242-74465261 | None:intergenic | 30.0% |
| !! | AACTCCAGTATTCTAGAATA+GGG | - | chr2_1:74465646-74465665 | None:intergenic | 30.0% |
| TATCTATAGTCTATGCCATT+TGG | - | chr2_1:74465781-74465800 | None:intergenic | 30.0% | |
| TCTATGTTAATCTAGTTAGC+AGG | - | chr2_1:74465813-74465832 | None:intergenic | 30.0% | |
| GTTAATTAAACAATCTGGAC+CGG | - | chr2_1:74465915-74465934 | None:intergenic | 30.0% | |
| CTTATTGCTTATGACTCTCT+CGG | + | chr2_1:74460863-74460882 | Msa0224560:CDS | 35.0% | |
| AACTTACCTGATACTGCAAT+GGG | - | chr2_1:74460894-74460913 | None:intergenic | 35.0% | |
| AAACTTACCTGATACTGCAA+TGG | - | chr2_1:74460895-74460914 | None:intergenic | 35.0% | |
| ATTGCAGTATCAGGTAAGTT+TGG | + | chr2_1:74460894-74460913 | Msa0224560:intron | 35.0% | |
| CTTGCATATATGCCTTCAAA+AGG | - | chr2_1:74461095-74461114 | None:intergenic | 35.0% | |
| TAAATGTGCAAAAACAGTGC+TGG | + | chr2_1:74461381-74461400 | Msa0224560:intron | 35.0% | |
| !! | CAAAAACAGTGCTGGTTTAA+TGG | + | chr2_1:74461389-74461408 | Msa0224560:intron | 35.0% |
| CATAGCACTGTGACATATTA+GGG | - | chr2_1:74461435-74461454 | None:intergenic | 35.0% | |
| TCATAGCACTGTGACATATT+AGG | - | chr2_1:74461436-74461455 | None:intergenic | 35.0% | |
| AATATGTCACAGTGCTATGA+AGG | + | chr2_1:74461436-74461455 | Msa0224560:intron | 35.0% | |
| TTGGGCAAACATTGAAAGAA+AGG | - | chr2_1:74461666-74461685 | None:intergenic | 35.0% | |
| TGATGAATCCAACAAAACGA+GGG | - | chr2_1:74461722-74461741 | None:intergenic | 35.0% | |
| ATGATGAATCCAACAAAACG+AGG | - | chr2_1:74461723-74461742 | None:intergenic | 35.0% | |
| GTCCAAATCCAAAGCAAATT+AGG | + | chr2_1:74462443-74462462 | Msa0224560:intron | 35.0% | |
| !! | ACCCTAATTTGCTTTGGATT+TGG | - | chr2_1:74462448-74462467 | None:intergenic | 35.0% |
| !! | TTGGAAACCCTAATTTGCTT+TGG | - | chr2_1:74462454-74462473 | None:intergenic | 35.0% |
| GAGTGAGATTTGAGAAGAAT+AGG | - | chr2_1:74462510-74462529 | None:intergenic | 35.0% | |
| ! | AATACCTTGGATTGTTGTTG+AGG | - | chr2_1:74462534-74462553 | None:intergenic | 35.0% |
| GAAGAAGAAGAAGAAGAAGA+TGG | + | chr2_1:74462646-74462665 | Msa0224560:CDS | 35.0% | |
| !!! | GAAGAGGAACAACTCTTTTT+TGG | + | chr2_1:74462706-74462725 | Msa0224560:CDS | 35.0% |
| !!! | ATGGCTGTTTTTGTTGTTGA+AGG | + | chr2_1:74462899-74462918 | Msa0224560:intron | 35.0% |
| !!! | TGGCTGTTTTTGTTGTTGAA+GGG | + | chr2_1:74462900-74462919 | Msa0224560:intron | 35.0% |
| TGTTAATGCCATGTGTATGA+TGG | + | chr2_1:74463268-74463287 | Msa0224560:intron | 35.0% | |
| CTATGAAACCATCATACACA+TGG | - | chr2_1:74463279-74463298 | None:intergenic | 35.0% | |
| CTGTTATGAAGAAAGAGTTC+AGG | + | chr2_1:74463475-74463494 | Msa0224560:CDS | 35.0% | |
| TTATGAAGAAAGAGTTCAGG+AGG | + | chr2_1:74463478-74463497 | Msa0224560:CDS | 35.0% | |
| TCCACACAAAGAACAAGAAT+CGG | - | chr2_1:74463565-74463584 | None:intergenic | 35.0% | |
| TGTTCTTTGTGTGGAATTAG+TGG | + | chr2_1:74463570-74463589 | Msa0224560:intron | 35.0% | |
| GTTGGAAAATTCTGCTAAGT+TGG | + | chr2_1:74463592-74463611 | Msa0224560:intron | 35.0% | |
| ATCTAGTCAAATCTACTGCT+AGG | + | chr2_1:74463683-74463702 | Msa0224560:intron | 35.0% | |
| ! | GTTGTTTCAGTGCATGTTAA+TGG | + | chr2_1:74463800-74463819 | Msa0224560:intron | 35.0% |
| CATGTTAATGGAAATACTGC+CGG | + | chr2_1:74463812-74463831 | Msa0224560:intron | 35.0% | |
| GTAAGAAGGATCCATTTGTT+GGG | + | chr2_1:74463991-74464010 | Msa0224560:intron | 35.0% | |
| CACTGAATAAACCCAACAAA+TGG | - | chr2_1:74464005-74464024 | None:intergenic | 35.0% | |
| ! | TGAAATTTACTTGCTACGCT+TGG | + | chr2_1:74464278-74464297 | Msa0224560:intron | 35.0% |
| !! | TTTTGTTTATTGTGCGAACC+TGG | + | chr2_1:74464406-74464425 | Msa0224560:intron | 35.0% |
| CCAGATCACCAGAAAAAAAA+GGG | - | chr2_1:74464435-74464454 | None:intergenic | 35.0% | |
| ACCAGATCACCAGAAAAAAA+AGG | - | chr2_1:74464436-74464455 | None:intergenic | 35.0% | |
| TCATTGAAGAAACCCACATA+GGG | - | chr2_1:74464569-74464588 | None:intergenic | 35.0% | |
| TTCATTGAAGAAACCCACAT+AGG | - | chr2_1:74464570-74464589 | None:intergenic | 35.0% | |
| ! | CAGAAGTTGTTTCGTGAATA+TGG | + | chr2_1:74464628-74464647 | Msa0224560:intron | 35.0% |
| TCTTCTTTATTGTGTGAACC+TGG | + | chr2_1:74464707-74464726 | Msa0224560:intron | 35.0% | |
| ! | AACCTGGTCTCTATTTTATC+TGG | + | chr2_1:74464723-74464742 | Msa0224560:intron | 35.0% |
| TAAATCGCATGGTAGCAATT+AGG | - | chr2_1:74464761-74464780 | None:intergenic | 35.0% | |
| TCATTGAAGAAACCCACATA+GGG | - | chr2_1:74464569-74464588 | None:intergenic | 35.0% | |
| TTCATTGAAGAAACCCACAT+AGG | - | chr2_1:74464570-74464589 | None:intergenic | 35.0% | |
| TTCAATCATATTAGCAGTGG+TGG | - | chr2_1:74465060-74465079 | None:intergenic | 35.0% | |
| GCATTCAATCATATTAGCAG+TGG | - | chr2_1:74465063-74465082 | None:intergenic | 35.0% | |
| TATGATTGAATGCTTCCCAT+CGG | + | chr2_1:74465070-74465089 | Msa0224560:intron | 35.0% | |
| !! | TAATTTGTTGGGCAGCATTT+GGG | - | chr2_1:74465267-74465286 | None:intergenic | 35.0% |
| !! | ATAATTTGTTGGGCAGCATT+TGG | - | chr2_1:74465268-74465287 | None:intergenic | 35.0% |
| AAGTGAATTGAGAAGAGAGT+TGG | + | chr2_1:74465558-74465577 | Msa0224560:exon | 35.0% | |
| !! | AGAACCCTATTCTAGAATAC+TGG | + | chr2_1:74465639-74465658 | Msa0224560:three_prime_UTR | 35.0% |
| !! | GAACTCCAGTATTCTAGAAT+AGG | - | chr2_1:74465647-74465666 | None:intergenic | 35.0% |
| TAGAATACTGGAGTTCAGTT+TGG | + | chr2_1:74465651-74465670 | Msa0224560:three_prime_UTR | 35.0% | |
| ! | TTGCGTTTTCAATACAAGAC+TGG | + | chr2_1:74465685-74465704 | Msa0224560:three_prime_UTR | 35.0% |
| ! | GATTAAATGGAGTATCAACC+AGG | - | chr2_1:74465843-74465862 | None:intergenic | 35.0% |
| GTTGAACAAGCCAATTTGAA+AGG | + | chr2_1:74465866-74465885 | Msa0224560:three_prime_UTR | 35.0% | |
| AGCCAATTTGAAAGGTTTGA+TGG | + | chr2_1:74465874-74465893 | Msa0224560:three_prime_UTR | 35.0% | |
| GCCAATTTGAAAGGTTTGAT+GGG | + | chr2_1:74465875-74465894 | Msa0224560:three_prime_UTR | 35.0% | |
| TCCCATCAAACCTTTCAAAT+TGG | - | chr2_1:74465879-74465898 | None:intergenic | 35.0% | |
| TAATGGAGACCAGTTTCCAT+AGG | - | chr2_1:74460957-74460976 | None:intergenic | 40.0% | |
| AAGACCATGCTAGAGTGATA+TGG | + | chr2_1:74461309-74461328 | Msa0224560:intron | 40.0% | |
| CAAACACATATAGCCCACTA+AGG | - | chr2_1:74462406-74462425 | None:intergenic | 40.0% | |
| TGTTGTTGAAGGGTTCTGTT+TGG | + | chr2_1:74462910-74462929 | Msa0224560:intron | 40.0% | |
| ACTGTAACTATTCAGTCTGC+TGG | + | chr2_1:74463378-74463397 | Msa0224560:CDS | 40.0% | |
| CAAAGATCAGTCTGTGTTGT+TGG | + | chr2_1:74463401-74463420 | Msa0224560:CDS | 40.0% | |
| CCACACAAAGAACAAGAATC+GGG | - | chr2_1:74463564-74463583 | None:intergenic | 40.0% | |
| CTTTGTGTGGAATTAGTGGT+TGG | + | chr2_1:74463574-74463593 | Msa0224560:intron | 40.0% | |
| !! | TAAAAGCATTTGGAAACGCG+TGG | + | chr2_1:74463880-74463899 | Msa0224560:intron | 40.0% |
| CGTAAGAAGGATCCATTTGT+TGG | + | chr2_1:74463990-74464009 | Msa0224560:intron | 40.0% | |
| ! | AAAGAGAGGCACGCTATTAA+CGG | - | chr2_1:74464114-74464133 | None:intergenic | 40.0% |
| ATTCAACTAGTGTTACCCAG+CGG | + | chr2_1:74464208-74464227 | Msa0224560:intron | 40.0% | |
| CACGTAAGAAGAATCCTATG+CGG | + | chr2_1:74464245-74464264 | Msa0224560:intron | 40.0% | |
| ACGTAAGAAGAATCCTATGC+GGG | + | chr2_1:74464246-74464265 | Msa0224560:intron | 40.0% | |
| !!! | CCCTTTTTTTTCTGGTGATC+TGG | + | chr2_1:74464432-74464451 | Msa0224560:intron | 40.0% |
| CACCAGATAAAATAGAGACC+AGG | - | chr2_1:74464728-74464747 | None:intergenic | 40.0% | |
| TGAGCTGTTAACACGTAAGA+AGG | + | chr2_1:74465096-74465115 | Msa0224560:intron | 40.0% | |
| AACACGTAAGAAGGTTCCTT+TGG | + | chr2_1:74465105-74465124 | Msa0224560:intron | 40.0% | |
| TCATTGAAGAAACCCACCAA+AGG | - | chr2_1:74465124-74465143 | None:intergenic | 40.0% | |
| TAGTAGTTATCTGCAACCTG+AGG | - | chr2_1:74465435-74465454 | None:intergenic | 40.0% | |
| CTACAGACCTGATCTTAAGA+AGG | + | chr2_1:74465452-74465471 | Msa0224560:CDS | 40.0% | |
| ! | CAAGGTTGAGTGCTGTTAAT+AGG | + | chr2_1:74465484-74465503 | Msa0224560:CDS | 40.0% |
| GTTAATCTAGTTAGCAGGAG+AGG | - | chr2_1:74465808-74465827 | None:intergenic | 40.0% | |
| ! | ATGGGAATCAGATGCTTTTC+CGG | + | chr2_1:74465893-74465912 | Msa0224560:three_prime_UTR | 40.0% |
| ACCTGATACTGCAATGGGAA+AGG | - | chr2_1:74460889-74460908 | None:intergenic | 45.0% | |
| TTAACCTACTGCGACTCCTA+TGG | + | chr2_1:74460938-74460957 | Msa0224560:intron | 45.0% | |
| CAAAAGGCGAAGCTAGATCA+AGG | - | chr2_1:74461079-74461098 | None:intergenic | 45.0% | |
| !! | GATCTAGCTTCGCCTTTTGA+AGG | + | chr2_1:74461080-74461099 | Msa0224560:intron | 45.0% |
| AACGCCATATCACTCTAGCA+TGG | - | chr2_1:74461316-74461335 | None:intergenic | 45.0% | |
| AGCACTGTGACATATTAGGG+CGG | - | chr2_1:74461432-74461451 | None:intergenic | 45.0% | |
| ! | TAAGGAGTCTGGTTCGTTTG+AGG | + | chr2_1:74461626-74461645 | Msa0224560:intron | 45.0% |
| CAGAATCTTACATGCCGTGT+CGG | + | chr2_1:74462376-74462395 | Msa0224560:intron | 45.0% | |
| AGAATCTTACATGCCGTGTC+GGG | + | chr2_1:74462377-74462396 | Msa0224560:intron | 45.0% | |
| ! | GTTTGAAGCCCAAAATCCAG+CGG | + | chr2_1:74462421-74462440 | Msa0224560:intron | 45.0% |
| ! | GATTTGGACCGCTGGATTTT+GGG | - | chr2_1:74462432-74462451 | None:intergenic | 45.0% |
| CTCTCCTCAACAACAATCCA+AGG | + | chr2_1:74462527-74462546 | Msa0224560:intron | 45.0% | |
| AAGAAGATGGCAACAGTACC+TGG | + | chr2_1:74462662-74462681 | Msa0224560:CDS | 45.0% | |
| AGTACCTGGACCACTTGTTT+GGG | + | chr2_1:74462676-74462695 | Msa0224560:CDS | 45.0% | |
| TTCACGATCTCCCAAACAAG+TGG | - | chr2_1:74462689-74462708 | None:intergenic | 45.0% | |
| TTGTTTGGGAGATCGTGAAG+AGG | + | chr2_1:74462690-74462709 | Msa0224560:CDS | 45.0% | |
| !!! | CTTGTTTTGCTTCCTTGGCT+TGG | - | chr2_1:74463433-74463452 | None:intergenic | 45.0% |
| GATTTGTGAAGCAAAGCAGC+AGG | - | chr2_1:74463456-74463475 | None:intergenic | 45.0% | |
| GAAGAAAGAGTTCAGGAGGA+TGG | + | chr2_1:74463482-74463501 | Msa0224560:CDS | 45.0% | |
| CCCGATTCTTGTTCTTTGTG+TGG | + | chr2_1:74463561-74463580 | Msa0224560:intron | 45.0% | |
| TGAGCCTCTAACACGTAAGA+AGG | + | chr2_1:74463977-74463996 | Msa0224560:intron | 45.0% | |
| GGATCCTTCTTACGTGTTAG+AGG | - | chr2_1:74463984-74464003 | None:intergenic | 45.0% | |
| GTTAATAGCTCATCACCGCT+GGG | - | chr2_1:74464226-74464245 | None:intergenic | 45.0% | |
| TGTTAATAGCTCATCACCGC+TGG | - | chr2_1:74464227-74464246 | None:intergenic | 45.0% | |
| TTCATTGAAGAAGCCCGCAT+AGG | - | chr2_1:74464262-74464281 | None:intergenic | 45.0% | |
| CCAGAAAAAAAAGGGATGCC+AGG | - | chr2_1:74464427-74464446 | None:intergenic | 45.0% | |
| !!! | CCTGGCATCCCTTTTTTTTC+TGG | + | chr2_1:74464424-74464443 | Msa0224560:intron | 45.0% |
| ACACCAAATCTAACTGGCAG+AGG | - | chr2_1:74464508-74464527 | None:intergenic | 45.0% | |
| TGGGGAACACCAAATCTAAC+TGG | - | chr2_1:74464514-74464533 | None:intergenic | 45.0% | |
| ACGTAAGAAGGTTCCTTTGG+TGG | + | chr2_1:74465108-74465127 | Msa0224560:intron | 45.0% | |
| CGTAAGAAGGTTCCTTTGGT+GGG | + | chr2_1:74465109-74465128 | Msa0224560:intron | 45.0% | |
| CAGACCTGATCTTAAGAAGG+TGG | + | chr2_1:74465455-74465474 | Msa0224560:CDS | 45.0% | |
| AGAGCCACCTTCTTAAGATC+AGG | - | chr2_1:74465462-74465481 | None:intergenic | 45.0% | |
| TTAAGAAGGTGGCTCTTGCA+AGG | + | chr2_1:74465466-74465485 | Msa0224560:CDS | 45.0% | |
| AAGAAGAGAAACAGGCATGC+AGG | + | chr2_1:74465534-74465553 | Msa0224560:CDS | 45.0% | |
| !!! | AAGTTTATAATTTTTTTTTA+AGG | - | chr2_1:74461826-74461845 | None:intergenic | 5.0% |
| GCCTTTCCCATTGCAGTATC+AGG | + | chr2_1:74460885-74460904 | Msa0224560:CDS | 50.0% | |
| GTTTCCATAGGAGTCGCAGT+AGG | - | chr2_1:74460945-74460964 | None:intergenic | 50.0% | |
| ACTGCGACTCCTATGGAAAC+TGG | + | chr2_1:74460945-74460964 | Msa0224560:intron | 50.0% | |
| ! | GGATTTGGACCGCTGGATTT+TGG | - | chr2_1:74462433-74462452 | None:intergenic | 50.0% |
| ! | TTGCTTTGGATTTGGACCGC+TGG | - | chr2_1:74462440-74462459 | None:intergenic | 50.0% |
| CAGTACCTGGACCACTTGTT+TGG | + | chr2_1:74462675-74462694 | Msa0224560:CDS | 50.0% | |
| ATCTCCCAAACAAGTGGTCC+AGG | - | chr2_1:74462683-74462702 | None:intergenic | 50.0% | |
| !!! | GTTTTGCTTCCTTGGCTTGG+TGG | - | chr2_1:74463430-74463449 | None:intergenic | 50.0% |
| !!! | GCAGGCTTGTTTTGCTTCCT+TGG | - | chr2_1:74463438-74463457 | None:intergenic | 50.0% |
| AGAGTTCAGGAGGATGGCTA+AGG | + | chr2_1:74463488-74463507 | Msa0224560:CDS | 50.0% | |
| GGCTAAGGCTGTGCAAAATC+AGG | + | chr2_1:74463503-74463522 | Msa0224560:CDS | 50.0% | |
| GTTAGAGGCTCATCACAGCA+AGG | - | chr2_1:74463969-74463988 | None:intergenic | 50.0% | |
| TGCAGGCAAAGGAGATCAGA+AGG | - | chr2_1:74464091-74464110 | None:intergenic | 50.0% | |
| GCTATTAACGGTGCAGGCAA+AGG | - | chr2_1:74464102-74464121 | None:intergenic | 50.0% | |
| GCACCTCTGCCAGTTAGATT+TGG | + | chr2_1:74464502-74464521 | Msa0224560:intron | 50.0% | |
| TTAGAGGCTCATCACTGCTG+GGG | - | chr2_1:74464532-74464551 | None:intergenic | 50.0% | |
| GTTAGAGGCTCATCACTGCT+GGG | - | chr2_1:74464533-74464552 | None:intergenic | 50.0% | |
| TGTTAGAGGCTCATCACTGC+TGG | - | chr2_1:74464534-74464553 | None:intergenic | 50.0% | |
| ATCACTGCTGGGGTCCATAT+AGG | - | chr2_1:74464810-74464829 | None:intergenic | 50.0% | |
| TTAACGGCTCATCACTGCTG+GGG | - | chr2_1:74464820-74464839 | None:intergenic | 50.0% | |
| GTTAACGGCTCATCACTGCT+GGG | - | chr2_1:74464821-74464840 | None:intergenic | 50.0% | |
| TGTTAACGGCTCATCACTGC+TGG | - | chr2_1:74464822-74464841 | None:intergenic | 50.0% | |
| TGAGGGGAGCAGATATGTCT+TGG | + | chr2_1:74464972-74464991 | Msa0224560:intron | 50.0% | |
| GTTAACAGCTCATCGCCGAT+GGG | - | chr2_1:74465088-74465107 | None:intergenic | 50.0% | |
| TGTTAACAGCTCATCGCCGA+TGG | - | chr2_1:74465089-74465108 | None:intergenic | 50.0% | |
| TAGCGCCAGACTTTGCAACT+CGG | - | chr2_1:74465515-74465534 | None:intergenic | 50.0% | |
| CTGGCGCTAAGAAGAGAAAC+AGG | + | chr2_1:74465526-74465545 | Msa0224560:CDS | 50.0% | |
| CCCACTAAGGTAACCCGACA+CGG | - | chr2_1:74462393-74462412 | None:intergenic | 55.0% | |
| CCGTGTCGGGTTACCTTAGT+GGG | + | chr2_1:74462390-74462409 | Msa0224560:intron | 55.0% | |
| TGTTGGCAACCACCAAGCCA+AGG | + | chr2_1:74463418-74463437 | Msa0224560:CDS | 55.0% | |
| AGGCACGCTATTAACGGTGC+AGG | - | chr2_1:74464108-74464127 | None:intergenic | 55.0% | |
| TTGCGTGTGTGATGTGCCTC+AGG | + | chr2_1:74465416-74465435 | Msa0224560:intron | 55.0% | |
| AGCCTCCGAGTTGCAAAGTC+TGG | + | chr2_1:74465507-74465526 | Msa0224560:CDS | 55.0% | |
| GCCGTGTCGGGTTACCTTAG+TGG | + | chr2_1:74462389-74462408 | Msa0224560:intron | 60.0% | |
| CGCCAGACTTTGCAACTCGG+AGG | - | chr2_1:74465512-74465531 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 74460845 | 74465944 | 74460845 | ID=Msa0224560;Name=Msa0224560 |
| chr2_1 | mRNA | 74460845 | 74465944 | 74460845 | ID=Msa0224560-mRNA-1;Parent=Msa0224560;Name=Msa0224560-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.66|0.75|0.75|1|0.75|4|381|174 |
| chr2_1 | exon | 74460845 | 74460906 | 74460845 | ID=Msa0224560-mRNA-1:exon:22037;Parent=Msa0224560-mRNA-1 |
| chr2_1 | exon | 74462643 | 74462815 | 74462643 | ID=Msa0224560-mRNA-1:exon:22038;Parent=Msa0224560-mRNA-1 |
| chr2_1 | exon | 74463361 | 74463524 | 74463361 | ID=Msa0224560-mRNA-1:exon:22039;Parent=Msa0224560-mRNA-1 |
| chr2_1 | exon | 74465438 | 74465944 | 74465438 | ID=Msa0224560-mRNA-1:exon:22040;Parent=Msa0224560-mRNA-1 |
| chr2_1 | CDS | 74460845 | 74460906 | 74460845 | ID=Msa0224560-mRNA-1:cds;Parent=Msa0224560-mRNA-1 |
| chr2_1 | CDS | 74462643 | 74462815 | 74462643 | ID=Msa0224560-mRNA-1:cds;Parent=Msa0224560-mRNA-1 |
| chr2_1 | CDS | 74463361 | 74463524 | 74463361 | ID=Msa0224560-mRNA-1:cds;Parent=Msa0224560-mRNA-1 |
| chr2_1 | CDS | 74465438 | 74465563 | 74465438 | ID=Msa0224560-mRNA-1:cds;Parent=Msa0224560-mRNA-1 |
| chr2_1 | three_prime_UTR | 74465564 | 74465944 | 74465564 | ID=Msa0224560-mRNA-1:three_prime_utr;Parent=Msa0224560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
