Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1156420 | XP_003624235.1 | 94.048 | 336 | 17 | 3 | 1 | 334 | 1 | 335 | 0.0 | 599 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1156420 | sp|Q9T072|BH025_ARATH | 39.013 | 223 | 115 | 6 | 118 | 326 | 109 | 324 | 3.15e-35 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1156420 | G7KSG4 | 94.048 | 336 | 17 | 3 | 1 | 334 | 1 | 335 | 0.0 | 599 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1156420 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1029420 | Msa1156420 | 0.957441 | 2.692298e-115 | -8.615850e-47 |
| Msa1033660 | Msa1156420 | 0.801889 | 7.277285e-49 | -8.615850e-47 |
| Msa1068280 | Msa1156420 | 0.946903 | 1.894458e-105 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1156420 | MtrunA17_Chr7g0249811 | 94.048 | 336 | 17 | 3 | 1 | 334 | 1 | 335 | 0.0 | 599 |
| Msa1156420 | MtrunA17_Chr8g0336681 | 45.528 | 246 | 104 | 5 | 115 | 332 | 97 | 340 | 1.14e-56 | 187 |
| Msa1156420 | MtrunA17_Chr4g0002801 | 36.986 | 365 | 159 | 11 | 1 | 328 | 1 | 331 | 3.53e-52 | 175 |
| Msa1156420 | MtrunA17_Chr2g0333641 | 36.182 | 351 | 154 | 9 | 1 | 326 | 1 | 306 | 5.17e-52 | 174 |
| Msa1156420 | MtrunA17_Chr2g0333621 | 36.901 | 355 | 152 | 10 | 1 | 327 | 1 | 311 | 3.24e-51 | 172 |
| Msa1156420 | MtrunA17_Chr4g0002781 | 35.121 | 373 | 174 | 11 | 1 | 328 | 1 | 350 | 2.64e-49 | 168 |
| Msa1156420 | MtrunA17_Chr5g0400661 | 35.461 | 282 | 133 | 5 | 95 | 327 | 53 | 334 | 7.44e-43 | 150 |
| Msa1156420 | MtrunA17_Chr5g0400621 | 42.408 | 191 | 101 | 1 | 148 | 329 | 141 | 331 | 5.05e-41 | 146 |
| Msa1156420 | MtrunA17_Chr4g0054561 | 45.251 | 179 | 91 | 2 | 155 | 326 | 146 | 324 | 2.07e-40 | 144 |
| Msa1156420 | MtrunA17_Chr4g0049331 | 40.164 | 244 | 123 | 6 | 101 | 323 | 62 | 303 | 4.30e-40 | 143 |
| Msa1156420 | MtrunA17_Chr2g0333611 | 43.548 | 186 | 97 | 3 | 153 | 331 | 35 | 219 | 2.48e-39 | 138 |
| Msa1156420 | MtrunA17_Chr5g0400671 | 41.243 | 177 | 98 | 1 | 157 | 327 | 147 | 323 | 1.55e-38 | 139 |
| Msa1156420 | MtrunA17_Chr4g0054551 | 43.575 | 179 | 94 | 2 | 155 | 326 | 146 | 324 | 4.72e-38 | 138 |
| Msa1156420 | MtrunA17_Chr6g0468491 | 42.857 | 182 | 94 | 3 | 152 | 323 | 124 | 305 | 3.80e-37 | 135 |
| Msa1156420 | MtrunA17_Chr2g0307131 | 41.176 | 187 | 100 | 2 | 152 | 328 | 166 | 352 | 6.19e-37 | 135 |
| Msa1156420 | MtrunA17_Chr4g0054581 | 38.579 | 197 | 106 | 2 | 152 | 334 | 186 | 381 | 2.05e-36 | 135 |
| Msa1156420 | MtrunA17_Chr2g0307141 | 41.111 | 180 | 97 | 1 | 163 | 333 | 182 | 361 | 6.09e-36 | 133 |
| Msa1156420 | MtrunA17_Chr4g0033391 | 36.792 | 212 | 110 | 4 | 127 | 328 | 120 | 317 | 6.89e-35 | 129 |
| Msa1156420 | MtrunA17_Chr7g0225901 | 38.710 | 186 | 98 | 4 | 132 | 308 | 63 | 241 | 3.22e-34 | 126 |
| Msa1156420 | MtrunA17_Chr4g0033291 | 34.118 | 255 | 152 | 5 | 90 | 328 | 71 | 325 | 4.06e-34 | 127 |
| Msa1156420 | MtrunA17_Chr2g0280161 | 42.442 | 172 | 89 | 2 | 162 | 323 | 175 | 346 | 5.81e-33 | 125 |
| Msa1156420 | MtrunA17_Chr2g0333541 | 44.565 | 184 | 88 | 3 | 152 | 323 | 83 | 264 | 5.91e-33 | 123 |
| Msa1156420 | MtrunA17_Chr4g0033281 | 35.071 | 211 | 125 | 4 | 132 | 330 | 118 | 328 | 8.05e-31 | 119 |
| Msa1156420 | MtrunA17_Chr4g0054621 | 30.000 | 260 | 164 | 5 | 82 | 328 | 84 | 338 | 5.84e-30 | 117 |
| Msa1156420 | MtrunA17_Chr4g0054571 | 35.950 | 242 | 123 | 7 | 117 | 328 | 91 | 330 | 2.42e-29 | 115 |
| Msa1156420 | MtrunA17_Chr5g0400641 | 40.667 | 150 | 80 | 1 | 167 | 307 | 1 | 150 | 6.50e-29 | 109 |
| Msa1156420 | MtrunA17_Chr6g0468461 | 37.037 | 162 | 96 | 2 | 146 | 307 | 156 | 311 | 9.05e-26 | 105 |
| Msa1156420 | MtrunA17_Chr4g0002851 | 38.000 | 150 | 83 | 3 | 174 | 323 | 53 | 192 | 9.92e-23 | 94.0 |
| Msa1156420 | MtrunA17_Chr7g0233441 | 37.143 | 140 | 81 | 2 | 187 | 323 | 57 | 192 | 2.67e-22 | 92.8 |
| Msa1156420 | MtrunA17_Chr4g0002831 | 37.748 | 151 | 91 | 3 | 174 | 323 | 52 | 200 | 2.29e-20 | 87.8 |
| Msa1156420 | MtrunA17_Chr8g0336671 | 64.000 | 50 | 17 | 1 | 148 | 197 | 20 | 68 | 1.80e-13 | 65.1 |
| Msa1156420 | MtrunA17_Chr8g0346161 | 25.500 | 200 | 127 | 6 | 134 | 313 | 256 | 453 | 2.54e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1156420 | AT4G37850.2 | 39.013 | 223 | 115 | 6 | 118 | 326 | 109 | 324 | 3.20e-36 | 133 |
| Msa1156420 | AT4G37850.1 | 39.013 | 223 | 115 | 6 | 118 | 326 | 109 | 324 | 3.20e-36 | 133 |
| Msa1156420 | AT2G22770.1 | 40.609 | 197 | 93 | 2 | 156 | 328 | 124 | 320 | 8.85e-36 | 132 |
| Msa1156420 | AT2G22750.2 | 38.636 | 264 | 117 | 7 | 73 | 322 | 65 | 297 | 1.35e-32 | 123 |
| Msa1156420 | AT2G22750.5 | 38.636 | 264 | 117 | 7 | 73 | 322 | 89 | 321 | 2.40e-32 | 123 |
| Msa1156420 | AT2G22750.3 | 38.636 | 264 | 117 | 7 | 73 | 322 | 93 | 325 | 2.59e-32 | 123 |
| Msa1156420 | AT2G22760.1 | 40.556 | 180 | 94 | 3 | 157 | 323 | 112 | 291 | 3.11e-32 | 122 |
| Msa1156420 | AT2G22750.1 | 39.015 | 264 | 115 | 8 | 73 | 322 | 65 | 296 | 8.61e-32 | 121 |
| Msa1156420 | AT2G22750.4 | 39.015 | 264 | 115 | 8 | 73 | 322 | 93 | 324 | 1.27e-31 | 121 |
| Msa1156420 | AT2G22760.2 | 38.650 | 163 | 88 | 2 | 157 | 307 | 112 | 274 | 6.53e-27 | 107 |
| Msa1156420 | AT4G09820.1 | 31.452 | 124 | 74 | 2 | 165 | 288 | 364 | 476 | 2.23e-14 | 74.3 |
| Msa1156420 | AT5G57150.1 | 28.485 | 165 | 99 | 5 | 165 | 311 | 55 | 218 | 2.22e-12 | 66.6 |
| Msa1156420 | AT5G57150.5 | 28.758 | 153 | 91 | 4 | 165 | 299 | 55 | 207 | 2.57e-12 | 65.9 |
| Msa1156420 | AT5G57150.2 | 28.758 | 153 | 91 | 4 | 165 | 299 | 56 | 208 | 2.74e-12 | 65.9 |
| Msa1156420 | AT5G57150.3 | 28.758 | 153 | 91 | 4 | 165 | 299 | 56 | 208 | 2.92e-12 | 65.9 |
| Msa1156420 | AT5G46760.1 | 22.881 | 236 | 154 | 4 | 75 | 291 | 329 | 555 | 8.37e-12 | 66.6 |
| Msa1156420 | AT5G57150.4 | 27.215 | 158 | 87 | 4 | 165 | 299 | 56 | 208 | 1.21e-11 | 64.7 |
| Msa1156420 | AT4G29930.2 | 25.490 | 153 | 112 | 2 | 165 | 316 | 55 | 206 | 2.97e-11 | 62.8 |
Find 79 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGAATTTGATTTCTTATA+TGG | 0.194480 | 7_4:+44704145 | Msa1156420:CDS |
| TAATATTGTTGGTAAGAATT+TGG | 0.200458 | 7_4:+44706998 | Msa1156420:three_prime_UTR |
| CCCAATTGTAATTATAATAA+TGG | 0.245776 | 7_4:+44706811 | Msa1156420:three_prime_UTR |
| CAGGGCCGTTCCTGCGAATA+TGG | 0.256571 | 7_4:+44707105 | Msa1156420:three_prime_UTR |
| GCCACATACCTTCTATCTTT+TGG | 0.267929 | 7_4:+44704574 | Msa1156420:CDS |
| CTCCAACTCAATCAAGTCTT+TGG | 0.295695 | 7_4:+44704528 | Msa1156420:CDS |
| CCATTTCTACTTTGTTTGAT+TGG | 0.302876 | 7_4:+44706854 | Msa1156420:three_prime_UTR |
| TCAAAAGCGCATTAAAGAAT+TGG | 0.305540 | 7_4:+44705595 | Msa1156420:CDS |
| TATTCAAAAGGGTCACTTTA+GGG | 0.305647 | 7_4:+44704088 | Msa1156420:five_prime_UTR |
| ATATTCAAAAGGGTCACTTT+AGG | 0.307799 | 7_4:+44704087 | Msa1156420:five_prime_UTR |
| TCCATTATTATAATTACAAT+TGG | 0.314162 | 7_4:-44706812 | None:intergenic |
| GATTTCCACTTGAATATTGC+TGG | 0.322703 | 7_4:-44705647 | None:intergenic |
| CATGATACCTGGCTTGAAAA+AGG | 0.331924 | 7_4:+44704780 | Msa1156420:CDS |
| GAAGAGGGTTCACATGATTC+TGG | 0.333045 | 7_4:-44704346 | None:intergenic |
| CCATTATTATAATTACAATT+GGG | 0.354808 | 7_4:-44706811 | None:intergenic |
| CTGCTAGTGCATCAAAATAA+AGG | 0.360206 | 7_4:+44706783 | Msa1156420:three_prime_UTR |
| TTCAAGAGATGTAATATTGT+TGG | 0.361341 | 7_4:+44706987 | Msa1156420:three_prime_UTR |
| GAGTATATTCAAATCGCATC+TGG | 0.373851 | 7_4:+44707036 | Msa1156420:three_prime_UTR |
| GACAGTACAAGATCACTTAA+TGG | 0.377290 | 7_4:+44704705 | Msa1156420:CDS |
| TGTGACATTGGTTCAATGAT+TGG | 0.382838 | 7_4:-44704613 | None:intergenic |
| AGTTGTTGTACTATTGCCTT+GGG | 0.387217 | 7_4:-44704389 | None:intergenic |
| CACATGATTCTGGTTCTTCA+AGG | 0.387684 | 7_4:-44704336 | None:intergenic |
| CCAATCAAACAAAGTAGAAA+TGG | 0.406606 | 7_4:-44706854 | None:intergenic |
| AAATCTGAGAAAATATCTAT+TGG | 0.423346 | 7_4:+44706734 | Msa1156420:CDS |
| TGTAATCAACATTTGTGCTC+AGG | 0.432810 | 7_4:+44705865 | Msa1156420:CDS |
| TAGTTGTTGTACTATTGCCT+TGG | 0.441021 | 7_4:-44704390 | None:intergenic |
| TTGAGTTACCAAAAGATAGA+AGG | 0.445013 | 7_4:-44704582 | None:intergenic |
| ATAATGGAATGAGGATGTAT+TGG | 0.445940 | 7_4:+44706827 | Msa1156420:three_prime_UTR |
| AAGCAACAAAGAAGGTTAGA+AGG | 0.446951 | 7_4:+44704674 | Msa1156420:CDS |
| TGGCTGAGAGGAAGAGGAGA+AGG | 0.451096 | 7_4:+44704725 | Msa1156420:CDS |
| CTATACCAGTCATATTCAAA+AGG | 0.451600 | 7_4:+44704076 | Msa1156420:five_prime_UTR |
| GCACTTTCAGCCATGATACC+TGG | 0.455730 | 7_4:+44704769 | Msa1156420:CDS |
| TTCCAAAGACTTGATTGAGT+TGG | 0.458779 | 7_4:-44704530 | None:intergenic |
| CTCTCTTCAATTTGCAACAA+TGG | 0.461302 | 7_4:+44704112 | Msa1156420:exon |
| AAAGGACAAAATACTATTTG+TGG | 0.476362 | 7_4:-44704443 | None:intergenic |
| TGCAACAATGGAGGATTCAC+TGG | 0.488783 | 7_4:+44704124 | Msa1156420:exon |
| AAGGACAAAATACTATTTGT+GGG | 0.492056 | 7_4:-44704442 | None:intergenic |
| GGCTGAGAGGAAGAGGAGAA+GGG | 0.495214 | 7_4:+44704726 | Msa1156420:CDS |
| TGAAGCTAGAGTCAAAGAAA+AGG | 0.495694 | 7_4:+44705718 | Msa1156420:CDS |
| ATGACTGGTATAGAGTAGTT+AGG | 0.495751 | 7_4:-44704066 | None:intergenic |
| ACTTAATGGCTGAGAGGAAG+AGG | 0.503095 | 7_4:+44704719 | Msa1156420:CDS |
| ACAACATGGTTATTAATCAC+AGG | 0.508793 | 7_4:+44707086 | Msa1156420:three_prime_UTR |
| ACAACTATAATAAATGTTGA+AGG | 0.516555 | 7_4:+44704406 | Msa1156420:CDS |
| TCTGAGAAAATATCTATTGG+AGG | 0.519320 | 7_4:+44706737 | Msa1156420:CDS |
| CTTTGTTCCAATAAAACCCA+AGG | 0.520956 | 7_4:+44704373 | Msa1156420:CDS |
| CATTATTATAATTACAATTG+GGG | 0.527627 | 7_4:-44706810 | None:intergenic |
| AATCTCAAGCAGTGATTCTG+AGG | 0.530393 | 7_4:-44705696 | None:intergenic |
| AATTCATTGTGAGAAGCAAA+AGG | 0.532564 | 7_4:+44705754 | Msa1156420:CDS |
| AAAGATAGAAGGTATGTGGC+TGG | 0.543699 | 7_4:-44704571 | None:intergenic |
| ATTGGAACAAAGATAAGAAG+AGG | 0.546112 | 7_4:-44704362 | None:intergenic |
| AGTGAAGGAAGCAACAAAGA+AGG | 0.546734 | 7_4:+44704666 | Msa1156420:CDS |
| TATACCAGTCATATTCAAAA+GGG | 0.555111 | 7_4:+44704077 | Msa1156420:five_prime_UTR |
| AACCGAGCCTCCATATTCGC+AGG | 0.555589 | 7_4:-44707115 | None:intergenic |
| TTCCTGCGAATATGGAGGCT+CGG | 0.557828 | 7_4:+44707113 | Msa1156420:three_prime_UTR |
| TGAAGAAGACAGCATGGCCA+TGG | 0.560524 | 7_4:+44706698 | Msa1156420:CDS |
| GACAGATGAAGCAAGAGTGA+AGG | 0.560915 | 7_4:+44704651 | Msa1156420:CDS |
| AGCCTCCATATTCGCAGGAA+CGG | 0.565306 | 7_4:-44707110 | None:intergenic |
| TGTCACATAAAACTAAAAGA+AGG | 0.567489 | 7_4:+44704629 | Msa1156420:CDS |
| AGTAGTAGCATGTTACCATT+CGG | 0.568567 | 7_4:+44705830 | Msa1156420:CDS |
| ATTCAAAAGGGTCACTTTAG+GGG | 0.568631 | 7_4:+44704089 | Msa1156420:five_prime_UTR |
| ACCAAAAGATAGAAGGTATG+TGG | 0.570819 | 7_4:-44704575 | None:intergenic |
| TTGCTCATCAAATGTGGTGG+TGG | 0.571745 | 7_4:-44704293 | None:intergenic |
| AATTTGGCTTTGTAAACGCA+TGG | 0.572879 | 7_4:+44707014 | Msa1156420:three_prime_UTR |
| GTAATTATAATAATGGAATG+AGG | 0.575299 | 7_4:+44706818 | Msa1156420:three_prime_UTR |
| CAAATCCAGCAATATTCAAG+TGG | 0.578490 | 7_4:+44705642 | Msa1156420:CDS |
| AAATAAACTTGTCTCATCAA+AGG | 0.579876 | 7_4:-44704461 | None:intergenic |
| TCTTCAATTTGCAACAATGG+AGG | 0.581385 | 7_4:+44704115 | Msa1156420:exon |
| AGTATATTCAAATCGCATCT+GGG | 0.598233 | 7_4:+44707037 | Msa1156420:three_prime_UTR |
| TTGGAACAAAGATAAGAAGA+GGG | 0.598491 | 7_4:-44704361 | None:intergenic |
| CATGGCCATGGATGACCTTG+TGG | 0.614537 | 7_4:+44706710 | Msa1156420:CDS |
| CTCTTGCTCATCAAATGTGG+TGG | 0.624271 | 7_4:-44704296 | None:intergenic |
| CAACATGGTTATTAATCACA+GGG | 0.626451 | 7_4:+44707087 | Msa1156420:three_prime_UTR |
| AAACTCTTGCTCATCAAATG+TGG | 0.646764 | 7_4:-44704299 | None:intergenic |
| GATGGATGAAGAAGACAGCA+TGG | 0.648869 | 7_4:+44706692 | Msa1156420:intron |
| GGCCGTTCCTGCGAATATGG+AGG | 0.653168 | 7_4:+44707108 | Msa1156420:three_prime_UTR |
| ACAAGAATAGAAGCACCGAA+TGG | 0.665943 | 7_4:-44705845 | None:intergenic |
| AAGATCACTTAATGGCTGAG+AGG | 0.675984 | 7_4:+44704713 | Msa1156420:CDS |
| TGACTATTAACAAAACAACA+TGG | 0.718867 | 7_4:+44707072 | Msa1156420:three_prime_UTR |
| TCGGTTCTAGAAGTGAAACG+AGG | 0.789263 | 7_4:+44707132 | Msa1156420:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATATTTAAAAAAATT+AGG | + | chr7_4:44704948-44704967 | Msa1156420:intron | 0.0% |
| !!! | TTATATCATTATTTGTTAAT+TGG | + | chr7_4:44704211-44704230 | Msa1156420:intron | 10.0% |
| !!! | AAGAAAAAAAAGTTTTATAA+TGG | - | chr7_4:44705920-44705939 | None:intergenic | 10.0% |
| !!! | TAATTAATTATTTTATGCAA+GGG | - | chr7_4:44706016-44706035 | None:intergenic | 10.0% |
| !!! | ATAATTAATTATTTTATGCA+AGG | - | chr7_4:44706017-44706036 | None:intergenic | 10.0% |
| !!! | TAAATATACTTTTTTAAAAG+TGG | - | chr7_4:44706525-44706544 | None:intergenic | 10.0% |
| !!! | TTTTTTTTATCTTTGATCAT+AGG | + | chr7_4:44704240-44704259 | Msa1156420:intron | 15.0% |
| !! | TATATAAATTTGTACGATAA+TGG | - | chr7_4:44704890-44704909 | None:intergenic | 15.0% |
| !! | GAAATGATTAATATCTTATT+GGG | - | chr7_4:44706089-44706108 | None:intergenic | 15.0% |
| !! | TGAAATGATTAATATCTTAT+TGG | - | chr7_4:44706090-44706109 | None:intergenic | 15.0% |
| !!! | TTGAAAGTATTTTTCATTTT+GGG | - | chr7_4:44706187-44706206 | None:intergenic | 15.0% |
| !!! | ATTGAAAGTATTTTTCATTT+TGG | - | chr7_4:44706188-44706207 | None:intergenic | 15.0% |
| !! | ATTATTCTTATCAATTATCT+GGG | - | chr7_4:44706322-44706341 | None:intergenic | 15.0% |
| !! | AATTATTCTTATCAATTATC+TGG | - | chr7_4:44706323-44706342 | None:intergenic | 15.0% |
| !!! | ATAAATCAATCATTTTAGAA+CGG | + | chr7_4:44706392-44706411 | Msa1156420:intron | 15.0% |
| !!! | TTTTAACAAATCTTTGTTAT+TGG | + | chr7_4:44706498-44706517 | Msa1156420:intron | 15.0% |
| !! | AAAAAAATCAAAAAGAGTAA+AGG | + | chr7_4:44706585-44706604 | Msa1156420:intron | 15.0% |
| !! | CATTATTATAATTACAATTG+GGG | - | chr7_4:44706813-44706832 | None:intergenic | 15.0% |
| !! | CCATTATTATAATTACAATT+GGG | - | chr7_4:44706814-44706833 | None:intergenic | 15.0% |
| !! | TCCATTATTATAATTACAAT+TGG | - | chr7_4:44706815-44706834 | None:intergenic | 15.0% |
| !! | ACAACTATAATAAATGTTGA+AGG | + | chr7_4:44704406-44704425 | Msa1156420:CDS | 20.0% |
| !! | GTTTAATGCTGTATTATTAT+CGG | + | chr7_4:44705398-44705417 | Msa1156420:intron | 20.0% |
| !! | CTCGTATAATTGAATATTAA+AGG | + | chr7_4:44705475-44705494 | Msa1156420:intron | 20.0% |
| !! | ATTACAATATAAAGTCAGAT+GGG | - | chr7_4:44705508-44705527 | None:intergenic | 20.0% |
| !! | AATTACAATATAAAGTCAGA+TGG | - | chr7_4:44705509-44705528 | None:intergenic | 20.0% |
| !! | ATTTCTCTAATTACTATAGA+TGG | + | chr7_4:44705526-44705545 | Msa1156420:intron | 20.0% |
| !!! | ACTTTTTAAGATGAATAAGT+AGG | + | chr7_4:44705968-44705987 | Msa1156420:intron | 20.0% |
| !!! | CTTTTTAAGATGAATAAGTA+GGG | + | chr7_4:44705969-44705988 | Msa1156420:intron | 20.0% |
| !! | ATTAATATCTTATTGGGTTA+AGG | - | chr7_4:44706083-44706102 | None:intergenic | 20.0% |
| !!! | ACATTTTTATTTGTGTGAAA+TGG | + | chr7_4:44706365-44706384 | Msa1156420:intron | 20.0% |
| !! | AAATCTGAGAAAATATCTAT+TGG | + | chr7_4:44706734-44706753 | Msa1156420:CDS | 20.0% |
| !! | CCCAATTGTAATTATAATAA+TGG | + | chr7_4:44706811-44706830 | Msa1156420:three_prime_UTR | 20.0% |
| !!! | GTAATTATAATAATGGAATG+AGG | + | chr7_4:44706818-44706837 | Msa1156420:three_prime_UTR | 20.0% |
| !!! | TAATATTGTTGGTAAGAATT+TGG | + | chr7_4:44706998-44707017 | Msa1156420:three_prime_UTR | 20.0% |
| ! | TATACCAGTCATATTCAAAA+GGG | + | chr7_4:44704077-44704096 | Msa1156420:five_prime_UTR | 25.0% |
| !! | GGAGAATTTGATTTCTTATA+TGG | + | chr7_4:44704145-44704164 | Msa1156420:CDS | 25.0% |
| ! | TTATCTTTGATCATAGGAAA+TGG | + | chr7_4:44704246-44704265 | Msa1156420:intron | 25.0% |
| ! | AAGGACAAAATACTATTTGT+GGG | - | chr7_4:44704445-44704464 | None:intergenic | 25.0% |
| ! | AAAGGACAAAATACTATTTG+TGG | - | chr7_4:44704446-44704465 | None:intergenic | 25.0% |
| ! | AAATAAACTTGTCTCATCAA+AGG | - | chr7_4:44704464-44704483 | None:intergenic | 25.0% |
| !!! | CTTTTAGTTTTATGTGACAT+TGG | - | chr7_4:44704628-44704647 | None:intergenic | 25.0% |
| ! | TGTCACATAAAACTAAAAGA+AGG | + | chr7_4:44704629-44704648 | Msa1156420:CDS | 25.0% |
| ! | AAATTATCTTGAGCTTAAAC+TGG | + | chr7_4:44705147-44705166 | Msa1156420:intron | 25.0% |
| ! | AATTATCTTGAGCTTAAACT+GGG | + | chr7_4:44705148-44705167 | Msa1156420:intron | 25.0% |
| !! | TAAAAGTCAATGAAAAGCAT+AGG | - | chr7_4:44705346-44705365 | None:intergenic | 25.0% |
| !!! | GACAACTTTTTTCTTCAAAT+AGG | - | chr7_4:44706165-44706184 | None:intergenic | 25.0% |
| ! | TATATTGATAAACCTCATTG+TGG | + | chr7_4:44706424-44706443 | Msa1156420:intron | 25.0% |
| !! | AACATTTACATAACCCATTT+TGG | - | chr7_4:44706465-44706484 | None:intergenic | 25.0% |
| !!! | AAAATGGGTTATGTAAATGT+TGG | + | chr7_4:44706464-44706483 | Msa1156420:intron | 25.0% |
| !! | TGATCTCTAATTTGTAATGT+TGG | + | chr7_4:44706631-44706650 | Msa1156420:intron | 25.0% |
| !! | GATCTCTAATTTGTAATGTT+GGG | + | chr7_4:44706632-44706651 | Msa1156420:intron | 25.0% |
| ! | TTTGTCACATTGAAGAAAAA+AGG | + | chr7_4:44706889-44706908 | Msa1156420:three_prime_UTR | 25.0% |
| ! | TTCAAGAGATGTAATATTGT+TGG | + | chr7_4:44706987-44707006 | Msa1156420:three_prime_UTR | 25.0% |
| ! | TGACTATTAACAAAACAACA+TGG | + | chr7_4:44707072-44707091 | Msa1156420:three_prime_UTR | 25.0% |
| CTATACCAGTCATATTCAAA+AGG | + | chr7_4:44704076-44704095 | Msa1156420:five_prime_UTR | 30.0% | |
| ! | ATATTCAAAAGGGTCACTTT+AGG | + | chr7_4:44704087-44704106 | Msa1156420:five_prime_UTR | 30.0% |
| ! | TATTCAAAAGGGTCACTTTA+GGG | + | chr7_4:44704088-44704107 | Msa1156420:five_prime_UTR | 30.0% |
| TTGGAACAAAGATAAGAAGA+GGG | - | chr7_4:44704364-44704383 | None:intergenic | 30.0% | |
| ATTGGAACAAAGATAAGAAG+AGG | - | chr7_4:44704365-44704384 | None:intergenic | 30.0% | |
| !!! | GATGAGACAAGTTTATTTTG+TGG | + | chr7_4:44704466-44704485 | Msa1156420:CDS | 30.0% |
| TTGAGTTACCAAAAGATAGA+AGG | - | chr7_4:44704585-44704604 | None:intergenic | 30.0% | |
| ! | AAGCCAAAACAGCTTTTATA+TGG | + | chr7_4:44705051-44705070 | Msa1156420:intron | 30.0% |
| ! | CATCCATATAAAAGCTGTTT+TGG | - | chr7_4:44705057-44705076 | None:intergenic | 30.0% |
| ATTATCTTGAGCTTAAACTG+GGG | + | chr7_4:44705149-44705168 | Msa1156420:intron | 30.0% | |
| ! | CAATGAAAAGCATAGGTATT+AGG | - | chr7_4:44705339-44705358 | None:intergenic | 30.0% |
| ! | TCAAAAGCGCATTAAAGAAT+TGG | + | chr7_4:44705595-44705614 | Msa1156420:CDS | 30.0% |
| AATTCATTGTGAGAAGCAAA+AGG | + | chr7_4:44705754-44705773 | Msa1156420:CDS | 30.0% | |
| !!! | AATCAATCATTTTAGAACGG+AGG | + | chr7_4:44706395-44706414 | Msa1156420:intron | 30.0% |
| !!! | ATCAATCATTTTAGAACGGA+GGG | + | chr7_4:44706396-44706415 | Msa1156420:intron | 30.0% |
| ! | ATTTTCTCAGATTTTCCACA+AGG | - | chr7_4:44706728-44706747 | None:intergenic | 30.0% |
| TCTGAGAAAATATCTATTGG+AGG | + | chr7_4:44706737-44706756 | Msa1156420:CDS | 30.0% | |
| !!! | TTTATTTTGATGCACTAGCA+GGG | - | chr7_4:44706784-44706803 | None:intergenic | 30.0% |
| ! | ATAATGGAATGAGGATGTAT+TGG | + | chr7_4:44706827-44706846 | Msa1156420:three_prime_UTR | 30.0% |
| CCAATCAAACAAAGTAGAAA+TGG | - | chr7_4:44706857-44706876 | None:intergenic | 30.0% | |
| ! | CCATTTCTACTTTGTTTGAT+TGG | + | chr7_4:44706854-44706873 | Msa1156420:three_prime_UTR | 30.0% |
| AGTATATTCAAATCGCATCT+GGG | + | chr7_4:44707037-44707056 | Msa1156420:three_prime_UTR | 30.0% | |
| ACAACATGGTTATTAATCAC+AGG | + | chr7_4:44707086-44707105 | Msa1156420:three_prime_UTR | 30.0% | |
| CAACATGGTTATTAATCACA+GGG | + | chr7_4:44707087-44707106 | Msa1156420:three_prime_UTR | 30.0% | |
| ATGACTGGTATAGAGTAGTT+AGG | - | chr7_4:44704069-44704088 | None:intergenic | 35.0% | |
| ! | ATTCAAAAGGGTCACTTTAG+GGG | + | chr7_4:44704089-44704108 | Msa1156420:five_prime_UTR | 35.0% |
| CTCTCTTCAATTTGCAACAA+TGG | + | chr7_4:44704112-44704131 | Msa1156420:exon | 35.0% | |
| TCTTCAATTTGCAACAATGG+AGG | + | chr7_4:44704115-44704134 | Msa1156420:exon | 35.0% | |
| AAACTCTTGCTCATCAAATG+TGG | - | chr7_4:44704302-44704321 | None:intergenic | 35.0% | |
| CTTTGTTCCAATAAAACCCA+AGG | + | chr7_4:44704373-44704392 | Msa1156420:CDS | 35.0% | |
| !! | ACTATTGCCTTGGGTTTTAT+TGG | - | chr7_4:44704383-44704402 | None:intergenic | 35.0% |
| AGTTGTTGTACTATTGCCTT+GGG | - | chr7_4:44704392-44704411 | None:intergenic | 35.0% | |
| TAGTTGTTGTACTATTGCCT+TGG | - | chr7_4:44704393-44704412 | None:intergenic | 35.0% | |
| !! | AGTTGGAGCTATTACTTTTG+TGG | - | chr7_4:44704516-44704535 | None:intergenic | 35.0% |
| TTCCAAAGACTTGATTGAGT+TGG | - | chr7_4:44704533-44704552 | None:intergenic | 35.0% | |
| ! | ACCAAAAGATAGAAGGTATG+TGG | - | chr7_4:44704578-44704597 | None:intergenic | 35.0% |
| !! | TGTGACATTGGTTCAATGAT+TGG | - | chr7_4:44704616-44704635 | None:intergenic | 35.0% |
| AAGCAACAAAGAAGGTTAGA+AGG | + | chr7_4:44704674-44704693 | Msa1156420:CDS | 35.0% | |
| GACAGTACAAGATCACTTAA+TGG | + | chr7_4:44704705-44704724 | Msa1156420:CDS | 35.0% | |
| !!! | AAACTAACCTTTTTCAAGCC+AGG | - | chr7_4:44704790-44704809 | None:intergenic | 35.0% |
| ACAACATGTTTGTGTAAGAC+AGG | - | chr7_4:44705444-44705463 | None:intergenic | 35.0% | |
| CAAATCCAGCAATATTCAAG+TGG | + | chr7_4:44705642-44705661 | Msa1156420:CDS | 35.0% | |
| GATTTCCACTTGAATATTGC+TGG | - | chr7_4:44705650-44705669 | None:intergenic | 35.0% | |
| TGAAGCTAGAGTCAAAGAAA+AGG | + | chr7_4:44705718-44705737 | Msa1156420:CDS | 35.0% | |
| AGTAGTAGCATGTTACCATT+CGG | + | chr7_4:44705830-44705849 | Msa1156420:CDS | 35.0% | |
| TGTAATCAACATTTGTGCTC+AGG | + | chr7_4:44705865-44705884 | Msa1156420:CDS | 35.0% | |
| ! | ATGAATAAGTAGGGTGTCTA+GGG | + | chr7_4:44705978-44705997 | Msa1156420:intron | 35.0% |
| !! | ATTATTTTATGCAAGGGTCG+AGG | - | chr7_4:44706010-44706029 | None:intergenic | 35.0% |
| ! | TGAGCATTACTAAGTTGACA+GGG | - | chr7_4:44706040-44706059 | None:intergenic | 35.0% |
| TCAACTTAGTAATGCTCACA+GGG | + | chr7_4:44706042-44706061 | Msa1156420:intron | 35.0% | |
| ATAGGTCAATCATTGTGAGA+AGG | - | chr7_4:44706147-44706166 | None:intergenic | 35.0% | |
| TGCTTATGTTCACACCAAAA+TGG | + | chr7_4:44706448-44706467 | Msa1156420:intron | 35.0% | |
| GCTTATGTTCACACCAAAAT+GGG | + | chr7_4:44706449-44706468 | Msa1156420:intron | 35.0% | |
| !!! | CTTTATTTTGATGCACTAGC+AGG | - | chr7_4:44706785-44706804 | None:intergenic | 35.0% |
| CTGCTAGTGCATCAAAATAA+AGG | + | chr7_4:44706783-44706802 | Msa1156420:three_prime_UTR | 35.0% | |
| !! | AATTTGGCTTTGTAAACGCA+TGG | + | chr7_4:44707014-44707033 | Msa1156420:three_prime_UTR | 35.0% |
| GAGTATATTCAAATCGCATC+TGG | + | chr7_4:44707036-44707055 | Msa1156420:three_prime_UTR | 35.0% | |
| ! | GTGACCCTTTTGAATATGAC+TGG | - | chr7_4:44704084-44704103 | None:intergenic | 40.0% |
| !! | CACATGATTCTGGTTCTTCA+AGG | - | chr7_4:44704339-44704358 | None:intergenic | 40.0% |
| CTCCAACTCAATCAAGTCTT+TGG | + | chr7_4:44704528-44704547 | Msa1156420:CDS | 40.0% | |
| ! | AAAGATAGAAGGTATGTGGC+TGG | - | chr7_4:44704574-44704593 | None:intergenic | 40.0% |
| ! | GCCACATACCTTCTATCTTT+TGG | + | chr7_4:44704574-44704593 | Msa1156420:CDS | 40.0% |
| AGTGAAGGAAGCAACAAAGA+AGG | + | chr7_4:44704666-44704685 | Msa1156420:CDS | 40.0% | |
| AAGATCACTTAATGGCTGAG+AGG | + | chr7_4:44704713-44704732 | Msa1156420:CDS | 40.0% | |
| !!! | CTTTTTCAAGCCAGGTATCA+TGG | - | chr7_4:44704782-44704801 | None:intergenic | 40.0% |
| ! | CATGATACCTGGCTTGAAAA+AGG | + | chr7_4:44704780-44704799 | Msa1156420:CDS | 40.0% |
| AATCTCAAGCAGTGATTCTG+AGG | - | chr7_4:44705699-44705718 | None:intergenic | 40.0% | |
| !! | ACAAGAATAGAAGCACCGAA+TGG | - | chr7_4:44705848-44705867 | None:intergenic | 40.0% |
| ! | GATGAATAAGTAGGGTGTCT+AGG | + | chr7_4:44705977-44705996 | Msa1156420:intron | 40.0% |
| ! | GTGAGCATTACTAAGTTGAC+AGG | - | chr7_4:44706041-44706060 | None:intergenic | 40.0% |
| GTCAACTTAGTAATGCTCAC+AGG | + | chr7_4:44706041-44706060 | Msa1156420:intron | 40.0% | |
| GTCAATCATTGTGAGAAGGA+TGG | - | chr7_4:44706143-44706162 | None:intergenic | 40.0% | |
| GAACATAAGCATCCACAATG+AGG | - | chr7_4:44706439-44706458 | None:intergenic | 40.0% | |
| ! | TGCTAAAGCTTTGATGCAGA+TGG | + | chr7_4:44706674-44706693 | Msa1156420:intron | 40.0% |
| ! | ATTTTCCACAAGGTCATCCA+TGG | - | chr7_4:44706718-44706737 | None:intergenic | 40.0% |
| TGCAACAATGGAGGATTCAC+TGG | + | chr7_4:44704124-44704143 | Msa1156420:exon | 45.0% | |
| TTGCTCATCAAATGTGGTGG+TGG | - | chr7_4:44704296-44704315 | None:intergenic | 45.0% | |
| CTCTTGCTCATCAAATGTGG+TGG | - | chr7_4:44704299-44704318 | None:intergenic | 45.0% | |
| GAAGAGGGTTCACATGATTC+TGG | - | chr7_4:44704349-44704368 | None:intergenic | 45.0% | |
| GACAGATGAAGCAAGAGTGA+AGG | + | chr7_4:44704651-44704670 | Msa1156420:CDS | 45.0% | |
| ACTTAATGGCTGAGAGGAAG+AGG | + | chr7_4:44704719-44704738 | Msa1156420:CDS | 45.0% | |
| GATGGATGAAGAAGACAGCA+TGG | + | chr7_4:44706692-44706711 | Msa1156420:intron | 45.0% | |
| GCACTTTCAGCCATGATACC+TGG | + | chr7_4:44704769-44704788 | Msa1156420:CDS | 50.0% | |
| TGAAGAAGACAGCATGGCCA+TGG | + | chr7_4:44706698-44706717 | Msa1156420:CDS | 50.0% | |
| AGCCTCCATATTCGCAGGAA+CGG | - | chr7_4:44707113-44707132 | None:intergenic | 50.0% | |
| TTCCTGCGAATATGGAGGCT+CGG | + | chr7_4:44707113-44707132 | Msa1156420:three_prime_UTR | 50.0% | |
| TGGCTGAGAGGAAGAGGAGA+AGG | + | chr7_4:44704725-44704744 | Msa1156420:CDS | 55.0% | |
| GGCTGAGAGGAAGAGGAGAA+GGG | + | chr7_4:44704726-44704745 | Msa1156420:CDS | 55.0% | |
| CATGGCCATGGATGACCTTG+TGG | + | chr7_4:44706710-44706729 | Msa1156420:CDS | 55.0% | |
| AACCGAGCCTCCATATTCGC+AGG | - | chr7_4:44707118-44707137 | None:intergenic | 55.0% | |
| CAGGGCCGTTCCTGCGAATA+TGG | + | chr7_4:44707105-44707124 | Msa1156420:three_prime_UTR | 60.0% | |
| GGCCGTTCCTGCGAATATGG+AGG | + | chr7_4:44707108-44707127 | Msa1156420:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 44704066 | 44707154 | 44704066 | ID=Msa1156420;Name=Msa1156420 |
| chr7_4 | mRNA | 44704066 | 44707154 | 44704066 | ID=Msa1156420-mRNA-1;Parent=Msa1156420;Name=Msa1156420-mRNA-1;_AED=0.00;_eAED=0.00;_QI=65|1|1|1|1|1|4|375|334 |
| chr7_4 | exon | 44704066 | 44704166 | 44704066 | ID=Msa1156420-mRNA-1:exon:11544;Parent=Msa1156420-mRNA-1 |
| chr7_4 | exon | 44704262 | 44704801 | 44704262 | ID=Msa1156420-mRNA-1:exon:11545;Parent=Msa1156420-mRNA-1 |
| chr7_4 | exon | 44705545 | 44705886 | 44705545 | ID=Msa1156420-mRNA-1:exon:11546;Parent=Msa1156420-mRNA-1 |
| chr7_4 | exon | 44706693 | 44707154 | 44706693 | ID=Msa1156420-mRNA-1:exon:11547;Parent=Msa1156420-mRNA-1 |
| chr7_4 | five_prime_UTR | 44704066 | 44704130 | 44704066 | ID=Msa1156420-mRNA-1:five_prime_utr;Parent=Msa1156420-mRNA-1 |
| chr7_4 | CDS | 44704131 | 44704166 | 44704131 | ID=Msa1156420-mRNA-1:cds;Parent=Msa1156420-mRNA-1 |
| chr7_4 | CDS | 44704262 | 44704801 | 44704262 | ID=Msa1156420-mRNA-1:cds;Parent=Msa1156420-mRNA-1 |
| chr7_4 | CDS | 44705545 | 44705886 | 44705545 | ID=Msa1156420-mRNA-1:cds;Parent=Msa1156420-mRNA-1 |
| chr7_4 | CDS | 44706693 | 44706779 | 44706693 | ID=Msa1156420-mRNA-1:cds;Parent=Msa1156420-mRNA-1 |
| chr7_4 | three_prime_UTR | 44706780 | 44707154 | 44706780 | ID=Msa1156420-mRNA-1:three_prime_utr;Parent=Msa1156420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
