AlfalfaGEDB | Msa1156420

M. sativa cultivar zhongmu-4 / Msa1156420

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156420	XP_003624235.1	94.048	336	17	3	1	334	1	335	0.0	599

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156420	sp\|Q9T072\|BH025_ARATH	39.013	223	115	6	118	326	109	324	3.15e-35	133

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156420	G7KSG4	94.048	336	17	3	1	334	1	335	0.0	599

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TFs/TRs:

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Gene ID	Type	Classification
Msa1156420	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1029420	Msa1156420	0.957441	2.692298e-115	-8.615850e-47
Msa1033660	Msa1156420	0.801889	7.277285e-49	-8.615850e-47
Msa1068280	Msa1156420	0.946903	1.894458e-105	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156420	MtrunA17_Chr7g0249811	94.048	336	17	3	1	334	1	335	0.0	599
Msa1156420	MtrunA17_Chr8g0336681	45.528	246	104	5	115	332	97	340	1.14e-56	187
Msa1156420	MtrunA17_Chr4g0002801	36.986	365	159	11	1	328	1	331	3.53e-52	175
Msa1156420	MtrunA17_Chr2g0333641	36.182	351	154	9	1	326	1	306	5.17e-52	174
Msa1156420	MtrunA17_Chr2g0333621	36.901	355	152	10	1	327	1	311	3.24e-51	172
Msa1156420	MtrunA17_Chr4g0002781	35.121	373	174	11	1	328	1	350	2.64e-49	168
Msa1156420	MtrunA17_Chr5g0400661	35.461	282	133	5	95	327	53	334	7.44e-43	150
Msa1156420	MtrunA17_Chr5g0400621	42.408	191	101	1	148	329	141	331	5.05e-41	146
Msa1156420	MtrunA17_Chr4g0054561	45.251	179	91	2	155	326	146	324	2.07e-40	144
Msa1156420	MtrunA17_Chr4g0049331	40.164	244	123	6	101	323	62	303	4.30e-40	143

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1156420	AT4G37850.2	39.013	223	115	6	118	326	109	324	3.20e-36	133
Msa1156420	AT4G37850.1	39.013	223	115	6	118	326	109	324	3.20e-36	133
Msa1156420	AT2G22770.1	40.609	197	93	2	156	328	124	320	8.85e-36	132
Msa1156420	AT2G22750.2	38.636	264	117	7	73	322	65	297	1.35e-32	123
Msa1156420	AT2G22750.5	38.636	264	117	7	73	322	89	321	2.40e-32	123
Msa1156420	AT2G22750.3	38.636	264	117	7	73	322	93	325	2.59e-32	123
Msa1156420	AT2G22760.1	40.556	180	94	3	157	323	112	291	3.11e-32	122
Msa1156420	AT2G22750.1	39.015	264	115	8	73	322	65	296	8.61e-32	121
Msa1156420	AT2G22750.4	39.015	264	115	8	73	322	93	324	1.27e-31	121
Msa1156420	AT2G22760.2	38.650	163	88	2	157	307	112	274	6.53e-27	107

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Find 79 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTTGCTCATCAAATG+TGG	0.646764	7_4:-44704299	None:intergenic
AAAGATAGAAGGTATGTGGC+TGG	0.543699	7_4:-44704571	None:intergenic
AAAGGACAAAATACTATTTG+TGG	0.476362	7_4:-44704443	None:intergenic
AAATAAACTTGTCTCATCAA+AGG	0.579876	7_4:-44704461	None:intergenic
AAATCTGAGAAAATATCTAT+TGG	0.423346	7_4:+44706734	Msa1156420:CDS
AACCGAGCCTCCATATTCGC+AGG	0.555589	7_4:-44707115	None:intergenic
AAGATCACTTAATGGCTGAG+AGG	0.675984	7_4:+44704713	Msa1156420:CDS
AAGCAACAAAGAAGGTTAGA+AGG	0.446951	7_4:+44704674	Msa1156420:CDS
AAGGACAAAATACTATTTGT+GGG	0.492056	7_4:-44704442	None:intergenic
AATCTCAAGCAGTGATTCTG+AGG	0.530393	7_4:-44705696	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTATACCAGTCATATTCAAA+AGG	+	chr7_4:44704076-44704095	Msa1156420:five_prime_UTR	30.0%
TTGGAACAAAGATAAGAAGA+GGG	-	chr7_4:44704364-44704383	None:intergenic	30.0%
ATTGGAACAAAGATAAGAAG+AGG	-	chr7_4:44704365-44704384	None:intergenic	30.0%
TTGAGTTACCAAAAGATAGA+AGG	-	chr7_4:44704585-44704604	None:intergenic	30.0%
ATTATCTTGAGCTTAAACTG+GGG	+	chr7_4:44705149-44705168	Msa1156420:intron	30.0%
AATTCATTGTGAGAAGCAAA+AGG	+	chr7_4:44705754-44705773	Msa1156420:CDS	30.0%
TCTGAGAAAATATCTATTGG+AGG	+	chr7_4:44706737-44706756	Msa1156420:CDS	30.0%
CCAATCAAACAAAGTAGAAA+TGG	-	chr7_4:44706857-44706876	None:intergenic	30.0%
AGTATATTCAAATCGCATCT+GGG	+	chr7_4:44707037-44707056	Msa1156420:three_prime_UTR	30.0%
ACAACATGGTTATTAATCAC+AGG	+	chr7_4:44707086-44707105	Msa1156420:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	44704066	44707154	44704066	ID=Msa1156420;Name=Msa1156420
chr7_4	mRNA	44704066	44707154	44704066	ID=Msa1156420-mRNA-1;Parent=Msa1156420;Name=Msa1156420-mRNA-1;_AED=0.00;_eAED=0.00;_QI=65\|1\|1\|1\|1\|1\|4\|375\|334
chr7_4	exon	44704066	44704166	44704066	ID=Msa1156420-mRNA-1:exon:11544;Parent=Msa1156420-mRNA-1
chr7_4	exon	44704262	44704801	44704262	ID=Msa1156420-mRNA-1:exon:11545;Parent=Msa1156420-mRNA-1
chr7_4	exon	44705545	44705886	44705545	ID=Msa1156420-mRNA-1:exon:11546;Parent=Msa1156420-mRNA-1
chr7_4	exon	44706693	44707154	44706693	ID=Msa1156420-mRNA-1:exon:11547;Parent=Msa1156420-mRNA-1
chr7_4	five_prime_UTR	44704066	44704130	44704066	ID=Msa1156420-mRNA-1:five_prime_utr;Parent=Msa1156420-mRNA-1
chr7_4	CDS	44704131	44704166	44704131	ID=Msa1156420-mRNA-1:cds;Parent=Msa1156420-mRNA-1
chr7_4	CDS	44704262	44704801	44704262	ID=Msa1156420-mRNA-1:cds;Parent=Msa1156420-mRNA-1
chr7_4	CDS	44705545	44705886	44705545	ID=Msa1156420-mRNA-1:cds;Parent=Msa1156420-mRNA-1
chr7_4	CDS	44706693	44706779	44706693	ID=Msa1156420-mRNA-1:cds;Parent=Msa1156420-mRNA-1
chr7_4	three_prime_UTR	44706780	44707154	44706780	ID=Msa1156420-mRNA-1:three_prime_utr;Parent=Msa1156420-mRNA-1

Gene Sequence

>Msa1156420

ATGGAGGATTCACTGGAGAATTTGATTTCTTATATGGAAATGGAAGATGATGTCTTGAATCAAAGTACCACCACCACATTTGATGAGCAAGAGTTTCTCAAAGATATCATCCTTGAAGAACCAGAATCATGTGAACCCTCTTCTTATCTTTGTTCCAATAAAACCCAAGGCAATAGTACAACAACTATAATAAATGTTGAAGGTGATGCGACTAGTCCCACAAATAGTATTTTGTCCTTTGATGAGACAAGTTTATTTTGTGGTGACTATGAGAATGTTGAAACAAACCACAAAAGTAATAGCTCCAACTCAATCAAGTCTTTGGAAAGATCTTGTGTTTCTTCTCCAGCCACATACCTTCTATCTTTTGGTAACTCAAGTATTGAACCAATCATTGAACCAATGTCACATAAAACTAAAAGAAGGACAGATGAAGCAAGAGTGAAGGAAGCAACAAAGAAGGTTAGAAGGTCATGTGAGACAGTACAAGATCACTTAATGGCTGAGAGGAAGAGGAGAAGGGAATTAACAGAGAATATCATAGCACTTTCAGCCATGATACCTGGCTTGAAAAAGATGGACAAGTGTTATGTACTTAGTGAAGCTGTGAATCACACAAAACAGCTTCAAAAGCGCATTAAAGAATTGGAGAATCAAAATAAAGACAACAAAGCAAATCCAGCAATATTCAAGTGGAAATCTCAAGTTTCATCAAATAAAAAGAAATCCTCAGAATCACTGCTTGAGATTGAAGCTAGAGTCAAAGAAAAGGAAGTACTCATCAGAATTCATTGTGAGAAGCAAAAGGACATAGTGCTTAAAATACATGAATTGCTTGAAAAGTTCAATCTCACTATAACAAGTAGTAGCATGTTACCATTCGGTGCTTCTATTCTTGTAATCAACATTTGTGCTCAGATGGATGAAGAAGACAGCATGGCCATGGATGACCTTGTGGAAAATCTGAGAAAATATCTATTGGAGGCACATGAGAGTCAATTGTGA

Protein sequence

>Msa1156420

MEDSLENLISYMEMEDDVLNQSTTTTFDEQEFLKDIILEEPESCEPSSYLCSNKTQGNSTTTIINVEGDATSPTNSILSFDETSLFCGDYENVETNHKSNSSNSIKSLERSCVSSPATYLLSFGNSSIEPIIEPMSHKTKRRTDEARVKEATKKVRRSCETVQDHLMAERKRRRELTENIIALSAMIPGLKKMDKCYVLSEAVNHTKQLQKRIKELENQNKDNKANPAIFKWKSQVSSNKKKSSESLLEIEARVKEKEVLIRIHCEKQKDIVLKIHELLEKFNLTITSSSMLPFGASILVINICAQMDEEDSMAMDDLVENLRKYLLEAHESQL*