AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1033660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033660 MtrunA17_Chr7g0256551 94.118 102 6 0 1 102 1 102 1.67e-68 205
Msa1033660 MtrunA17_Chr8g0352871 73.000 100 26 1 1 100 1 99 2.78e-44 141
Msa1033660 MtrunA17_Chr4g0021731 68.750 96 21 1 1 96 3 89 1.08e-41 132
Msa1033660 MtrunA17_Chr3g0082861 70.330 91 27 0 7 97 2 92 2.27e-40 131
Msa1033660 MtrunA17_Chr5g0414931 58.947 95 34 2 8 102 15 104 2.31e-31 110
Msa1033660 MtrunA17_Chr1g0170741 60.638 94 31 1 8 101 7 94 2.41e-30 106
Msa1033660 MtrunA17_Chr3g0128691 60.227 88 29 1 10 97 19 100 3.74e-29 102
Msa1033660 MtrunA17_Chr3g0118211 53.061 98 37 2 4 101 18 106 3.07e-27 99.0
Msa1033660 MtrunA17_Chr4g0059571 56.383 94 32 2 8 101 25 109 3.61e-27 99.0
Msa1033660 MtrunA17_Chr3g0124861 52.475 101 39 2 6 97 19 119 1.05e-26 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033660 AT3G57040.2 76.471 102 23 1 1 101 1 102 2.28e-49 156
Msa1033660 AT3G57040.1 76.471 102 23 1 1 101 1 102 2.28e-49 156
Msa1033660 AT2G41310.1 71.569 102 28 1 1 102 1 101 1.63e-46 149
Msa1033660 AT3G56380.1 54.255 94 35 1 4 97 15 100 2.73e-29 103
Msa1033660 AT1G19050.1 54.255 94 34 1 8 101 23 107 3.16e-29 104
Msa1033660 AT3G56380.2 54.348 92 34 1 4 95 15 98 4.07e-29 102
Msa1033660 AT3G48100.1 52.000 100 40 2 2 101 18 109 8.62e-29 102
Msa1033660 AT1G59940.1 56.383 94 32 2 8 101 32 116 1.31e-28 103
Msa1033660 AT1G10470.3 55.319 94 33 2 8 101 19 103 5.23e-28 102
Msa1033660 AT1G10470.1 56.383 94 32 2 8 101 33 117 6.54e-28 102
Msa1033660 AT1G59940.2 56.383 94 32 2 8 101 124 208 2.23e-27 102
Msa1033660 AT1G74890.1 53.191 94 35 2 8 101 17 101 2.50e-27 99.8
Msa1033660 AT5G62920.1 52.688 93 35 1 9 101 25 108 1.65e-26 97.1
Msa1033660 AT2G40670.1 52.688 93 36 2 6 97 26 111 3.62e-26 95.5
Msa1033660 AT2G40670.2 52.747 91 35 2 6 95 26 109 4.23e-26 95.1

Find 61 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATCCTTAGTTGGAGAAAA+TGG 0.126733 7_1:-68827593 Msa1033660:exon
ACTATAGATTCATTCTAATT+TGG 0.150893 7_1:-68826425 Msa1033660:three_prime_UTR
TTTGGAAAATTTGCAAGATT+TGG 0.165434 7_1:-68827843 Msa1033660:five_prime_UTR
GGAAATACAGATGGTGTATT+TGG 0.194626 7_1:+68827127 None:intergenic
TTAAACAATATGTCTTTAAA+TGG 0.215842 7_1:-68826484 Msa1033660:three_prime_UTR
GCTTTGTGGGATGTGGATTT+TGG 0.218342 7_1:-68827799 Msa1033660:five_prime_UTR
TTCAAATGGTTAATGATCTT+TGG 0.258855 7_1:-68826750 Msa1033660:three_prime_UTR
AAGGATTAAAAGAAGGTAAA+TGG 0.265428 7_1:+68827608 None:intergenic
ACATGATCAATAATTGTTTC+AGG 0.276425 7_1:+68826686 None:intergenic
TTGGAAAATTTGCAAGATTT+GGG 0.299967 7_1:-68827842 Msa1033660:five_prime_UTR
CATGTAATTCAAGATCAATT+TGG 0.308343 7_1:-68827861 Msa1033660:five_prime_UTR
AGAAGCAAAGAAATGGAAAA+TGG 0.314441 7_1:+68827650 None:intergenic
AGAGTCACAGTTTCATGTTT+TGG 0.318671 7_1:-68827560 Msa1033660:CDS
GCAAGATTTGGGATGAAATC+TGG 0.334593 7_1:-68827831 Msa1033660:five_prime_UTR
GAGAAATCGAAATCGAATTC+TGG 0.335856 7_1:+68826507 None:intergenic
GCAGTTACTACAGTTGATTC+TGG 0.344676 7_1:-68827199 Msa1033660:intron
AAGAAAATCAAGGTAAGCTT+TGG 0.347120 7_1:-68826882 Msa1033660:CDS
GAAATACAGATGGTGTATTT+GGG 0.355026 7_1:+68827128 None:intergenic
TTGCGAACATAAAATTTAGT+AGG 0.369760 7_1:-68826457 Msa1033660:three_prime_UTR
AACTATACCTGATGATTGTT+AGG 0.391930 7_1:+68827106 None:intergenic
CAAATTGATCTTGAATTACA+TGG 0.393419 7_1:+68827862 None:intergenic
TTAAAGTGGACAATAAATAT+TGG 0.394421 7_1:+68826828 None:intergenic
AACTACGTTGTTTGAGAAAA+GGG 0.394508 7_1:+68826776 None:intergenic
TAACTACGTTGTTTGAGAAA+AGG 0.394753 7_1:+68826775 None:intergenic
TACTGTATGCCTGGCATGAC+AGG 0.404554 7_1:-68826918 Msa1033660:CDS
CGATCGGAAATATCCGAGTT+TGG 0.408664 7_1:-68826715 Msa1033660:three_prime_UTR
CTGGTCGGATCTTGCTTTGT+GGG 0.415540 7_1:-68827812 Msa1033660:five_prime_UTR
AGTCTTTGCAATCCGGAGTT+CGG 0.415753 7_1:-68826563 Msa1033660:three_prime_UTR
TCTGGTCGGATCTTGCTTTG+TGG 0.421782 7_1:-68827813 Msa1033660:five_prime_UTR
AATCCTTAGTTGGAGAAAAT+GGG 0.423958 7_1:-68827592 Msa1033660:exon
TTATGGGAGGAATATGAGAT+TGG 0.426769 7_1:+68827746 None:intergenic
ACCCTTGAGGAAAGAAAAGA+TGG 0.432860 7_1:+68827708 None:intergenic
AAGTGAAAGAAGCAAAGAAA+TGG 0.436899 7_1:+68827643 None:intergenic
GGATCTTGCTTTGTGGGATG+TGG 0.439185 7_1:-68827806 Msa1033660:five_prime_UTR
CTCAAAACATCTTCATATCA+AGG 0.455916 7_1:-68827493 Msa1033660:intron
TTGCAATCCGGAGTTCGGTC+GGG 0.460815 7_1:-68826558 Msa1033660:three_prime_UTR
ACAACGTAGTTAGATTCAAA+TGG 0.464579 7_1:-68826764 Msa1033660:three_prime_UTR
TTAAAAGATATAGATGAGTC+AGG 0.470276 7_1:+68826851 None:intergenic
TCCAACTAAGGATTAAAAGA+AGG 0.477610 7_1:+68827601 None:intergenic
TGTATTTCCTAACAATCATC+AGG 0.478134 7_1:-68827113 Msa1033660:intron
GGAAAAGAGTCTTTGCAATC+CGG 0.481719 7_1:-68826570 Msa1033660:three_prime_UTR
AAATCATAGCCTGTCATGCC+AGG 0.488050 7_1:+68826909 None:intergenic
TACAGTTGATTCTGGTAGCA+AGG 0.501635 7_1:-68827191 Msa1033660:CDS
TTGATGACAGCATCATAGAT+AGG 0.505605 7_1:-68827534 Msa1033660:CDS
CTTAATTCCCGACCGAACTC+CGG 0.507319 7_1:+68826551 None:intergenic
ATAACAGATTACTGTATGCC+TGG 0.512220 7_1:-68826927 Msa1033660:CDS
TACAGATGGTGTATTTGGGT+TGG 0.527443 7_1:+68827132 None:intergenic
TGATTTGCTTAAGAAAATCA+AGG 0.528385 7_1:-68826892 Msa1033660:CDS
GGACTTGCTAATATGAAGTA+CGG 0.546532 7_1:+68826647 None:intergenic
AGATATAGATGAGTCAGGAA+TGG 0.547699 7_1:+68826856 None:intergenic
TGTTCTTCTCTTGACCCTTG+AGG 0.553342 7_1:+68827695 None:intergenic
GCTAGAAAGAGTGATTAAAG+TGG 0.562554 7_1:+68826814 None:intergenic
TTGGTATAAGTCAAATCGAT+CGG 0.576049 7_1:-68826731 Msa1033660:three_prime_UTR
TTTCAGGCATAGACCAAACT+CGG 0.579120 7_1:+68826702 None:intergenic
TTTGCAATCCGGAGTTCGGT+CGG 0.584789 7_1:-68826559 Msa1033660:three_prime_UTR
CCCTTGAGGAAAGAAAAGAT+GGG 0.594385 7_1:+68827709 None:intergenic
TTAGTTGGAGAAAATGGGAA+TGG 0.609092 7_1:-68827587 Msa1033660:exon
AATCGAAATCGAATTCTGGT+TGG 0.614093 7_1:+68826511 None:intergenic
TAGATAGGAAGCTTATTGAG+AGG 0.630074 7_1:-68827519 Msa1033660:CDS
GATTTGGGATGAAATCTGGT+CGG 0.673753 7_1:-68827827 Msa1033660:five_prime_UTR
TGATTGTTAGGAAATACAGA+TGG 0.757940 7_1:+68827118 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGTTAATGTTTTTCTTTT+TGG - chr7_1:68827027-68827046 Msa1033660:intron 15.0%
!!! AGATCAAAAAAATTACTTTT+TGG - chr7_1:68827737-68827756 Msa1033660:five_prime_UTR 15.0%
!! TTAAACAATATGTCTTTAAA+TGG - chr7_1:68827867-68827886 Msa1033660:five_prime_UTR 15.0%
!!! TATGTTAATGTTTTTCTTTT+TGG - chr7_1:68827027-68827046 Msa1033660:intron 15.0%
!!! AGATCAAAAAAATTACTTTT+TGG - chr7_1:68827737-68827756 Msa1033660:five_prime_UTR 15.0%
!! TTAAACAATATGTCTTTAAA+TGG - chr7_1:68827867-68827886 Msa1033660:five_prime_UTR 15.0%
!! ATCCTAAAAAAATATTCACT+AGG - chr7_1:68826397-68826416 Msa1033660:three_prime_UTR 20.0%
!!! ATCCTAGTGAATATTTTTTT+AGG + chr7_1:68826402-68826421 None:intergenic 20.0%
!!! GGTTTATTTTTTGTGTTTAT+GGG + chr7_1:68826624-68826643 None:intergenic 20.0%
!! ACAACATTATCATAGTATAA+TGG + chr7_1:68826956-68826975 None:intergenic 20.0%
!!! TACCATGTTAATGTTTTTTT+TGG - chr7_1:68826994-68827013 Msa1033660:intron 20.0%
!!! CTTTTTCAACTTTATAATGT+TGG - chr7_1:68827331-68827350 Msa1033660:intron 20.0%
!! TTAAAGTGGACAATAAATAT+TGG + chr7_1:68827526-68827545 None:intergenic 20.0%
!! ACTATAGATTCATTCTAATT+TGG - chr7_1:68827926-68827945 Msa1033660:five_prime_UTR 20.0%
!! ATCCTAAAAAAATATTCACT+AGG - chr7_1:68826397-68826416 Msa1033660:three_prime_UTR 20.0%
!!! ATCCTAGTGAATATTTTTTT+AGG + chr7_1:68826402-68826421 None:intergenic 20.0%
!!! GGTTTATTTTTTGTGTTTAT+GGG + chr7_1:68826624-68826643 None:intergenic 20.0%
!! ACAACATTATCATAGTATAA+TGG + chr7_1:68826956-68826975 None:intergenic 20.0%
!!! TACCATGTTAATGTTTTTTT+TGG - chr7_1:68826994-68827013 Msa1033660:intron 20.0%
!!! CTTTTTCAACTTTATAATGT+TGG - chr7_1:68827331-68827350 Msa1033660:intron 20.0%
!! TTAAAGTGGACAATAAATAT+TGG + chr7_1:68827526-68827545 None:intergenic 20.0%
!! ACTATAGATTCATTCTAATT+TGG - chr7_1:68827926-68827945 Msa1033660:five_prime_UTR 20.0%
! CAAATTGATCTTGAATTACA+TGG + chr7_1:68826492-68826511 None:intergenic 25.0%
! CATGTAATTCAAGATCAATT+TGG - chr7_1:68826490-68826509 Msa1033660:three_prime_UTR 25.0%
! TTTGGAAAATTTGCAAGATT+TGG - chr7_1:68826508-68826527 Msa1033660:three_prime_UTR 25.0%
! TTGGAAAATTTGCAAGATTT+GGG - chr7_1:68826509-68826528 Msa1033660:three_prime_UTR 25.0%
!!! TTATTTTTTGTGTTTATGGG+AGG + chr7_1:68826621-68826640 None:intergenic 25.0%
!!! GGGTTTATTTTTTGTGTTTA+TGG + chr7_1:68826625-68826644 None:intergenic 25.0%
! AAGGATTAAAAGAAGGTAAA+TGG + chr7_1:68826746-68826765 None:intergenic 25.0%
! TCATCAGATTATGCTATATT+TGG + chr7_1:68826897-68826916 None:intergenic 25.0%
!!! CATAATCTGATGAACTTTTT+TGG - chr7_1:68826904-68826923 Msa1033660:CDS 25.0%
!! ATGGATTATGTGTTTAAGAA+AGG + chr7_1:68826937-68826956 None:intergenic 25.0%
! GTCCAAAAAAAACATTAACA+TGG + chr7_1:68826999-68827018 None:intergenic 25.0%
! TAACAGAATGAATGAATGAA+TGG - chr7_1:68827110-68827129 Msa1033660:intron 25.0%
!!! TAATGTTGGATTGTTTTTTC+TGG - chr7_1:68827345-68827364 Msa1033660:intron 25.0%
! CTATAAAACACAAAAATCCA+AGG + chr7_1:68827383-68827402 None:intergenic 25.0%
!! CTTGGATTTTTGTGTTTTAT+AGG - chr7_1:68827381-68827400 Msa1033660:intron 25.0%
!! TTTTTGTGTTTTATAGGAAG+TGG - chr7_1:68827387-68827406 Msa1033660:intron 25.0%
!!! TGATTTGCTTAAGAAAATCA+AGG - chr7_1:68827459-68827478 Msa1033660:intron 25.0%
! TTAAAAGATATAGATGAGTC+AGG + chr7_1:68827503-68827522 None:intergenic 25.0%
! TTCAAATGGTTAATGATCTT+TGG - chr7_1:68827601-68827620 Msa1033660:five_prime_UTR 25.0%
! ACATGATCAATAATTGTTTC+AGG + chr7_1:68827668-68827687 None:intergenic 25.0%
!!! TTTTTTGATCTCAGACAAAA+GGG + chr7_1:68827728-68827747 None:intergenic 25.0%
!!! TTTTTTTGATCTCAGACAAA+AGG + chr7_1:68827729-68827748 None:intergenic 25.0%
! TTGCGAACATAAAATTTAGT+AGG - chr7_1:68827894-68827913 Msa1033660:five_prime_UTR 25.0%
! CAAATTGATCTTGAATTACA+TGG + chr7_1:68826492-68826511 None:intergenic 25.0%
! CATGTAATTCAAGATCAATT+TGG - chr7_1:68826490-68826509 Msa1033660:three_prime_UTR 25.0%
! TTTGGAAAATTTGCAAGATT+TGG - chr7_1:68826508-68826527 Msa1033660:three_prime_UTR 25.0%
! TTGGAAAATTTGCAAGATTT+GGG - chr7_1:68826509-68826528 Msa1033660:three_prime_UTR 25.0%
!!! TTATTTTTTGTGTTTATGGG+AGG + chr7_1:68826621-68826640 None:intergenic 25.0%
!!! GGGTTTATTTTTTGTGTTTA+TGG + chr7_1:68826625-68826644 None:intergenic 25.0%
! AAGGATTAAAAGAAGGTAAA+TGG + chr7_1:68826746-68826765 None:intergenic 25.0%
! TCATCAGATTATGCTATATT+TGG + chr7_1:68826897-68826916 None:intergenic 25.0%
!!! CATAATCTGATGAACTTTTT+TGG - chr7_1:68826904-68826923 Msa1033660:CDS 25.0%
!! ATGGATTATGTGTTTAAGAA+AGG + chr7_1:68826937-68826956 None:intergenic 25.0%
! GTCCAAAAAAAACATTAACA+TGG + chr7_1:68826999-68827018 None:intergenic 25.0%
! TAACAGAATGAATGAATGAA+TGG - chr7_1:68827110-68827129 Msa1033660:intron 25.0%
!!! TAATGTTGGATTGTTTTTTC+TGG - chr7_1:68827345-68827364 Msa1033660:intron 25.0%
! CTATAAAACACAAAAATCCA+AGG + chr7_1:68827383-68827402 None:intergenic 25.0%
!! CTTGGATTTTTGTGTTTTAT+AGG - chr7_1:68827381-68827400 Msa1033660:intron 25.0%
!! TTTTTGTGTTTTATAGGAAG+TGG - chr7_1:68827387-68827406 Msa1033660:intron 25.0%
!!! TGATTTGCTTAAGAAAATCA+AGG - chr7_1:68827459-68827478 Msa1033660:intron 25.0%
! TTAAAAGATATAGATGAGTC+AGG + chr7_1:68827503-68827522 None:intergenic 25.0%
! TTCAAATGGTTAATGATCTT+TGG - chr7_1:68827601-68827620 Msa1033660:five_prime_UTR 25.0%
! ACATGATCAATAATTGTTTC+AGG + chr7_1:68827668-68827687 None:intergenic 25.0%
!!! TTTTTTGATCTCAGACAAAA+GGG + chr7_1:68827728-68827747 None:intergenic 25.0%
!!! TTTTTTTGATCTCAGACAAA+AGG + chr7_1:68827729-68827748 None:intergenic 25.0%
! TTGCGAACATAAAATTTAGT+AGG - chr7_1:68827894-68827913 Msa1033660:five_prime_UTR 25.0%
AGAAGCAAAGAAATGGAAAA+TGG + chr7_1:68826704-68826723 None:intergenic 30.0%
AAGTGAAAGAAGCAAAGAAA+TGG + chr7_1:68826711-68826730 None:intergenic 30.0%
! ACCTTCTTTTAATCCTTAGT+TGG - chr7_1:68826749-68826768 Msa1033660:three_prime_UTR 30.0%
TCCAACTAAGGATTAAAAGA+AGG + chr7_1:68826753-68826772 None:intergenic 30.0%
TAATCCTTAGTTGGAGAAAA+TGG - chr7_1:68826758-68826777 Msa1033660:three_prime_UTR 30.0%
AATCCTTAGTTGGAGAAAAT+GGG - chr7_1:68826759-68826778 Msa1033660:three_prime_UTR 30.0%
CTCAAAACATCTTCATATCA+AGG - chr7_1:68826858-68826877 Msa1033660:exon 30.0%
! TCATATCAAGGTAACTTTTG+AGG - chr7_1:68826870-68826889 Msa1033660:CDS 30.0%
! CATATCAAGGTAACTTTTGA+GGG - chr7_1:68826871-68826890 Msa1033660:CDS 30.0%
!!! TGGACTTTTTGTTTTCACAA+TGG - chr7_1:68827130-68827149 Msa1033660:CDS 30.0%
GAAATACAGATGGTGTATTT+GGG + chr7_1:68827226-68827245 None:intergenic 30.0%
TGATTGTTAGGAAATACAGA+TGG + chr7_1:68827236-68827255 None:intergenic 30.0%
TGTATTTCCTAACAATCATC+AGG - chr7_1:68827238-68827257 Msa1033660:intron 30.0%
AACTATACCTGATGATTGTT+AGG + chr7_1:68827248-68827267 None:intergenic 30.0%
AAGAAAATCAAGGTAAGCTT+TGG - chr7_1:68827469-68827488 Msa1033660:intron 30.0%
AACTACGTTGTTTGAGAAAA+GGG + chr7_1:68827578-68827597 None:intergenic 30.0%
TAACTACGTTGTTTGAGAAA+AGG + chr7_1:68827579-68827598 None:intergenic 30.0%
ACAACGTAGTTAGATTCAAA+TGG - chr7_1:68827587-68827606 Msa1033660:exon 30.0%
TTGGTATAAGTCAAATCGAT+CGG - chr7_1:68827620-68827639 Msa1033660:five_prime_UTR 30.0%
!! TTTAACCATCCAGTTTTTAG+AGG - chr7_1:68827760-68827779 Msa1033660:five_prime_UTR 30.0%
ATTGCTGAAAGTTATCAACT+TGG - chr7_1:68827958-68827977 Msa1033660:five_prime_UTR 30.0%
AGAAGCAAAGAAATGGAAAA+TGG + chr7_1:68826704-68826723 None:intergenic 30.0%
AAGTGAAAGAAGCAAAGAAA+TGG + chr7_1:68826711-68826730 None:intergenic 30.0%
! ACCTTCTTTTAATCCTTAGT+TGG - chr7_1:68826749-68826768 Msa1033660:three_prime_UTR 30.0%
TCCAACTAAGGATTAAAAGA+AGG + chr7_1:68826753-68826772 None:intergenic 30.0%
TAATCCTTAGTTGGAGAAAA+TGG - chr7_1:68826758-68826777 Msa1033660:three_prime_UTR 30.0%
AATCCTTAGTTGGAGAAAAT+GGG - chr7_1:68826759-68826778 Msa1033660:three_prime_UTR 30.0%
CTCAAAACATCTTCATATCA+AGG - chr7_1:68826858-68826877 Msa1033660:exon 30.0%
! TCATATCAAGGTAACTTTTG+AGG - chr7_1:68826870-68826889 Msa1033660:CDS 30.0%
! CATATCAAGGTAACTTTTGA+GGG - chr7_1:68826871-68826890 Msa1033660:CDS 30.0%
!!! TGGACTTTTTGTTTTCACAA+TGG - chr7_1:68827130-68827149 Msa1033660:CDS 30.0%
GAAATACAGATGGTGTATTT+GGG + chr7_1:68827226-68827245 None:intergenic 30.0%
TGATTGTTAGGAAATACAGA+TGG + chr7_1:68827236-68827255 None:intergenic 30.0%
TGTATTTCCTAACAATCATC+AGG - chr7_1:68827238-68827257 Msa1033660:intron 30.0%
AACTATACCTGATGATTGTT+AGG + chr7_1:68827248-68827267 None:intergenic 30.0%
AAGAAAATCAAGGTAAGCTT+TGG - chr7_1:68827469-68827488 Msa1033660:intron 30.0%
AACTACGTTGTTTGAGAAAA+GGG + chr7_1:68827578-68827597 None:intergenic 30.0%
TAACTACGTTGTTTGAGAAA+AGG + chr7_1:68827579-68827598 None:intergenic 30.0%
ACAACGTAGTTAGATTCAAA+TGG - chr7_1:68827587-68827606 Msa1033660:exon 30.0%
TTGGTATAAGTCAAATCGAT+CGG - chr7_1:68827620-68827639 Msa1033660:five_prime_UTR 30.0%
!! TTTAACCATCCAGTTTTTAG+AGG - chr7_1:68827760-68827779 Msa1033660:five_prime_UTR 30.0%
ATTGCTGAAAGTTATCAACT+TGG - chr7_1:68827958-68827977 Msa1033660:five_prime_UTR 30.0%
TTATGGGAGGAATATGAGAT+TGG + chr7_1:68826608-68826627 None:intergenic 35.0%
! ATTCCCATTTTCTCCAACTA+AGG + chr7_1:68826765-68826784 None:intergenic 35.0%
TTAGTTGGAGAAAATGGGAA+TGG - chr7_1:68826764-68826783 Msa1033660:three_prime_UTR 35.0%
! AGAGTCACAGTTTCATGTTT+TGG - chr7_1:68826791-68826810 Msa1033660:three_prime_UTR 35.0%
! TTGATGACAGCATCATAGAT+AGG - chr7_1:68826817-68826836 Msa1033660:three_prime_UTR 35.0%
TAGATAGGAAGCTTATTGAG+AGG - chr7_1:68826832-68826851 Msa1033660:three_prime_UTR 35.0%
!!! TAGCAAGGCTTTAGAGTTTT+TGG - chr7_1:68827175-68827194 Msa1033660:CDS 35.0%
!!! AGCAAGGCTTTAGAGTTTTT+GGG - chr7_1:68827176-68827195 Msa1033660:CDS 35.0%
GGAAATACAGATGGTGTATT+TGG + chr7_1:68827227-68827246 None:intergenic 35.0%
!! TCTGGAATTCTGAAATTCCT+TGG - chr7_1:68827363-68827382 Msa1033660:intron 35.0%
! TTGTGTTTTATAGGAAGTGG+AGG - chr7_1:68827390-68827409 Msa1033660:intron 35.0%
ATAACAGATTACTGTATGCC+TGG - chr7_1:68827424-68827443 Msa1033660:intron 35.0%
AGATATAGATGAGTCAGGAA+TGG + chr7_1:68827498-68827517 None:intergenic 35.0%
GCTAGAAAGAGTGATTAAAG+TGG + chr7_1:68827540-68827559 None:intergenic 35.0%
!! GGACTTGCTAATATGAAGTA+CGG + chr7_1:68827707-68827726 None:intergenic 35.0%
!! CTTTTCCTCTAAAAACTGGA+TGG + chr7_1:68827768-68827787 None:intergenic 35.0%
!! GACTCTTTTCCTCTAAAAAC+TGG + chr7_1:68827772-68827791 None:intergenic 35.0%
AATCGAAATCGAATTCTGGT+TGG + chr7_1:68827843-68827862 None:intergenic 35.0%
GAGAAATCGAAATCGAATTC+TGG + chr7_1:68827847-68827866 None:intergenic 35.0%
TTATGGGAGGAATATGAGAT+TGG + chr7_1:68826608-68826627 None:intergenic 35.0%
! ATTCCCATTTTCTCCAACTA+AGG + chr7_1:68826765-68826784 None:intergenic 35.0%
TTAGTTGGAGAAAATGGGAA+TGG - chr7_1:68826764-68826783 Msa1033660:three_prime_UTR 35.0%
! AGAGTCACAGTTTCATGTTT+TGG - chr7_1:68826791-68826810 Msa1033660:three_prime_UTR 35.0%
! TTGATGACAGCATCATAGAT+AGG - chr7_1:68826817-68826836 Msa1033660:three_prime_UTR 35.0%
TAGATAGGAAGCTTATTGAG+AGG - chr7_1:68826832-68826851 Msa1033660:three_prime_UTR 35.0%
!!! TAGCAAGGCTTTAGAGTTTT+TGG - chr7_1:68827175-68827194 Msa1033660:CDS 35.0%
!!! AGCAAGGCTTTAGAGTTTTT+GGG - chr7_1:68827176-68827195 Msa1033660:CDS 35.0%
GGAAATACAGATGGTGTATT+TGG + chr7_1:68827227-68827246 None:intergenic 35.0%
!! TCTGGAATTCTGAAATTCCT+TGG - chr7_1:68827363-68827382 Msa1033660:intron 35.0%
! TTGTGTTTTATAGGAAGTGG+AGG - chr7_1:68827390-68827409 Msa1033660:intron 35.0%
ATAACAGATTACTGTATGCC+TGG - chr7_1:68827424-68827443 Msa1033660:intron 35.0%
AGATATAGATGAGTCAGGAA+TGG + chr7_1:68827498-68827517 None:intergenic 35.0%
GCTAGAAAGAGTGATTAAAG+TGG + chr7_1:68827540-68827559 None:intergenic 35.0%
!! GGACTTGCTAATATGAAGTA+CGG + chr7_1:68827707-68827726 None:intergenic 35.0%
!! CTTTTCCTCTAAAAACTGGA+TGG + chr7_1:68827768-68827787 None:intergenic 35.0%
!! GACTCTTTTCCTCTAAAAAC+TGG + chr7_1:68827772-68827791 None:intergenic 35.0%
AATCGAAATCGAATTCTGGT+TGG + chr7_1:68827843-68827862 None:intergenic 35.0%
GAGAAATCGAAATCGAATTC+TGG + chr7_1:68827847-68827866 None:intergenic 35.0%
! GCAAGATTTGGGATGAAATC+TGG - chr7_1:68826520-68826539 Msa1033660:three_prime_UTR 40.0%
! GATTTGGGATGAAATCTGGT+CGG - chr7_1:68826524-68826543 Msa1033660:three_prime_UTR 40.0%
! ACCCATCTTTTCTTTCCTCA+AGG - chr7_1:68826641-68826660 Msa1033660:three_prime_UTR 40.0%
CCCTTGAGGAAAGAAAAGAT+GGG + chr7_1:68826645-68826664 None:intergenic 40.0%
! CCCATCTTTTCTTTCCTCAA+GGG - chr7_1:68826642-68826661 Msa1033660:three_prime_UTR 40.0%
ACCCTTGAGGAAAGAAAAGA+TGG + chr7_1:68826646-68826665 None:intergenic 40.0%
! GCAGTTACTACAGTTGATTC+TGG - chr7_1:68827152-68827171 Msa1033660:CDS 40.0%
! TACAGTTGATTCTGGTAGCA+AGG - chr7_1:68827160-68827179 Msa1033660:CDS 40.0%
TACAGATGGTGTATTTGGGT+TGG + chr7_1:68827222-68827241 None:intergenic 40.0%
TTTCAGGCATAGACCAAACT+CGG + chr7_1:68827652-68827671 None:intergenic 40.0%
GGAAAAGAGTCTTTGCAATC+CGG - chr7_1:68827781-68827800 Msa1033660:five_prime_UTR 40.0%
! GCAAGATTTGGGATGAAATC+TGG - chr7_1:68826520-68826539 Msa1033660:three_prime_UTR 40.0%
! GATTTGGGATGAAATCTGGT+CGG - chr7_1:68826524-68826543 Msa1033660:three_prime_UTR 40.0%
! ACCCATCTTTTCTTTCCTCA+AGG - chr7_1:68826641-68826660 Msa1033660:three_prime_UTR 40.0%
CCCTTGAGGAAAGAAAAGAT+GGG + chr7_1:68826645-68826664 None:intergenic 40.0%
! CCCATCTTTTCTTTCCTCAA+GGG - chr7_1:68826642-68826661 Msa1033660:three_prime_UTR 40.0%
ACCCTTGAGGAAAGAAAAGA+TGG + chr7_1:68826646-68826665 None:intergenic 40.0%
! GCAGTTACTACAGTTGATTC+TGG - chr7_1:68827152-68827171 Msa1033660:CDS 40.0%
! TACAGTTGATTCTGGTAGCA+AGG - chr7_1:68827160-68827179 Msa1033660:CDS 40.0%
TACAGATGGTGTATTTGGGT+TGG + chr7_1:68827222-68827241 None:intergenic 40.0%
TTTCAGGCATAGACCAAACT+CGG + chr7_1:68827652-68827671 None:intergenic 40.0%
GGAAAAGAGTCTTTGCAATC+CGG - chr7_1:68827781-68827800 Msa1033660:five_prime_UTR 40.0%
! GCTTTGTGGGATGTGGATTT+TGG - chr7_1:68826552-68826571 Msa1033660:three_prime_UTR 45.0%
! TTGTGGGATGTGGATTTTGG+TGG - chr7_1:68826555-68826574 Msa1033660:three_prime_UTR 45.0%
!! TGTGGGATGTGGATTTTGGT+GGG - chr7_1:68826556-68826575 Msa1033660:three_prime_UTR 45.0%
TGTTCTTCTCTTGACCCTTG+AGG + chr7_1:68826659-68826678 None:intergenic 45.0%
AAATCATAGCCTGTCATGCC+AGG + chr7_1:68827445-68827464 None:intergenic 45.0%
CGATCGGAAATATCCGAGTT+TGG - chr7_1:68827636-68827655 Msa1033660:five_prime_UTR 45.0%
AGTCTTTGCAATCCGGAGTT+CGG - chr7_1:68827788-68827807 Msa1033660:five_prime_UTR 45.0%
! GCTTTGTGGGATGTGGATTT+TGG - chr7_1:68826552-68826571 Msa1033660:three_prime_UTR 45.0%
! TTGTGGGATGTGGATTTTGG+TGG - chr7_1:68826555-68826574 Msa1033660:three_prime_UTR 45.0%
!! TGTGGGATGTGGATTTTGGT+GGG - chr7_1:68826556-68826575 Msa1033660:three_prime_UTR 45.0%
TGTTCTTCTCTTGACCCTTG+AGG + chr7_1:68826659-68826678 None:intergenic 45.0%
AAATCATAGCCTGTCATGCC+AGG + chr7_1:68827445-68827464 None:intergenic 45.0%
CGATCGGAAATATCCGAGTT+TGG - chr7_1:68827636-68827655 Msa1033660:five_prime_UTR 45.0%
AGTCTTTGCAATCCGGAGTT+CGG - chr7_1:68827788-68827807 Msa1033660:five_prime_UTR 45.0%
!!! TAATGTTTATTTATTTATTT+TGG - chr7_1:68827063-68827082 Msa1033660:intron 5.0%
!!! TAATGTTTATTTATTTATTT+TGG - chr7_1:68827063-68827082 Msa1033660:intron 5.0%
TCTGGTCGGATCTTGCTTTG+TGG - chr7_1:68826538-68826557 Msa1033660:three_prime_UTR 50.0%
CTGGTCGGATCTTGCTTTGT+GGG - chr7_1:68826539-68826558 Msa1033660:three_prime_UTR 50.0%
GGATCTTGCTTTGTGGGATG+TGG - chr7_1:68826545-68826564 Msa1033660:three_prime_UTR 50.0%
TACTGTATGCCTGGCATGAC+AGG - chr7_1:68827433-68827452 Msa1033660:intron 50.0%
TTTGCAATCCGGAGTTCGGT+CGG - chr7_1:68827792-68827811 Msa1033660:five_prime_UTR 50.0%
CTTAATTCCCGACCGAACTC+CGG + chr7_1:68827803-68827822 None:intergenic 50.0%
TCTGGTCGGATCTTGCTTTG+TGG - chr7_1:68826538-68826557 Msa1033660:three_prime_UTR 50.0%
CTGGTCGGATCTTGCTTTGT+GGG - chr7_1:68826539-68826558 Msa1033660:three_prime_UTR 50.0%
GGATCTTGCTTTGTGGGATG+TGG - chr7_1:68826545-68826564 Msa1033660:three_prime_UTR 50.0%
TACTGTATGCCTGGCATGAC+AGG - chr7_1:68827433-68827452 Msa1033660:intron 50.0%
TTTGCAATCCGGAGTTCGGT+CGG - chr7_1:68827792-68827811 Msa1033660:five_prime_UTR 50.0%
CTTAATTCCCGACCGAACTC+CGG + chr7_1:68827803-68827822 None:intergenic 50.0%
TTGCAATCCGGAGTTCGGTC+GGG - chr7_1:68827793-68827812 Msa1033660:five_prime_UTR 55.0%
TTGCAATCCGGAGTTCGGTC+GGG - chr7_1:68827793-68827812 Msa1033660:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 68826392 68827981 68826392 ID=Msa1033660;Name=Msa1033660
chr7_1 mRNA 68826392 68827981 68826392 ID=Msa1033660-mRNA-1;Parent=Msa1033660;Name=Msa1033660-mRNA-1;_AED=0.05;_eAED=0.05;_QI=385|1|1|1|1|1|3|477|102
chr7_1 exon 68826392 68826970 68826392 ID=Msa1033660-mRNA-1:exon:16157;Parent=Msa1033660-mRNA-1
chr7_1 exon 68827114 68827217 68827114 ID=Msa1033660-mRNA-1:exon:16156;Parent=Msa1033660-mRNA-1
chr7_1 exon 68827494 68827981 68827494 ID=Msa1033660-mRNA-1:exon:16155;Parent=Msa1033660-mRNA-1
chr7_1 five_prime_UTR 68827597 68827981 68827597 ID=Msa1033660-mRNA-1:five_prime_utr;Parent=Msa1033660-mRNA-1
chr7_1 CDS 68827494 68827596 68827494 ID=Msa1033660-mRNA-1:cds;Parent=Msa1033660-mRNA-1
chr7_1 CDS 68827114 68827217 68827114 ID=Msa1033660-mRNA-1:cds;Parent=Msa1033660-mRNA-1
chr7_1 CDS 68826869 68826970 68826869 ID=Msa1033660-mRNA-1:cds;Parent=Msa1033660-mRNA-1
chr7_1 three_prime_UTR 68826392 68826868 68826392 ID=Msa1033660-mRNA-1:three_prime_utr;Parent=Msa1033660-mRNA-1
Gene Sequence

>Msa1033660

ATGGGAATGGCTGCAGAGTCACAGTTTCATGTTTTGGCTGTTGATGACAGCATCATAGATAGGAAGCTTATTGAGAGGCTTCTCAAAACATCTTCATATCAAGTTACTACAGTTGATTCTGGTAGCAAGGCTTTAGAGTTTTTGGGTTTGTGTGAGAATGATGAGACCAACCCAAATACACCATCTGTATTTCCTAACAATCATCAGGAAGTGGAGGTGAATCTTGTTATAACAGATTACTGTATGCCTGGCATGACAGGCTATGATTTGCTTAAGAAAATCAAGGTAAGCTTTGGTTTCCATTCCTGA

Protein sequence

>Msa1033660

MGMAAESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLCENDETNPNTPSVFPNNHQEVEVNLVITDYCMPGMTGYDLLKKIKVSFGFHS*