Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068280 | XP_003624235.1 | 94.048 | 336 | 17 | 3 | 1 | 334 | 1 | 335 | 0.0 | 599 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068280 | sp|Q9T072|BH025_ARATH | 39.013 | 223 | 115 | 6 | 118 | 326 | 109 | 324 | 3.15e-35 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068280 | G7KSG4 | 94.048 | 336 | 17 | 3 | 1 | 334 | 1 | 335 | 0.0 | 599 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1068280 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0751260 | Msa1068280 | 0.801431 | 9.033147e-49 | -8.615850e-47 |
| Msa0795070 | Msa1068280 | 0.822924 | 1.825412e-53 | -8.615850e-47 |
| Msa0146740 | Msa1068280 | 0.806617 | 7.541623e-50 | -8.615850e-47 |
| Msa0187030 | Msa1068280 | 0.826071 | 3.316813e-54 | -8.615850e-47 |
| Msa0402180 | Msa1068280 | 0.807766 | 4.305686e-50 | -8.615850e-47 |
| Msa1029420 | Msa1068280 | 0.983029 | 1.221626e-156 | -8.615850e-47 |
| Msa1033660 | Msa1068280 | 0.827169 | 1.815008e-54 | -8.615850e-47 |
| Msa1038080 | Msa1068280 | 0.808468 | 3.051488e-50 | -8.615850e-47 |
| Msa1068280 | Msa1108790 | 0.803088 | 4.118251e-49 | -8.615850e-47 |
| Msa1068280 | Msa1156420 | 0.946903 | 1.894458e-105 | -8.615850e-47 |
| Msa1068280 | Msa1365760 | 0.817912 | 2.578446e-52 | -8.615850e-47 |
| Msa0483800 | Msa1068280 | 0.826790 | 2.235439e-54 | -8.615850e-47 |
| Msa0579660 | Msa1068280 | 0.807160 | 5.787704e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068280 | MtrunA17_Chr7g0249811 | 94.048 | 336 | 17 | 3 | 1 | 334 | 1 | 335 | 0.0 | 599 |
| Msa1068280 | MtrunA17_Chr8g0336681 | 45.528 | 246 | 104 | 5 | 115 | 332 | 97 | 340 | 1.14e-56 | 187 |
| Msa1068280 | MtrunA17_Chr4g0002801 | 36.986 | 365 | 159 | 11 | 1 | 328 | 1 | 331 | 3.53e-52 | 175 |
| Msa1068280 | MtrunA17_Chr2g0333641 | 36.182 | 351 | 154 | 9 | 1 | 326 | 1 | 306 | 5.17e-52 | 174 |
| Msa1068280 | MtrunA17_Chr2g0333621 | 36.901 | 355 | 152 | 10 | 1 | 327 | 1 | 311 | 3.24e-51 | 172 |
| Msa1068280 | MtrunA17_Chr4g0002781 | 35.121 | 373 | 174 | 11 | 1 | 328 | 1 | 350 | 2.64e-49 | 168 |
| Msa1068280 | MtrunA17_Chr5g0400661 | 35.461 | 282 | 133 | 5 | 95 | 327 | 53 | 334 | 7.44e-43 | 150 |
| Msa1068280 | MtrunA17_Chr5g0400621 | 42.408 | 191 | 101 | 1 | 148 | 329 | 141 | 331 | 5.05e-41 | 146 |
| Msa1068280 | MtrunA17_Chr4g0054561 | 45.251 | 179 | 91 | 2 | 155 | 326 | 146 | 324 | 2.07e-40 | 144 |
| Msa1068280 | MtrunA17_Chr4g0049331 | 40.164 | 244 | 123 | 6 | 101 | 323 | 62 | 303 | 4.30e-40 | 143 |
| Msa1068280 | MtrunA17_Chr2g0333611 | 43.548 | 186 | 97 | 3 | 153 | 331 | 35 | 219 | 2.48e-39 | 138 |
| Msa1068280 | MtrunA17_Chr5g0400671 | 41.243 | 177 | 98 | 1 | 157 | 327 | 147 | 323 | 1.55e-38 | 139 |
| Msa1068280 | MtrunA17_Chr4g0054551 | 43.575 | 179 | 94 | 2 | 155 | 326 | 146 | 324 | 4.72e-38 | 138 |
| Msa1068280 | MtrunA17_Chr6g0468491 | 42.857 | 182 | 94 | 3 | 152 | 323 | 124 | 305 | 3.80e-37 | 135 |
| Msa1068280 | MtrunA17_Chr2g0307131 | 41.176 | 187 | 100 | 2 | 152 | 328 | 166 | 352 | 6.19e-37 | 135 |
| Msa1068280 | MtrunA17_Chr4g0054581 | 38.579 | 197 | 106 | 2 | 152 | 334 | 186 | 381 | 2.05e-36 | 135 |
| Msa1068280 | MtrunA17_Chr2g0307141 | 41.111 | 180 | 97 | 1 | 163 | 333 | 182 | 361 | 6.09e-36 | 133 |
| Msa1068280 | MtrunA17_Chr4g0033391 | 36.792 | 212 | 110 | 4 | 127 | 328 | 120 | 317 | 6.89e-35 | 129 |
| Msa1068280 | MtrunA17_Chr7g0225901 | 38.710 | 186 | 98 | 4 | 132 | 308 | 63 | 241 | 3.22e-34 | 126 |
| Msa1068280 | MtrunA17_Chr4g0033291 | 34.118 | 255 | 152 | 5 | 90 | 328 | 71 | 325 | 4.06e-34 | 127 |
| Msa1068280 | MtrunA17_Chr2g0280161 | 42.442 | 172 | 89 | 2 | 162 | 323 | 175 | 346 | 5.81e-33 | 125 |
| Msa1068280 | MtrunA17_Chr2g0333541 | 44.565 | 184 | 88 | 3 | 152 | 323 | 83 | 264 | 5.91e-33 | 123 |
| Msa1068280 | MtrunA17_Chr4g0033281 | 35.071 | 211 | 125 | 4 | 132 | 330 | 118 | 328 | 8.05e-31 | 119 |
| Msa1068280 | MtrunA17_Chr4g0054621 | 30.000 | 260 | 164 | 5 | 82 | 328 | 84 | 338 | 5.84e-30 | 117 |
| Msa1068280 | MtrunA17_Chr4g0054571 | 35.950 | 242 | 123 | 7 | 117 | 328 | 91 | 330 | 2.42e-29 | 115 |
| Msa1068280 | MtrunA17_Chr5g0400641 | 40.667 | 150 | 80 | 1 | 167 | 307 | 1 | 150 | 6.50e-29 | 109 |
| Msa1068280 | MtrunA17_Chr6g0468461 | 37.037 | 162 | 96 | 2 | 146 | 307 | 156 | 311 | 9.05e-26 | 105 |
| Msa1068280 | MtrunA17_Chr4g0002851 | 38.000 | 150 | 83 | 3 | 174 | 323 | 53 | 192 | 9.92e-23 | 94.0 |
| Msa1068280 | MtrunA17_Chr7g0233441 | 37.143 | 140 | 81 | 2 | 187 | 323 | 57 | 192 | 2.67e-22 | 92.8 |
| Msa1068280 | MtrunA17_Chr4g0002831 | 37.748 | 151 | 91 | 3 | 174 | 323 | 52 | 200 | 2.29e-20 | 87.8 |
| Msa1068280 | MtrunA17_Chr8g0336671 | 64.000 | 50 | 17 | 1 | 148 | 197 | 20 | 68 | 1.80e-13 | 65.1 |
| Msa1068280 | MtrunA17_Chr8g0346161 | 25.500 | 200 | 127 | 6 | 134 | 313 | 256 | 453 | 2.54e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068280 | AT4G37850.2 | 39.013 | 223 | 115 | 6 | 118 | 326 | 109 | 324 | 3.20e-36 | 133 |
| Msa1068280 | AT4G37850.1 | 39.013 | 223 | 115 | 6 | 118 | 326 | 109 | 324 | 3.20e-36 | 133 |
| Msa1068280 | AT2G22770.1 | 40.609 | 197 | 93 | 2 | 156 | 328 | 124 | 320 | 8.85e-36 | 132 |
| Msa1068280 | AT2G22750.2 | 38.636 | 264 | 117 | 7 | 73 | 322 | 65 | 297 | 1.35e-32 | 123 |
| Msa1068280 | AT2G22750.5 | 38.636 | 264 | 117 | 7 | 73 | 322 | 89 | 321 | 2.40e-32 | 123 |
| Msa1068280 | AT2G22750.3 | 38.636 | 264 | 117 | 7 | 73 | 322 | 93 | 325 | 2.59e-32 | 123 |
| Msa1068280 | AT2G22760.1 | 40.556 | 180 | 94 | 3 | 157 | 323 | 112 | 291 | 3.11e-32 | 122 |
| Msa1068280 | AT2G22750.1 | 39.015 | 264 | 115 | 8 | 73 | 322 | 65 | 296 | 8.61e-32 | 121 |
| Msa1068280 | AT2G22750.4 | 39.015 | 264 | 115 | 8 | 73 | 322 | 93 | 324 | 1.27e-31 | 121 |
| Msa1068280 | AT2G22760.2 | 38.650 | 163 | 88 | 2 | 157 | 307 | 112 | 274 | 6.53e-27 | 107 |
| Msa1068280 | AT4G09820.1 | 31.452 | 124 | 74 | 2 | 165 | 288 | 364 | 476 | 2.23e-14 | 74.3 |
| Msa1068280 | AT5G57150.1 | 28.485 | 165 | 99 | 5 | 165 | 311 | 55 | 218 | 2.22e-12 | 66.6 |
| Msa1068280 | AT5G57150.5 | 28.758 | 153 | 91 | 4 | 165 | 299 | 55 | 207 | 2.57e-12 | 65.9 |
| Msa1068280 | AT5G57150.2 | 28.758 | 153 | 91 | 4 | 165 | 299 | 56 | 208 | 2.74e-12 | 65.9 |
| Msa1068280 | AT5G57150.3 | 28.758 | 153 | 91 | 4 | 165 | 299 | 56 | 208 | 2.92e-12 | 65.9 |
| Msa1068280 | AT5G46760.1 | 22.881 | 236 | 154 | 4 | 75 | 291 | 329 | 555 | 8.37e-12 | 66.6 |
| Msa1068280 | AT5G57150.4 | 27.215 | 158 | 87 | 4 | 165 | 299 | 56 | 208 | 1.21e-11 | 64.7 |
| Msa1068280 | AT4G29930.2 | 25.490 | 153 | 112 | 2 | 165 | 316 | 55 | 206 | 2.97e-11 | 62.8 |
Find 78 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATATTGTTGGTAAGAATT+TGG | 0.188088 | 7_2:+63266700 | Msa1068280:three_prime_UTR |
| GGAGAATTTGATTTCTTATA+TGG | 0.194480 | 7_2:+63263843 | Msa1068280:CDS |
| CCCAATTGTAATTATAATAA+TGG | 0.245776 | 7_2:+63266513 | Msa1068280:three_prime_UTR |
| CAGGGCCGTTCCTGCGAATA+TGG | 0.256571 | 7_2:+63266807 | Msa1068280:three_prime_UTR |
| GCCACATACCTTCTATCTTT+TGG | 0.267929 | 7_2:+63264277 | Msa1068280:CDS |
| CTCCAACTCAATCAAGTCTT+TGG | 0.295695 | 7_2:+63264231 | Msa1068280:CDS |
| TCAAAAGCGCATTAAAGAAT+TGG | 0.305540 | 7_2:+63265299 | Msa1068280:CDS |
| TATTCAAAAGGGTCACTTTA+GGG | 0.305647 | 7_2:+63263786 | Msa1068280:five_prime_UTR |
| ATATTCAAAAGGGTCACTTT+AGG | 0.307799 | 7_2:+63263785 | Msa1068280:five_prime_UTR |
| TCCATTATTATAATTACAAT+TGG | 0.314162 | 7_2:-63266514 | None:intergenic |
| GATTTCCACTTGAATATTGC+TGG | 0.322703 | 7_2:-63265351 | None:intergenic |
| CATGATACCTGGCTTGAAAA+AGG | 0.331924 | 7_2:+63264483 | Msa1068280:CDS |
| GAAGAGGGTTCACATGATTC+TGG | 0.333045 | 7_2:-63264049 | None:intergenic |
| CCATTTCTACTTTCTTTGAT+TGG | 0.338899 | 7_2:+63266556 | Msa1068280:three_prime_UTR |
| CCATTATTATAATTACAATT+GGG | 0.354808 | 7_2:-63266513 | None:intergenic |
| CTGCTAGTGCATCAAAATAA+AGG | 0.360206 | 7_2:+63266485 | Msa1068280:three_prime_UTR |
| GAGTATATTCAAATCGCATC+TGG | 0.373851 | 7_2:+63266738 | Msa1068280:three_prime_UTR |
| GACAGTACAAGATCACTTAA+TGG | 0.377290 | 7_2:+63264408 | Msa1068280:CDS |
| TTCAAGATATGTAATATTGT+TGG | 0.379530 | 7_2:+63266689 | Msa1068280:three_prime_UTR |
| TGTGACATTGGTTCAATGAT+TGG | 0.382838 | 7_2:-63264316 | None:intergenic |
| AGTTGTTGTACTATTGCCTT+GGG | 0.387217 | 7_2:-63264092 | None:intergenic |
| CACATGATTCTGGTTCTTCA+AGG | 0.387684 | 7_2:-63264039 | None:intergenic |
| CCAATCAAAGAAAGTAGAAA+TGG | 0.413718 | 7_2:-63266556 | None:intergenic |
| AAATCTGAGAAAATATCTAT+TGG | 0.423346 | 7_2:+63266436 | Msa1068280:CDS |
| TGTAATCAACATTTGTGCTC+AGG | 0.432810 | 7_2:+63265569 | Msa1068280:CDS |
| TAGTTGTTGTACTATTGCCT+TGG | 0.441021 | 7_2:-63264093 | None:intergenic |
| CTATACCAGTCATATTCAAA+AGG | 0.442542 | 7_2:+63263774 | Msa1068280:five_prime_UTR |
| TTGAGTTACCAAAAGATAGA+AGG | 0.445013 | 7_2:-63264285 | None:intergenic |
| ATAATGGAATGAGGATGTAT+TGG | 0.445940 | 7_2:+63266529 | Msa1068280:three_prime_UTR |
| AAGCAACAAAGAAGGTTAGA+AGG | 0.446951 | 7_2:+63264377 | Msa1068280:CDS |
| TGGCTGAGAGGAAGAGGAGA+AGG | 0.451096 | 7_2:+63264428 | Msa1068280:CDS |
| GCACTTTCAGCCATGATACC+TGG | 0.455730 | 7_2:+63264472 | Msa1068280:CDS |
| TTCCAAAGACTTGATTGAGT+TGG | 0.458779 | 7_2:-63264233 | None:intergenic |
| CTCTCTTCAATTTGCAACAA+TGG | 0.461302 | 7_2:+63263810 | Msa1068280:exon |
| AAAGGACAAAATACTATTTG+TGG | 0.476362 | 7_2:-63264146 | None:intergenic |
| TGCAACAATGGAGGATTCAC+TGG | 0.488783 | 7_2:+63263822 | Msa1068280:exon |
| AAGGACAAAATACTATTTGT+GGG | 0.492056 | 7_2:-63264145 | None:intergenic |
| ATGACTGGTATAGAGTTGTT+AGG | 0.492555 | 7_2:-63263764 | None:intergenic |
| GGCTGAGAGGAAGAGGAGAA+GGG | 0.495214 | 7_2:+63264429 | Msa1068280:CDS |
| TGAAGCTAGAGTCAAAGAAA+AGG | 0.495694 | 7_2:+63265422 | Msa1068280:CDS |
| ACTTAATGGCTGAGAGGAAG+AGG | 0.503095 | 7_2:+63264422 | Msa1068280:CDS |
| ACAACATGGTTATTAATCAC+AGG | 0.508793 | 7_2:+63266788 | Msa1068280:three_prime_UTR |
| ACAACTATAATAAATGTTGA+AGG | 0.516555 | 7_2:+63264109 | Msa1068280:CDS |
| TCTGAGAAAATATCTATTGG+AGG | 0.519320 | 7_2:+63266439 | Msa1068280:CDS |
| CTTTGTTCCAATAAAACCCA+AGG | 0.520956 | 7_2:+63264076 | Msa1068280:CDS |
| CATTATTATAATTACAATTG+GGG | 0.527627 | 7_2:-63266512 | None:intergenic |
| AATCTCAAGCAGTGATTCTG+AGG | 0.530393 | 7_2:-63265400 | None:intergenic |
| AATTCATTGTGAGAAGCAAA+AGG | 0.532564 | 7_2:+63265458 | Msa1068280:CDS |
| AAAGATAGAAGGTATGTGGC+TGG | 0.543699 | 7_2:-63264274 | None:intergenic |
| ATTGGAACAAAGATAAGAAG+AGG | 0.546112 | 7_2:-63264065 | None:intergenic |
| AGTGAAGGAAGCAACAAAGA+AGG | 0.546734 | 7_2:+63264369 | Msa1068280:CDS |
| TATACCAGTCATATTCAAAA+GGG | 0.555111 | 7_2:+63263775 | Msa1068280:five_prime_UTR |
| AACCGAGCCTCCATATTCGC+AGG | 0.555589 | 7_2:-63266817 | None:intergenic |
| TTCCTGCGAATATGGAGGCT+CGG | 0.557828 | 7_2:+63266815 | Msa1068280:three_prime_UTR |
| TGAAGAAGACAGCATGGCCA+TGG | 0.560524 | 7_2:+63266400 | Msa1068280:CDS |
| GACAGATGAAGCAAGAGTGA+AGG | 0.560915 | 7_2:+63264354 | Msa1068280:CDS |
| AGCCTCCATATTCGCAGGAA+CGG | 0.565306 | 7_2:-63266812 | None:intergenic |
| TGTCACATAAAACTAAAAGA+AGG | 0.567489 | 7_2:+63264332 | Msa1068280:CDS |
| AGTAGTAGCATGTTACCATT+CGG | 0.568567 | 7_2:+63265534 | Msa1068280:CDS |
| ATTCAAAAGGGTCACTTTAG+GGG | 0.568631 | 7_2:+63263787 | Msa1068280:five_prime_UTR |
| ACCAAAAGATAGAAGGTATG+TGG | 0.570819 | 7_2:-63264278 | None:intergenic |
| TTGCTCATCAAATGTGGTGG+TGG | 0.571745 | 7_2:-63263996 | None:intergenic |
| AATTTGGCTTTGTAAACGCA+TGG | 0.572879 | 7_2:+63266716 | Msa1068280:three_prime_UTR |
| GTAATTATAATAATGGAATG+AGG | 0.575299 | 7_2:+63266520 | Msa1068280:three_prime_UTR |
| CAAATCCAGCAATATTCAAG+TGG | 0.578490 | 7_2:+63265346 | Msa1068280:CDS |
| AAATAAACTTGTCTCATCAA+AGG | 0.579876 | 7_2:-63264164 | None:intergenic |
| TCTTCAATTTGCAACAATGG+AGG | 0.581385 | 7_2:+63263813 | Msa1068280:exon |
| AGTATATTCAAATCGCATCT+GGG | 0.598233 | 7_2:+63266739 | Msa1068280:three_prime_UTR |
| TTGGAACAAAGATAAGAAGA+GGG | 0.598491 | 7_2:-63264064 | None:intergenic |
| CATGGCCATGGATGACCTTG+TGG | 0.614537 | 7_2:+63266412 | Msa1068280:CDS |
| CTCTTGCTCATCAAATGTGG+TGG | 0.624271 | 7_2:-63263999 | None:intergenic |
| CAACATGGTTATTAATCACA+GGG | 0.626451 | 7_2:+63266789 | Msa1068280:three_prime_UTR |
| AAACTCTTGCTCATCAAATG+TGG | 0.646764 | 7_2:-63264002 | None:intergenic |
| GATGGATGAAGAAGACAGCA+TGG | 0.648869 | 7_2:+63266394 | Msa1068280:intron |
| GGCCGTTCCTGCGAATATGG+AGG | 0.653168 | 7_2:+63266810 | Msa1068280:three_prime_UTR |
| ACAAGAATAGAAGCACCGAA+TGG | 0.665943 | 7_2:-63265549 | None:intergenic |
| AAGATCACTTAATGGCTGAG+AGG | 0.675984 | 7_2:+63264416 | Msa1068280:CDS |
| TGACTATTAACAAAACAACA+TGG | 0.718867 | 7_2:+63266774 | Msa1068280:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATATTTAAAAAAATT+AGG | + | chr7_2:63264651-63264670 | Msa1068280:intron | 0.0% |
| !!! | TTATATCATTATTTGTTAAT+TGG | + | chr7_2:63263909-63263928 | Msa1068280:intron | 10.0% |
| !!! | AAGAAAAAAAAGTTTTATAA+TGG | - | chr7_2:63265621-63265640 | None:intergenic | 10.0% |
| !!! | TAATTAATTATTTTATGCAA+GGG | - | chr7_2:63265717-63265736 | None:intergenic | 10.0% |
| !!! | ATAATTAATTATTTTATGCA+AGG | - | chr7_2:63265718-63265737 | None:intergenic | 10.0% |
| !!! | TAAATATACTTTTTTAAAAG+TGG | - | chr7_2:63266227-63266246 | None:intergenic | 10.0% |
| !!! | TTTTTTTTATCTTTGATCAT+AGG | + | chr7_2:63263943-63263962 | Msa1068280:intron | 15.0% |
| !! | TATATAAATTTGTACGATAA+TGG | - | chr7_2:63264593-63264612 | None:intergenic | 15.0% |
| !!! | ATGATATCTTGATTTTTTTA+GGG | - | chr7_2:63264930-63264949 | None:intergenic | 15.0% |
| !!! | TATGATATCTTGATTTTTTT+AGG | - | chr7_2:63264931-63264950 | None:intergenic | 15.0% |
| !! | TTCGTATAATTGAATATTAA+AGG | + | chr7_2:63265179-63265198 | Msa1068280:intron | 15.0% |
| !! | GAAATGATTAATATCTTATT+GGG | - | chr7_2:63265790-63265809 | None:intergenic | 15.0% |
| !! | TGAAATGATTAATATCTTAT+TGG | - | chr7_2:63265791-63265810 | None:intergenic | 15.0% |
| !!! | TTGAAAGTATTTTTCATTTT+GGG | - | chr7_2:63265888-63265907 | None:intergenic | 15.0% |
| !!! | ATTGAAAGTATTTTTCATTT+TGG | - | chr7_2:63265889-63265908 | None:intergenic | 15.0% |
| !!! | ATAAATCAATCATTTTAGAA+TGG | + | chr7_2:63266094-63266113 | Msa1068280:intron | 15.0% |
| !!! | TTTTAACAAATCTTTGTTAT+TGG | + | chr7_2:63266200-63266219 | Msa1068280:intron | 15.0% |
| !! | AAAAAAATCAAAAAGAGTAA+AGG | + | chr7_2:63266287-63266306 | Msa1068280:intron | 15.0% |
| !! | CATTATTATAATTACAATTG+GGG | - | chr7_2:63266515-63266534 | None:intergenic | 15.0% |
| !! | CCATTATTATAATTACAATT+GGG | - | chr7_2:63266516-63266535 | None:intergenic | 15.0% |
| !! | TCCATTATTATAATTACAAT+TGG | - | chr7_2:63266517-63266536 | None:intergenic | 15.0% |
| !! | ACAACTATAATAAATGTTGA+AGG | + | chr7_2:63264109-63264128 | Msa1068280:CDS | 20.0% |
| !!! | AAATTATTTTGAGCTTAAAC+TGG | + | chr7_2:63264850-63264869 | Msa1068280:intron | 20.0% |
| !!! | AATTATTTTGAGCTTAAACT+GGG | + | chr7_2:63264851-63264870 | Msa1068280:intron | 20.0% |
| !! | GTTTAATGCTGTATTATTAT+CGG | + | chr7_2:63265101-63265120 | Msa1068280:intron | 20.0% |
| !! | ATTACAATATAAAGTCAGAT+GGG | - | chr7_2:63265212-63265231 | None:intergenic | 20.0% |
| !! | AATTACAATATAAAGTCAGA+TGG | - | chr7_2:63265213-63265232 | None:intergenic | 20.0% |
| !! | ATTTCTCTAATTACTATAGA+TGG | + | chr7_2:63265230-63265249 | Msa1068280:intron | 20.0% |
| !!! | ACTTTTTAAGATGAATAAGT+AGG | + | chr7_2:63265669-63265688 | Msa1068280:intron | 20.0% |
| !!! | CTTTTTAAGATGAATAAGTA+GGG | + | chr7_2:63265670-63265689 | Msa1068280:intron | 20.0% |
| !! | ATTAATATCTTATTGGGTTA+AGG | - | chr7_2:63265784-63265803 | None:intergenic | 20.0% |
| !!! | ACATTTTTATTTGTGTGAAA+TGG | + | chr7_2:63266067-63266086 | Msa1068280:intron | 20.0% |
| !! | AAATCTGAGAAAATATCTAT+TGG | + | chr7_2:63266436-63266455 | Msa1068280:CDS | 20.0% |
| !! | CCCAATTGTAATTATAATAA+TGG | + | chr7_2:63266513-63266532 | Msa1068280:three_prime_UTR | 20.0% |
| !!! | GTAATTATAATAATGGAATG+AGG | + | chr7_2:63266520-63266539 | Msa1068280:three_prime_UTR | 20.0% |
| !! | TTCAAGATATGTAATATTGT+TGG | + | chr7_2:63266689-63266708 | Msa1068280:three_prime_UTR | 20.0% |
| !!! | TAATATTGTTGGTAAGAATT+TGG | + | chr7_2:63266700-63266719 | Msa1068280:three_prime_UTR | 20.0% |
| ! | TATACCAGTCATATTCAAAA+GGG | + | chr7_2:63263775-63263794 | Msa1068280:five_prime_UTR | 25.0% |
| !! | GGAGAATTTGATTTCTTATA+TGG | + | chr7_2:63263843-63263862 | Msa1068280:CDS | 25.0% |
| ! | AATCATGTATGTATGTAGTA+TGG | - | chr7_2:63263880-63263899 | None:intergenic | 25.0% |
| ! | TTATCTTTGATCATAGGAAA+TGG | + | chr7_2:63263949-63263968 | Msa1068280:intron | 25.0% |
| ! | AAGGACAAAATACTATTTGT+GGG | - | chr7_2:63264148-63264167 | None:intergenic | 25.0% |
| ! | AAAGGACAAAATACTATTTG+TGG | - | chr7_2:63264149-63264168 | None:intergenic | 25.0% |
| ! | AAATAAACTTGTCTCATCAA+AGG | - | chr7_2:63264167-63264186 | None:intergenic | 25.0% |
| !!! | CTTTTAGTTTTATGTGACAT+TGG | - | chr7_2:63264331-63264350 | None:intergenic | 25.0% |
| ! | TGTCACATAAAACTAAAAGA+AGG | + | chr7_2:63264332-63264351 | Msa1068280:CDS | 25.0% |
| !!! | ATTATTTTGAGCTTAAACTG+GGG | + | chr7_2:63264852-63264871 | Msa1068280:intron | 25.0% |
| !! | TAAAAGTCAATGAAAAGCAT+AGG | - | chr7_2:63265049-63265068 | None:intergenic | 25.0% |
| !!! | GACAACTTTTTTCTTCAAAT+AGG | - | chr7_2:63265866-63265885 | None:intergenic | 25.0% |
| !!! | AATCAATCATTTTAGAATGG+AGG | + | chr7_2:63266097-63266116 | Msa1068280:intron | 25.0% |
| !!! | ATCAATCATTTTAGAATGGA+GGG | + | chr7_2:63266098-63266117 | Msa1068280:intron | 25.0% |
| ! | TATATTGATAAACCTCATTG+TGG | + | chr7_2:63266126-63266145 | Msa1068280:intron | 25.0% |
| !! | AACATTTACATAACCCATTT+TGG | - | chr7_2:63266167-63266186 | None:intergenic | 25.0% |
| !!! | AAAATGGGTTATGTAAATGT+TGG | + | chr7_2:63266166-63266185 | Msa1068280:intron | 25.0% |
| !! | TGATCTCTAATTTGTAATGT+TGG | + | chr7_2:63266333-63266352 | Msa1068280:intron | 25.0% |
| !! | GATCTCTAATTTGTAATGTT+GGG | + | chr7_2:63266334-63266353 | Msa1068280:intron | 25.0% |
| ! | TTTGTCACATTGAAGAAAAA+AGG | + | chr7_2:63266591-63266610 | Msa1068280:three_prime_UTR | 25.0% |
| ! | TGACTATTAACAAAACAACA+TGG | + | chr7_2:63266774-63266793 | Msa1068280:three_prime_UTR | 25.0% |
| CTATACCAGTCATATTCAAA+AGG | + | chr7_2:63263774-63263793 | Msa1068280:five_prime_UTR | 30.0% | |
| ! | ATATTCAAAAGGGTCACTTT+AGG | + | chr7_2:63263785-63263804 | Msa1068280:five_prime_UTR | 30.0% |
| ! | TATTCAAAAGGGTCACTTTA+GGG | + | chr7_2:63263786-63263805 | Msa1068280:five_prime_UTR | 30.0% |
| TTGGAACAAAGATAAGAAGA+GGG | - | chr7_2:63264067-63264086 | None:intergenic | 30.0% | |
| ATTGGAACAAAGATAAGAAG+AGG | - | chr7_2:63264068-63264087 | None:intergenic | 30.0% | |
| !!! | GATGAGACAAGTTTATTTTG+TGG | + | chr7_2:63264169-63264188 | Msa1068280:CDS | 30.0% |
| TTGAGTTACCAAAAGATAGA+AGG | - | chr7_2:63264288-63264307 | None:intergenic | 30.0% | |
| ! | AAGCCAAAACAGCTTTTATA+TGG | + | chr7_2:63264754-63264773 | Msa1068280:intron | 30.0% |
| ! | CATCCATATAAAAGCTGTTT+TGG | - | chr7_2:63264760-63264779 | None:intergenic | 30.0% |
| ! | CAATGAAAAGCATAGGTATT+AGG | - | chr7_2:63265042-63265061 | None:intergenic | 30.0% |
| ! | TCAAAAGCGCATTAAAGAAT+TGG | + | chr7_2:63265299-63265318 | Msa1068280:CDS | 30.0% |
| AATTCATTGTGAGAAGCAAA+AGG | + | chr7_2:63265458-63265477 | Msa1068280:CDS | 30.0% | |
| ! | ATTTTCTCAGATTTTCCACA+AGG | - | chr7_2:63266430-63266449 | None:intergenic | 30.0% |
| TCTGAGAAAATATCTATTGG+AGG | + | chr7_2:63266439-63266458 | Msa1068280:CDS | 30.0% | |
| !!! | TTTATTTTGATGCACTAGCA+GGG | - | chr7_2:63266486-63266505 | None:intergenic | 30.0% |
| ! | ATAATGGAATGAGGATGTAT+TGG | + | chr7_2:63266529-63266548 | Msa1068280:three_prime_UTR | 30.0% |
| CCAATCAAAGAAAGTAGAAA+TGG | - | chr7_2:63266559-63266578 | None:intergenic | 30.0% | |
| CCATTTCTACTTTCTTTGAT+TGG | + | chr7_2:63266556-63266575 | Msa1068280:three_prime_UTR | 30.0% | |
| AGTATATTCAAATCGCATCT+GGG | + | chr7_2:63266739-63266758 | Msa1068280:three_prime_UTR | 30.0% | |
| ACAACATGGTTATTAATCAC+AGG | + | chr7_2:63266788-63266807 | Msa1068280:three_prime_UTR | 30.0% | |
| CAACATGGTTATTAATCACA+GGG | + | chr7_2:63266789-63266808 | Msa1068280:three_prime_UTR | 30.0% | |
| ATGACTGGTATAGAGTTGTT+AGG | - | chr7_2:63263767-63263786 | None:intergenic | 35.0% | |
| ! | ATTCAAAAGGGTCACTTTAG+GGG | + | chr7_2:63263787-63263806 | Msa1068280:five_prime_UTR | 35.0% |
| CTCTCTTCAATTTGCAACAA+TGG | + | chr7_2:63263810-63263829 | Msa1068280:exon | 35.0% | |
| TCTTCAATTTGCAACAATGG+AGG | + | chr7_2:63263813-63263832 | Msa1068280:exon | 35.0% | |
| AAACTCTTGCTCATCAAATG+TGG | - | chr7_2:63264005-63264024 | None:intergenic | 35.0% | |
| CTTTGTTCCAATAAAACCCA+AGG | + | chr7_2:63264076-63264095 | Msa1068280:CDS | 35.0% | |
| !! | ACTATTGCCTTGGGTTTTAT+TGG | - | chr7_2:63264086-63264105 | None:intergenic | 35.0% |
| AGTTGTTGTACTATTGCCTT+GGG | - | chr7_2:63264095-63264114 | None:intergenic | 35.0% | |
| TAGTTGTTGTACTATTGCCT+TGG | - | chr7_2:63264096-63264115 | None:intergenic | 35.0% | |
| !! | AGTTGGAGCTATTACTTTTG+TGG | - | chr7_2:63264219-63264238 | None:intergenic | 35.0% |
| TTCCAAAGACTTGATTGAGT+TGG | - | chr7_2:63264236-63264255 | None:intergenic | 35.0% | |
| ! | ACCAAAAGATAGAAGGTATG+TGG | - | chr7_2:63264281-63264300 | None:intergenic | 35.0% |
| !! | TGTGACATTGGTTCAATGAT+TGG | - | chr7_2:63264319-63264338 | None:intergenic | 35.0% |
| AAGCAACAAAGAAGGTTAGA+AGG | + | chr7_2:63264377-63264396 | Msa1068280:CDS | 35.0% | |
| GACAGTACAAGATCACTTAA+TGG | + | chr7_2:63264408-63264427 | Msa1068280:CDS | 35.0% | |
| !!! | AAACTAACCTTTTTCAAGCC+AGG | - | chr7_2:63264493-63264512 | None:intergenic | 35.0% |
| ACAACATGTTTGTGTAAGAC+AGG | - | chr7_2:63265147-63265166 | None:intergenic | 35.0% | |
| CAAATCCAGCAATATTCAAG+TGG | + | chr7_2:63265346-63265365 | Msa1068280:CDS | 35.0% | |
| GATTTCCACTTGAATATTGC+TGG | - | chr7_2:63265354-63265373 | None:intergenic | 35.0% | |
| TGAAGCTAGAGTCAAAGAAA+AGG | + | chr7_2:63265422-63265441 | Msa1068280:CDS | 35.0% | |
| AGTAGTAGCATGTTACCATT+CGG | + | chr7_2:63265534-63265553 | Msa1068280:CDS | 35.0% | |
| TGTAATCAACATTTGTGCTC+AGG | + | chr7_2:63265569-63265588 | Msa1068280:CDS | 35.0% | |
| ! | ATGAATAAGTAGGGTGTCTA+GGG | + | chr7_2:63265679-63265698 | Msa1068280:intron | 35.0% |
| !! | ATTATTTTATGCAAGGGTCG+AGG | - | chr7_2:63265711-63265730 | None:intergenic | 35.0% |
| ! | TGAGCATTACTAAGTTGACA+GGG | - | chr7_2:63265741-63265760 | None:intergenic | 35.0% |
| TGTCAACTTAGTAATGCTCA+CGG | + | chr7_2:63265741-63265760 | Msa1068280:intron | 35.0% | |
| ATAGGTCAATCATTGTGAGA+AGG | - | chr7_2:63265848-63265867 | None:intergenic | 35.0% | |
| TGCTTATGTTCACACCAAAA+TGG | + | chr7_2:63266150-63266169 | Msa1068280:intron | 35.0% | |
| GCTTATGTTCACACCAAAAT+GGG | + | chr7_2:63266151-63266170 | Msa1068280:intron | 35.0% | |
| !!! | CTTTATTTTGATGCACTAGC+AGG | - | chr7_2:63266487-63266506 | None:intergenic | 35.0% |
| CTGCTAGTGCATCAAAATAA+AGG | + | chr7_2:63266485-63266504 | Msa1068280:three_prime_UTR | 35.0% | |
| !! | AATTTGGCTTTGTAAACGCA+TGG | + | chr7_2:63266716-63266735 | Msa1068280:three_prime_UTR | 35.0% |
| GAGTATATTCAAATCGCATC+TGG | + | chr7_2:63266738-63266757 | Msa1068280:three_prime_UTR | 35.0% | |
| ! | GTGACCCTTTTGAATATGAC+TGG | - | chr7_2:63263782-63263801 | None:intergenic | 40.0% |
| !! | CACATGATTCTGGTTCTTCA+AGG | - | chr7_2:63264042-63264061 | None:intergenic | 40.0% |
| CTCCAACTCAATCAAGTCTT+TGG | + | chr7_2:63264231-63264250 | Msa1068280:CDS | 40.0% | |
| ! | AAAGATAGAAGGTATGTGGC+TGG | - | chr7_2:63264277-63264296 | None:intergenic | 40.0% |
| ! | GCCACATACCTTCTATCTTT+TGG | + | chr7_2:63264277-63264296 | Msa1068280:CDS | 40.0% |
| AGTGAAGGAAGCAACAAAGA+AGG | + | chr7_2:63264369-63264388 | Msa1068280:CDS | 40.0% | |
| AAGATCACTTAATGGCTGAG+AGG | + | chr7_2:63264416-63264435 | Msa1068280:CDS | 40.0% | |
| !!! | CTTTTTCAAGCCAGGTATCA+TGG | - | chr7_2:63264485-63264504 | None:intergenic | 40.0% |
| ! | CATGATACCTGGCTTGAAAA+AGG | + | chr7_2:63264483-63264502 | Msa1068280:CDS | 40.0% |
| AATCTCAAGCAGTGATTCTG+AGG | - | chr7_2:63265403-63265422 | None:intergenic | 40.0% | |
| !! | ACAAGAATAGAAGCACCGAA+TGG | - | chr7_2:63265552-63265571 | None:intergenic | 40.0% |
| ! | GATGAATAAGTAGGGTGTCT+AGG | + | chr7_2:63265678-63265697 | Msa1068280:intron | 40.0% |
| ! | GTGAGCATTACTAAGTTGAC+AGG | - | chr7_2:63265742-63265761 | None:intergenic | 40.0% |
| GTCAACTTAGTAATGCTCAC+GGG | + | chr7_2:63265742-63265761 | Msa1068280:intron | 40.0% | |
| TCAACTTAGTAATGCTCACG+GGG | + | chr7_2:63265743-63265762 | Msa1068280:intron | 40.0% | |
| GTCAATCATTGTGAGAAGGA+TGG | - | chr7_2:63265844-63265863 | None:intergenic | 40.0% | |
| GAACATAAGCATCCACAATG+AGG | - | chr7_2:63266141-63266160 | None:intergenic | 40.0% | |
| ! | TGCTAAAGCTTTGATGCAGA+TGG | + | chr7_2:63266376-63266395 | Msa1068280:intron | 40.0% |
| ! | ATTTTCCACAAGGTCATCCA+TGG | - | chr7_2:63266420-63266439 | None:intergenic | 40.0% |
| TGCAACAATGGAGGATTCAC+TGG | + | chr7_2:63263822-63263841 | Msa1068280:exon | 45.0% | |
| TTGCTCATCAAATGTGGTGG+TGG | - | chr7_2:63263999-63264018 | None:intergenic | 45.0% | |
| CTCTTGCTCATCAAATGTGG+TGG | - | chr7_2:63264002-63264021 | None:intergenic | 45.0% | |
| GAAGAGGGTTCACATGATTC+TGG | - | chr7_2:63264052-63264071 | None:intergenic | 45.0% | |
| GACAGATGAAGCAAGAGTGA+AGG | + | chr7_2:63264354-63264373 | Msa1068280:CDS | 45.0% | |
| ACTTAATGGCTGAGAGGAAG+AGG | + | chr7_2:63264422-63264441 | Msa1068280:CDS | 45.0% | |
| GATGGATGAAGAAGACAGCA+TGG | + | chr7_2:63266394-63266413 | Msa1068280:intron | 45.0% | |
| GCACTTTCAGCCATGATACC+TGG | + | chr7_2:63264472-63264491 | Msa1068280:CDS | 50.0% | |
| TGAAGAAGACAGCATGGCCA+TGG | + | chr7_2:63266400-63266419 | Msa1068280:CDS | 50.0% | |
| AGCCTCCATATTCGCAGGAA+CGG | - | chr7_2:63266815-63266834 | None:intergenic | 50.0% | |
| TTCCTGCGAATATGGAGGCT+CGG | + | chr7_2:63266815-63266834 | Msa1068280:three_prime_UTR | 50.0% | |
| TGGCTGAGAGGAAGAGGAGA+AGG | + | chr7_2:63264428-63264447 | Msa1068280:CDS | 55.0% | |
| GGCTGAGAGGAAGAGGAGAA+GGG | + | chr7_2:63264429-63264448 | Msa1068280:CDS | 55.0% | |
| CATGGCCATGGATGACCTTG+TGG | + | chr7_2:63266412-63266431 | Msa1068280:CDS | 55.0% | |
| AACCGAGCCTCCATATTCGC+AGG | - | chr7_2:63266820-63266839 | None:intergenic | 55.0% | |
| CAGGGCCGTTCCTGCGAATA+TGG | + | chr7_2:63266807-63266826 | Msa1068280:three_prime_UTR | 60.0% | |
| GGCCGTTCCTGCGAATATGG+AGG | + | chr7_2:63266810-63266829 | Msa1068280:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 63263764 | 63266855 | 63263764 | ID=Msa1068280;Name=Msa1068280 |
| chr7_2 | mRNA | 63263764 | 63266855 | 63263764 | ID=Msa1068280-mRNA-1;Parent=Msa1068280;Name=Msa1068280-mRNA-1;_AED=0.00;_eAED=0.00;_QI=65|1|1|1|1|1|4|374|334 |
| chr7_2 | exon | 63263764 | 63263864 | 63263764 | ID=Msa1068280-mRNA-1:exon:13004;Parent=Msa1068280-mRNA-1 |
| chr7_2 | exon | 63263965 | 63264504 | 63263965 | ID=Msa1068280-mRNA-1:exon:13005;Parent=Msa1068280-mRNA-1 |
| chr7_2 | exon | 63265249 | 63265590 | 63265249 | ID=Msa1068280-mRNA-1:exon:13006;Parent=Msa1068280-mRNA-1 |
| chr7_2 | exon | 63266395 | 63266855 | 63266395 | ID=Msa1068280-mRNA-1:exon:13007;Parent=Msa1068280-mRNA-1 |
| chr7_2 | five_prime_UTR | 63263764 | 63263828 | 63263764 | ID=Msa1068280-mRNA-1:five_prime_utr;Parent=Msa1068280-mRNA-1 |
| chr7_2 | CDS | 63263829 | 63263864 | 63263829 | ID=Msa1068280-mRNA-1:cds;Parent=Msa1068280-mRNA-1 |
| chr7_2 | CDS | 63263965 | 63264504 | 63263965 | ID=Msa1068280-mRNA-1:cds;Parent=Msa1068280-mRNA-1 |
| chr7_2 | CDS | 63265249 | 63265590 | 63265249 | ID=Msa1068280-mRNA-1:cds;Parent=Msa1068280-mRNA-1 |
| chr7_2 | CDS | 63266395 | 63266481 | 63266395 | ID=Msa1068280-mRNA-1:cds;Parent=Msa1068280-mRNA-1 |
| chr7_2 | three_prime_UTR | 63266482 | 63266855 | 63266482 | ID=Msa1068280-mRNA-1:three_prime_utr;Parent=Msa1068280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
